BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029125
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 57 EKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSWK 116
+K++++G +GFVGS + EAL+RG V V + ++ S D
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV--KKADVSSLDEVC 62
Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
E G AVIS +N +Y + I + GV RF+ + A
Sbjct: 63 EVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLXVGGA 113
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTVA 84
++LV GG GF+GSHI + L RGL VA
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVA 28
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 44 EEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRG-LTVAXXXXXXXXXXXXXWANNV 102
+E E P + K+ + G GF+ SHI R G +A + +
Sbjct: 17 KELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE- 75
Query: 103 IWHQGNLLSSDSWKEALDGVTAVISC---VGGFG---SNSYMYKINGTA-NINAIRAASE 155
+H +L ++ + +GV V + +GG G SN + N T + N I AA
Sbjct: 76 -FHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 156 KGVKRFVYISAA 167
G+KRF Y S+A
Sbjct: 135 NGIKRFFYASSA 146
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 44 EEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRG-LTVAXXXXXXXXXXXXXWANNV 102
+E E P + K+ + G GF+ SHI R G +A + +
Sbjct: 17 KELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE- 75
Query: 103 IWHQGNLLSSDSWKEALDGVTAVISC---VGGFG---SNSYMYKINGTA-NINAIRAASE 155
+H +L ++ + +GV V + +GG G SN + N T + N I AA
Sbjct: 76 -FHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 156 KGVKRFVYISAA 167
G+KRF Y S+A
Sbjct: 135 NGIKRFFYASSA 146
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 44 EEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRG-LTVAXXXXXXXXXXXXXWANNV 102
+E E P + K+ + G GF+ SHI R G +A + +
Sbjct: 17 KELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE- 75
Query: 103 IWHQGNLLSSDSWKEALDGVTAVISC---VGGFG---SNSYMYKINGTA-NINAIRAASE 155
+H +L ++ + +GV V + +GG G SN + N T + N I AA
Sbjct: 76 -FHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 156 KGVKRFVYISAA 167
G+KRF Y S+A
Sbjct: 135 NGIKRFFYASSA 146
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 44 EEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRG-LTVAXXXXXXXXXXXXXWANNV 102
+E E P + K+ + G GF+ SHI R G +A + +
Sbjct: 17 KELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE- 75
Query: 103 IWHQGNLLSSDSWKEALDGVTAVISC---VGGFG---SNSYMYKINGTA-NINAIRAASE 155
+H +L ++ + +GV V + +GG G SN + N T + N I AA
Sbjct: 76 -FHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 156 KGVKRFVYISAA 167
G+KRF Y S+A
Sbjct: 135 NGIKRFFYASSA 146
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 58 KLLVLGGNGFVGSHICREALDRGL--------TVAXXXXXXXXXXXXXWANNVIWHQGNL 109
++L++G G++G H+ + +LD G + A A+ G++
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRF 161
S EA+ V VIS VG S +N I+A E G VKRF
Sbjct: 66 DDHASLVEAVKNVDVVISTVGSLQIES---------QVNIIKAIKEVGTVKRF 109
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 54 PPSEKLLVLGGNGFVGSHICREALDRGLTV--AXXXXXXXXXXXXXWANNVIWHQG---- 107
P +LV G NGFV SH+ + L+ G V W + G
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK---YPGRFET 65
Query: 108 ----NLLSSDSWKEALDGVTAV--ISCVGGFGSNSY----MYKINGTANINAIR-AASEK 156
++L ++ E + G V I+ V F SN Y I GT +NA+R AA+
Sbjct: 66 AVVEDMLKQGAYDEVIKGAAGVAHIASVVSF-SNKYDEVVTPAIGGT--LNALRAAAATP 122
Query: 157 GVKRFVYISA 166
VKRFV S+
Sbjct: 123 SVKRFVLTSS 132
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 23/130 (17%)
Query: 54 PPSEKLLVLGGNGFVGSHICREALDRGLTV--AXXXXXXXXXXXXXWANNVIWHQG---- 107
P +LV G NGFV SH+ + L+ G V W + G
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK---YPGRFET 65
Query: 108 ----NLLSSDSWKEALDGVTAV--ISCVGGFGSNSY----MYKINGTANINAIR-AASEK 156
+ L ++ E + G V I+ V F SN Y I GT +NA+R AA+
Sbjct: 66 AVVEDXLKQGAYDEVIKGAAGVAHIASVVSF-SNKYDEVVTPAIGGT--LNALRAAAATP 122
Query: 157 GVKRFVYISA 166
VKRFV S+
Sbjct: 123 SVKRFVLTSS 132
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 58 KLLVLGGNGFVGSHICREALDRG---LTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDS 114
K+L+ GG G++G+H+ + +L G + I +G L +
Sbjct: 9 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 68
Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
E + V VIS + F +KI + AI+ A +KRF+ +DFGV
Sbjct: 69 LVELMKKVDVVISAL-AFPQILDQFKI-----LEAIKVAG--NIKRFL---PSDFGV 114
