Query 029129
Match_columns 198
No_of_seqs 133 out of 729
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07762 CYTH-like_Pase_1 Uncha 100.0 1.7E-40 3.6E-45 265.2 22.2 179 1-193 1-180 (180)
2 COG4116 Uncharacterized protei 100.0 5.6E-39 1.2E-43 248.7 9.7 181 1-195 5-187 (193)
3 cd07756 CYTH-like_Pase_CHAD Un 100.0 3.4E-33 7.4E-38 225.9 17.2 180 2-193 1-195 (197)
4 COG3025 Uncharacterized conser 100.0 6.6E-32 1.4E-36 235.3 8.4 178 1-191 3-194 (432)
5 cd07758 ThTPase Thiamine Triph 99.9 5.2E-25 1.1E-29 178.0 19.5 174 1-190 1-193 (196)
6 PF01928 CYTH: CYTH domain; I 99.9 1.6E-25 3.5E-30 178.1 14.5 173 1-193 2-179 (185)
7 cd07374 CYTH-like_Pase CYTH-li 99.9 2.2E-25 4.8E-30 176.5 14.3 146 2-165 1-160 (174)
8 cd07890 CYTH-like_AC_IV-like A 99.9 5E-24 1.1E-28 168.3 20.2 157 2-183 1-160 (169)
9 TIGR00318 cyaB adenylyl cyclas 99.9 3.8E-22 8.3E-27 158.5 19.0 158 1-183 2-163 (174)
10 COG1437 CyaB Adenylate cyclase 99.8 5.3E-19 1.1E-23 139.1 17.7 156 1-181 2-162 (178)
11 cd07750 PolyPPase_VTC_like Pol 99.4 1.7E-11 3.7E-16 100.3 12.9 175 3-189 2-213 (214)
12 cd07761 CYTH-like_CthTTM-like 99.3 5.5E-11 1.2E-15 92.0 12.9 116 1-164 1-118 (146)
13 cd07891 CYTH-like_CthTTM-like_ 99.2 2.2E-10 4.8E-15 88.8 11.6 114 1-159 1-117 (148)
14 COG2954 Uncharacterized protei 99.1 1.3E-09 2.8E-14 82.6 9.6 113 1-158 3-118 (156)
15 PLN02318 phosphoribulokinase/u 98.7 3.2E-07 7E-12 84.8 14.2 122 29-187 276-403 (656)
16 cd07751 PolyPPase_VTC4_like Po 98.6 2.4E-06 5.2E-11 73.2 14.7 185 3-194 8-276 (290)
17 PF09359 VTC: VTC domain; Int 97.8 0.0002 4.3E-09 60.9 10.5 90 3-94 3-126 (283)
18 cd07892 PolyPPase_VTC2-3_like 97.6 0.0021 4.7E-08 55.3 14.0 86 5-94 10-128 (303)
19 PF02940 mRNA_triPase: mRNA ca 44.2 53 0.0011 26.5 5.0 30 129-160 179-215 (215)
20 cd07470 CYTH-like_mRNA_RTPase 37.6 1.3E+02 0.0029 25.0 6.5 42 11-54 63-115 (243)
21 COG5036 SPX domain-containing 34.0 58 0.0013 29.7 3.9 60 32-92 235-306 (509)
22 PF04667 Endosulfine: cAMP-reg 31.7 18 0.0004 25.3 0.4 18 33-50 34-51 (86)
23 COG2164 Uncharacterized conser 29.4 40 0.00086 24.6 1.8 30 11-40 23-52 (126)
24 PF04967 HTH_10: HTH DNA bindi 24.3 64 0.0014 20.4 1.9 8 33-40 14-21 (53)
No 1
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=100.00 E-value=1.7e-40 Score=265.18 Aligned_cols=179 Identities=25% Similarity=0.344 Sum_probs=160.1
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED 79 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~ 79 (198)
+|||+|+ +++++.+.++.+++.. ..+..|+|+|||||+++|++++++|||| .|++|+||+|+|+. .+ +.||
T Consensus 1 iEiE~K~-~l~~~~~~~l~~~~~~--~~~~~q~n~Yfdtp~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~-r~E~ 72 (180)
T cd07762 1 LEIEFKN-LLTKEEYEQLKNAFDL--KDFFKQTNYYFDTPDFALKKKHSALRIREKEGKAELTLKVPQE----VG-LLET 72 (180)
T ss_pred CcEEEEe-cCCHHHHHHHHHhccc--CCcEEEEEEEEeCCCHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CC-CcEE
Confidence 6999999 8999999999998653 4568899999999999999999999999 89999999999975 22 4599
Q ss_pred eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEe
Q 029129 80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECE 159 (198)
Q Consensus 80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E 159 (198)
|.+|+.++++.++.. ..+| ++.+..++..+|+ ....|.++++++|.|.+|.++++++|||++.|.++.+||||+|
T Consensus 73 e~~l~~~~~~~~~~~-~~~~---~~~~~~~L~~lg~-~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e 147 (180)
T cd07762 73 NQPLTLEEAEKLIKG-GTLP---EGEILDKLKELGI-DPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYE 147 (180)
T ss_pred eecCCHHHHHHHhcc-ccCC---chHHHHHHHHhCC-CcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEE
Confidence 999998899888887 4466 3566777788998 6568999999999999999999999999999998888999999
Q ss_pred eCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhh
Q 029129 160 SSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFR 193 (198)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~ 193 (198)
+.+++.|++.|..+++++||+++++ .||++||+
T Consensus 148 ~~~~~~~~~~~~~ll~~~gi~~~~~-~sKi~R~~ 180 (180)
T cd07762 148 VDDYEAGKKAFLELLKQYNIPYRPA-KNKIARFL 180 (180)
T ss_pred eCCHHHHHHHHHHHHHHcCCCcccC-cchhheeC
Confidence 9999889999999999999999997 69999986
No 2
>COG4116 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=5.6e-39 Score=248.69 Aligned_cols=181 Identities=27% Similarity=0.357 Sum_probs=164.0
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcc-eEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKT-LRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEE 78 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~-~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E 78 (198)
+|||+|- +++.+.|.+|...+... .+ ..|+|+||||||+.|+.+++||||| .+..+++|||.|... |+ . |
T Consensus 5 lEIE~Kt-lltk~ey~rL~~~~~~~--~~d~~QtN~YiDT~dF~LKek~~ALRIR~~e~~~elTLK~P~~v--Gl--l-E 76 (193)
T COG4116 5 LEIEFKT-LLTKEEYNRLISQFTIV--EPDVLQTNHYIDTDDFKLKEKKSALRIRTKENQYELTLKVPAKV--GL--L-E 76 (193)
T ss_pred hhhHHHH-HhhHHHHHHHHHHhccC--CCcceeeeeeecCcchhhhhhhcceeEEeecceEEEEecCchhc--Cc--h-h
Confidence 5999996 99999999999997642 33 8899999999999999999999999 889999999999886 66 6 9
Q ss_pred eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129 79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC 158 (198)
Q Consensus 79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~ 158 (198)
++.+|+.+++..++.. ..+|. +.+..++..+|+ +.+.|..+|+++|.|.+..++.|.+|||++.|.+..|||||+
T Consensus 77 ynq~Ls~e~a~~~l~~-~~~P~---g~v~d~l~~~gI-~~~~l~~~GsLtT~R~E~~~~~Gll~LD~s~Y~~~~DYElE~ 151 (193)
T COG4116 77 YNQILSLEEAKLALIS-ANLPE---GEVLDILEKLGI-KDSALQVFGSLTTIRAEKKYEIGLLVLDKSRYLGIEDYELEF 151 (193)
T ss_pred hcccccHHHHHHHhhc-cCCCc---cHHHHHHHHcCC-CHHHHHhhhhhhhhhhhhhccCceEEEchhhhCCccceeEEE
Confidence 9999999998888877 67885 555556677999 778899999999999999999999999999999999999999
Q ss_pred eeCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhhcC
Q 029129 159 ESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAG 195 (198)
Q Consensus 159 E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~ 195 (198)
|+.+.+.|+..|+.+|++++|+.++. .||++||+..
