Query 029123
Match_columns 198
No_of_seqs 177 out of 1450
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 1.6E-50 3.4E-55 329.1 22.8 191 2-197 1-191 (224)
2 PF12481 DUF3700: Aluminium in 100.0 3E-50 6.5E-55 322.5 19.2 194 2-197 1-195 (228)
3 PLN02549 asparagine synthase ( 100.0 2.4E-38 5.3E-43 290.7 18.9 159 30-197 20-182 (578)
4 PRK09431 asnB asparagine synth 100.0 3.1E-38 6.7E-43 289.2 18.7 160 29-197 19-183 (554)
5 PTZ00077 asparagine synthetase 100.0 7.6E-38 1.7E-42 288.0 19.5 162 30-198 20-191 (586)
6 COG0367 AsnB Asparagine syntha 100.0 1.5E-36 3.3E-41 277.3 15.4 161 28-198 17-188 (542)
7 cd00712 AsnB Glutamine amidotr 100.0 1.3E-35 2.8E-40 243.4 19.3 162 28-198 16-209 (220)
8 TIGR01536 asn_synth_AEB aspara 100.0 2.2E-35 4.7E-40 266.0 18.6 161 30-198 17-210 (467)
9 TIGR03104 trio_amidotrans aspa 100.0 7.2E-35 1.6E-39 269.1 17.3 160 29-197 18-211 (589)
10 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 2.7E-34 5.9E-39 229.5 13.7 155 29-195 19-181 (181)
11 TIGR03108 eps_aminotran_1 exos 100.0 1E-33 2.2E-38 263.3 17.4 161 29-197 19-211 (628)
12 PRK08525 amidophosphoribosyltr 100.0 3.2E-33 7E-38 250.2 19.2 164 30-198 16-219 (445)
13 cd00714 GFAT Glutamine amidotr 100.0 1.8E-32 3.9E-37 224.4 19.5 163 30-197 15-215 (215)
14 PRK07631 amidophosphoribosyltr 100.0 9.9E-33 2.1E-37 247.9 19.4 163 30-198 26-228 (475)
15 PRK06388 amidophosphoribosyltr 100.0 2.8E-32 6E-37 245.1 18.4 167 29-198 33-236 (474)
16 PRK07272 amidophosphoribosyltr 100.0 4.6E-32 1E-36 244.1 19.7 167 30-198 26-230 (484)
17 PRK07349 amidophosphoribosyltr 100.0 1.9E-31 4.2E-36 240.7 19.9 165 32-198 51-257 (500)
18 PRK06781 amidophosphoribosyltr 100.0 1.7E-31 3.8E-36 240.0 19.5 163 30-198 26-228 (471)
19 KOG0571 Asparagine synthase (g 100.0 8.7E-33 1.9E-37 239.6 10.6 163 27-197 16-182 (543)
20 PRK08341 amidophosphoribosyltr 100.0 2.8E-31 6.1E-36 237.0 20.1 165 29-198 17-217 (442)
21 PLN02440 amidophosphoribosyltr 100.0 2.3E-31 5.1E-36 240.1 19.1 167 30-198 16-219 (479)
22 PRK09123 amidophosphoribosyltr 100.0 2.3E-31 5E-36 239.7 18.8 166 30-198 36-239 (479)
23 PRK09246 amidophosphoribosyltr 100.0 4E-31 8.8E-36 239.8 18.6 168 30-198 16-232 (501)
24 cd01907 GlxB Glutamine amidotr 100.0 9.6E-31 2.1E-35 218.6 18.9 165 28-197 16-249 (249)
25 cd00715 GPATase_N Glutamine am 100.0 1.3E-30 2.8E-35 218.0 18.9 164 30-198 15-219 (252)
26 PRK07847 amidophosphoribosyltr 100.0 1.1E-30 2.3E-35 236.4 18.7 164 32-198 41-248 (510)
27 PRK05793 amidophosphoribosyltr 100.0 1.4E-30 3.1E-35 234.5 19.1 164 32-198 33-233 (469)
28 PRK00331 glucosamine--fructose 100.0 3.2E-30 6.9E-35 238.9 19.0 164 30-198 16-217 (604)
29 TIGR01134 purF amidophosphorib 100.0 5.4E-30 1.2E-34 229.4 18.7 166 30-198 16-219 (442)
30 cd00352 Gn_AT_II Glutamine ami 100.0 6.9E-30 1.5E-34 207.4 16.7 161 32-195 21-220 (220)
31 TIGR01135 glmS glucosamine--fr 100.0 9E-30 1.9E-34 236.0 18.4 164 30-198 15-216 (607)
32 PF13537 GATase_7: Glutamine a 100.0 2.7E-30 5.9E-35 194.7 10.9 118 59-180 1-125 (125)
33 cd01909 betaLS_CarA_N Glutamin 100.0 1.7E-29 3.7E-34 204.1 14.0 113 76-198 49-182 (199)
34 PTZ00295 glucosamine-fructose- 100.0 1.8E-28 4E-33 228.6 18.4 164 30-198 39-247 (640)
35 COG0034 PurF Glutamine phospho 100.0 2E-27 4.3E-32 208.5 16.0 165 31-197 22-225 (470)
36 PF13522 GATase_6: Glutamine a 99.9 2.3E-27 5.1E-32 180.6 12.3 123 43-174 1-133 (133)
37 PLN02981 glucosamine:fructose- 99.9 1.8E-25 3.8E-30 209.5 16.8 165 30-198 22-269 (680)
38 KOG0572 Glutamine phosphoribos 99.9 1.9E-24 4.1E-29 185.5 14.9 166 31-198 19-233 (474)
39 PTZ00394 glucosamine-fructose- 99.9 2.8E-24 6E-29 201.1 17.3 143 51-197 95-271 (670)
40 COG0449 GlmS Glucosamine 6-pho 99.9 1.8E-22 4E-27 183.7 12.2 139 52-197 65-213 (597)
41 cd00713 GltS Glutamine amidotr 99.8 1.3E-18 2.8E-23 153.6 15.9 139 51-198 199-393 (413)
42 cd01908 YafJ Glutamine amidotr 99.8 5.9E-18 1.3E-22 141.9 12.9 139 51-198 78-255 (257)
43 TIGR03442 conserved hypothetic 99.7 4.1E-17 9E-22 136.5 13.0 135 51-198 80-242 (251)
44 PF00310 GATase_2: Glutamine a 99.6 1.5E-15 3.2E-20 133.0 12.2 117 51-175 193-361 (361)
45 KOG0573 Asparagine synthase [A 99.6 9.5E-15 2.1E-19 128.3 12.1 148 30-192 19-171 (520)
46 KOG1268 Glucosamine 6-phosphat 99.4 3.4E-13 7.5E-18 120.4 6.4 133 27-164 55-203 (670)
47 PRK11750 gltB glutamate syntha 99.4 4.8E-12 1E-16 124.9 13.9 139 52-198 211-403 (1485)
48 PF13230 GATase_4: Glutamine a 98.8 5.9E-08 1.3E-12 82.2 11.1 135 53-198 71-249 (271)
49 PF09147 DUF1933: Domain of un 98.4 7.8E-06 1.7E-10 64.4 12.0 97 69-177 41-141 (201)
50 COG0067 GltB Glutamate synthas 98.3 1.7E-06 3.6E-11 75.9 7.1 125 52-183 201-349 (371)
51 COG0121 Predicted glutamine am 97.6 0.00069 1.5E-08 56.9 10.5 59 51-110 68-133 (252)
52 KOG0399 Glutamate synthase [Am 96.0 0.06 1.3E-06 53.7 10.0 70 127-198 406-477 (2142)
53 PF04566 RNA_pol_Rpb2_4: RNA p 88.5 1.7 3.7E-05 28.6 5.3 46 105-161 13-60 (63)
54 COG0067 GltB Glutamate synthas 74.2 6.6 0.00014 34.9 5.1 49 126-176 322-370 (371)
55 PF06339 Ectoine_synth: Ectoin 70.3 4.4 9.5E-05 30.5 2.6 54 144-198 23-88 (126)
56 KOG0876 Manganese superoxide d 55.6 60 0.0013 27.1 6.9 77 85-163 99-182 (234)
57 PF08973 TM1506: Domain of unk 43.6 8 0.00017 29.4 0.1 26 132-160 10-35 (134)
58 TIGR03823 FliZ flagellar regul 41.8 19 0.0004 28.2 1.8 18 77-94 33-50 (168)
59 PRK11582 flagella biosynthesis 41.1 20 0.00043 28.1 1.9 18 77-94 33-50 (169)
60 PRK07225 DNA-directed RNA poly 33.5 87 0.0019 29.8 5.3 48 105-163 19-68 (605)
61 TIGR03670 rpoB_arch DNA-direct 32.4 90 0.002 29.7 5.2 47 106-163 14-62 (599)
62 PF12594 DUF3764: Protein of u 23.8 40 0.00087 23.6 0.9 20 148-167 27-46 (86)
63 PF02531 PsaD: PsaD; InterPro 21.8 76 0.0017 23.9 2.1 66 130-197 24-96 (139)
64 COG4256 HemP Hemin uptake prot 21.4 54 0.0012 21.4 1.1 23 67-89 28-50 (63)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=1.6e-50 Score=329.12 Aligned_cols=191 Identities=55% Similarity=0.918 Sum_probs=173.1
Q ss_pred eeeecCCCCCCCcCccCCCCCCCCCCCCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCCCCCCCCcceEecCCcEEE
Q 029123 2 LAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYC 81 (198)
Q Consensus 2 l~vf~~~va~~p~~l~~~~~~~~~~~~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~~~~~~~qP~~~~~~~~~~ 81 (198)
||||+|+||+|||||+||.+..+ ++...++++.|....|+ +..+++++...|++++..++ ...|++++.+++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~---~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~ 75 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP---AKTAEELLKRFLSANPS-AVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC 75 (224)
T ss_pred CcccccccCCCChHHcCCCcccc---CCCHHHHHHHHHhcCCC-cEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence 89999999999999999886422 55668999999999995 77777988899999866654 568889988899999
Q ss_pred EEEEEEechHhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEE
Q 029123 82 MFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFW 161 (198)
Q Consensus 82 v~nG~i~N~~~L~~~l~~~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~ 161 (198)
++||+|||+.+|+++|+..++.+|+++|+++|++++++|++++++++++|+|+|||+|||+.++++++|||++|++||||
T Consensus 76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYy 155 (224)
T cd01910 76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYW 155 (224)
T ss_pred EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEE
Confidence 99999999999999998778889999999999977778988888999999999999999999999999999999999999
Q ss_pred EEECCceEEEEechhhHHhhcCcceEEeCCCcEEEe
Q 029123 162 GIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAI 197 (198)
Q Consensus 162 g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~ 197 (198)
+.+.+|.++||||+++|...|++++++|||||+|..
T Consensus 156 g~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s 191 (224)
T cd01910 156 GIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS 191 (224)
T ss_pred EEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC
Confidence 987679999999999999999888999999999863
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=3e-50 Score=322.53 Aligned_cols=194 Identities=62% Similarity=1.079 Sum_probs=184.0
Q ss_pred eeeecCCCCCCCcCccCCCCCCC-CCCCCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCCCCCCCCcceEecCCcEE
Q 029123 2 LAIFNKGLVNPPQELHSPASLSS-SRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVY 80 (198)
Q Consensus 2 l~vf~~~va~~p~~l~~~~~~~~-~~~~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~~~~~~~qP~~~~~~~~~ 80 (198)
||||+|+||++||||+||++..+ ..+++...++++.|....| ++.++++++.+.|+|++..++ ...|+.+...++++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p-~a~s~~~g~~~~lAys~~~~~-~l~pR~F~~~DdIf 78 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANP-NAFSMNFGDSAALAYSHSNQS-SLHPRLFAGVDDIF 78 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCC-CeEEEEcCCCEEEEEecCCCC-ccccccccccCCEE
Confidence 89999999999999999997544 3579999999999999999 888999999999999998866 56888888889999
Q ss_pred EEEEEEEechHhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEE
Q 029123 81 CMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLF 160 (198)
Q Consensus 81 ~v~nG~i~N~~~L~~~l~~~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~ 160 (198)
|+|.|.|.|...|+++|++.++.|++.+|+++|+++|++||||+++++++|+|.|||||||..++++|+|||+.|..|||
T Consensus 79 CiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLy 158 (228)
T PF12481_consen 79 CIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLY 158 (228)
T ss_pred EEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEe
Q 029123 161 WGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAI 197 (198)
Q Consensus 161 ~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~ 197 (198)
||.+.||.++||++.+.|+.+|+++++|||+||+|..
T Consensus 159 WGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S 195 (228)
T PF12481_consen 159 WGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSS 195 (228)
T ss_pred EEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEe
Confidence 9999999999999999999999999999999999975
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.4e-38 Score=290.73 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=145.5
Q ss_pred CHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhc--CCCCCCH
Q 029123 30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG--LSKGSNE 105 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~--~~~~~~D 105 (198)
.+.+|++.+.|||||.++++. .++++|||+|++ ++..+.||+++.++++++++||+|||+.+||++|. .+++.+|
T Consensus 20 ~~~~m~~~l~hRGPD~~g~~~-~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD 98 (578)
T PLN02549 20 RVLELSRRLRHRGPDWSGLYG-NEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSD 98 (578)
T ss_pred HHHHHHHHhcCcCCCccCEEE-eCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCH
Confidence 467899999999999999994 457899999998 55578999998888999999999999999999986 3889999
Q ss_pred HHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCcc
Q 029123 106 AMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKS 185 (198)
Q Consensus 106 ~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~ 185 (198)
+|+|+++|+ +||. +++++|+|+|||+|||..++++++|||++|++||||+...++.++||||+++|...| +.
