BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029128
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 14/182 (7%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEA-AKKFGVRRVVLTSSISSIVPNPNW 60
GVFH+A+P + KDPE E++ P ++G L ++++ A VRR+V TSS ++ N
Sbjct: 80 GVFHVATPMDFES-KDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTV--NIQE 136
Query: 61 PQGKVIDETSWTDLDFCKSHKI---WYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP 117
Q V DE+ W+D++FC++ K+ Y +SKTLAE+AAW++A++N D + I P +GP
Sbjct: 137 HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGP 196
Query: 118 FPQPYVNASGAVLQRLLQGSKDTQEHYWL----GAVHVKDVAKAQVLLFETSAASGRYLC 173
F + S L L + HY + VH+ D+ A + LFE A GRY+C
Sbjct: 197 FIMSSMPPS---LITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYIC 253
Query: 174 TN 175
++
Sbjct: 254 SS 255
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSSISSIVPNPNWP 61
VFH+A+P +DPE +++ PA+QG +NV++A + V+RV+LTSS +++ N
Sbjct: 84 VFHVATPVHFAS-EDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDG 142
Query: 62 QGKVIDETSWTDLDFCKSHK--IW-YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPF 118
G V+DE +WTD++F S K W Y SKTLAEKAAW+FAE+N D++ + P G
Sbjct: 143 TGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSS 202
Query: 119 PQPYVNASGAVLQRLLQGSKDTQE-----HYWLGAV---HVKDVAKAQVLLFETSAASGR 170
V +S + L+ G++ G+V HV+DV +A + + E +ASGR
Sbjct: 203 LTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGR 262
Query: 171 YLCT---NGIYQFAEFAEK 186
Y+C + + A+F K
Sbjct: 263 YICCAANTSVPELAKFLSK 281
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 1 MGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAA-KKFGVRRVVLTSSISSIVPNPN 59
+G+FH ASP +PE+ + V G L +L+A V+R + TSS S++ + N
Sbjct: 76 VGIFHTASPIDFA-VSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAV--SFN 132
Query: 60 WPQGKVIDETSWTDLDFCKSHKIW---YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLG 116
V+DE+ W+D+D +S K + Y++SKTLAEKA EF E+NG DVV + +G
Sbjct: 133 GKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVG 192
Query: 117 PFPQPYVNASGAVLQRLLQGSKDTQEHYWLGAVHVKDVAKAQVLLFETSAASGRYLCTNG 176
F P + S L+ G K+ VHV DVA+A + L E S GRY C+
Sbjct: 193 RFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPF 252
Query: 177 IYQFAEFAE 185
I E ++
Sbjct: 253 IVPIEEMSQ 261
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSS-ISSIVPNPN 59
GV H+AS + + D E++ PA+ GTLN L AA V+R VLTSS +S+++P PN
Sbjct: 86 GVAHIASVVSFSNKYD---EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPN 142
Query: 60 WPQGKVIDETSWT--DLDFCKS-------HKIW-YSMSKTLAEKAAWEFAEKNGTDVV-- 107
+G +DE SW +D K+ +W Y+ SKT AE AAW+F ++N
Sbjct: 143 V-EGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLN 201
Query: 108 AIHPATSLGPFPQP 121
A+ P ++G P
Sbjct: 202 AVLPNYTIGTIFDP 215
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 16/113 (14%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSS-ISSIVPNPN 59
GV H+AS + + D E++ PA+ GTLN L AA V+R VLTSS +S+++P PN
Sbjct: 86 GVAHIASVVSFSNKYD---EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPN 142
Query: 60 WPQGKVIDETSWT--DLDFCKS-------HKIW-YSMSKTLAEKAAWEFAEKN 102
+G +DE SW +D K+ +W Y+ SKT AE AAW+F ++N
Sbjct: 143 V-EGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFXDEN 194
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWP 61
+FHLA + KDP + + GT N+LEAAK+ V +VV+ S+I V P P
Sbjct: 65 AIFHLAGILSAKGEKDPALAYKV-NMNGTYNILEAAKQHRVEKVVIPSTIG--VFGPETP 121
Query: 62 QGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQP 121
+ KV T + Y ++K AE + EK G DV ++ + +P
Sbjct: 122 KNKVPSIT-------ITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174
Query: 122 YVNASGAVLQRLLQGSKDTQEHYWLG------AVHVKDVAKAQVLLFETSAASGRYLCTN 175
+ ++ K + +L +++ D KA V L+E A + + N
Sbjct: 175 TAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYE--ADRDKLVLRN 232
Query: 176 G 176
G
Sbjct: 233 G 233
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWP 61
+FHLA + KDP + + GT N+LEAAK+ V +VV+ S+I V P P
Sbjct: 65 AIFHLAGILSAKGEKDPALAYKV-NMNGTYNILEAAKQHRVEKVVIPSTIG--VFGPETP 121
Query: 62 QGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQP 121
+ KV T + + ++K AE + EK G DV ++ + +P