T Consensus 152 Ev~d~~qGk~~F~~~L~e~~I~~~~a-~nKv~RF~~~ 187 (193)
T COG4116 152 EVSDYEQGKQDFQKLLKEFSIEQHPA-KNKVQRFFKK 187 (193)
T ss_pred EeccHHHhHHHHHHHHHHcCcccccc-HHHHHHHHHH
Confidence 99999999999999999999999995 5999999864
No 3
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=100.00 E-value=3.4e-33 Score=225.85 Aligned_cols=180 Identities=23% Similarity=0.218 Sum_probs=138.0
Q ss_pred eeeeecCCCCHHHHHHHHHHhcc--c---cCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccc
Q 029129 2 EVELKLCLKSAASHKQLISLLSQ--F---HTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSR 75 (198)
Q Consensus 2 EiE~K~~l~~~~~~~~l~~~~~~--~---~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~ 75 (198)
|||+|| .++++.+.+|.++... . ......++|+||||||++|++++++|||| .|++|+||||+++...+|++.
T Consensus 1 EiElKl-~~~~~~~~~l~~~~~l~~~~~~~~~~~~l~~~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~~~ 79 (197)
T cd07756 1 EIELKL-LLPPEDLEALAAHPLLAALAAGRAQTRRLHNTYFDTPDLALRRAGIALRVRREGGQWVQTLKTAGSVVGGLHQ 79 (197)
T ss_pred CeeEee-cCCHHHHHHHHhchhhhccccCCcceeeeeeeeeeCcChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCccc
Confidence 899999 9999999999987322 1 12467899999999999999999999999 899999999999877678877
Q ss_pred eeeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECC----EEEEecceecCCC
Q 029129 76 VEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNS----LILEVDETKYDFG 151 (198)
Q Consensus 76 ~~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~----~~l~lD~~~~~~~ 151 (198)
+.|||++|+.+.++--+. ..+|. ..++..+ + ....|.|+....+.|..|.+.. .+||+|.+.+..+
T Consensus 80 R~E~e~~l~~~~~~l~~~--~~~~~--~~~~~~l----~--~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~ 149 (197)
T cd07756 80 RPEWEVPLPGPAPDLDLA--SILPD--GELLEAL----A--ALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAG 149 (197)
T ss_pred ceeEcccCCCCCcCcchh--hcCCc--ccCHhhh----h--ccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeC
Confidence 779999998766542110 12332 1222222 1 1135788877777999999943 5899999876543
Q ss_pred ----ceEEEEEeeCChhhHHHHHHHHHH-hcCCCCcccCCCHHHHhh
Q 029129 152 ----NNYEVECESSDPEGVKKLLEGFLN-ENGIEFEYSQMTKFAVFR 193 (198)
Q Consensus 152 ----~~~EiE~E~~~~~~~~~~~~~~l~-~~~i~~~~~~~sK~~R~~ 193 (198)
++||||+|+++|+. .++|..+.+ ....+++++..||++|-+
T Consensus 150 ~~~~~i~EiElELk~G~~-~~L~~la~~l~~~~~l~~~~~SKa~rG~ 195 (197)
T cd07756 150 DRSEPICEIELELKSGDP-AALFALARRLAERLPLRLSNRSKAERGY 195 (197)
T ss_pred CCccceEeEEEEecCCCH-HHHHHHHHHHHHhCCccCCCcCHHHhcc
Confidence 59999999999986 367777666 677789999999999954
No 4
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.6e-32 Score=235.30 Aligned_cols=178 Identities=21% Similarity=0.227 Sum_probs=133.8
Q ss_pred CeeeeecCCCCHHHHHHHHHHhcc---ccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccce
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQ---FHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRV 76 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~---~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~ 76 (198)
+|||+|| +++++....+.+.+.. ....+..+.|+||||||..|++++++|||| .|++|+||+|+.|...+|+|+|
T Consensus 3 ~EIELKf-~Vs~~aa~~l~~~L~~~~~~~~~~~~L~n~YyDTpd~~L~~~~~gLRIR~~~~~y~~TlKtaG~v~gGlH~R 81 (432)
T COG3025 3 QEIELKF-LVSPEAALALLSKLADYTISEHTPQQLANIYYDTPDNWLRRHDMGLRIRREGGQYEQTLKTAGGVVGGLHQR 81 (432)
T ss_pred cchhhhe-ecCHHHHHHHHHHhhhcccCCcchhhHhhhhcCCchHHHHhCCceEEEeccCCeEEEEEEecCccccccccC
Confidence 6999999 9999998888888654 234567789999999999999999999999 8899999999999999999999
Q ss_pred eeeeecCCHHHHHhhhcCC-CCcchhhhHHHHHHHHHhCCCCccceEEEee--eEEEEEEEEECC--EEEEecceecCCC
Q 029129 77 EEDEEELDPVVAKECIENP-SKLFEIESRVVRRVREEFGVGSEVGLVCLGG--FENLRQVYEWNS--LILEVDETKYDFG 151 (198)
Q Consensus 77 ~E~e~~l~~~~~~~~l~~~-~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~t~R~~~~~~~--~~l~lD~~~~~~~ 151 (198)
+|||++++++.++ ....| ..+|. .++ -......|+|+.+ |++.++.+.+++ .+|+||.+.+..|