T Consensus 99 ~Evil~ly~---~~G~----~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~-~~ 170 (578)
T PLN02549 99 CEVIAHLYE---EHGE----EFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDC-ER 170 (578)
T ss_pred HHHHHHHHH---HHHH----HHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHh-CC
Confidence 999999999 7896 899999999999999998999999999999999999987567899999999999888 45
Q ss_pred eEEeCCCcEEEe
Q 029123 186 FAPFPAGMSSAI 197 (198)
Q Consensus 186 ~~~~ppG~~~~~ 197 (198)
+.+|||||++.+
T Consensus 171 I~~lpPGh~l~~ 182 (578)
T PLN02549 171 FEEFPPGHYYSS 182 (578)
T ss_pred EEEeCCCeEEEE
Confidence 999999999976
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=3.1e-38 Score=289.21 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=146.0
Q ss_pred CCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC---CCCC
Q 029123 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---SKGS 103 (198)
Q Consensus 29 ~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~---~~~~ 103 (198)
....+|++++.|||||.++++ ..++++|||+|++ +...+.||+++.++++++++||+|||+.+|+++|.. +.+.
T Consensus 19 ~~~~~m~~~l~hRGPD~~g~~-~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~ 97 (554)
T PRK09431 19 KKALEMSRLMRHRGPDWSGIY-ASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTG 97 (554)
T ss_pred HHHHHHHHHhhCCCCCcCCEE-EeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCC
Confidence 357899999999999999999 4567899999999 555689999888889999999999999999999863 7899
Q ss_pred CHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcC
Q 029123 104 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCA 183 (198)
Q Consensus 104 ~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~ 183 (198)
+|+|+|+++|+ +||. +++++|+|+|||+|||..++++++|||++|++||||+..+++.++||||+++|...|
T Consensus 98 sD~Evil~ly~---~~G~----~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~- 169 (554)
T PRK09431 98 SDCEVILALYQ---EKGP----DFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVC- 169 (554)
T ss_pred CHHHHHHHHHH---HHHH----HHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhc-
Confidence 99999999999 8996 899999999999999999999999999999999999988548899999999999888
Q ss_pred cceEEeCCCcEEEe
Q 029123 184 KSFAPFPAGMSSAI 197 (198)
Q Consensus 184 ~~~~~~ppG~~~~~ 197 (198)
+.+..|||||++.+
T Consensus 170 ~~I~~lpPGh~l~~ 183 (554)
T PRK09431 170 KTIKEFPPGHYYWS 183 (554)
T ss_pred CCEEEECCCeEEEE
Confidence 45999999999875
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=7.6e-38 Score=287.99 Aligned_cols=162 Identities=23% Similarity=0.296 Sum_probs=144.7
Q ss_pred CHHHHHHHhHhcCCCCcceEEe----CCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----
Q 029123 30 HPEEIFNEFLISQSSNAFSINF----GNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---- 99 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~----~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~---- 99 (198)
...+|++++.|||||.++++.. ++.+.|||+||+ +...+.||+++.+++++++|||+|||+.+||++|..
T Consensus 20 ~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~ 99 (586)
T PTZ00077 20 KALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYK 99 (586)
T ss_pred HHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCc
Confidence 4567899999999999999843 256899999999 544689999988889999999999999999999852
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHH
Q 029123 100 SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIK 179 (198)
Q Consensus 100 ~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~ 179 (198)
+.+.+|+|+|+++|+ +||. .+++++|+|+|||+|||..++++++|||++|++||||+...+|.++||||+++|.
T Consensus 100 f~t~sD~Evil~ly~---~~G~---~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~ 173 (586)
T PTZ00077 100 FSSNSDCEIIGHLYK---EYGP---KDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALH 173 (586)
T ss_pred CCCCCHHHHHHHHHH---HhCH---HHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHH
Confidence 789999999999999 8994 3799999999999999999999999999999999999986567899999999999
Q ss_pred hhcCcceEEeCCCcEEEeC
Q 029123 180 ASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 180 ~~~~~~~~~~ppG~~~~~~ 198 (198)
..| +.+..|||||++.++
T Consensus 174 ~~~-~~I~~lpPGh~l~~~ 191 (586)
T PTZ00077 174 DQC-VEVKQFPPGHYYDQT 191 (586)
T ss_pred Hhc-CCEEEeCCCcEEEec
Confidence 888 459999999998763
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=277.32 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=147.0
Q ss_pred CCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CC
Q 029123 28 PKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SK 101 (198)
Q Consensus 28 ~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~ 101 (198)
...+.+|.+.+.|||||.++.| ...++.+||.|++ +...+.||+...+++++++|||||||+.+||+++.. +.
T Consensus 17 ~~~~~~m~~~l~hRGPD~~g~~-~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~ 95 (542)
T COG0367 17 KSIIEEMTKLLRHRGPDDSGVW-ISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFR 95 (542)
T ss_pred hHHHHHHHHHhhccCCCccccE-ecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceec
Confidence 4457999999999999999999 5778999999999 555678999886677999999999999999999973 89
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhh
Q 029123 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (198)
Q Consensus 102 ~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~ 181 (198)
+.+|+|+|+++|+ +||. +++++|+|+|||++||..++++|+||||+|++||||+..+ +.++||||.++|...
T Consensus 96 t~sDtEvil~~y~---~~g~----~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~~-~~l~faSE~Kal~~~ 167 (542)
T COG0367 96 TYSDTEVILTLYE---EWGE----DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSKN-ENLAFASEIKALLAH 167 (542)
T ss_pred cccchHHHHHHHH---HHHH----HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEecC-CceEEEechhhhhhC
Confidence 9999999999999 8996 8999999999999999999999999999999999999985 679999999999988
Q ss_pred -----cCcceEEeCCCcEEEeC
Q 029123 182 -----CAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 182 -----~~~~~~~~ppG~~~~~~ 198 (198)
|. .+.++|||+++.++
T Consensus 168 ~~~~~~~-~i~~l~pg~~l~~~ 188 (542)
T COG0367 168 PVVRFLR-DIKELPPGHLLEFT 188 (542)
T ss_pred CcccccC-CeEEcCCCcEEEEc
Confidence 74 59999999999764
No 7
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1.3e-35 Score=243.38 Aligned_cols=162 Identities=17% Similarity=0.274 Sum_probs=143.9
Q ss_pred CCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CC
Q 029123 28 PKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SK 101 (198)
Q Consensus 28 ~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~ 101 (198)
.....+|+..++|||||..+++ ..++++|||+|++ +...+.||+...++++++++||+|||+.+|+++|.. +.
T Consensus 16 ~~~~~~~~~~l~hRGpd~~~~~-~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~ 94 (220)
T cd00712 16 RATLERMLDALAHRGPDGSGIW-IDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFR 94 (220)
T ss_pred HHHHHHHHHHHhccCCCCCCEE-EECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCC
Confidence 3457899999999999999999 4467899999998 223689999988789999999999999999999864 58
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhh
Q 029123 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (198)
Q Consensus 102 ~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~ 181 (198)
+.+|+|+++++|+ ++|. +++++|+|+|||++||.++++++++||++|.+||||+..+ +.++||||.++|...
T Consensus 95 ~~sD~e~l~~~~~---~~g~----~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~~-~~~~~aSe~~~l~~~ 166 (220)
T cd00712 95 THSDTEVILHLYE---EWGE----DCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRDG-GGLAFASELKALLAL 166 (220)
T ss_pred CCChHHHHHHHHH---HHhH----HHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEEC-CEEEEEcchHHHHhc
Confidence 8999999999999 7885 9999999999999999988999999999999999999984 789999999999875
Q ss_pred cC--------------------------cceEEeCCCcEEEeC
Q 029123 182 CA--------------------------KSFAPFPAGMSSAIN 198 (198)
Q Consensus 182 ~~--------------------------~~~~~~ppG~~~~~~ 198 (198)
+. +.+..+||||++.++
T Consensus 167 ~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~ 209 (220)
T cd00712 167 PGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVD 209 (220)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEE
Confidence 43 368999999998763
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.2e-35 Score=265.96 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=142.9
Q ss_pred CHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCCC
Q 029123 30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGS 103 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~ 103 (198)
.+.+|++.++|||||+++.|..+++++|||+|++ +...+.||+.+.+++++++|||+|||+.+|+++|.. +.+.
T Consensus 17 ~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~ 96 (467)
T TIGR01536 17 AILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTD 96 (467)
T ss_pred HHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCC
Confidence 5789999999999999999844678999999999 444568999988889999999999999999999863 7899
Q ss_pred CHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhc-
Q 029123 104 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC- 182 (198)
Q Consensus 104 ~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~- 182 (198)
+|+|+++++|+ +||. +++++|+|+|||++||..+++++++||++|++||||+.. ++.++||||.++|...+
T Consensus 97 ~D~e~il~~y~---~~g~----~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~ 168 (467)
T TIGR01536 97 SDTEVILHLYE---EWGE----ECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPR 168 (467)
T ss_pred CHHHHHHHHHH---HHHH----HHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccc
Confidence 99999999999 8995 999999999999999999999999999999999999998 58899999999987543
Q ss_pred --------------------------CcceEEeCCCcEEEeC
Q 029123 183 --------------------------AKSFAPFPAGMSSAIN 198 (198)
Q Consensus 183 --------------------------~~~~~~~ppG~~~~~~ 198 (198)
.+.+..+|||++..++
T Consensus 169 ~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~ 210 (467)
T TIGR01536 169 NIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLE 210 (467)
T ss_pred cCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEe
Confidence 1346788999998763
No 9
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=7.2e-35 Score=269.11 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=142.1
Q ss_pred CCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CC-CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CC
Q 029123 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SK 101 (198)
Q Consensus 29 ~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~-~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~ 101 (198)
..+.+|++.|+|||||+.+.| .+++++|||+|++ +. ..+.||+.+.+++++++|||+|||+.+|+++|.. +.
T Consensus 18 ~~~~~m~~~l~hRGPD~~g~~-~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~ 96 (589)
T TIGR03104 18 AAVVRMLAVLAPRGPDAGGVH-AQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFF 96 (589)
T ss_pred HHHHHHHHhhcCCCCCcCCcE-ecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCccc
Confidence 457899999999999999999 6678999999999 33 2679999988888999999999999999999852 78
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhh
Q 029123 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (198)
Q Consensus 102 ~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~ 181 (198)
+.+|+|+++++|+ +||. +++++|+|+|||+|||..++++++|||++|++||||+.. ++.++||||+++|...
T Consensus 97 ~~sD~Evil~~y~---~~G~----~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~ 168 (589)
T TIGR03104 97 SDGDTEVILKAYH---AWGR----DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAA 168 (589)
T ss_pred CCCHHHHHHHHHH---HHHH----HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhC
Confidence 9999999999999 8996 999999999999999999999999999999999999988 5789999999998642
Q ss_pred c---------------------------CcceEEeCCCcEEEe
Q 029123 182 C---------------------------AKSFAPFPAGMSSAI 197 (198)
Q Consensus 182 ~---------------------------~~~~~~~ppG~~~~~ 197 (198)
. .+.+..+||||++++
T Consensus 169 ~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i 211 (589)
T TIGR03104 169 GGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTV 211 (589)
T ss_pred CCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEE
Confidence 1 134678999999876
No 10
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=2.7e-34 Score=229.45 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=130.7
Q ss_pred CCHHHHHHHhHhcCCCCcceEEeC---CcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcCCCCC
Q 029123 29 KHPEEIFNEFLISQSSNAFSINFG---NAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGS 103 (198)
Q Consensus 29 ~~~~~~~~~l~~rgpd~~~~~~~~---~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~~~~~ 103 (198)
....+|+++++|||||..+.+... ..+.+||+|++ +...+.||+...+++++++|||+|||+.+|++ +.
T Consensus 19 ~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~ 92 (181)
T cd03766 19 LLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNGELYNIDGVED------EE 92 (181)
T ss_pred hhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECCEEECcccccC------CC
Confidence 457899999999999999888653 35899999998 43467999988777899999999999999864 78
Q ss_pred CHHHHHHHHHHHHHhcCC--chHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEEC-CceEEEEechhhHHh
Q 029123 104 NEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA-DGSVVISDNLELIKA 180 (198)
Q Consensus 104 ~D~e~i~~~y~~~~~~g~--~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~-~g~~~faSe~~~L~~ 180 (198)
+|+|+++++|+ ++|. ..+.+++++|+|+|||++||..++++++||||+|+|||||+..+ ++.++|||+.....
T Consensus 93 sDtEvi~~l~~---~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~- 168 (181)
T cd03766 93 NDTEVIFELLA---NCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS- 168 (181)
T ss_pred CHHHHHHHHHH---HHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC-
Confidence 99999999999 6663 12248999999999999999988999999999999999999874 57899999976432
Q ss_pred hcCcceEEeCCCcEE
Q 029123 181 SCAKSFAPFPAGMSS 195 (198)
Q Consensus 181 ~~~~~~~~~ppG~~~ 195 (198)
. ..+.++||+-+|
T Consensus 169 -~-~~~~e~~~~g~~ 181 (181)
T cd03766 169 -G-SGFQEVLAGGIY 181 (181)
T ss_pred -C-CceEECCCCccC
Confidence 2 258999996553
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=1e-33 Score=263.30 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=142.7
Q ss_pred CCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCC
Q 029123 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKG 102 (198)
Q Consensus 29 ~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~ 102 (198)
..+.+|++.+.|||||.+++| .+++++|||+|++ +...+.||+++.+++++++|||+|||+.+|+++|.. +.+
T Consensus 19 ~~~~~m~~~l~hRGpD~~g~~-~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~ 97 (628)
T TIGR03108 19 DLLRRMNDAQAHRGPDGGGVH-VEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRT 97 (628)
T ss_pred HHHHHHHHHhcCCCCCccCeE-eeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCC
Confidence 357899999999999999999 6678999999999 434679999988889999999999999999999852 789
Q ss_pred CCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhc
Q 029123 103 SNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC 182 (198)
Q Consensus 103 ~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~ 182 (198)
.+|+|+++++|+ +||. +++++|+|+|||++||..+++++++||++|++||||+...++.++||||.++|....