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 58 KLLVLGGNGFVGSHICREALDRG---LTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDS 114
K+L+ GG G++G+H+ + +L G + I +G L +
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72
Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
E + V VIS + F +KI + AI+ A +KRF+ +DFGV
Sbjct: 73 LVELMKKVDVVISAL-AFPQILDQFKI-----LEAIKVAG--NIKRFL---PSDFGV 118
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 58 KLLVLGGNGFVGSHICREALDRG---LTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDS 114
K+L+ GG G++G+H+ + +L G + I +G L +
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72
Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
E + V VIS + F +KI + AI+ A +KRF+ +DFGV
Sbjct: 73 LVELMKKVDVVISAL-AFPQILDQFKI-----LEAIKVAG--NIKRFL---PSDFGV 118
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 107 GNLLSSDSWKEALDGVTAVISCVGGFGS-----NSYMYKINGTANINAIRAASEKGVKRF 161
G+L + +A+ GV+AV+ +G F S M+ +N + AAS GV+RF
Sbjct: 63 GSLEDGQALSDAIMGVSAVLH-LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRF 121
Query: 162 VYISAAD 168
V+ S+ +
Sbjct: 122 VFASSGE 128
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 59 LLVLGGNGFVGSHICREALDRGLTV 83
+L+ GG G++GSH ++ +D GL+V
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSV 28
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
++LV GG+G++GSH C + L G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 30 LSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVL----GGNGFVGSHICREALD 78
L T N ++E KV +P P E LLV+ G NG V + I +EA++
Sbjct: 198 LHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVN 250
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 58 KLLVLGGNGFVGSHICREALDRG---LTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDS 114
K+L+ GG G++G+H+ + +L G + I +G L +
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72
Query: 115 WKEALDGVTAVISCVGGFGSNSYM--YKINGTANINAIRAASEKGVKRFVYISAADFGV 171
E + V VIS + Y+ +KI + AI+ A +KRF+ +DFGV
Sbjct: 73 LVELMKKVDVVISAL---AVPQYLDQFKI-----LEAIKVAG--NIKRFL---PSDFGV 118
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 28/156 (17%)
Query: 57 EKLLVLGGNGFVGSHICREALDRG--LTVAXXXXXXXXXXXXXWANNVIWHQG-NLLSSD 113
+++L+ GG GFVGSH+ + + G +TV W I H+ L++ D
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW----IGHENFELINHD 61
Query: 114 SWKEALDGVTAVISCVGGFGSNSYMY------KINGTANINAIRAASEKGVKRFVYISAA 167
+ V + +YMY K N +N + A G + + ++
Sbjct: 62 VVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE 121
Query: 168 DFGVANYLLQG---------------YYEGKRAAET 188
+G Q Y EGKR AET
Sbjct: 122 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 157
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 45 EAETVNVPPPPSEKLLVLGGNGFVGSHICREALD 78
EA+T ++K+L+LG NGF+G H+ + L+
Sbjct: 13 EAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILE 46
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 56 SEKLLVLGGNGFVGSHICREALDRG 80
+EK+LV GG G++GSH E L+ G
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAG 26
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 56 SEKLLVLGGNGFVGSHICREALDRG 80
+EK+LV GG G++GSH E L+ G
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAG 26
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 56 SEKLLVLGGNGFVGSHICREALDRG 80
+EK+LV GG G++GSH E L+ G
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAG 26
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 58 KLLVLGGNGFVGSHICREAL 77
+LLV GG GF+GSH R+ L
Sbjct: 2 RLLVTGGAGFIGSHFVRQLL 21
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 58 KLLVLGGNGFVGSHICREAL 77
+LLV GG GF+GSH R+ L
Sbjct: 2 RLLVTGGAGFIGSHFVRQLL 21
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 56 SEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNV--------IWHQG 107
SE + V G +GF+GS + L+RG TV ++ +W +
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW-KA 63
Query: 108 NLLSSDSWKEALDGVTAVISCVGGFGSNS-------YMYKINGTANINAIRAASEKGVKR 160
+L S+ EA+ G T V S I G I AA+ K V+R
Sbjct: 64 DLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAA-KTVRR 122
Query: 161 FVYISAA 167
V+ S+A
Sbjct: 123 LVFTSSA 129
>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From
Sulfolobus Solfataricus
Length = 344
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 35 NKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREAL 77