T Consensus 82 pEyn~~L~~~~~~-~~~~p~~~~p~-------~~~---~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Ag 150 (432)
T COG3025 82 PEYNVPLPEDTLD-LAELPRDRWPA-------GIF---PLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAG 150 (432)
T ss_pred ccccccCCCCCcc-hhhChhhhccc-------ccC---CcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccC
Confidence 9999999988765 11111 12221 110 1101245777733 443444444444 3889999887655
Q ss_pred ----ceEEEEEeeCChhhHHHHHHHHHH-hcCCCCcccCCCHHHH
Q 029129 152 ----NNYEVECESSDPEGVKKLLEGFLN-ENGIEFEYSQMTKFAV 191 (198)
Q Consensus 152 ----~~~EiE~E~~~~~~~~~~~~~~l~-~~~i~~~~~~~sK~~R 191 (198)
++||||+|+++|++ .++|..+-. ..+.+.+.+..||++|
T Consensus 151 e~q~picElElELKsG~~-~aL~~la~~L~~~~~l~~s~lSKAeR 194 (432)
T COG3025 151 ERQEPICELELELKSGTP-QALLALARTLAENTGLRLSSLSKAER 194 (432)
T ss_pred cccCchhheehhhhcCCH-HHHHHHHHHHHHhCCccccchhhhhh
Confidence 59999999999985 456666555 6677888888999999
No 5
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.94 E-value=5.2e-25 Score=178.02 Aligned_cols=174 Identities=16% Similarity=0.171 Sum_probs=121.4
Q ss_pred CeeeeecCCCCHHHHHHHHHHhcc--ccCcceEeeeeeecCCChhHHhCCCEEEEecCCEEEEEEecCCcc--ccCccce
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQ--FHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSL--VNGVSRV 76 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~--~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~TlK~~~~~--~~g~~~~ 76 (198)
||||+|| .+.++...+|.. ++. .......++|+|||||+++|++++++||||.+ .|++|+|.+... .++..
T Consensus 1 ~EVE~Kf-~~~~~~~~~L~~-~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~-~~~lk~~~~~~~~~~~~~~-- 75 (196)
T cd07758 1 LEVERKF-RCGPSAEERLRK-LGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG-QWELKIPPGGDPPTAGANT-- 75 (196)
T ss_pred CcEEEEe-cCCHHHHHHHHh-ccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC-eEEEEecCCCCCCCCCCcc--
Confidence 7999999 666555555554 333 34567889999999999999999999999955 676555543321 12232
Q ss_pred eeeeecCCHHHHHhhhc---CCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEEC-CEEEEecceecCCCc
Q 029129 77 EEDEEELDPVVAKECIE---NPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWN-SLILEVDETKYDFGN 152 (198)
Q Consensus 77 ~E~e~~l~~~~~~~~l~---~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~-~~~l~lD~~~~~~~~ 152 (198)
+++......++...+. . ...|. +..+..++..+|+ .++++|+|.|.+|.++ +..||||++.|+ ..
T Consensus 76 -~~~E~~~~~~~~~~v~~~~~-~~~~~--~~~~~~~L~~lgf------~~~~~~~k~R~~y~~~~g~~v~LD~~~~G-~~ 144 (196)
T cd07758 76 -RYEELTGEAAIAAALRKLLG-GALPS--AGGLGDELANLGL------REFASFVTKRESWKLDGAFRVDLDRTDFG-YS 144 (196)
T ss_pred -eEEecccHHHHHHHHHHhcC-CCCCc--chhHHHHHhhCCC------eEEEEEEEEEEEEEcCCCcEEEEecccCC-cc
Confidence 4444333334333333 2 22332 2345566665555 7999999999999998 569999999976 56
Q ss_pred eEEEEEeeCC---h---hhHHHHHHHHHHhcCCCC-----cccCCCHHH
Q 029129 153 NYEVECESSD---P---EGVKKLLEGFLNENGIEF-----EYSQMTKFA 190 (198)
Q Consensus 153 ~~EiE~E~~~---~---~~~~~~~~~~l~~~~i~~-----~~~~~sK~~ 190 (198)
++|||+|+.+ . +.+.+.+..+++++|+.+ ...+.+|+.
T Consensus 145 ~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~~~~~~~~~~~gk~~ 193 (196)
T cd07758 145 VGEVELLVEEEDNEAEVPAALAKIDELISALMERYLWAFKQGRPPGKLT 193 (196)
T ss_pred eEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCccccccCCCCccceE
Confidence 8999999876 2 357888999999999998 444566653
No 6
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.93 E-value=1.6e-25 Score=178.14 Aligned_cols=173 Identities=27% Similarity=0.281 Sum_probs=126.2
Q ss_pred CeeeeecCCCCHHHHHHHHHH---hccccCcceEeeeeeecCCChhHHhCCCEEEEe--cCCEEEEEEecCCccccCccc
Q 029129 1 MEVELKLCLKSAASHKQLISL---LSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR--RDTRCVLCLKSKPSLVNGVSR 75 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~---~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR--~~~~~~~TlK~~~~~~~g~~~ 75 (198)
+|||+|+ ++++.++.+|... +........+|+|+|||||+++|.+++.+|||| .|+++.+|+|.++... .