T Consensus 98 ~sD~Evi~~~~~---~~g~----~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~ 170 (628)
T TIGR03108 98 RSDTEVIVHAWE---EWGE----ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHP 170 (628)
T ss_pred CChHHHHHHHHH---HHHH----HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCC
Confidence 999999999999 7995 999999999999999999999999999999999999976457899999999986421
Q ss_pred --------------------------CcceEEeCCCcEEEe
Q 029123 183 --------------------------AKSFAPFPAGMSSAI 197 (198)
Q Consensus 183 --------------------------~~~~~~~ppG~~~~~ 197 (198)
.+.+..+||||+..+
T Consensus 171 ~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~ 211 (628)
T TIGR03108 171 SLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTL 211 (628)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEE
Confidence 246899999999876
No 12
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.2e-33 Score=250.22 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=138.4
Q ss_pred CHHHHHHHhHhcCCCCcceEEeC--------------------------CcEEEEeecCC--CC--CCCCcceEe--cCC
Q 029123 30 HPEEIFNEFLISQSSNAFSINFG--------------------------NAAALAYVPPE--NP--NSVSQRWFC--GLH 77 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~--------------------------~~~~lg~~r~~--~~--~~~~qP~~~--~~~ 77 (198)
..-.++.+|+|||+|++++...+ ++++|||+||+ +. ..++||+.. .++
T Consensus 16 ~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g 95 (445)
T PRK08525 16 LAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLG 95 (445)
T ss_pred HHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCCCCCCCCCCCeEeecCCC
Confidence 34578999999999999987533 35799999999 22 267999987 567
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC---c-hHHHhhcccccceEEEEEECCCCEEEE
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP---Y-PAHQVLRDLDGSFGFVLYDCKAGTIFA 149 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~---~-~~~~~l~~L~G~Fafvi~D~~~~~l~~ 149 (198)
+++++|||+|+|+.+||++|.. +.+.+|+|+++++|. +++. . .+.+++++|+|+|||+++|. +++++
T Consensus 96 ~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~---~~~~~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~ 170 (445)
T PRK08525 96 EIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIA---RSKKESLKDRIIEALKKIIGAYCLVLLSR--SKMFA 170 (445)
T ss_pred CEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhcCCceEEEEEeC--CEEEE
Confidence 8999999999999999999853 889999999999998 3331 1 12579999999999999994 78999
Q ss_pred EEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 150 arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
+||++|++|||||..+++.++||||.++|.....+.+++++||++++++
T Consensus 171 ~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~ 219 (445)
T PRK08525 171 IRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFE 219 (445)
T ss_pred EECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEE
Confidence 9999999999999864568999999999977666678999999999874
No 13
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=1.8e-32 Score=224.39 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=137.5
Q ss_pred CHHHHHHHhHhcCCCCcceEEeC--------------------------CcEEEEeecCC--CC--CCCCcceEecCCcE
Q 029123 30 HPEEIFNEFLISQSSNAFSINFG--------------------------NAAALAYVPPE--NP--NSVSQRWFCGLHNV 79 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~--------------------------~~~~lg~~r~~--~~--~~~~qP~~~~~~~~ 79 (198)
....|+..++|||||+.+++..+ +.++|||+||+ +. ..+.||+...++++
T Consensus 15 ~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~~~ 94 (215)
T cd00714 15 ILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDGEI 94 (215)
T ss_pred HHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCCCCccCCCCCCcCCCCE
Confidence 46789999999999999988652 45789999999 32 25899998776789
Q ss_pred EEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEECCC-CEEEEEE
Q 029123 80 YCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKA-GTIFAAL 151 (198)
Q Consensus 80 ~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~---~~~~~l~~L~G~Fafvi~D~~~-~~l~~ar 151 (198)
+++|||+|+|+.+||++|.. +.+.+|+|+++++|....+.+.. ...++++.|+|.|||++||+.. ++++++|
T Consensus 95 ~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~R 174 (215)
T cd00714 95 AVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAAR 174 (215)
T ss_pred EEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEEEEE
Confidence 99999999999999999852 78999999999999843333221 1257999999999999999876 4999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEe
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAI 197 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~ 197 (198)
| .+||||+.. ++.++||||.++|...|.+ +..+.+|+++++
T Consensus 175 D---~~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~~~~~~~~~~ 215 (215)
T cd00714 175 N---GSPLVIGIG-DGENFVASDAPALLEHTRR-VIYLEDGDIAVI 215 (215)
T ss_pred C---CCCcEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCCEEeC
Confidence 9 399999987 5789999999999999955 999999999874
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.9e-33 Score=247.93 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=138.3
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCCC----CCCCcceEe--cCC
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWFC--GLH 77 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~~----~~~~qP~~~--~~~ 77 (198)
..-.++.+|+|||+|++++... .++++|||+||++. ..+.||++. .++
T Consensus 26 ~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g 105 (475)
T PRK07631 26 ITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTG 105 (475)
T ss_pred HHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCC
Confidence 3457889999999999997642 35689999999832 268999863 457
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc----hHHHhhcccccceEEEEEECCCCEEEE
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY----PAHQVLRDLDGSFGFVLYDCKAGTIFA 149 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~----~~~~~l~~L~G~Fafvi~D~~~~~l~~ 149 (198)
+++++|||+|+|+.+||++|.. +.+.+|+|+++++|. +++.. ...+++++|+|+|||+++|. +++++
T Consensus 106 ~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~---~~~~~~~~eai~~~~~~l~G~yalvi~~~--~~l~a 180 (475)
T PRK07631 106 SLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIK---RSGAPTLKEQIKNALSMLKGAYAFLLMTE--TELYV 180 (475)
T ss_pred CEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhCCCCceeeEEeC--CEEEE
Confidence 8999999999999999999853 889999999999998 44421 12579999999999999994 68999
Q ss_pred EEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 150 arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
+|||+|+||||||.. ++.++||||.++|...+.+.+++++|||+++++
T Consensus 181 aRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~ 228 (475)
T PRK07631 181 ALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIIN 228 (475)
T ss_pred EECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEE
Confidence 999999999999998 468999999999988777779999999999874
No 15
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.8e-32 Score=245.14 Aligned_cols=167 Identities=11% Similarity=0.075 Sum_probs=140.3
Q ss_pred CCHHHHHHHhHhcCCCCcceEEeC-------------------------CcEEEEeecCCCC----CCCCcceEe--cCC
Q 029123 29 KHPEEIFNEFLISQSSNAFSINFG-------------------------NAAALAYVPPENP----NSVSQRWFC--GLH 77 (198)
Q Consensus 29 ~~~~~~~~~l~~rgpd~~~~~~~~-------------------------~~~~lg~~r~~~~----~~~~qP~~~--~~~ 77 (198)
...-.++..|+|||+|+.++...+ ++++|||+||++. ..++||+.. ..+
T Consensus 33 ~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g 112 (474)
T PRK06388 33 SPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLG 112 (474)
T ss_pred HHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCCCCccCCCCeEeecCCC
Confidence 346789999999999999987633 3579999999922 367999873 346
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCCch-HHHhhcccccceEEEEEECCCCEEEEEE
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGPYP-AHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~-~~g~~~-~~~~l~~L~G~Fafvi~D~~~~~l~~ar 151 (198)
+++++|||+|+|+.+||++|.. |.+.+|+|+++++|.... +++... +.+++++|+|+|||++++. ++++++|
T Consensus 113 ~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a~R 190 (474)
T PRK06388 113 YIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMIN--DRLYAIR 190 (474)
T ss_pred CEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEEC--CEEEEEE
Confidence 7999999999999999999963 899999999999996432 445322 3679999999999999974 7999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|++|+||||||.. ++.++||||.++|.....+.+++++|||+++|+
T Consensus 191 Dp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~ 236 (474)
T PRK06388 191 DPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVF 236 (474)
T ss_pred CCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEE
Confidence 9999999999998 467999999999998777779999999999874
No 16
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.6e-32 Score=244.10 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=138.7
Q ss_pred CHHHHHHHhHhcCCCCcceEEeC---------------------------CcEEEEeecCCCC----CCCCcceEe--cC
Q 029123 30 HPEEIFNEFLISQSSNAFSINFG---------------------------NAAALAYVPPENP----NSVSQRWFC--GL 76 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~---------------------------~~~~lg~~r~~~~----~~~~qP~~~--~~ 76 (198)
..-.++.+|+|||+|++++...+ ++++|||+||++. ..++||+.. .+
T Consensus 26 ~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~ 105 (484)
T PRK07272 26 LTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHFHD 105 (484)
T ss_pred HHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeeccccCCCCcCCCCCEEeecCC
Confidence 34578999999999999987542 4579999999922 268999976 45
Q ss_pred CcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC-chHHHhhcccccceEEEEEECCCCEEEEEE
Q 029123 77 HNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (198)
Q Consensus 77 ~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~-~~~~~~l~~L~G~Fafvi~D~~~~~l~~ar 151 (198)
++++++|||+|+|+.+||++|.. +.+.+|+|+|+++|........ ....+++++|+|+|||++++. ++++++|
T Consensus 106 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~G~ya~~i~~~--~~l~a~R 183 (484)
T PRK07272 106 MQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTE--DKLIAAL 183 (484)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHccCceeEEEEEC--CEEEEEE
Confidence 78999999999999999999953 8999999999999983211000 123689999999999999984 7899999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
||+|+||||||..+++.++||||.++|...+.+.+++++|||+++++
T Consensus 184 Dp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~ 230 (484)
T PRK07272 184 DPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIID 230 (484)
T ss_pred CCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEE
Confidence 99999999999875567999999999987777778999999999874
No 17
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=1.9e-31 Score=240.72 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=136.8
Q ss_pred HHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCCC----CCCCcceEec--CCcE
Q 029123 32 EEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWFCG--LHNV 79 (198)
Q Consensus 32 ~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~~----~~~~qP~~~~--~~~~ 79 (198)
-.++.+|+|||+|++++... .++++|||+||++. ..++||+... .+++
T Consensus 51 ~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~i 130 (500)
T PRK07349 51 YFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPL 130 (500)
T ss_pred HHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCE
Confidence 46788999999999998543 24579999999922 3689999864 4789
Q ss_pred EEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEECCCCEEEEEEc
Q 029123 80 YCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (198)
Q Consensus 80 ~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~---~~~~~l~~L~G~Fafvi~D~~~~~l~~arD 152 (198)
+++|||+|+|+.+||++|.. +.+.+|+|+++++|....+.|.. ...+++++|+|.|||++++ .++++++||
T Consensus 131 alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~--~~~l~aaRD 208 (500)
T PRK07349 131 ALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGT--PEGLMGVRD 208 (500)
T ss_pred EEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEe--CCEEEEEEC
Confidence 99999999999999999853 89999999999999853333321 1267999999999999987 478999999
Q ss_pred CCCCceEEEEEEC---CceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 153 ADEGVRLFWGIAA---DGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 153 ~~G~~PL~~g~~~---~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++|+||||||... ++.++||||.++|.....+.+++++|||+++++
T Consensus 209 p~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~ 257 (500)
T PRK07349 209 PNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWIT 257 (500)
T ss_pred CCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEE
Confidence 9999999999862 357999999999987666779999999999874
No 18
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=1.7e-31 Score=239.96 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=137.1
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCCC----CCCCcceEe--cCC
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWFC--GLH 77 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~~----~~~~qP~~~--~~~ 77 (198)
..-.++.+|+|||+|+.++... .++++|||+||++. ..++||+.. .++
T Consensus 26 ~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g 105 (471)
T PRK06781 26 VSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDH 105 (471)
T ss_pred HHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCC
Confidence 3457899999999999997642 24578999999922 267999964 357
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc----hHHHhhcccccceEEEEEECCCCEEEE
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY----PAHQVLRDLDGSFGFVLYDCKAGTIFA 149 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~----~~~~~l~~L~G~Fafvi~D~~~~~l~~ 149 (198)
+++++|||+|+|+.+||++|.. +.+.+|+|+++++|. +++.. ...+++++|+|.|||++++. +++++
T Consensus 106 ~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~---~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 180 (471)
T PRK06781 106 SMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIK---RSTKDSLIESVKEALNKVKGAFAYLLLTG--NEMIV 180 (471)
T ss_pred CEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhCCCcEEEEEEEC--CEEEE
Confidence 8999999999999999999863 789999999999998 33311 22678999999999999994 78999
Q ss_pred EEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 150 arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
+||++|++|||||.. ++.++||||.++|.....+.+++++|||+++++
T Consensus 181 aRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~ 228 (471)
T PRK06781 181 ALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIIN 228 (471)
T ss_pred EECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEE
Confidence 999999999999998 467999999999987666778999999999874
No 19
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.98 E-value=8.7e-33 Score=239.59 Aligned_cols=163 Identities=22% Similarity=0.280 Sum_probs=146.9
Q ss_pred CCCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC--CCC
Q 029123 27 KPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL--SKG 102 (198)
Q Consensus 27 ~~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~--~~~ 102 (198)
+.....++...+.|||||-++..... ...+||.|++ ++..+.||++..+..+++..||||||+.+||+.+.. +++
T Consensus 16 ~~~~~l~ls~~~~hRgpd~sg~~~~~-~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T 94 (543)
T KOG0571|consen 16 KKPKALELSRRIRHRGPDWSGLAQRN-DNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQT 94 (543)
T ss_pred cChhhhhHHHhhcCCCCCcchhheec-cccccccceeEecCCcCCcccccCCCcEEEEECceeccHHHHHHHhhhccccc
Confidence 34456788999999999988887444 4479999999 777899999998888999999999999999999874 889
Q ss_pred CCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhc
Q 029123 103 SNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC 182 (198)
Q Consensus 103 ~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~ 182 (198)
.+|+|+|+++|+ +.|. .++...|+|.|||+++|...+++++|||++|++|||||...++.++||||.+.|...|
T Consensus 95 ~sDcEvIi~lY~---khg~---~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C 168 (543)
T KOG0571|consen 95 GSDCEVIIHLYE---KHGG---EQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDC 168 (543)
T ss_pred CCCceeeeehHh---hcCc---hhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhh
Confidence 999999999999 6754 5999999999999999999999999999999999999999889999999999999999
Q ss_pred CcceEEeCCCcEEEe
Q 029123 183 AKSFAPFPAGMSSAI 197 (198)
Q Consensus 183 ~~~~~~~ppG~~~~~ 197 (198)
.+ +..|||||+|..