K EPL +E+ VN+P P E++L+ G G+ +CR L
Sbjct: 10 KKFSEPLSIED---VNIPEPQGEEVLIRIG----GAGVCRTDL 45
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 56 SEKLLVLGGNGFVGSHICREALDR 79
S KLLV GG GF+GS+ R L++
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEK 26
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 101 NVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK- 159
N I +GN L+ + KEAL+ + ++ + + +GS GT + ++AA + K
Sbjct: 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGS-------VGTGKTHLLQAAGNEAKKR 64
Query: 160 --RFVYISAADFGVA 172
R +Y SA DF A
Sbjct: 65 GYRVIYSSADDFAQA 79
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 101 NVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK- 159
N I +GN L+ + KEAL+ + ++ + + +GS GT + ++AA + K
Sbjct: 11 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGS-------VGTGKTHLLQAAGNEAKKR 63
Query: 160 --RFVYISAADFGVA 172
R +Y SA DF A
Sbjct: 64 GYRVIYSSADDFAQA 78
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 101 NVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK- 159
N I +GN L+ + KEAL+ + ++ + + +GS GT + ++AA + K
Sbjct: 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGS-------VGTGKTHLLQAAGNEAKKR 64
Query: 160 --RFVYISAADFGVA 172
R +Y SA DF A
Sbjct: 65 GYRVIYSSADDFAQA 79
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 59 LLVLGGNGFVGSHICREALDRGLT 82
++V GG GF+GS+I + D+G+T
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGIT 25
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 59 LLVLGGNGFVGSHICREALDRGLT 82
++V GG GF+GS+I + D+G+T
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGIT 72
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
KLL+ GG GF+GS++ AL +G+ +
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDL 28
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 26/129 (20%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX--------WANNVIWHQGNL 109
++ V GG GF+GS I + L+ G +V + + + +L
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSYM-YKINGTANINAIR-----------AASEKG 157
+ DS+ A++G CVG F + S + + ++ I R + K
Sbjct: 63 SNPDSFAAAIEG------CVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 158 VKRFVYISA 166
VKRF+Y S+
Sbjct: 117 VKRFIYTSS 125
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSY--MYKINGTANINAIRAASEKGVKRFVYISAA 167
L W+ + V ++ + Y ++ N IR A +K F Y+S A
Sbjct: 156 LDQPXWRRLAETVDLIVDSAAXVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTA 215
Query: 168 DFGVA 172
D G A
Sbjct: 216 DVGAA 220
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 58 KLLVLGGNGFVGSHICREALDRGL--TVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSW 115
++LV+G NG V ++ E ++G A++++ NL + +
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPELRERGASDIVV--ANL--EEDF 78
Query: 116 KEALDGVTAVISCVGG---FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA----- 167
A + AV+ G G++ + I+ I I+ A ++G+KRF+ +S+
Sbjct: 79 SHAFASIDAVVFAAGSGPHTGADKTIL-IDLWGAIKTIQEAEKRGIKRFIXVSSVGTVDP 137
Query: 168 DFGVANYLLQGYYEGKRAAETEL 190
D G N + Y KR A+ EL
Sbjct: 138 DQGPXNX--RHYLVAKRLADDEL 158
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 59 LLVLGGNGFVGSHICREALDRGLTV 83
+LV GG G++GSH E L G V
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDV 32
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin
Reductase From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin
Reductase From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 48 TVNVPPPPSEKLLVLGGNGFVGSHICREALD 78
TV+ P P ++L+ G GF+G + +LD
Sbjct: 2 TVSPVPSPKGRVLIAGATGFIGQFVATASLD 32
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
+++V GG GF+GSH+ + ++ G V
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
+++V GG GF+GSH+ + ++ G V
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 56 SEKLLVLGGNGFVGSHICREALDRG 80
S+ +LV GG G++GSH E ++ G
Sbjct: 11 SKIVLVTGGAGYIGSHTVVELIENG 35
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 59 LLVLGGNGFVGSHICREALDRGL 81
++V+GG GFVGS++ + L+ G+
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGV 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,494,700
Number of Sequences: 62578
Number of extensions: 204984
Number of successful extensions: 488
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 70
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)