T Consensus 2 ~EiE~K~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~--~-- 76 (185)
T PF01928_consen 2 IEIEIKF-LVPESDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDG--P-- 76 (185)
T ss_dssp EEEEEEE-EESHHHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSS--S--
T ss_pred EEEEEEE-EcCHHHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccC--c--
Confidence 4999999 7778888887432 333345678899999999999999999999999 4888999999998752 2
Q ss_pred eeeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEE
Q 029129 76 VEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYE 155 (198)
Q Consensus 76 ~~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~E 155 (198)
+.|.+..++.++.+..+.+ .+.+..++..++ +.+++.+.+.|+.|.+++++|++|.+.+..+.++|
T Consensus 77 ~~e~~~~~~r~e~e~~i~~--------~~~~~~~l~~l~------l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~E 142 (185)
T PF01928_consen 77 REEIEFEVSREEYEAPISD--------AEEMREILEALG------LRPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLE 142 (185)
T ss_dssp EEEEEEEESHHCCEEEHSH--------HHHHHHHHHHTT------CEEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred ccccceeecchhhhccccc--------hHHHHHHHHHhc------CceeEEEEEEEEEEEECCEEEEEEEEecceEEEEE
Confidence 3355555554443322221 234445555444 47888999999999999999999999988778899
Q ss_pred EEEeeCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhh
Q 029129 156 VECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFR 193 (198)
Q Consensus 156 iE~E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~ 193 (198)
||++..+++.+...+..++...+ .+..+..||+.|++
T Consensus 143 iE~~~~~~~~~~~~~~~i~~~~~-~l~~~~~s~~~r~y 179 (185)
T PF01928_consen 143 IEIESEDEEDLKEAAEEILALLN-ELGISENSKIERSY 179 (185)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHH-HTTEEGGGBHHSHH
T ss_pred EEEcCCCHhHHHHHHHHHHHHhh-hcCCCccchHHHHH
Confidence 99988877766666666554222 22345578888865
No 7
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=99.93 E-value=2.2e-25 Score=176.46 Aligned_cols=146 Identities=24% Similarity=0.188 Sum_probs=111.1
Q ss_pred eeeeecCCCCHHHHHHHHHH----hccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccce
Q 029129 2 EVELKLCLKSAASHKQLISL----LSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRV 76 (198)
Q Consensus 2 EiE~K~~l~~~~~~~~l~~~----~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~ 76 (198)
|||+|| .++++.+.++..+ ++.......++.|+||||||++|.++++.||+| .|++|.||+|+++.. +.+
T Consensus 1 EiElK~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~YfDT~d~~l~~~~lrlR~r~~~~~~~~TlK~~~~~----~~r 75 (174)
T cd07374 1 EVERKF-RVPDDAVLPLLLGVPGVLGVGEPETVQLRAIYFDTPDLRLARAGLRLRRRTGGADAGWHLKLPGGI----SRR 75 (174)
T ss_pred CeeEEE-cCChHHhhHHHhhchhhcccccccceeeeeeEecCccchhhhCCcEEEEEcCCCccEEEEEccCCC----CCc
Confidence 899999 8899999888864 222234567899999999999999999999988 778999999999763 446
Q ss_pred eeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECC-----EEEEecceecC--
Q 029129 77 EEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNS-----LILEVDETKYD-- 149 (198)
Q Consensus 77 ~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~-----~~l~lD~~~~~-- 149 (198)
.|||++|+...++..+.. . ...+ . ..+ ....|.|+.++.+.|..|.++. .+||||.+.+.
T Consensus 76 ~E~e~~l~~~~~~~~~~~---------~-~~~~-~-~~~-~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~ 142 (174)
T cd07374 76 TEVRAPLGDAAAVAPLLL---------A-AALV-L-AVT-RGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVL 142 (174)
T ss_pred eEEEeecCCccCCccccc---------c-hhhe-e-eec-CCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEc
Confidence 699999987665432211 1 0011 1 122 3356899999999999999963 68999999985
Q ss_pred --CCceEEEEEeeCChhh
Q 029129 150 --FGNNYEVECESSDPEG 165 (198)
Q Consensus 150 --~~~~~EiE~E~~~~~~ 165 (198)
+.++||||+|+++|+.
T Consensus 143 ~~~~~~~e~E~El~~~~~ 160 (174)
T cd07374 143 DGGGTQYWREVEVELPDG 160 (174)
T ss_pred CCCcceEEEEEEEEEcCC
Confidence 3479999999988754
No 8
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.93 E-value=5e-24 Score=168.25 Aligned_cols=157 Identities=21% Similarity=0.221 Sum_probs=126.8
Q ss_pred eeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cC--CEEEEEEecCCccccCccceee
Q 029129 2 EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RD--TRCVLCLKSKPSLVNGVSRVEE 78 (198)
Q Consensus 2 EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~--~~~~~TlK~~~~~~~g~~~~~E 78 (198)
|+|+|+++.+++.+.+.+..++........|+|+|||||+++|.+++.+|||| .+ +++++|+|++.... +...+.|
T Consensus 1 EvEiK~~v~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~-~~~~~~E 79 (169)
T cd07890 1 EVEIKARVDDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDG-GPKVREE 79 (169)
T ss_pred CEEEEEEeCCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCC-CccceEE
Confidence 89999966668888777777544344678999999999999999999999999 66 78999999987642 3545569
Q ss_pred eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129 79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC 158 (198)
Q Consensus 79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~ 158 (198)
|+.++++ ...+..++..+|+ .+++.++|.|.+|.++++.|+||.+... |.+.|||+
T Consensus 80 ~e~~v~~-----------------~~~~~~iL~~lg~------~~~~~~~K~R~~~~~~~~~v~lD~~~~l-G~f~EiE~ 135 (169)
T cd07890 80 IETEVAD-----------------PEAMKEILERLGF------GPVGRVKKEREIYLLGQTRVHLDRVEGL-GDFVEIEV 135 (169)
T ss_pred EEEecCC-----------------HHHHHHHHHHcCC------ceeEEEEEEEEEEEECCEEEEEEccCCC-CceEEEEE
Confidence 9998852 1234445565666 5778899999999999999999999854 57999999
Q ss_pred eeCChhhHHHHHHHHHHhcCCCCcc
Q 029129 159 ESSDPEGVKKLLEGFLNENGIEFEY 183 (198)
Q Consensus 159 E~~~~~~~~~~~~~~l~~~~i~~~~ 183 (198)
...+.+.+.+.+..+.+.+|+....