T Consensus 169 ~~-i~~fpPgh~y~~ 182 (543)
T KOG0571|consen 169 EK-IESFPPGHYYTS 182 (543)
T ss_pred hc-eeecCCcceeec
Confidence 65 999999999975
No 20
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=2.8e-31 Score=237.00 Aligned_cols=165 Identities=14% Similarity=0.104 Sum_probs=137.3
Q ss_pred CCHHHHHHHhHhcCCCCcceEEe-------------------------CCcEEEEeecCC--CCCCCCcceEec--CCcE
Q 029123 29 KHPEEIFNEFLISQSSNAFSINF-------------------------GNAAALAYVPPE--NPNSVSQRWFCG--LHNV 79 (198)
Q Consensus 29 ~~~~~~~~~l~~rgpd~~~~~~~-------------------------~~~~~lg~~r~~--~~~~~~qP~~~~--~~~~ 79 (198)
...-.++..|+|||+|++++... .++++|||+||+ +...+.||+... ++.+
T Consensus 17 ~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~~~~~QP~~~~~~~g~i 96 (442)
T PRK08341 17 KKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGSLSEVQPLEVECCGYKI 96 (442)
T ss_pred HHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCCCcCcCCEEeecCCCCE
Confidence 35678999999999999998542 357899999999 333689998764 4689
Q ss_pred EEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHH-HhcCCc--hHHHhhcccccceEEEEEECCCCEEEEEEc
Q 029123 80 YCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTL-RDRGPY--PAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (198)
Q Consensus 80 ~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~-~~~g~~--~~~~~l~~L~G~Fafvi~D~~~~~l~~arD 152 (198)
+++|||+|+|+.+||++|.. +.+.+|+|++++++... .++|.. ...+++++|+|+|||++++. ++++++||
T Consensus 97 alvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD 174 (442)
T PRK08341 97 AIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIVARD 174 (442)
T ss_pred EEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEEEEc
Confidence 99999999999999999953 89999999998876432 244531 23678999999999999984 78999999
Q ss_pred CCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 153 ADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 153 ~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++|+||||||.. + .++||||.++|...+ +.+++++|||+++++
T Consensus 175 ~~GirPL~~G~~-~-~~~~ASE~~Al~~~~-~~v~~l~PGeiv~i~ 217 (442)
T PRK08341 175 PVGFRPLSYGEG-D-GHYFASEDSALRMFV-NEIRDVFPGEVFVVS 217 (442)
T ss_pred CCCceEEEEEEC-C-EEEEEeCcHHHHhhC-CeEEEeCCCEEEEEE
Confidence 999999999984 4 489999999998887 469999999999874
No 21
>PLN02440 amidophosphoribosyltransferase
Probab=99.98 E-value=2.3e-31 Score=240.06 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=138.6
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCC--C--CCCCcceEec--CC
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPEN--P--NSVSQRWFCG--LH 77 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~--~--~~~~qP~~~~--~~ 77 (198)
..-.++.+|+|||+|+.+++.. .++++|||+||++ . ..+.||+... .+
T Consensus 16 ~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g 95 (479)
T PLN02440 16 LCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFG 95 (479)
T ss_pred HHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccCCCCccCCCCceeecCCC
Confidence 4578999999999999998652 4568999999992 2 3789999863 36
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc-hHHHhhcccccceEEEEEECCCCEEEEEEc
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY-PAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~-~~~~~l~~L~G~Fafvi~D~~~~~l~~arD 152 (198)
+++++|||+|+|+.+||++|.. +.+.+|+|+++++|....+.... ...+++++|+|.|||++||. ++++++||
T Consensus 96 ~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~--~~l~a~RD 173 (479)
T PLN02440 96 SIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTE--DKLVAVRD 173 (479)
T ss_pred CEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEEC--CEEEEEEC
Confidence 7999999999999999999853 78999999999999732111111 12589999999999999995 57999999
Q ss_pred CCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 153 ADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 153 ~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++|+|||||+..+++.++||||.++|.....+.+++++|||+++++
T Consensus 174 ~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~ 219 (479)
T PLN02440 174 PHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVD 219 (479)
T ss_pred CCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEE
Confidence 9999999999765568999999999988766779999999999875
No 22
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=2.3e-31 Score=239.73 Aligned_cols=166 Identities=15% Similarity=0.140 Sum_probs=137.2
Q ss_pred CHHHHHHHhHhcCCCCcceEEeC---------------------------CcEEEEeecCCCC----CCCCcceEec--C
Q 029123 30 HPEEIFNEFLISQSSNAFSINFG---------------------------NAAALAYVPPENP----NSVSQRWFCG--L 76 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~---------------------------~~~~lg~~r~~~~----~~~~qP~~~~--~ 76 (198)
..-.++.+|+|||+|++++...+ ++++|||+||++. ..++||++.. .
T Consensus 36 ~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~ 115 (479)
T PRK09123 36 LTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAELEF 115 (479)
T ss_pred HHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccCCCCCcCCCCCceeecCC
Confidence 45668899999999999977532 3568999999922 3789999863 5
Q ss_pred CcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc-hHHHhhcccccceEEEEEECCCCEEEEEE
Q 029123 77 HNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY-PAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (198)
Q Consensus 77 ~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~-~~~~~l~~L~G~Fafvi~D~~~~~l~~ar 151 (198)
++++++|||+|+|+.+||++|.. +.+.+|+|+++++|....+.... ...+++++|+|+|||++|+. ++++++|
T Consensus 116 g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~G~ya~vil~~--~~l~a~R 193 (479)
T PRK09123 116 GGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTN--TKLIGAR 193 (479)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcceeEEEEEC--CEEEEEE
Confidence 78999999999999999999852 78999999999999832111111 12579999999999999995 6999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|++|++|||||.. ++.++||||.++|.....+.+++++|||+++++
T Consensus 194 D~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~ 239 (479)
T PRK09123 194 DPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVID 239 (479)
T ss_pred CCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEe
Confidence 9999999999998 478999999999976555678999999999875
No 23
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=4e-31 Score=239.75 Aligned_cols=168 Identities=12% Similarity=0.109 Sum_probs=137.8
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCCC----CCCCcceEe-cCCc
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWFC-GLHN 78 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~~----~~~~qP~~~-~~~~ 78 (198)
..-.++.+|+|||||+.+++.. .++++|||+||++. ..++||+.. ...+
T Consensus 16 ~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g 95 (501)
T PRK09246 16 SIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPYG 95 (501)
T ss_pred HHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCCC
Confidence 3567999999999999998863 46789999999922 368999974 4456
Q ss_pred EEEEEEEEEechHhHHHHhcC-----CCCCCHHHHHHHHHHHHHhc--C-----C---chHHHhhcccccceEEEEEECC
Q 029123 79 VYCMFMGSLNNLSSLNKQYGL-----SKGSNEAMFVIEAYRTLRDR--G-----P---YPAHQVLRDLDGSFGFVLYDCK 143 (198)
Q Consensus 79 ~~~v~nG~i~N~~~L~~~l~~-----~~~~~D~e~i~~~y~~~~~~--g-----~---~~~~~~l~~L~G~Fafvi~D~~ 143 (198)
++++|||+|+|+++||++|.. +.+.+|+|+++++|...... | . ..+.+++++|+|+|||+++..
T Consensus 96 ~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~~- 174 (501)
T PRK09246 96 ITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMII- 174 (501)
T ss_pred EEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEEec-
Confidence 999999999999999998842 68999999999999742111 2 1 112578999999999998753
Q ss_pred CCEEEEEEcCCCCceEEEEEEC---CceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 144 AGTIFAALDADEGVRLFWGIAA---DGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 144 ~~~l~~arD~~G~~PL~~g~~~---~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
.++++++||++|+||||||..+ ++.++||||.++|.....+.+++++|||+++|+
T Consensus 175 ~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~ 232 (501)
T PRK09246 175 GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYIT 232 (501)
T ss_pred CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEE
Confidence 4579999999999999999873 347999999999998777778999999999885
No 24
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.97 E-value=9.6e-31 Score=218.58 Aligned_cols=165 Identities=13% Similarity=0.014 Sum_probs=136.6
Q ss_pred CCCHHHHHHHhHhcCC-CCcceEEeC-----------------------------------CcEEEEeecCCCC----CC
Q 029123 28 PKHPEEIFNEFLISQS-SNAFSINFG-----------------------------------NAAALAYVPPENP----NS 67 (198)
Q Consensus 28 ~~~~~~~~~~l~~rgp-d~~~~~~~~-----------------------------------~~~~lg~~r~~~~----~~ 67 (198)
....-+|+..|+|||+ |+++++..+ +.++|||+||++. ..
T Consensus 16 ~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~~ 95 (249)
T cd01907 16 GALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWWY 95 (249)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCcc
Confidence 3456889999999999 999987542 4689999999832 25
Q ss_pred CCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCCc--------------------
Q 029123 68 VSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGPY-------------------- 122 (198)
Q Consensus 68 ~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~-~~g~~-------------------- 122 (198)
++||+.. ++++++|||+|+|+.+||++|.. +.+.+|+|+++++|.... ++|..
T Consensus 96 n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~ 173 (249)
T cd01907 96 GAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLA 173 (249)
T ss_pred CCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHH
Confidence 8999875 48999999999999999999853 789999999999987432 23320
Q ss_pred -hHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhc---CcceEEeCCCcEEEe
Q 029123 123 -PAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC---AKSFAPFPAGMSSAI 197 (198)
Q Consensus 123 -~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~---~~~~~~~ppG~~~~~ 197 (198)
....++++|+|+|||++++. +.++++||++|.|||||+.. ++.++||||.++|...+ .+.+.+++||+++++
T Consensus 174 ~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~~ 249 (249)
T cd01907 174 LRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVIW 249 (249)
T ss_pred HHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEeC
Confidence 11358899999999999995 57999999999999999998 57899999999998764 466899999999864
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.97 E-value=1.3e-30 Score=218.03 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=137.3
Q ss_pred CHHHHHHHhHhcCCCCcceEEeC--------------------------CcEEEEeecCCCC----CCCCcceEec--CC
Q 029123 30 HPEEIFNEFLISQSSNAFSINFG--------------------------NAAALAYVPPENP----NSVSQRWFCG--LH 77 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~--------------------------~~~~lg~~r~~~~----~~~~qP~~~~--~~ 77 (198)
....|++.++|||||+.+++..+ +.++|||+|+++. ..+.||+... .+
T Consensus 15 ~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~~ 94 (252)
T cd00715 15 LTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLG 94 (252)
T ss_pred HHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecCCC
Confidence 45689999999999999987543 3468999999922 2689998753 47
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc-----hHHHhhcccccceEEEEEECCCCEEE
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY-----PAHQVLRDLDGSFGFVLYDCKAGTIF 148 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~-----~~~~~l~~L~G~Fafvi~D~~~~~l~ 148 (198)
+++++|||+|+|+++|+++|.. +.+.+|+|+++++|. +++.. ...+++++|+|.|||+++|. ++++
T Consensus 95 ~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~---~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~ 169 (252)
T cd00715 95 GIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIA---RSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLI 169 (252)
T ss_pred cEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHH---HhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEE
Confidence 8999999999999999999852 678999999999998 45431 12579999999999999996 8999
Q ss_pred EEEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 149 AALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 149 ~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++||+.|.+||||+...++.++||||.++|.....+.+.++|||++++++
T Consensus 170 ~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~ 219 (252)
T cd00715 170 AVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVID 219 (252)
T ss_pred EEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEE
Confidence 99999999999999984378999999999987544568999999999874
No 26
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=236.43 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=135.3
Q ss_pred HHHHHHhHhcCCCCcceEEeC--------------------------CcEEEEeecCCCC----CCCCcceEec---CCc
Q 029123 32 EEIFNEFLISQSSNAFSINFG--------------------------NAAALAYVPPENP----NSVSQRWFCG---LHN 78 (198)
Q Consensus 32 ~~~~~~l~~rgpd~~~~~~~~--------------------------~~~~lg~~r~~~~----~~~~qP~~~~---~~~ 78 (198)
-.++.+|+|||+|+.++...+ ++++|||+||++. ..++||++.. .++
T Consensus 41 ~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ 120 (510)
T PRK07847 41 YYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGG 120 (510)
T ss_pred HHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCC
Confidence 467889999999999975432 3569999999932 2579998753 578
Q ss_pred EEEEEEEEEechHhHHHHhcC---------CCCCCHHHHHHHHHHHHHhcCCc--hHHHhhcccccceEEEEEECCCCEE
Q 029123 79 VYCMFMGSLNNLSSLNKQYGL---------SKGSNEAMFVIEAYRTLRDRGPY--PAHQVLRDLDGSFGFVLYDCKAGTI 147 (198)
Q Consensus 79 ~~~v~nG~i~N~~~L~~~l~~---------~~~~~D~e~i~~~y~~~~~~g~~--~~~~~l~~L~G~Fafvi~D~~~~~l 147 (198)
++++|||+|+|+.+||++|.. +.+.+|+|+|++++....+.+.. ...+++++|+|.|||+++|. +++
T Consensus 121 ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L 198 (510)
T PRK07847 121 VALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE--HTL 198 (510)
T ss_pred EEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--CEE
Confidence 999999999999999999842 67999999999999842211211 12579999999999999994 689
Q ss_pred EEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 148 FAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 148 ~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
+++||++|++||||+.. ++.++||||.++|.....+.++++||||+++++
T Consensus 199 ~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~ 248 (510)
T PRK07847 199 YAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAID 248 (510)
T ss_pred EEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEE
Confidence 99999999999999998 467999999999987644679999999999874
No 27
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.4e-30 Score=234.45 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=137.2
Q ss_pred HHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCCC----CCCCcceEec--CCcE
Q 029123 32 EEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWFCG--LHNV 79 (198)
Q Consensus 32 ~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~~----~~~~qP~~~~--~~~~ 79 (198)
-..+..|+|||+|+.++... .++++|||+||++. ..++||+... .+++
T Consensus 33 ~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~ 112 (469)
T PRK05793 33 YYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSI 112 (469)
T ss_pred HHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCE
Confidence 45888999999999998643 34678999999922 3679999864 5789
Q ss_pred EEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc-hHHHhhcccccceEEEEEECCCCEEEEEEcCC
Q 029123 80 YCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY-PAHQVLRDLDGSFGFVLYDCKAGTIFAALDAD 154 (198)
Q Consensus 80 ~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~-~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~ 154 (198)
+++|||+|+|+.+||++|.. +.+.+|+|++++++....+.+.. ...+++++|+|.||+++++. ++++++||+.