Sbjct: 122 KNKVPSIT-------ITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174
Query: 122 YVNASGAVLQRLLQGSKDTQEHYWLG------AVHVKDVAKAQVLLFETSAASGRYLCTN 175
+ ++ K + +L +++ D KA V L+E A + + N
Sbjct: 175 TAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYE--ADRDKLVLRN 232
Query: 176 G 176
G
Sbjct: 233 G 233
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 3 VFHLASP----NTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNP 58
++HLASP N + +P K I GTLN+L AK+ G R +L +S S + +P
Sbjct: 73 IYHLASPASPPNYMYNPIKTLKTNTI----GTLNMLGLAKRVGAR--LLLASTSEVYGDP 126
Query: 59 N-WPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP 117
PQ E W ++ + Y K +AE + + ++ G +V + G
Sbjct: 127 EVHPQ----SEDYWGHVNPIGP-RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFG- 180
Query: 118 FPQPYVNASGAVLQRLLQGSK-DTQEHYWLGA-----VHVKDVAKAQVLLFETSAASGRY 171
P+ ++N V +LQ + + Y G+ +V D+ V L ++ +S
Sbjct: 181 -PRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVN 239
Query: 172 LCTNGIYQFAEFAEKVQ 188
L + EFA+ ++
Sbjct: 240 LGNPEEHTILEFAQLIK 256
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 3 VFHLASPNTLDD-PKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPN-W 60
++HLASP + + +P K L + GTLN L AK+ G R +L +S S + +P
Sbjct: 95 IYHLASPASPPNYXYNPIKTLKTNTI-GTLNXLGLAKRVGAR--LLLASTSEVYGDPEVH 151
Query: 61 PQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP 117
PQ E W ++ + Y K +AE + + ++ G +V + GP
Sbjct: 152 PQ----SEDYWGHVNPIGP-RACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGP 203
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 16/120 (13%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWP 61
G+ HL + + P ++L + G N+ EAA+ G R+V SS +I P
Sbjct: 66 GIIHLGGVSV----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYP--- 118
Query: 62 QGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQP 121
T+ D + + Y +SK E A + K + + I + FP+P
Sbjct: 119 ------RTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSC---FPKP 169
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
+ H A+ + +D VQGT +L+ A GV RVV S+ N
Sbjct: 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST--------NQVY 131
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQP 121
G ID SWT+ + + Y+ SK ++ A + G DV + GP+ P
Sbjct: 132 GS-IDSGSWTESSPLEPNSP-YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP 188
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
+ H A+ + +D VQGT +L+ A GV RVV S+
Sbjct: 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTDEVY-------- 131
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQP 121
ID SWT+ + + Y+ SK ++ A + G DV + GP+ P
Sbjct: 132 -GSIDSGSWTESSPLEPNSP-YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP 188
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 1 MGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNW 60
M V H A + + + + GT+ +LE K GV+ +V +SS +++ NP +
Sbjct: 83 MAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS-ATVYGNPQY 141
Query: 61 --------------PQGKVIDETSWTDLDFCKSHKIW 83
P GK D C++ K W
Sbjct: 142 LPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 203
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 161 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 216
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 1 MGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNW 60
M V H A + + + + GT+ +LE K GV+ +V +SS +++ NP +
Sbjct: 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS-ATVYGNPQY 141
Query: 61 --------------PQGKVIDETSWTDLDFCKSHKIW 83
P GK D C++ K W
Sbjct: 142 LPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 1 MGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNW 60
M V H A + + + + GT+ +LE K GV+ +V +SS +++ NP +
Sbjct: 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS-ATVYGNPQY 141
Query: 61 --------------PQGKVIDETSWTDLDFCKSHKIW 83
P GK D C++ K W
Sbjct: 142 LPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 84 YSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP----FPQPYVNASGAVLQRLLQ 135
YS+SK L ++ W + EK G P +GP + +S A+ Q +L
Sbjct: 463 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILN 518