T Consensus 136 ~~~~~~~~~~~l~~~~~~lg~~~~~ 160 (169)
T cd07890 136 VLEDIEEAEEGLGEAAELLGLLEYD 160 (169)
T ss_pred EeCCcHHHHHHHHHHHHHcCCCccC
Confidence 9988888889999999999997643
No 9
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.90 E-value=3.8e-22 Score=158.48 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=120.2
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED 79 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~ 79 (198)
+|+|+|+++.+.+.....+..++........|+|+|||+|+++|...+.+|||| .++.+.+|+|+|+... +...+.|+
T Consensus 2 ~EvE~K~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~-~~~~~~E~ 80 (174)
T TIGR00318 2 IEVEVKAKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDN-ESKTRKEI 80 (174)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCC-cceEEEEE
Confidence 499999966677765444444443345678899999999999999999999999 7788999999987542 33445589
Q ss_pred eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEe
Q 029129 80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECE 159 (198)
Q Consensus 80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E 159 (198)
+..|++. ..+..++..+|+ .+++.+++.|..|.+++..++||...-. |.+.|||+.
T Consensus 81 e~~v~d~-----------------~~~~~iL~~LG~------~~~~~v~K~R~~~~l~~~~i~lD~v~~l-G~FvEIE~~ 136 (174)
T TIGR00318 81 EFKIEDI-----------------ENALQILKKLGF------KKVYEVIKKRRIYQTNELNVSIDDVEGL-GFFLEIEKI 136 (174)
T ss_pred EEEECCH-----------------HHHHHHHHHCCC------eEEEEEEEEEEEEEECCEEEEEEccCCC-ccEEEEEEe
Confidence 8888321 233345555676 5788899999999998889999988744 588999997
Q ss_pred eCC---hhhHHHHHHHHHHhcCCCCcc
Q 029129 160 SSD---PEGVKKLLEGFLNENGIEFEY 183 (198)
Q Consensus 160 ~~~---~~~~~~~~~~~l~~~~i~~~~ 183 (198)
..+ .+++.+.+..+++++||+...
T Consensus 137 ~~~~~~~~~~~~~i~~~~~~LGl~~~~ 163 (174)
T TIGR00318 137 INNINDKDLALEEIFEIINQLGIKDNI 163 (174)
T ss_pred cCCccchHHHHHHHHHHHHHcCCCcCc
Confidence 754 345678889999999994444
No 10
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.83 E-value=5.3e-19 Score=139.06 Aligned_cols=156 Identities=20% Similarity=0.278 Sum_probs=122.7
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe--cCCEEEEEEecCCccccCccceee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR--RDTRCVLCLKSKPSLVNGVSRVEE 78 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR--~~~~~~~TlK~~~~~~~g~~~~~E 78 (198)
+|+|+|++..+.+.....+...+........|.|+|||.|.++|..++.+|||| .|+...+|+|+|..+... ..+.|
T Consensus 2 ~EVEvK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~-k~r~E 80 (178)
T COG1437 2 YEVEVKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRES-KTREE 80 (178)
T ss_pred eeEEEEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccc-cceee
Confidence 599999954456676666666555556778999999999999999999999999 778899999999875322 23558
Q ss_pred eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129 79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC 158 (198)
Q Consensus 79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~ 158 (198)
++..+++. +....++..+|+ .+++...+.|..|.+++..++||.+... |.+.|||+
T Consensus 81 ~E~~v~D~-----------------~~~~~il~~LGF------~~~~~VkK~R~iY~~~~~~i~lD~VegL-G~F~EIE~ 136 (178)
T COG1437 81 IEIEVSDV-----------------EKALEILKRLGF------KEVAVVKKTREIYKVGNVTIELDAVEGL-GDFLEIEV 136 (178)
T ss_pred EEEEeCCH-----------------HHHHHHHHHcCC------ceeeEEEEEEEEEeeCCEEEEEecccCC-cccEEEEE
Confidence 88877521 223345566787 4677788999999999999999999864 58999999
Q ss_pred eeCChhh---HHHHHHHHHHhcCCCC
Q 029129 159 ESSDPEG---VKKLLEGFLNENGIEF 181 (198)
Q Consensus 159 E~~~~~~---~~~~~~~~l~~~~i~~ 181 (198)
++.+.++ +...+..+++++|+..
T Consensus 137 ~~~d~~e~~~~~~~~~~i~~~lGl~~ 162 (178)
T COG1437 137 MVDDENEIDGAKEEIEEIARQLGLKE 162 (178)
T ss_pred ecCCchhhHHHHHHHHHHHHHhCCCh
Confidence 9987653 4577889999999963
No 11
>cd07750 PolyPPase_VTC_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.35 E-value=1.7e-11 Score=100.26 Aligned_cols=175 Identities=19% Similarity=0.153 Sum_probs=110.1
Q ss_pred eeeecCCCCHHHHHHHHHHhcc-----ccC--cceEeeeeeecCCChhH-HhCCC------EEEEe---c-CCEEEEEEe
Q 029129 3 VELKLCLKSAASHKQLISLLSQ-----FHT--KTLRQHNLFFDTSTSFL-SSQRT------VLRLR---R-DTRCVLCLK 64 (198)
Q Consensus 3 iE~K~~l~~~~~~~~l~~~~~~-----~~~--~~~~~~n~YfDTpd~~L-~~~~~------~LRiR---~-~~~~~~TlK 64 (198)
+|+|| +++++++..|...+.. ... ......|+|||||+++| ..+.. .||+| . ++...+.+|
T Consensus 2 ~E~Ky-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~i~s~YfDt~~~~ly~~~~~g~~~r~K~R~R~Y~~~~~~~flE~K 80 (214)
T cd07750 2 YERKY-LVPASQLEALLAALKPHLRVDEYAGNRDYTIRSLYFDTPDLDLYREKLNGRRRREKVRIRSYGDSDGLIFLEVK 80 (214)
T ss_pred ceEEE-EeCHHHHHHHHHHHHhHCCCCCCCCCCCceEEEEEecCCcHHHHHHHhcCcCccceEEEEEcCCCCCcEEEEEE
Confidence 69999 9999999888887542 111 25678999999999999 44444 49999 3 567899999
Q ss_pred cCCccccCccceeeeeecCCHHHHHhhhcCCCCcchhhh-H-HHHHHHHHhCCCCccceEEEeeeEEEEEEEEEC--CEE
Q 029129 65 SKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIES-R-VVRRVREEFGVGSEVGLVCLGGFENLRQVYEWN--SLI 140 (198)
Q Consensus 65 ~~~~~~~g~~~~~E~e~~l~~~~~~~~l~~~~~~p~~~~-~-~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~--~~~ 140 (198)
.+.. +. ......+++..++..++.. ...+.... . ....... .. ....|.|+....=.|..|... +..