T Consensus 113 alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~ 190 (469)
T PRK05793 113 AIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGVRDPH 190 (469)
T ss_pred EEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEEECCC
Confidence 99999999999999999853 78999999999999842222211 22679999999999999984 7899999999
Q ss_pred CCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 155 EGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 155 G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|+|||||+.. ++.++||||.++|.....+.+++++|||+++++
T Consensus 191 GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~ 233 (469)
T PRK05793 191 GIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIID 233 (469)
T ss_pred CCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEE
Confidence 9999999998 467999999999987776778999999999874
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.97 E-value=3.2e-30 Score=238.92 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=139.5
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCC--CC--CCCCcceEecCCcE
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPE--NP--NSVSQRWFCGLHNV 79 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~--~~--~~~~qP~~~~~~~~ 79 (198)
..-+|+..++|||||+.+++.. .++++|||+||+ +. ..++||+....+++
T Consensus 16 ~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~~ 95 (604)
T PRK00331 16 ILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWATHGKPTERNAHPHTDCSGRI 95 (604)
T ss_pred HHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCCCCCCccccCCccccCCCCE
Confidence 4678999999999999998752 356799999999 22 35899998777899
Q ss_pred EEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEECCC-CEEEEEE
Q 029123 80 YCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKA-GTIFAAL 151 (198)
Q Consensus 80 ~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~---~~~~~l~~L~G~Fafvi~D~~~-~~l~~ar 151 (198)
+++|||+|+|+++||++|.. +.+.+|+|+++++|....++|.. .+.+++++|+|.|||++||+.+ ++++++|
T Consensus 96 ~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~R 175 (604)
T PRK00331 96 AVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTIVAAR 175 (604)
T ss_pred EEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEEEEEE
Confidence 99999999999999999852 78999999999999854344521 1267999999999999999886 8999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|+ +||||+.. ++.++||||.++|...+. .+.+++||++++++
T Consensus 176 d~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~i~ 217 (604)
T PRK00331 176 NG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIAVLT 217 (604)
T ss_pred CC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEEEEE
Confidence 96 99999997 477999999999998874 48999999999874
No 29
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=5.4e-30 Score=229.39 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=136.9
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCCCC----CCCCcceEe-cCCc
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWFC-GLHN 78 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~~~----~~~~qP~~~-~~~~ 78 (198)
....++.+|+|||+|+.+++.. .++++|||+||++. ..+.||+.. ..++
T Consensus 16 ~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g 95 (442)
T TIGR01134 16 LTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGG 95 (442)
T ss_pred HHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCCCCccCCCCEEEeCCCC
Confidence 3567999999999999998753 35689999999922 368999974 3456
Q ss_pred EEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEECCCCEEEEEE
Q 029123 79 VYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (198)
Q Consensus 79 ~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~---~~~~~l~~L~G~Fafvi~D~~~~~l~~ar 151 (198)
++++|||+|+|+++|+++|.. +.+.+|+|+++++|......+.. ...+++++|+|.|||+++| .++++++|
T Consensus 96 ~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~--~~~L~a~R 173 (442)
T TIGR01134 96 IALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMI--GDGLIAVR 173 (442)
T ss_pred EEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEE--CCEEEEEE
Confidence 999999999999999999853 78899999999999832110111 1257999999999999997 47999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|++|.+||||+.. ++.++||||.++|.....+.++++||||+++++
T Consensus 174 D~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~ 219 (442)
T TIGR01134 174 DPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVID 219 (442)
T ss_pred CCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEE
Confidence 9999999999988 478999999999986555679999999999874
No 30
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=6.9e-30 Score=207.37 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=138.0
Q ss_pred HHHHHHhHhcCCCCcceEEeC--------------------------CcEEEEeecCCCC----CCCCcceEecCCcEEE
Q 029123 32 EEIFNEFLISQSSNAFSINFG--------------------------NAAALAYVPPENP----NSVSQRWFCGLHNVYC 81 (198)
Q Consensus 32 ~~~~~~l~~rgpd~~~~~~~~--------------------------~~~~lg~~r~~~~----~~~~qP~~~~~~~~~~ 81 (198)
..++..+.+||||+.+++..+ +.++|||+|+++. ..+.||+....+++++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 479999999999999987553 2689999999932 3789998766568999
Q ss_pred EEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC-----chHHHhhcccccceEEEEEECCCCEEEEEEc
Q 029123 82 MFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP-----YPAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (198)
Q Consensus 82 v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~-----~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD 152 (198)
+|||+|+|+.+|++.+.. +.+.+|+|+++++|. +++. ..+.+++++++|.|+|+++|..+++++++||
T Consensus 101 ~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd 177 (220)
T cd00352 101 VHNGEIYNYRELREELEARGYRFEGESDSEVILHLLE---RLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARD 177 (220)
T ss_pred EECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHH---HHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEEC
Confidence 999999999999998863 788999999999999 5552 1125899999999999999988899999999
Q ss_pred CCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEE
Q 029123 153 ADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSS 195 (198)
Q Consensus 153 ~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~ 195 (198)
+.|.+||||+...++.++||||..++...+.+.+.++|||+++
T Consensus 178 ~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 178 RFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred CCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 9999999999983478999999999988765669999999974
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.97 E-value=9e-30 Score=236.03 Aligned_cols=164 Identities=10% Similarity=0.113 Sum_probs=137.7
Q ss_pred CHHHHHHHhHhcCCCCcceEEe--------------------------CCcEEEEeecCC--CC--CCCCcceEecCCcE
Q 029123 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPE--NP--NSVSQRWFCGLHNV 79 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~--------------------------~~~~~lg~~r~~--~~--~~~~qP~~~~~~~~ 79 (198)
...+|+..++|||||+++++.. .++++|||+||+ +. ..++||+...++++
T Consensus 15 ~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~ 94 (607)
T TIGR01135 15 ILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHPHTDEGGRI 94 (607)
T ss_pred HHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCCCCccCCCCcCcCCCCE
Confidence 4678999999999999998753 345789999999 22 25899998777889
Q ss_pred EEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEECCC-CEEEEEE
Q 029123 80 YCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKA-GTIFAAL 151 (198)
Q Consensus 80 ~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~---~~~~~l~~L~G~Fafvi~D~~~-~~l~~ar 151 (198)
+++|||+|+|+.+||++|.. +.+.+|+|+++++|....+.|.. ...+++++|+|+|||++||+.. ++++++|
T Consensus 95 ~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~R 174 (607)
T TIGR01135 95 AVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLVAAR 174 (607)
T ss_pred EEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEEEEEE
Confidence 99999999999999999852 78999999999999843222221 1257999999999999999875 5699999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|+ +||||+.. ++.++||||.++|...+. .+.++|||+++.++
T Consensus 175 d~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~~~ 216 (607)
T TIGR01135 175 SG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIAILT 216 (607)
T ss_pred CC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEEEEE
Confidence 96 99999987 578999999999998884 48899999999874
No 32
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.97 E-value=2.7e-30 Score=194.66 Aligned_cols=118 Identities=19% Similarity=0.365 Sum_probs=74.7
Q ss_pred eecCC--CCCCCCcceE-ecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHhhccc
Q 029123 59 YVPPE--NPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDL 131 (198)
Q Consensus 59 ~~r~~--~~~~~~qP~~-~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L 131 (198)
|+||+ +...+.||+. +.++++++++||+|||+++|+++|.. +.+.+|+|+++++|+...++|. +++++|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~----~~~~~l 76 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGE----DFLKRL 76 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGG----GGGGT-
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH----HHHHhC
Confidence 78888 3347799998 57788999999999999999999964 6789999999999984334785 999999
Q ss_pred ccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHh
Q 029123 132 DGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKA 180 (198)
Q Consensus 132 ~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~ 180 (198)
+|.|||++||+++++++++||++|+|||||+..+++.++||||+++|.+
T Consensus 77 ~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 77 DGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp -EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred CceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999999998999999999999999999995359999999999863
No 33
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.96 E-value=1.7e-29 Score=204.06 Aligned_cols=113 Identities=22% Similarity=0.303 Sum_probs=100.8
Q ss_pred CCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEE
Q 029123 76 LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (198)
Q Consensus 76 ~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~ar 151 (198)
.+++++++||+|||+.+|+++|.. +.+.+|+|+++++|+ +||. +++++|+|+|||+|||++ +++++||
T Consensus 49 ~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~---~~G~----~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 49 SETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLT---RLGL----HAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHH---HHhH----HHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 357999999999999999999853 688999999999999 8996 999999999999999998 9999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhc-----------------CcceEEeCCCcEEEeC
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASC-----------------AKSFAPFPAGMSSAIN 198 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~-----------------~~~~~~~ppG~~~~~~ 198 (198)
|++|++||||... +.++||||+++|...- .+.+..+|||++++++
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~ 182 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLT 182 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEe
Confidence 9999999999875 6799999999996431 1358999999998763
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1.8e-28 Score=228.56 Aligned_cols=164 Identities=10% Similarity=0.132 Sum_probs=137.8
Q ss_pred CHHHHHHHhHhcCCCCcceEEeC---------------------------------CcEEEEeecCC--CC--CCCCcce
Q 029123 30 HPEEIFNEFLISQSSNAFSINFG---------------------------------NAAALAYVPPE--NP--NSVSQRW 72 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~---------------------------------~~~~lg~~r~~--~~--~~~~qP~ 72 (198)
..-.++.+|+|||+|++++...+ ++++|||+||+ +. ..++||+
T Consensus 39 ~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~ 118 (640)
T PTZ00295 39 ILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPH 118 (640)
T ss_pred HHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCCCCC
Confidence 45679999999999998876532 23589999999 22 3689999
Q ss_pred EecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEECC-C
Q 029123 73 FCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCK-A 144 (198)
Q Consensus 73 ~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~---~~~~~l~~L~G~Fafvi~D~~-~ 144 (198)
....++++++|||+|+|+.+||++|.. +.+.+|+|+++++|....++|.. ...+++++|+|.|||++||.. .
T Consensus 119 ~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~ 198 (640)
T PTZ00295 119 CDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHKDNP 198 (640)
T ss_pred CCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEeCCC
Confidence 876789999999999999999999853 78999999999998754455532 236799999999999999976 4
Q ss_pred CEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 145 GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 145 ~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++++++||+ +|||||.. ++.++||||.++|...+.+ +..++||++++++
T Consensus 199 ~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei~~i~ 247 (640)
T PTZ00295 199 DSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEIAELS 247 (640)
T ss_pred CEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeEEEEE
Confidence 899999997 99999987 4679999999999988866 7789999999874
No 35
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=2e-27 Score=208.47 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=139.8
Q ss_pred HHHHHHHhHhcCCCCcceEEeCC---------------------------cEEEEeecCCCC----CCCCcceEecC--C
Q 029123 31 PEEIFNEFLISQSSNAFSINFGN---------------------------AAALAYVPPENP----NSVSQRWFCGL--H 77 (198)
Q Consensus 31 ~~~~~~~l~~rgpd~~~~~~~~~---------------------------~~~lg~~r~~~~----~~~~qP~~~~~--~ 77 (198)
.-..|-.|+|||.++.++...++ +++|||+||++. ..++||++... +
T Consensus 22 ~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g 101 (470)
T COG0034 22 TYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGG 101 (470)
T ss_pred HHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCCCCcccccccceEEecCCC
Confidence 45689999999999999876655 348999999932 37899998754 4
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHh-cCCc-hHHHhhcccccceEEEEEECCCCEEEEEE
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRD-RGPY-PAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~-~g~~-~~~~~l~~L~G~Fafvi~D~~~~~l~~ar 151 (198)
.+.++|||+|.|..+||++|.. +.+.+|+|++++++..-.. .+.. ...++++.++|.||+++... +.|+++|
T Consensus 102 ~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~--~~lia~R 179 (470)
T COG0034 102 GIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIK--DGLIAVR 179 (470)
T ss_pred cEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEEC--CeEEEEE
Confidence 6999999999999999999964 7899999999999984222 2221 23678899999999999985 5999999
Q ss_pred cCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEe
Q 029123 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAI 197 (198)
Q Consensus 152 D~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~ 197 (198)
||.|+|||.+|...||.++||||.++|....++.+++++|||++++
T Consensus 180 DP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i 225 (470)
T COG0034 180 DPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVII 225 (470)
T ss_pred CCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEE
Confidence 9999999999998667799999999999999899999999999984
No 36
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.95 E-value=2.3e-27 Score=180.63 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=106.9
Q ss_pred CCCcce--EEeCCcEEEEeecCCC---C-CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHH
Q 029123 43 SSNAFS--INFGNAAALAYVPPEN---P-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEA 112 (198)
Q Consensus 43 pd~~~~--~~~~~~~~lg~~r~~~---~-~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~ 112 (198)
||..+. + +.+.++|||+||++ + ..++||+...+++++++|||+|+|+.+|++++.. +.+.+|+|+++++
T Consensus 1 pd~~~~~~~-~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~l 79 (133)
T PF13522_consen 1 PDFEGLASW-LDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAAL 79 (133)
T ss_pred CChHHHHHh-cCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 455554 3 57789999999992 2 3456999666788999999999999999999874 7889999999999
Q ss_pred HHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEec
Q 029123 113 YRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDN 174 (198)
Q Consensus 113 y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe 174 (198)
++ ++|. ++++.|+|.|+|++|+...++++++||+.|.+||||+.. ++.++||||
T Consensus 80 i~---~~g~----~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 80 IH---RWGE----EALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HH---HHHH----HHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 97 7884 899999999999999988899999999999999999998 578999998
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.93 E-value=1.8e-25 Score=209.55 Aligned_cols=165 Identities=11% Similarity=0.097 Sum_probs=132.9
Q ss_pred CHHHHHHHhHhcCCCCcceEEe-----------------------------------------CCcEEEEeecCC--CC-
Q 029123 30 HPEEIFNEFLISQSSNAFSINF-----------------------------------------GNAAALAYVPPE--NP- 65 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~-----------------------------------------~~~~~lg~~r~~--~~- 65 (198)
..-.-|..|.|||.|++++... .++++|||+||+ +.