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +S+ + NP P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDNPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T F KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPFGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +SS + NP P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +SS + NP P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 15 PKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDL 74
P D ++ + V+GT +L+AA GVRR V SS + P N P+ + E D
Sbjct: 92 PADRDRMFAV-NVEGTRRLLDAASAAGVRRFVFASS-GEVYPE-NRPEFLPVTE----DH 144
Query: 75 DFCKSHKIWYSMSKTLAEKAAWEFAEKNG 103
C + Y ++K L E+ F +++G
Sbjct: 145 PLCPNSP--YGLTKLLGEELV-RFHQRSG 170
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 3 VFHLAS-PNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSIS-----SIVP 56
V+H+A+ P+ ++P+ E+ V T +LEA +K GV R+V TS+ + ++P
Sbjct: 67 VWHIAANPDVRIGAENPD-EIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIP 125
Query: 57 NP-NWP 61
P ++P
Sbjct: 126 TPEDYP 131
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 2 GVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWP 61
G+ HL + + P +++L + G N+ EAA+ G R+V SS +I P
Sbjct: 67 GIVHLGGISV----EKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYP--- 119
Query: 62 QGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQP 121
+T D Y +SK E A + +K G + + S P P
Sbjct: 120 ------QTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVR-IGSCTPEPNN 172
Query: 122 Y 122
Y
Sbjct: 173 Y 173
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 27 VQGTLNVLEAAKKFGVRRVVLTSSIS-----SIVPNPNWPQGKVIDETSWTDLDFCKSHK 81
V T NVLE A++ GVR VV SS + ++P P +E + +
Sbjct: 90 VVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP--------EEEPYKPISV----- 136
Query: 82 IWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP 117
Y +K E +A G +A+ A +GP
Sbjct: 137 --YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP 170
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 27 VQGTLNVLEAAKKFGVRRVVLTSSIS-----SIVPNPNWPQGKVIDETSWTDLDFCKSHK 81
V T NVLE A++ GVR VV SS + ++P P +E + +
Sbjct: 86 VVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP--------EEEPYKPISV----- 132
Query: 82 IWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP 117
Y +K E +A G +A+ A +GP
Sbjct: 133 --YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP 166
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +S+ + NP P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSTATVYGDNPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +S+ + NP P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDNPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +SS + P P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T F KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPFGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|2ZPT|X Chain X, Crystal Structure Of Mouse Sulfotransferase Sult1d1
Complex With Pap
pdb|2ZVP|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And P-Nitrophenol
pdb|2ZVQ|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And Alpha-naphthol
pdb|2ZYT|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Paps
pdb|2ZYU|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Paps And P-Nitrophenyl Sulfate
pdb|2ZYV|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With PapsPAP AND P-Nitrophenol
pdb|2ZYW|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And P-Nitrophenol, Obtained By
Two-Step Soaking Method
Length = 295
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 18 PEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFC 77
P EL+IP G N +E R+V T ++P+ W I + D
Sbjct: 80 PFMELIIP---GITNGVEMLNNMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVV 136
Query: 78 KSHKIWYSMSKTLAEKAAW-EFAEKNGTDVVAIHP 111
S+ +Y M+K E W EF EK V+ P
Sbjct: 137 VSYYYFYQMAKIHPEPGTWEEFLEKFMAGQVSFGP 171
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 143 HYWLGAVHVKDVAKAQ---VLLFETSAAS-GRYLCTNGIYQFAEFAEKV 187
H WL V + K + V +F T A GRYLC +G + F E V
Sbjct: 188 HEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESV 236
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 143 HYWLGAVHVKDVAKAQ---VLLFETSAAS-GRYLCTNGIYQFAEFAEKV 187