T Consensus 81 ~k~~---~~--~~K~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~L~P~~~~~Y~R~a~~~~~~~~R 151 (214)
T cd07750 81 TKRG---RV--TYKRRLPLSPEDAERLLAG-GYFFLLESQDPLAEEFYF-RM--RYKQLRPVLLVSYRREALVSPDGGVR 151 (214)
T ss_pred EEEC---CE--EEEEEecCCHHHHHHHHcC-CCccccccchhHHHHHHH-HH--hcCCCCceEEEEEeeEEeecCCCCEE
Confidence 8866 32 2255688888887777765 21111000 0 0111111 11 123466663322267777663 358
Q ss_pred EEecceecC---------------CCceEEEEEeeCChhhHHHHHHHHHHhcCCCCcccCCCHH
Q 029129 141 LEVDETKYD---------------FGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKF 189 (198)
Q Consensus 141 l~lD~~~~~---------------~~~~~EiE~E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~ 189 (198)
|++|.+... ...++++++|+|.+...-.++..++...++. +..-||+
T Consensus 152 iT~D~~l~~~~~~~~~~~~~~~~~~~~~~~viLElK~~~~~p~~~~~ll~~~~l~--~~~~SKY 213 (214)
T cd07750 152 ITFDTNLRYRDEDGDLFSGNLGTPILPPDLVILEVKYDGALPLWLADLLSSHGLE--PTSFSKY 213 (214)
T ss_pred EEEeCCceeEeccccccCcccCCccCCCCcEEEEEeeCCCChHHHHHHHHhcCCE--eCCcccc
Confidence 899975311 1247999999998765345777777666554 4456885
No 12
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=99.31 E-value=5.5e-11 Score=91.96 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=78.2
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED 79 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~ 79 (198)
||||.|| ++ +.+...+ .......+. ..|+-+ +.++||| .|+++.+|+|++. |++|. |+
T Consensus 1 ~EiERKf-Lv--~~~~~~~---~~~~~~~i~--q~Yl~~--------~~~vRvR~~~~~~~lT~K~~~----~~~R~-E~ 59 (146)
T cd07761 1 MEIERKF-LV--NELPAGL---ESYKKVEIR--QGYLSI--------NPEVRIRSKGEKYILTVKSGG----GLVRE-EI 59 (146)
T ss_pred CcEEEEE-Eh--hhhhhhc---ccCCCcEEE--EEeccC--------CcEEEEEEECCEEEEEEEcCC----CcceE-EE
Confidence 8999999 88 2332222 111223344 489865 4799999 8999999999875 45555 99
Q ss_pred eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEE-CCEEEEecceecCCCceEEEEE
Q 029129 80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEW-NSLILEVDETKYDFGNNYEVEC 158 (198)
Q Consensus 80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~-~~~~l~lD~~~~~~~~~~EiE~ 158 (198)
|.+|+..++++++.. .. ...+++.|..|.+ ++..+++|.....+...+-+|+
T Consensus 60 E~~I~~~~~~~ll~~------------------~~---------~~~I~K~R~~~~~~~~~~~~vD~~~g~~~gL~~~Ev 112 (146)
T cd07761 60 EIEIDKKEFEHLLEK------------------TE---------GNLIEKTRYLIPLEGGLLAELDVFEGRLTGLVYAEV 112 (146)
T ss_pred EEeCCHHHHHHHHHh------------------CC---------CCeEEEEEEEEEeCCCcEEEEEEEcCCCCCeEEEEE
Confidence 999987665433311 01 1126789999999 7889999986644445667777
Q ss_pred eeCChh
Q 029129 159 ESSDPE 164 (198)
Q Consensus 159 E~~~~~ 164 (198)
|+.+.+
T Consensus 113 E~~se~ 118 (146)
T cd07761 113 EFPSEE 118 (146)
T ss_pred EcCCch
Confidence 776644
No 13
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=99.21 E-value=2.2e-10 Score=88.77 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=79.4
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED 79 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~ 79 (198)
||||.|| ++....+... . .....+.| .|+.+ ..+.+|||| .|+++.+|+|++.. |..+. |+
T Consensus 1 ~EiERKf-Lv~~~~~~~~--~---~~~~~I~Q--~Yl~~------~~~~~lRiR~~~~~~~lT~K~~~~---~~~R~-E~ 62 (148)
T cd07891 1 LEIERKF-LVKGDAWRAL--A---AKGVRIRQ--GYLST------DPERTVRVRIAGDRAYLTIKGPTN---GLSRY-EF 62 (148)
T ss_pred CeEEEEE-EECCcccccc--c---CCCcEEEE--EeeeC------CCCcEEEEEEeCCEEEEEEEeCCC---CceEE-EE
Confidence 8999999 9886666542 1 11233444 89974 456799999 89999999999866 44444 99
Q ss_pred eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCc--eEEEE
Q 029129 80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGN--NYEVE 157 (198)
Q Consensus 80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~--~~EiE 157 (198)
|.+|+.++++.++.. .. ...+.+.|..+.+++..++||.....+.. +.|||
T Consensus 63 E~~i~~~~~~~l~~~-------------------~~--------~~~I~K~R~~~~~~~~~~~lD~~~g~~~gL~~~EiE 115 (148)
T cd07891 63 EYEIPLADAEELLAL-------------------CE--------GPVIEKTRYRVPHGGHTWEVDVFHGENAGLVVAEIE 115 (148)
T ss_pred EEeCCHHHHHHHHhc-------------------CC--------CCeEEEEEEEEEeCCEEEEEEEEcCCCCceEEEEEE
Confidence 999987776544321 00 12257899999999999999997644433 55555
Q ss_pred Ee
Q 029129 158 CE 159 (198)
Q Consensus 158 ~E 159 (198)
+.