T Consensus 22 ~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~~~~~~g~~~IGH~R~at~g~~ 101 (680)
T PLN02981 22 VLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPP 101 (680)
T ss_pred HHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccccccccccCCCCcEEEEEcccccCCCC
Confidence 4556788888898888777542 234799999999 22
Q ss_pred -CCCCcceEecC-CcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHH-HhcCCc--------hHHHhhcc
Q 029123 66 -NSVSQRWFCGL-HNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTL-RDRGPY--------PAHQVLRD 130 (198)
Q Consensus 66 -~~~~qP~~~~~-~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~-~~~g~~--------~~~~~l~~ 130 (198)
..++||+.... +.++++|||+|+|+.+||++|.. +.+.+|+|++++++... ..+|.. ...+++++
T Consensus 102 ~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~ 181 (680)
T PLN02981 102 APRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQ 181 (680)
T ss_pred CcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHh
Confidence 36789997643 67999999999999999999853 89999999999985532 144421 12579999
Q ss_pred cccceEEEEEECCC-CEEEEEEcCCCCceEEEEEEC--C---------------------ceEEEEechhhHHhhcCcce
Q 029123 131 LDGSFGFVLYDCKA-GTIFAALDADEGVRLFWGIAA--D---------------------GSVVISDNLELIKASCAKSF 186 (198)
Q Consensus 131 L~G~Fafvi~D~~~-~~l~~arD~~G~~PL~~g~~~--~---------------------g~~~faSe~~~L~~~~~~~~ 186 (198)
|+|+|||+++++.. ++++++||+ +||++|..+ + +.++||||.++|...+ +.+
T Consensus 182 l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~-~~~ 257 (680)
T PLN02981 182 LEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHT-KRV 257 (680)
T ss_pred ccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhc-CEE
Confidence 99999999999764 899999996 999999873 1 3699999999999885 669
Q ss_pred EEeCCCcEEEeC
Q 029123 187 APFPAGMSSAIN 198 (198)
Q Consensus 187 ~~~ppG~~~~~~ 198 (198)
.+++||++++++
T Consensus 258 ~~l~~gei~~i~ 269 (680)
T PLN02981 258 LVIEDNEVVHLK 269 (680)
T ss_pred EEECCCeEEEEE
Confidence 999999999874
No 38
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.9e-24 Score=185.47 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=136.4
Q ss_pred HHHHHHHhHhcCCCCcceEEeC---------------------------CcEEEEeecCCCC----CCCCcceEecC--C
Q 029123 31 PEEIFNEFLISQSSNAFSINFG---------------------------NAAALAYVPPENP----NSVSQRWFCGL--H 77 (198)
Q Consensus 31 ~~~~~~~l~~rgpd~~~~~~~~---------------------------~~~~lg~~r~~~~----~~~~qP~~~~~--~ 77 (198)
+....-.|+|||.++.++.+.+ ++.+|||+||++. ..+.|||+... +
T Consensus 19 l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G 98 (474)
T KOG0572|consen 19 LALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHG 98 (474)
T ss_pred HHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccccccccccccceEeeccCc
Confidence 3444568999999999887654 3577999999932 37899998754 5
Q ss_pred cEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHH-----HhcCCc---hHHHhhcccccceEEEEEECCCC
Q 029123 78 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTL-----RDRGPY---PAHQVLRDLDGSFGFVLYDCKAG 145 (198)
Q Consensus 78 ~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~-----~~~g~~---~~~~~l~~L~G~Fafvi~D~~~~ 145 (198)
.+.+.|||+|-|+++||+++.. +.+.+|+|+|++++..- +..++. .+.++.+.++|.||+++.-. +
T Consensus 99 ~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d 176 (474)
T KOG0572|consen 99 SLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTA--D 176 (474)
T ss_pred eEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCCceeEEEEEc--c
Confidence 5999999999999999999864 78999999999998521 112222 13689999999999999984 6
Q ss_pred EEEEEEcCCCCceEEEEEECCc----eEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 146 TIFAALDADEGVRLFWGIAADG----SVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 146 ~l~~arD~~G~~PL~~g~~~~g----~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++|+.|||+|.|||++|...+. .+++|||.+++....++-++++.|||++++.
T Consensus 177 ~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~ 233 (474)
T KOG0572|consen 177 KLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEIS 233 (474)
T ss_pred EEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEe
Confidence 7999999999999999986543 8999999999999888889999999999874
No 39
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.92 E-value=2.8e-24 Score=201.07 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=120.0
Q ss_pred eCCcEEEEeecCC--CC--CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCC
Q 029123 51 FGNAAALAYVPPE--NP--NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGP 121 (198)
Q Consensus 51 ~~~~~~lg~~r~~--~~--~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~-~~g~ 121 (198)
+.++++|||+||+ +. ..++||+...+++++++|||+|+|+.+||++|.. +.+.+|+|+++++++.+. ++|.
T Consensus 95 ~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~ 174 (670)
T PTZ00394 95 TSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGI 174 (670)
T ss_pred CCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCC
Confidence 3567899999999 32 3688999887788999999999999999999953 899999999998865432 4563
Q ss_pred -c---hHHHhhcccccceEEEEEECC-CCEEEEEEcCCCCceEEEEEECC--------------------ceEEEEechh
Q 029123 122 -Y---PAHQVLRDLDGSFGFVLYDCK-AGTIFAALDADEGVRLFWGIAAD--------------------GSVVISDNLE 176 (198)
Q Consensus 122 -~---~~~~~l~~L~G~Fafvi~D~~-~~~l~~arD~~G~~PL~~g~~~~--------------------g~~~faSe~~ 176 (198)
. .+.+++++|+|+|||++.+.. .++++++||+ +||++|..++ +.++||||..
T Consensus 175 ~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~ 251 (670)
T PTZ00394 175 HNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVN 251 (670)
T ss_pred CCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChH
Confidence 1 236899999999999998644 4899999998 9999999742 4799999999
Q ss_pred hHHhhcCcceEEeCCCcEEEe
Q 029123 177 LIKASCAKSFAPFPAGMSSAI 197 (198)
Q Consensus 177 ~L~~~~~~~~~~~ppG~~~~~ 197 (198)
+|...|. .+..+++|+++.+
T Consensus 252 a~~~~t~-~~~~l~dg~~~~~ 271 (670)
T PTZ00394 252 SFAEYTR-EVVFLEDGDIAHY 271 (670)
T ss_pred HHHHhhc-eEEEecCCeEEEE
Confidence 9999995 5999999999986
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=1.8e-22 Score=183.72 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=121.1
Q ss_pred CCcEEEEeecCC---CC-CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCch
Q 029123 52 GNAAALAYVPPE---NP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYP 123 (198)
Q Consensus 52 ~~~~~lg~~r~~---~~-~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~~ 123 (198)
.+.++||||||+ .| ..|+||+.+ +++++||||.|.|+.+||++|.. |+|++|+|+|.|+++...+.+...
T Consensus 65 ~~~~gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~ 142 (597)
T COG0449 65 IGGVGIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLE 142 (597)
T ss_pred CCceeeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHH
Confidence 467889999999 34 388999865 88999999999999999999973 999999999999998655444322
Q ss_pred -HHHhhcccccceEEEEEECCC-CEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEe
Q 029123 124 -AHQVLRDLDGSFGFVLYDCKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAI 197 (198)
Q Consensus 124 -~~~~l~~L~G~Fafvi~D~~~-~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~ 197 (198)
.+.++++|+|+||+++.|.+. +++++||.. .||..|.. +|..++||+..++...+.+ +.++.+|++.++
T Consensus 143 a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~dgd~~~~ 213 (597)
T COG0449 143 AVKKVLKRLEGSYALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEEGDIAKL 213 (597)
T ss_pred HHHHHHHHhcceeEEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhce-EEEeCCCCEEEE
Confidence 378999999999999999986 799999995 99999998 5788999999999999855 999999999876
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.80 E-value=1.3e-18 Score=153.64 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=109.3
Q ss_pred eCCcEEEEeecCCCC----CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC---------------------CCCCCH
Q 029123 51 FGNAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---------------------SKGSNE 105 (198)
Q Consensus 51 ~~~~~~lg~~r~~~~----~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~---------------------~~~~~D 105 (198)
+.+..+|+|+|+++. ...+||+. +++|||||.|+..+++.+.. ..+.||
T Consensus 199 ~~s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SD 272 (413)
T cd00713 199 FESAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSD 272 (413)
T ss_pred ceEEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCCh
Confidence 345788999999943 25789974 48999999998888776521 235899
Q ss_pred HHHHHHHHHHHHhcCCch--H-H-------------------------HhhcccccceEEEEEECCCCEEEEEEcCCCCc
Q 029123 106 AMFVIEAYRTLRDRGPYP--A-H-------------------------QVLRDLDGSFGFVLYDCKAGTIFAALDADEGV 157 (198)
Q Consensus 106 ~e~i~~~y~~~~~~g~~~--~-~-------------------------~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~ 157 (198)
++.+.++++.+...|... + . .+++.++|.||+++.| .+.++++|||+|.|
T Consensus 273 S~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~d--g~~i~a~rDrnGlR 350 (413)
T cd00713 273 SASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTD--GRQVGASLDRNGLR 350 (413)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEe--CCEEEEEeCCCCCc
Confidence 999999997554333211 0 1 4668899999999998 47899999999999
Q ss_pred eEEEEEECCceEEEEechhhHHhhcCcceE---EeCCCcEEEeC
Q 029123 158 RLFWGIAADGSVVISDNLELIKASCAKSFA---PFPAGMSSAIN 198 (198)
Q Consensus 158 PL~~g~~~~g~~~faSe~~~L~~~~~~~~~---~~ppG~~~~~~ 198 (198)
||+|+.++++.++||||..++.... +.+. ++.||+++++|
T Consensus 351 Pl~~~~t~d~~~v~ASE~gal~~~~-~~V~~kg~l~PGe~v~id 393 (413)
T cd00713 351 PARYVITKDGLLIMSSEVGVVDVPP-EKVVEKGRLGPGEMLLVD 393 (413)
T ss_pred ceEEEEECCCEEEEEeCCcccCCCc-ceeeecCCCCCCeEEEEE
Confidence 9999998767899999999996533 4465 89999999875
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.77 E-value=5.9e-18 Score=141.94 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=111.2
Q ss_pred eCCcEEEEeecCCCC----CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC-----CCCCCHHHHHHHHHHHHH-hcC
Q 029123 51 FGNAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL-----SKGSNEAMFVIEAYRTLR-DRG 120 (198)
Q Consensus 51 ~~~~~~lg~~r~~~~----~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~-----~~~~~D~e~i~~~y~~~~-~~g 120 (198)
+.+.++|||+|+++. ..+.|||.. ++++++|||.|.|+.+|++.+.. +.+.+|+|++++++.... +.+
T Consensus 78 ~~~~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~ 155 (257)
T cd01908 78 IKSPLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD 155 (257)
T ss_pred ccccEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcC
Confidence 356789999999922 378999875 48999999999999999988752 688999999999886432 222
Q ss_pred C------c-hHHHhhcccc-----cceEEEEEECCCCEEEEEEcCCCCceEEEEEEC-----------------CceEEE
Q 029123 121 P------Y-PAHQVLRDLD-----GSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA-----------------DGSVVI 171 (198)
Q Consensus 121 ~------~-~~~~~l~~L~-----G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~-----------------~g~~~f 171 (198)
. . .+.++++.|+ |.|+|++.|. ++++++||+. .+||||+... ++.++|
T Consensus 156 ~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 232 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVV 232 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEE
Confidence 1 1 2267888888 7899888884 7899999997 7999999863 368999
Q ss_pred EechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 172 SDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 172 aSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
|||.-+... .+.++|||++++++
T Consensus 233 aSE~l~~~~----~w~~v~~ge~~~i~ 255 (257)
T cd01908 233 ASEPLTDDE----GWTEVPPGELVVVS 255 (257)
T ss_pred EeCCCCCCC----CceEeCCCEEEEEe
Confidence 999887643 59999999999875
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.73 E-value=4.1e-17 Score=136.54 Aligned_cols=135 Identities=16% Similarity=0.220 Sum_probs=104.6
Q ss_pred eCCcEEEEeecCC--C-C-C-CCCcceEecCCcEEEEEEEEEechH-----hHHHHhc-----CCCCCCHHHHHHHHHHH
Q 029123 51 FGNAAALAYVPPE--N-P-N-SVSQRWFCGLHNVYCMFMGSLNNLS-----SLNKQYG-----LSKGSNEAMFVIEAYRT 115 (198)
Q Consensus 51 ~~~~~~lg~~r~~--~-~-~-~~~qP~~~~~~~~~~v~nG~i~N~~-----~L~~~l~-----~~~~~~D~e~i~~~y~~ 115 (198)
+.+.++|||+|++ + + . .++|||.. ++++++|||.|.|++ +|++++. .+.+.+|+|++.+++..