H WL V + K + V +F T A GRYLC +G + F E V
Sbjct: 188 HEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESV 236
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +S + NP P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSVATVYGDNPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +S+ + P P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDQPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T F KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPFGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|3UG3|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG4|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG5|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
Length = 504
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 41 GVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAE 100
G R+ VL + VPN WP G + W D I + + AW+ E
Sbjct: 68 GFRKDVLEAVKRIKVPNLRWPGGNFVSNYHWED-------GIGPKDQRPVRFDLAWQQEE 120
Query: 101 KN--GTDVVAIHPATSLGPFPQPYVNASGAVLQRLLQ 135
N GTD I +G P +N L L
Sbjct: 121 TNRFGTDEF-IEYCREIGAEPYISINMGTGTLDEALH 156
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +SS + P P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|4ATW|A Chain A, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|B Chain B, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|C Chain C, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|D Chain D, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|E Chain E, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|F Chain F, The Crystal Structure Of Arabinofuranosidase
Length = 482
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 41 GVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAE 100
G R+ VL + VPN WP G + W D I + + AW+ E
Sbjct: 48 GFRKDVLEAVKRIKVPNLRWPGGNFVSNYHWED-------GIGPKDQRPVRFDLAWQQEE 100
Query: 101 KN--GTDVVAIHPATSLGPFPQPYVNASGAVLQRLLQ 135
N GTD I +G P +N L L
Sbjct: 101 TNRFGTDEF-IEYCREIGAEPYISINMGTGTLDEALH 136
>pdb|3S2C|A Chain A, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|B Chain B, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|C Chain C, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|D Chain D, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|E Chain E, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|F Chain F, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|G Chain G, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|H Chain H, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|I Chain I, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|J Chain J, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|K Chain K, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|L Chain L, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
Length = 484
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 41 GVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAE 100
G R+ VL + VPN WP G + W D I + + AW+ E
Sbjct: 48 GFRKDVLEAVKRIKVPNLRWPGGNFVSNYHWED-------GIGPKDQRPVRFDLAWQQEE 100
Query: 101 KN--GTDVVAIHPATSLGPFPQPYVNASGAVLQRLLQ 135
N GTD I +G P +N L L
Sbjct: 101 TNRFGTDEF-IEYCREIGAEPYISINMGTGTLDEALH 136
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 127 GAVLQRLLQGSKDTQEHYWLGAVHVKDVAKAQVLLFETSAASGRYLC 173
GAV+Q L Q E +W+G + +K V ++ +GRY C
Sbjct: 40 GAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD---------AGRYWC 77
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
+FHLA+ +++ D +K V GTL+VL+A VR L I +I + +
Sbjct: 78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDA-----VRDSNLDCRILTIGSSEEY-- 130
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGP 117
G ++ E S + Y +SK A ++ + G D++ +GP
Sbjct: 131 GMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGP 185
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 16 KDPEK--ELLIPAVQGTLNVLEAAKKFGVRRVV 46
KDP+ E VQG++NV +AA K GV+R++
Sbjct: 100 KDPDDWAEDAATNVQGSINVAKAASKAGVKRLL 132
>pdb|2GL3|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Tyrb10phe Glne11val Mutant
pdb|2GL3|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Tyrb10phe Glne11val Mutant
Length = 136
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 112 ATSLGPFPQPYVNASGAVLQRLLQGSKDTQEHYWLGAVHVKDVAKA 157
