BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029129
         (198 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P45267|Y1598_HAEIN Uncharacterized protein HI_1598 OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1598 PE=4 SV=1
          Length = 352

 Score = 35.4 bits (80), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 16/101 (15%)

Query: 2   EVELKLCLKSAASHKQLISLLSQFHTKTLRQH------NLFFDTSTSFLSSQRTVLRLRR 55
           E+ELKL + S     +L   L++F   T+ +H      N ++D    FL+ Q+  LR+R+
Sbjct: 8   EIELKLAI-SPQIGIELPQYLAKF---TILEHQNLFLGNTYYDYPDHFLAKQKMGLRIRQ 63

Query: 56  -DTRCVLCLKSKPSLVNGV-SRVEEDEEELDPVVAKECIEN 94
            D    L LK+   +V+G+ SR E +     P++ KE   N
Sbjct: 64  EDQELTLTLKTNGKVVSGLHSRPEYNL----PLIEKETPTN 100


>sp|O31609|YJBK_BACSU Uncharacterized protein YjbK OS=Bacillus subtilis (strain 168)
           GN=yjbK PE=1 SV=1
          Length = 190

 Score = 33.5 bits (75), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 19/178 (10%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTRC 59
           +E+E K  L +    K + S L         Q N +FDT +  L  +   LR+RR + + 
Sbjct: 5   IEIEFKNML-TKQEFKNIASALQLTEKDFTDQKNHYFDTDSFALKQKHAALRIRRKNGKY 63

Query: 60  VLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEV 119
           VL LK +P+ V G+    +   E+  +      E P          V+    +  + ++ 
Sbjct: 64  VLTLK-EPADV-GLLETHQQLSEVSDLAGFSVPEGP----------VKDQLHKLQIDTD- 110

Query: 120 GLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSD----PEGVKKLLEGF 173
            +   G     R   E    ++ +D ++Y    +YE+E E++D     +  +KLL+ F
Sbjct: 111 AIQYFGSLATNRAEKETEKGLIVLDHSRYLNKEDYEIEFEAADWHEGRQAFEKLLQQF 168


>sp|Q9UX04|PYRDB_SULSO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
           OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617
           / JCM 11322 / P2) GN=pyrD PE=3 SV=1
          Length = 290

 Score = 32.7 bits (73), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 24/123 (19%)

Query: 68  SLVNGVSRVEEDEEELDPV-------VAKECIENPSKLFEIESRVVRRVREEFGVGSEVG 120
           +L+N +  +  D E   P+       V+  C      L+ I  R+++ V EE+GV     
Sbjct: 175 TLINTIKGLIIDVETFKPILYYGTGGVSGRC------LYPIALRIIKDVYEEYGVD---- 224

Query: 121 LVCLGGFENLRQVYEWNSLILEVDETKYDFG-NNYEVECESSDPEGVKKLLEGFLNENGI 179
           ++ +GG      VY+W  +I  +       G     +E   S  E ++K L+ +L E G+
Sbjct: 225 IIGVGG------VYDWTDVIGMLAAGAKLVGLGTVLIEKGFSVIEEIRKGLQSYLLEKGL 278

Query: 180 EFE 182
           +FE
Sbjct: 279 KFE 281


>sp|O46072|KZ_DROME Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster
           GN=kz PE=1 SV=1
          Length = 1192

 Score = 32.0 bits (71), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 22  LSQFHTKTLRQHNLFFDTST-SFLSSQRTVLRLRRDTRCVLCLKSKPS---LVNGVSRVE 77
           +++ + KTL+ HN   +     F++ Q+ V +L R  R        P+     NG    E
Sbjct: 459 VAEAYRKTLKIHNKLPEGGILIFVTGQQEVNQLVRKLRRTFPYHHAPTKDVAKNGKVSEE 518

Query: 78  EDEEELDPVVAKECIENPSKLFEIESRVVRRVRE 111
           E EE +D   A   +E+P +L     RV+R +R+
Sbjct: 519 EKEETIDD--AASTVEDPKELEFDMKRVIRNIRK 550


>sp|Q07834|YL032_YEAST KH domain-containing protein YLL032C OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YLL032C PE=1 SV=1
          Length = 825

 Score = 31.2 bits (69), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 15  HKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLC-LKSKPSLVNGV 73
           H+ +I         T+R+HN+F   S SF   Q  +  +R D   + C  K+K ++    
Sbjct: 494 HRPIIGTGGSLIQATMRKHNVFIQFSNSFNLPQNKISMIRYDNVIIRCPRKNKANICLAK 553

Query: 74  SRVEEDEEELDPVVAKECI 92
           + +++  +E D + +K  I
Sbjct: 554 NDLKQIVQEYDSLQSKTLI 572


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,294,434
Number of Sequences: 539616
Number of extensions: 2849404
Number of successful extensions: 9003
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 8997
Number of HSP's gapped (non-prelim): 23
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)