T Consensus 80 ~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~ 157 (251)
T TIGR03442 80 VESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLN 157 (251)
T ss_pred cccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHH
Confidence 3467889999998 2 2 2 68999873 789999999999986 5666553 26789999999988874
Q ss_pred HH-hcCCch----HHHhhcccccc-------eEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcC
Q 029123 116 LR-DRGPYP----AHQVLRDLDGS-------FGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCA 183 (198)
Q Consensus 116 ~~-~~g~~~----~~~~l~~L~G~-------Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~ 183 (198)
.. +..+.. +.++++.|.|. |+|++-| .+++++.||+. ||||+..+ +.++||||. | ..
T Consensus 158 ~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~~-~~~vvASEp--l---~~ 226 (251)
T TIGR03442 158 RLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKDP-EGVIVASEP--Y---DD 226 (251)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEcC-CEEEEEeCC--c---CC
Confidence 32 211111 25677888888 9999999 47999999985 99999874 679999998 3 33
Q ss_pred c-ceEEeCCCcEEEeC
Q 029123 184 K-SFAPFPAGMSSAIN 198 (198)
Q Consensus 184 ~-~~~~~ppG~~~~~~ 198 (198)
. .++++|||++++++
T Consensus 227 ~~~W~~v~pge~v~i~ 242 (251)
T TIGR03442 227 DPGWQDVPDRHLLSVS 242 (251)
T ss_pred CCCceEeCCCeEEEEE
Confidence 3 69999999999874
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.65 E-value=1.5e-15 Score=132.96 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=86.2
Q ss_pred eCCcEEEEeecCCCC----CCCCcceEecCCcEEEEEEEEEechHhHHHHhcC----CCC----------------CCHH
Q 029123 51 FGNAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKG----------------SNEA 106 (198)
Q Consensus 51 ~~~~~~lg~~r~~~~----~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~----------------~~D~ 106 (198)
+.++.+|+|+||++. ..++|||. +++|||+|.|...+++.+.. ..+ .||+
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 557899999999932 26799986 89999999999999888742 444 8999
Q ss_pred HHHHHHHHHHHhcCC--------------------ch--------HHHhhcccccceEEEEEECCCCEEEEEEcCCCCce
Q 029123 107 MFVIEAYRTLRDRGP--------------------YP--------AHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVR 158 (198)
Q Consensus 107 e~i~~~y~~~~~~g~--------------------~~--------~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~P 158 (198)
+.+.++++.+.+.|. .+ ...+++.++|.|++++.|. +.++++|||.|.||
T Consensus 267 ~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP 344 (361)
T PF00310_consen 267 EVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRP 344 (361)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S-
T ss_pred HHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcc
Confidence 999999886545550 00 1346788999999999974 57999999999999
Q ss_pred EEEEEECCceEEEEech
Q 029123 159 LFWGIAADGSVVISDNL 175 (198)
Q Consensus 159 L~~g~~~~g~~~faSe~ 175 (198)
+.|+.++|+.+++|||.
T Consensus 345 ~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 345 LRYGITEDGLVVLASEA 361 (361)
T ss_dssp -EEEEETTCEEEEESST
T ss_pred eEEEEECCCEEEEEeCC
Confidence 99999977899999984
No 45
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.60 E-value=9.5e-15 Score=128.26 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=107.6
Q ss_pred CHHHHHHHhHhcCCCCcceEEeCCc---EE-EEeec-CCCCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcCCCCCC
Q 029123 30 HPEEIFNEFLISQSSNAFSINFGNA---AA-LAYVP-PENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSN 104 (198)
Q Consensus 30 ~~~~~~~~l~~rgpd~~~~~~~~~~---~~-lg~~r-~~~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~~~~~~ 104 (198)
..++|.-.+.+||||.+..+..+.. +. .+++. +.. ....||+. .+++.++.|||+|||-+- .....
T Consensus 19 i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv-~d~~~vfl~NGeIyn~~~-------s~~~~ 89 (520)
T KOG0573|consen 19 ISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVV-EDDRYVFLFNGEIYNGEK-------SDTLF 89 (520)
T ss_pred hhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCcee-cccceEEEecceeccCCC-------ccccc
Confidence 3578899999999998877644332 12 22221 123 36689975 456699999999999643 34567
Q ss_pred HHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCc
Q 029123 105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAK 184 (198)
Q Consensus 105 D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~ 184 (198)
|+.++++....+.+.| .+.+.++.++|.|+|++||...+++|+.||++|+++|.|+....+...+.|... ..++
T Consensus 90 d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g----~~~~ 163 (520)
T KOG0573|consen 90 DTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVG----TSGK 163 (520)
T ss_pred hHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccc----cCCc
Confidence 9999998887543322 346888999999999999999999999999999999999998755444434322 2334
Q ss_pred ceEEeCCC
Q 029123 185 SFAPFPAG 192 (198)
Q Consensus 185 ~~~~~ppG 192 (198)
.+.++||+
T Consensus 164 ~i~e~~~~ 171 (520)
T KOG0573|consen 164 LIYEVPPV 171 (520)
T ss_pred cccccCch
Confidence 57788887
No 46
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.40 E-value=3.4e-13 Score=120.37 Aligned_cols=133 Identities=16% Similarity=0.256 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC---CC-CCCCcceEec-CCcEEEEEEEEEechHhHHHHhcC--
Q 029123 27 KPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE---NP-NSVSQRWFCG-LHNVYCMFMGSLNNLSSLNKQYGL-- 99 (198)
Q Consensus 27 ~~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~---~~-~~~~qP~~~~-~~~~~~v~nG~i~N~~~L~~~l~~-- 99 (198)
++..++.+...+.+...|-. ..+..+++|+||||+ .| ..|.||+.+. .+.++++|||.|.|+.+||..|..
T Consensus 55 ~~GkVkaL~e~i~~q~~~l~--~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG 132 (670)
T KOG1268|consen 55 QTGKVSSLKEEINNQNLNLD--EKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKG 132 (670)
T ss_pred ccCceeehhHHHhhcCcccc--eeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcC
Confidence 45566777778877755333 335678999999999 23 3789998754 467999999999999999999864
Q ss_pred --CCCCCHHHHHHHHHHHHHhcCC--ch----HHHhhcccccceEEEEEECC-CCEEEEEEcCCCCceEEEEEE
Q 029123 100 --SKGSNEAMFVIEAYRTLRDRGP--YP----AHQVLRDLDGSFGFVLYDCK-AGTIFAALDADEGVRLFWGIA 164 (198)
Q Consensus 100 --~~~~~D~e~i~~~y~~~~~~g~--~~----~~~~l~~L~G~Fafvi~D~~-~~~l~~arD~~G~~PL~~g~~ 164 (198)
|.+++|+|.++.++..+.+.-+ .. .+.++++|+|+|++++-... .+++.+.|+- .||..|..
T Consensus 133 ~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rrg---SPlliGvK 203 (670)
T KOG1268|consen 133 YVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKG---SPLLIGVK 203 (670)
T ss_pred ceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccC---Ccceeeec
Confidence 8899999999999986654433 11 36789999999999987765 4899999995 88888754
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.39 E-value=4.8e-12 Score=124.87 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=102.9
Q ss_pred CCcEEEEeecCCCC----CCCCcceEecCCcEEEEEEEEEe----chHhHHHH--h---------c----C-CCCCCHHH
Q 029123 52 GNAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLN----NLSSLNKQ--Y---------G----L-SKGSNEAM 107 (198)
Q Consensus 52 ~~~~~lg~~r~~~~----~~~~qP~~~~~~~~~~v~nG~i~----N~~~L~~~--l---------~----~-~~~~~D~e 107 (198)
.+..+|.|+|+++. ...+|||. .++|||||. |...++.+ . . . ....||++
T Consensus 211 ~s~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa 284 (1485)
T PRK11750 211 ESAICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSS 284 (1485)
T ss_pred eEEEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHH
Confidence 35678999999932 36799963 479999997 33332211 1 0 0 35678999
Q ss_pred HHHHHHHHHHhcCCc--------------------hH-H-------HhhcccccceEEEEEECCCCEEEEEEcCCCCceE
Q 029123 108 FVIEAYRTLRDRGPY--------------------PA-H-------QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRL 159 (198)
Q Consensus 108 ~i~~~y~~~~~~g~~--------------------~~-~-------~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL 159 (198)
.+-..++-|...|.. +. + .+++-++|.||+++.| .+.+++.|||+|.|||
T Consensus 285 ~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPl 362 (1485)
T PRK11750 285 SLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD--GRYAACNLDRNGLRPA 362 (1485)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe--CCEEEEecCCCCCccc
Confidence 888887755333320 00 1 2456689999999999 4799999999999999
Q ss_pred EEEEECCceEEEEechhhHHhhcCcceE--EeCCCcEEEeC
Q 029123 160 FWGIAADGSVVISDNLELIKASCAKSFA--PFPAGMSSAIN 198 (198)
Q Consensus 160 ~~g~~~~g~~~faSe~~~L~~~~~~~~~--~~ppG~~~~~~ 198 (198)
.|+.++|+.+++|||..++.....+.++ ++.||+++.+|
T Consensus 363 r~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 363 RYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred eEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 9999877789999999998766666677 99999999885
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.80 E-value=5.9e-08 Score=82.24 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=71.6
Q ss_pred CcEEEEeecCCCC----CCCCcceEec--CCcEEEEEEEEEechHhHH-HHhcCCCCCCHHHHHHHHHHH-HHhcCC---
Q 029123 53 NAAALAYVPPENP----NSVSQRWFCG--LHNVYCMFMGSLNNLSSLN-KQYGLSKGSNEAMFVIEAYRT-LRDRGP--- 121 (198)
Q Consensus 53 ~~~~lg~~r~~~~----~~~~qP~~~~--~~~~~~v~nG~i~N~~~L~-~~l~~~~~~~D~e~i~~~y~~-~~~~g~--- 121 (198)
+.+.|+|.|.++. ..+.|||... .++.+.+|||.|.+.+.++ ..|. ....+|+|.+..++-. +.+.+.
T Consensus 71 S~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~ 149 (271)
T PF13230_consen 71 SRLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAP 149 (271)
T ss_dssp EEEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--
T ss_pred CCEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCccc
Confidence 3567999999822 3789998753 2579999999999876554 2333 6789999999888753 323331
Q ss_pred chH-------HHhhcccc--cceEEEEEECCCCEEEEEEcCCCCceEEEE------------------------EECCce
Q 029123 122 YPA-------HQVLRDLD--GSFGFVLYDCKAGTIFAALDADEGVRLFWG------------------------IAADGS 168 (198)
Q Consensus 122 ~~~-------~~~l~~L~--G~Fafvi~D~~~~~l~~arD~~G~~PL~~g------------------------~~~~g~ 168 (198)
... .+..+.+. |.++|++-|. +++++.|+ +.|||. ...+..
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~----~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 223 (271)
T PF13230_consen 150 PALEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRY----TSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRA 223 (271)
T ss_dssp HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEE----ESSS----------------------EEEEETTTTE
T ss_pred ccHHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEc----CCeeEEeccccccccccccchhhhhhhhccCCCCCE
Confidence 111 23444444 6789999984 79999998 223332 112457
Q ss_pred EEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 169 VVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 169 ~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
++||||.=. . ...+.++|+|+++++.
T Consensus 224 ~vVaSePLt---~-~e~W~~vp~g~~l~~~ 249 (271)
T PF13230_consen 224 VVVASEPLT---D-DEDWEPVPPGSLLVFR 249 (271)
T ss_dssp EEEESS--------SS--EE--SSEEEE--
T ss_pred EEEEeccCC---C-CCCeEEcCCCcEEEEe
Confidence 789998543 1 2359999999999863
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.40 E-value=7.8e-06 Score=64.44 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=65.0
Q ss_pred CcceEecCCcEEEEEEEEEechHhHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCC
Q 029123 69 SQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKA 144 (198)
Q Consensus 69 ~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~----~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~ 144 (198)
-|.+.. ++-..-.-|.|||+.-|+.-.+. ....+|+|++...|. +-|. .++.--+|+|+|.|=|+ +
T Consensus 41 ~qk~~~--~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~---~lG~----~aLsLAEGdfcffiE~k-n 110 (201)
T PF09147_consen 41 FQKMRF--ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFT---RLGN----SALSLAEGDFCFFIEDK-N 110 (201)
T ss_dssp EEEEEE--TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHH---HH-G----GGGGG--SSEEEEEEET-T
T ss_pred eeEEEe--cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHH---Hhhh----hhhhhhcCceEEEEecC-C
Confidence 444433 34444456999999988877764 456799999999888 6785 89999999999999876 6
Q ss_pred CEEEEEEcCCCCceEEEEEECCceEEEEechhh
Q 029123 145 GTIFAALDADEGVRLFWGIAADGSVVISDNLEL 177 (198)
Q Consensus 145 ~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~ 177 (198)
+++.+.+|+-|..|.|.-.+ +..|+....|.