A +LG P+PY +GA ++++ QG T H+ L A H+ D A
Sbjct: 63 AAALGG-PEPY---TGAPMKQVHQGRGITMHHFSLVAGHLADALTA 104
>pdb|2GKM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn
Tyrb10phe Mutant
pdb|2GKM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn
Tyrb10phe Mutant
Length = 136
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 112 ATSLGPFPQPYVNASGAVLQRLLQGSKDTQEHYWLGAVHVKDVAKA 157
A +LG P+PY +GA ++++ QG T H+ L A H+ D A
Sbjct: 63 AAALGG-PEPY---TGAPMKQVHQGRGITMHHFSLVAGHLADALTA 104
>pdb|2GLN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11ala Mutant
pdb|2GLN|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11ala Mutant
Length = 136
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 112 ATSLGPFPQPYVNASGAVLQRLLQGSKDTQEHYWLGAVHVKDVAKA 157
A +LG P+PY +GA ++++ QG T H+ L A H+ D A
Sbjct: 63 AAALGG-PEPY---TGAPMKQVHQGRGITMHHFSLVAGHLADALTA 104
>pdb|2GKN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11val Mutant
pdb|2GKN|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11val Mutant
Length = 136
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 112 ATSLGPFPQPYVNASGAVLQRLLQGSKDTQEHYWLGAVHVKDVAKA 157
A +LG P+PY +GA ++++ QG T H+ L A H+ D A
Sbjct: 63 AAALGG-PEPY---TGAPMKQVHQGRGITMHHFSLVAGHLADALTA 104
>pdb|1IDR|A Chain A, Crystal Structure Of The Truncated-Hemoglobin-N From
Mycobacterium Tuberculosis
pdb|1IDR|B Chain B, Crystal Structure Of The Truncated-Hemoglobin-N From
Mycobacterium Tuberculosis
pdb|1S56|A Chain A, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Xe Atoms
pdb|1S56|B Chain B, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Xe Atoms
pdb|1S61|A Chain A, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Butyl-Isocyanide
pdb|1S61|B Chain B, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Butyl-Isocyanide
pdb|1RTE|A Chain A, X-Ray Structure Of Cyanide Derivative Of Truncated
Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis
pdb|1RTE|B Chain B, X-Ray Structure Of Cyanide Derivative Of Truncated
Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis
Length = 136
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 112 ATSLGPFPQPYVNASGAVLQRLLQGSKDTQEHYWLGAVHVKDVAKA 157
A +LG P+PY +GA ++++ QG T H+ L A H+ D A
Sbjct: 63 AAALGG-PEPY---TGAPMKQVHQGRGITMHHFSLVAGHLADALTA 104
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 35 EAAKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKA 94
EA +++GV ++V S+ +I P+G+ +ET W K Y+ SK E
Sbjct: 102 EACRQYGVEKLVFASTGGAIY--GEVPEGERAEET-WP-----PRPKSPYAASKAAFEHY 153
Query: 95 AWEFAEKNGTDVVAIHPATSLGPFPQPYVNASGAVL--QRLLQGSKDT--------QEHY 144
+ + G V++ GP P+ A + +R+L+G T E
Sbjct: 154 LSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGC 213
Query: 145 WLGAVHVKDVAKAQVL 160
V+V DVA+A L
Sbjct: 214 VRDYVYVGDVAEAHAL 229
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 3 VFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQ 62
V H A + + E V GTL ++ A + V+ + +S+ + P P
Sbjct: 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVYGDQPKIPY 136
Query: 63 GKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAA--WEFAEKNGTDVVAIHPATSLGPFPQ 120
+ T + KS K+ T +KA W A + V HP+ +G PQ
Sbjct: 137 VESF-PTGTPQSPYGKS-KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQ 194
Query: 121 PYVNASGAVLQRLLQGSKDTQEHYW-----------LGAVHVKDVAKAQVLLFETSA 166
N + ++ G +D+ + +HV D+A V+ E A
Sbjct: 195 GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLA 251
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase
pdb|1QZQ|B Chain B, Human Tyrosyl Dna Phosphodiesterase
Length = 483
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 75 DFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPFPQPYVNASGAVLQRLL 134
DF K W+ ++ KAAW EKNGT ++ + P + S V Q+
Sbjct: 378 DFSKI--AWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDSFKVKQKFF 435
Query: 135 QGSKD 139
GS++
Sbjct: 436 AGSQE 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,297,405
Number of Sequences: 62578
Number of extensions: 242042
Number of successful extensions: 667
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 60
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)