T Consensus 116 ~~ 117 (148)
T cd07891 116 LP 117 (148)
T ss_pred cC
Confidence 53
No 14
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.07 E-value=1.3e-09 Score=82.62 Aligned_cols=113 Identities=29% Similarity=0.275 Sum_probs=81.0
Q ss_pred CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129 1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED 79 (198)
Q Consensus 1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~ 79 (198)
+|||.|| ++..+.++++.+.. -...| .|..|+ .+.++||| .|++..+|+|++.+ +++|. |+
T Consensus 3 ~EIERKF-LV~~d~WR~~a~~~-----i~~~q--~y~at~------~~~tVRVRi~g~~A~LTiK~~~~---~~~R~-Ef 64 (156)
T COG2954 3 IEIERKF-LVAGDGWRQLADGS-----IYRRQ--GYLATE------QGRTVRVRIVGDRAYLTIKGGAS---GLSRS-EF 64 (156)
T ss_pred ceeeeee-eecCccHHHhhccc-----eeecc--eeeecC------CCcEEEEEEecceEEEEEEcccc---ceeee-ee
Confidence 5999999 99999999888652 12223 676655 45689999 99999999999877 56666 99
Q ss_pred eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecce--ecCCCceEEEE
Q 029129 80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDET--KYDFGNNYEVE 157 (198)
Q Consensus 80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~--~~~~~~~~EiE 157 (198)
|.+++..++.+||.. +. |. + .++.|.-+.+.|....+|.- ...+-...|||
T Consensus 65 EY~iPl~DA~e~l~~--------------~~---g~--------~--IEK~R~~v~~~G~~wEVDvF~G~n~gLvvAEvE 117 (156)
T COG2954 65 EYEIPLADAEEMLTT--------------AC---GR--------V--IEKTRYPVRHGGFLWEVDVFLGDNAGLVVAEVE 117 (156)
T ss_pred eecccccCHHHHHHH--------------hc---ch--------h--eeeeEeeeeeCCEEEEEeeecCcccceEEEEEE
Confidence 999887776665543 11 11 1 56788888888877788863 22233467777
Q ss_pred E
Q 029129 158 C 158 (198)
Q Consensus 158 ~ 158 (198)
+
T Consensus 118 l 118 (156)
T COG2954 118 L 118 (156)
T ss_pred c
Confidence 6
No 15
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.72 E-value=3.2e-07 Score=84.84 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=89.3
Q ss_pred ceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCcc----c-eeeeeecCCHHHHHhhhcCCCCcchhh
Q 029129 29 TLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVS----R-VEEDEEELDPVVAKECIENPSKLFEIE 102 (198)
Q Consensus 29 ~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~----~-~~E~e~~l~~~~~~~~l~~~~~~p~~~ 102 (198)
.....++||.-|..++...+.||||| .++++.+|+|.+-.. |-. + +.|+++.+
T Consensus 276 ~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~d--gp~ii~pk~~fEv~v~~------------------- 334 (656)
T PLN02318 276 TEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTD--EPFIISPRITFEVSVRL------------------- 334 (656)
T ss_pred cceeeEEEecCCCCCchhccceEEEEecCCEEEEEEeccccc--CCeecCcceeEEEeeeh-------------------
Confidence 34458999999999999999999999 999999999944221 321 1 11332221
Q ss_pred hHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEeeCChhhHHHHHHHHHHhcCCCCc
Q 029129 103 SRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFE 182 (198)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E~~~~~~~~~~~~~~l~~~~i~~~ 182 (198)
.. .+..+|+ +.++.+++.|.+|..++..|++|...-.+.++.||| |. ++..+..+..++|+...
T Consensus 335 ---~~-gL~aLGy------~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIe-----g~-~r~~V~~~a~kLGl~g~ 398 (656)
T PLN02318 335 ---LG-GLMALGY------TIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQ-----GK-DRLVVKDVAEQLGLEGS 398 (656)
T ss_pred ---Hh-HHHHcCC------ceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEe-----hh-HHHHHHHHHHHcCCCCC
Confidence 11 3344677 456778999999999999999999987766688888 44 36777788889999776
Q ss_pred ccCCC
Q 029129 183 YSQMT 187 (198)
Q Consensus 183 ~~~~s 187 (198)
..+.|
T Consensus 399 ~i~~S 403 (656)
T PLN02318 399 YIPRT 403 (656)
T ss_pred ccccc
Confidence 65544
No 16
>cd07751 PolyPPase_VTC4_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) protein VTC4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2,-3, and -4 contain polyP polymerase domains. S. cerevisiae VTC4 belongs to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=98.58 E-value=2.4e-06 Score=73.16 Aligned_cols=185 Identities=13% Similarity=0.050 Sum_probs=107.8
Q ss_pred eeeecCCCCHHHHHHHHHHhccc------c--------------CcceEeeeeeecCCChhHHhCCC-------EEEEe-
Q 029129 3 VELKLCLKSAASHKQLISLLSQF------H--------------TKTLRQHNLFFDTSTSFLSSQRT-------VLRLR- 54 (198)
Q Consensus 3 iE~K~~l~~~~~~~~l~~~~~~~------~--------------~~~~~~~n~YfDTpd~~L~~~~~-------~LRiR- 54 (198)
.|.|+ .++++++..|...+... . .+....+|+|||||+++|-...+ .||||
T Consensus 8 ~e~Ky-~v~~~~~~~lk~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYFDtp~~~ly~~kl~k~~~r~klRlR~ 86 (290)
T cd07751 8 RTTKY-WVHPRDVVPVKLAILKHLPVLVFNGSKEEEKEKEDVPPRDDSAITSVYFDNENLDLYHGRLERDEGAELIRLRW 86 (290)
T ss_pred eeEEE-EEcHHHHHHHHHHHHhhCCceecCCccccccccccccCCCCceEEEEEecCCcHHHHHHHhcCCCCCceEEEEe
Confidence 68999 99999998777763210 0 11345799999999999986654 99999
Q ss_pred c-----CCEEEEEEecCCccc-cCccceeeeeecCCHHHHHhhhcCCCCcc-----------------hhhhHHHHHHHH
Q 029129 55 R-----DTRCVLCLKSKPSLV-NGVSRVEEDEEELDPVVAKECIENPSKLF-----------------EIESRVVRRVRE 111 (198)
Q Consensus 55 ~-----~~~~~~TlK~~~~~~-~g~~~~~E~e~~l~~~~~~~~l~~~~~~p-----------------~~~~~~~~~l~~ 111 (198)
- ++...+.+|....+. +|. ..+...+++..++..+|.....+. .-+..++..+..