T Consensus 111 g~L~l~Tds~G~~pv~lV~~--~~~WiTn~LK~ 141 (201)
T PF09147_consen 111 GELTLITDSRGFNPVYLVQS--KFIWITNSLKL 141 (201)
T ss_dssp SEEEEEE-SSSSS-EEEEES--SSEEEES-HHH
T ss_pred CcEEEEecCCCCceEEEEec--CceEEecceEE
Confidence 89999999999999887654 35666665544
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.31 E-value=1.7e-06 Score=75.90 Aligned_cols=125 Identities=13% Similarity=-0.023 Sum_probs=81.4
Q ss_pred CCcEEEEeecCCCC----CCCCcceEecCCcEEEEEEEEEechHhHHHHhc----CCCCCCHHHHHHHHHHHHHhcCCc-
Q 029123 52 GNAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY- 122 (198)
Q Consensus 52 ~~~~~lg~~r~~~~----~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~----~~~~~~D~e~i~~~y~~~~~~g~~- 122 (198)
.+..+|+|+|+++. ...+||+. .++|||+|.++.-.++.+. .+.+.+|+|.+..++-.+.+.|..
T Consensus 201 ~s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs 274 (371)
T COG0067 201 KSAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDS 274 (371)
T ss_pred ceeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcc
Confidence 46788999999932 26789964 3599999997765555543 278888988888777432222210
Q ss_pred ----hHH----------HhhcccccceEEEEEECC-CCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcC
Q 029123 123 ----PAH----------QVLRDLDGSFGFVLYDCK-AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCA 183 (198)
Q Consensus 123 ----~~~----------~~l~~L~G~Fafvi~D~~-~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~ 183 (198)
++. .-...|.|.||++.-..- .+...+.+|+.+.+|.+-|-+ +..+.++|+..|++..++
T Consensus 275 ~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng 349 (371)
T COG0067 275 ASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG 349 (371)
T ss_pred hhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC
Confidence 011 223467777877754321 356677777777777777766 466777777777766554
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.62 E-value=0.00069 Score=56.92 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=40.5
Q ss_pred eCCcEEEEeecCCCC----CCCCcceEecC--CcEEEEEEEEEechHhH-HHHhcCCCCCCHHHHHH
Q 029123 51 FGNAAALAYVPPENP----NSVSQRWFCGL--HNVYCMFMGSLNNLSSL-NKQYGLSKGSNEAMFVI 110 (198)
Q Consensus 51 ~~~~~~lg~~r~~~~----~~~~qP~~~~~--~~~~~v~nG~i~N~~~L-~~~l~~~~~~~D~e~i~ 110 (198)
+.+.+.|+|+|.++. ..+.||++... ..++.+|||.|.++..+ ...+. +...+|.+...
T Consensus 68 i~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~~ 133 (252)
T COG0121 68 IKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAAF 133 (252)
T ss_pred cCccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccccccC-CCCcchHHHHH
Confidence 456789999999832 37899988653 35789999999998773 33332 34455555443
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.96 E-value=0.06 Score=53.74 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=49.7
Q ss_pred hhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCc--ceEEeCCCcEEEeC
Q 029123 127 VLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAK--SFAPFPAGMSSAIN 198 (198)
Q Consensus 127 ~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~--~~~~~ppG~~~~~~ 198 (198)
.++-.+|.=-+.+-| .+.+=+.-||.|.||-=|..+.|+.+++|||...+--.-.+ .=--+.||.++.+|
T Consensus 406 ~MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred cCCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 456788886665655 46788888999999998888878999999997665321111 11457788887764
No 53
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=88.45 E-value=1.7 Score=28.63 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCC--ceEEE
Q 029123 105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--VRLFW 161 (198)
Q Consensus 105 D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~--~PL~~ 161 (198)
|.+-++..++.+++.|. .-. .-+ +.+|...+++++..|. |+ |||+.
T Consensus 13 ~p~~l~~~lr~~RR~g~-----i~~----~vs-i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 13 DPEELVKTLRNLRRSGK-----ISK----EVS-IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp SHHHHHHHHHHHHHTTS-----S-T----TSE-EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred CHHHHHHHHHHHhhccC-----Ccc----eeE-EEEeccCCEEEEEccC-CcccceeEE
Confidence 45556677777777773 222 223 5688888999999998 87 88875
No 54
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=74.22 E-value=6.6 Score=34.92 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.1
Q ss_pred HhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechh
Q 029123 126 QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLE 176 (198)
Q Consensus 126 ~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~ 176 (198)
.+..-..|.=+.+++|. .++-+-+|+.|.||-=|..++|+.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 35567889889999994 68899999999999988888889999999864
No 55
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=70.26 E-value=4.4 Score=30.47 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCc------------eEEEEEECCceEEEEechhhHHhhcCcceEEeCCCcEEEeC
Q 029123 144 AGTIFAALDADEGV------------RLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN 198 (198)
Q Consensus 144 ~~~l~~arD~~G~~------------PL~~g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~~ 198 (198)
+++++++.|.+|.. .|.|...-.-.++++-+-. +.........++.||.+|.+|
T Consensus 23 SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Ge-v~~~~~G~~~~i~pGt~YaLd 88 (126)
T PF06339_consen 23 SRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGE-VEDLDTGEVHPIKPGTMYALD 88 (126)
T ss_pred EEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEE-EEEccCCcEEEcCCCeEEecC
Confidence 47899999988853 2222211111122222211 212212348999999999876
No 56
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=55.62 E-value=60 Score=27.05 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=52.0
Q ss_pred EEEechHhHHHHhcC-CCCCCHHHHHHHHHHHHHhcCCch-----HHHhhccccc-ceEEEEEECCCCEEEEEEcCCCCc
Q 029123 85 GSLNNLSSLNKQYGL-SKGSNEAMFVIEAYRTLRDRGPYP-----AHQVLRDLDG-SFGFVLYDCKAGTIFAALDADEGV 157 (198)
Q Consensus 85 G~i~N~~~L~~~l~~-~~~~~D~e~i~~~y~~~~~~g~~~-----~~~~l~~L~G-~Fafvi~D~~~~~l~~arD~~G~~ 157 (198)
|.|+|+.-..+-+.. -.+....+.++.+++. ++|... ....-..+.| -|.+.+++++.+++++.+-..-..
T Consensus 99 ~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~~T~Na~~ 176 (234)
T KOG0876|consen 99 GHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFILTTYNAGD 176 (234)
T ss_pred cccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEEecCCCCC
Confidence 578898877666653 1223444456666663 566521 1223344667 799999999878999999988889
Q ss_pred eEEEEE
Q 029123 158 RLFWGI 163 (198)
Q Consensus 158 PL~~g~ 163 (198)
||+|..
T Consensus 177 P~~~~t 182 (234)
T KOG0876|consen 177 PLVWTT 182 (234)
T ss_pred CeeccC
Confidence 999873
No 57
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=43.58 E-value=8 Score=29.44 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=18.2
Q ss_pred ccceEEEEEECCCCEEEEEEcCCCCceEE
Q 029123 132 DGSFGFVLYDCKAGTIFAALDADEGVRLF 160 (198)
Q Consensus 132 ~G~Fafvi~D~~~~~l~~arD~~G~~PL~ 160 (198)
+|.+++++++. ++++-..++ |++|||
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~r-Gv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDGR-GVKPLY 35 (134)
T ss_dssp HTT-SEEEESS--SEEEEE--S-TTHHHH
T ss_pred hCCceEEEEeC--CEEEEeCCC-ChHHHH
Confidence 46899999974 567766555 999998
No 58
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=41.81 E-value=19 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.7
Q ss_pred CcEEEEEEEEEechHhHH
Q 029123 77 HNVYCMFMGSLNNLSSLN 94 (198)
Q Consensus 77 ~~~~~v~nG~i~N~~~L~ 94 (198)
+++.+||||+|-|.+.+.
T Consensus 33 DRisLV~~gqiinK~~Ia 50 (168)
T TIGR03823 33 DRISLVFRGQIINKESIS 50 (168)
T ss_pred hheeeeecceeecHHHHH
Confidence 689999999999987664
No 59
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=41.10 E-value=20 Score=28.09 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=15.7
Q ss_pred CcEEEEEEEEEechHhHH
Q 029123 77 HNVYCMFMGSLNNLSSLN 94 (198)
Q Consensus 77 ~~~~~v~nG~i~N~~~L~ 94 (198)
+++.+||||+|-|.+.+.
T Consensus 33 DRisLV~~gqiinK~~Ia 50 (169)
T PRK11582 33 DRITLVFRGQIINKIAIS 50 (169)
T ss_pred hheeeeecceeecHHHHH
Confidence 689999999999987664
No 60
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated
Probab=33.54 E-value=87 Score=29.82 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCC--ceEEEEE
Q 029123 105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--VRLFWGI 163 (198)
Q Consensus 105 D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~--~PL~~g~ 163 (198)
|.+-+++.++.+++.|. +. .+.=+.||...+++++..|. |+ |||+.-.
T Consensus 19 ~~~~lv~~lR~lRr~g~---------i~-~~vsI~~~~~~~ei~I~tD~-GR~~RPl~iv~ 68 (605)
T PRK07225 19 DPEELVEEIREARRSGE---------IS-EEVNVSYKEETNEVIINTDA-GRARRPLIVVE 68 (605)
T ss_pred CHHHHHHHHHHHHccCC---------CC-CcEEEEEECCCCEEEEEccC-CccceeEEEEe
Confidence 34556677777666662 22 34446677777899999998 87 9998753
No 61
>TIGR03670 rpoB_arch DNA-directed RNA polymerase subunit B. This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Probab=32.40 E-value=90 Score=29.68 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCC--ceEEEEE
Q 029123 106 AMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--VRLFWGI 163 (198)
Q Consensus 106 ~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~--~PL~~g~ 163 (198)
.+-+++.++.+++.|. + ..+.=+.||...+++++..|+ |+ |||++-.
T Consensus 14 ~~~lv~~LR~lRr~g~---------i-~~~vsI~~~~~~~ei~I~tD~-GR~~RPl~iv~ 62 (599)
T TIGR03670 14 PEELVEEVRKLRRSGK---------L-SQEVNVAYYEETNEVYINCDA-GRIRRPLIVVE 62 (599)
T ss_pred HHHHHHHHHHHhCcCC---------C-CCcEEEEEeCCCCEEEEEcCC-CccceeEEEee
Confidence 4456666676656552 2 244456778777899999998 87 9999743
No 62
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=23.77 E-value=40 Score=23.64 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=15.5
Q ss_pred EEEEcCCCCceEEEEEECCc
Q 029123 148 FAALDADEGVRLFWGIAADG 167 (198)
Q Consensus 148 ~~arD~~G~~PL~~g~~~~g 167 (198)
-..++.+|++|||-|...|+
T Consensus 27 ~~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHHhcCCeEEEEecccCC
Confidence 34567899999999987653
No 63
>PF02531 PsaD: PsaD; InterPro: IPR003685 PsaD is a small, extrinsic polypeptide located on the stromal side (cytoplasmic side in cyanobacteria) of the photosystem I reaction centre complex. It is required for native assembly of PSI reaction clusters and is implicated in the electrostatic binding of ferredoxin within the reaction centre []. PsaD forms a dimer in solution which is bound by PsaE however PsaD is monomeric in its native complexed PSI environment [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSF_D 2O01_D 2WSC_D 2WSE_D 1JB0_D 3PCQ_D.
Probab=21.81 E-value=76 Score=23.93 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=43.2
Q ss_pred ccccceEEEEEECCCCEEE------EEEcCCCCceEEEEEECCceEEEEechhhHHhh-cCcceEEeCCCcEEEe
Q 029123 130 DLDGSFGFVLYDCKAGTIF------AALDADEGVRLFWGIAADGSVVISDNLELIKAS-CAKSFAPFPAGMSSAI 197 (198)
Q Consensus 130 ~L~G~Fafvi~D~~~~~l~------~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~-~~~~~~~~ppG~~~~~ 197 (198)
+.+-.||+. |...+.++| +|.-+.|..-||..+. +.+++..+-+..-..+ ..+.++-||-|+.-.+
T Consensus 24 e~EEkYaIT-Wts~keqvFEmPTGGAA~M~~G~NLlylARK-EQclALgtQLrtkfKI~dykIYRifp~Ge~~~l 96 (139)
T PF02531_consen 24 ETEEKYAIT-WTSPKEQVFEMPTGGAAIMREGENLLYLARK-EQCLALGTQLRTKFKIEDYKIYRIFPNGEVQYL 96 (139)
T ss_dssp CCT-EEEEE-EEESSSEEEETTTTCEEEE-SCCEEEEESSC-CCCCCCCCCTCCSCTS--EEEEEE-TT--CEEC
T ss_pred ccceeEEEE-ecCCcceeEeccCchhHhhhcCchhhhhHHH-HHHHHHHHHHhhheeeccceEEEEcCCCceEEe
Confidence 455578754 555567887 7888889888888876 5788888877763333 5577889999987653
No 64
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=21.39 E-value=54 Score=21.40 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=18.0
Q ss_pred CCCcceEecCCcEEEEEEEEEec
Q 029123 67 SVSQRWFCGLHNVYCMFMGSLNN 89 (198)
Q Consensus 67 ~~~qP~~~~~~~~~~v~nG~i~N 89 (198)
...|-++..++.+.+-|||.+|-
T Consensus 28 v~S~~Lfgg~~~i~I~H~Ga~Y~ 50 (63)
T COG4256 28 VSSQTLFGGDGKIIIDHDGAEYL 50 (63)
T ss_pred echhhcccCCCeEEEecCCceEE
Confidence 34555666778899999999995
Done!