BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029129
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V85|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The Protein
           Q9siy3 From Arabidopsis Thaliana
          Length = 210

 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 126/210 (60%), Gaps = 12/210 (5%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNXXXXXXXXXXXXQRTVLRLR------ 54
           MEVE+KL L +AA+H +L +LL+ +H KTL Q N            +R VLRLR      
Sbjct: 1   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60

Query: 55  ------RDTRCVLCLKSKPSLVNGVSRVXXXXXXLDPVVAKECIENPSKLXXXXXXXXXX 108
                    RC++ LK+KP+L NG+SRV      ++  + KEC+E+P+KL          
Sbjct: 61  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120

Query: 109 XXXXXXXXXXXGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKK 168
                      G VCLGGFEN+R VYEW  + LEVDETKYDFGN YE+ECE+ +PE VK 
Sbjct: 121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180

Query: 169 LLEGFLNENGIEFEYSQMTKFAVFRAGKLP 198
           ++E FL E  IEF  S MTKFAVFR+GKLP
Sbjct: 181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,382,772
Number of Sequences: 62578
Number of extensions: 134262
Number of successful extensions: 374
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 1
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)