T Consensus 87 Yg~~~~~~~vflE~K~k~~~~~~~~--~~K~R~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~ 164 (290)
T cd07751 87 YGGMQDTDTVFVERKTHHESWTGEK--SVKERFALKEKYVNSFLKGKYTVDKVFRKLRKEGKKSEAEIEKLEALATEIQY 164 (290)
T ss_pred cCCCCCCCceEEEEEEeccCCccce--eEEEEeecCHHHHHHHHcCCcchHHHHHhhhhccccccccchhHHHHHHHHHH
Confidence 2 377889999886532 233 235668899888888876411110 000122333322
Q ss_pred HhCCCCccceEEEeeeEEEEEEEEEC---CEEEEeccee-cCC-------------------C--------ceEEEEEee
Q 029129 112 EFGVGSEVGLVCLGGFENLRQVYEWN---SLILEVDETK-YDF-------------------G--------NNYEVECES 160 (198)
Q Consensus 112 ~~~~~~~~~l~~~~~~~t~R~~~~~~---~~~l~lD~~~-~~~-------------------~--------~~~EiE~E~ 160 (198)
.. ....|.|+.-..=.|..|... +..|.+|... +.. . +..=+|+-+
T Consensus 165 ~~---~~~~L~P~~~t~Y~R~Af~~~~d~~vRIT~Dt~L~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~f~~~ILEVK~ 241 (290)
T cd07751 165 VI---LKRKLKPVVRTFYRRTAFQLPDDNRVRISLDTELCMIDERGRDGRRRTTLNDWPFKQLPDNEIVRFPYAVLEVKL 241 (290)
T ss_pred HH---HhCCCcceEEEEEeEeeeecCCCCCEEEEEecCceeEecCccccccccccccCccccCCcccccCCCeEEEEEEe
Confidence 11 112455552222257777663 2478888642 110 0 112233333
Q ss_pred CC--hhhHHHHHHHHHHhcCCCCcccCCCHHHHhhc
Q 029129 161 SD--PEGVKKLLEGFLNENGIEFEYSQMTKFAVFRA 194 (198)
Q Consensus 161 ~~--~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~ 194 (198)
.. +...-.++..++...++..-++ -||+...+.
T Consensus 242 ~~~~~~~~P~Wi~~ll~~~~v~~v~~-FSKY~~G~A 276 (290)
T cd07751 242 QTQEGEEPPEWVEELLNSHLVEEVYK-FSKFLHGCA 276 (290)
T ss_pred cCCCCCCCCHHHHHHHhhCCceECCC-cCHHHHHHH
Confidence 31 1222368999999888865443 499888554
No 17
>PF09359 VTC: VTC domain; InterPro: IPR018966 This presumed domain is found in the yeast vacuolar transport chaperone proteins VTC2, VTC3 and VTC4. This domain is also found in a variety of bacterial proteins. ; PDB: 3G3O_A 3G3R_B 3G3U_A 3G3Q_A 3G3T_A.
Probab=97.83 E-value=0.0002 Score=60.95 Aligned_cols=90 Identities=21% Similarity=0.180 Sum_probs=58.2
Q ss_pred eeeecCCCCHHHHHHHHHHhccc-------cC-------------cceEeeeeeecCCChhHHhC-------CCEEEEe-
Q 029129 3 VELKLCLKSAASHKQLISLLSQF-------HT-------------KTLRQHNLFFDTSTSFLSSQ-------RTVLRLR- 54 (198)
Q Consensus 3 iE~K~~l~~~~~~~~l~~~~~~~-------~~-------------~~~~~~n~YfDTpd~~L~~~-------~~~LRiR- 54 (198)
.|.|| +++++++..|...+... .. ......++|||||++++-.. ...+|||
T Consensus 3 ~e~KY-~v~~~~~~~lk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYfDt~~~~~y~~~l~~~~~r~klRiR~ 81 (283)
T PF09359_consen 3 RETKY-WVHPDNLMELKQRLLKHLPVDEYGGSSEDKKDAAISDEKGDYTIRSLYFDTPDFDLYHDKLEGRENREKLRIRW 81 (283)
T ss_dssp EEEEE-EE-HHHHHHHHHHHHTTS-BEEESTTS-----------GGGGEEEEEEEE-TT-HHHHHHHHT-TT-EEEEEEE
T ss_pred EEEEE-EEcHHHHHHHHHHHHHhCCccccCCCccccccccccccCCCccEEEEEecCCChHHHHHHhcCCCCCceEEEEE
Confidence 68999 99999998888774321 11 13467999999999888765 3489999
Q ss_pred c------CCEEEEEEecCCccccCccceeeeeecCCHHHHHhhhcC
Q 029129 55 R------DTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIEN 94 (198)
Q Consensus 55 ~------~~~~~~TlK~~~~~~~g~~~~~E~e~~l~~~~~~~~l~~ 94 (198)
- ++...+.+|.+.....+.... ....+++..++..++..
T Consensus 82 Yg~~~~~~~~vflE~K~k~~~~~~~~s~-K~R~~l~~~~~~~~l~g 126 (283)
T PF09359_consen 82 YGDNDPESSPVFLEIKTKHEGWTYEESV-KRRFPLKEKEAEDFLNG 126 (283)
T ss_dssp ESSCCG---EEEEEEEEEEEGGGTEEEE-EEEEEEEGGGHHHHHTT
T ss_pred eCCCCcCcceEEEEEEEecCCccccccc-eeEEEcCHHHHhhHhcC
Confidence 2 358889999886542221111 44577777777777743
No 18
>cd07892 PolyPPase_VTC2-3_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, and -3 , and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. S. cerevisiae VTC-2,and -3 belong to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-strande
Probab=97.64 E-value=0.0021 Score=55.32 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=59.6
Q ss_pred eecCCCCHHHHHHHHH----Hhcc--cc--------------CcceEeeeeeecCCChhHHhCCC-------EEEEe-c-
Q 029129 5 LKLCLKSAASHKQLIS----LLSQ--FH--------------TKTLRQHNLFFDTSTSFLSSQRT-------VLRLR-R- 55 (198)
Q Consensus 5 ~K~~l~~~~~~~~l~~----~~~~--~~--------------~~~~~~~n~YfDTpd~~L~~~~~-------~LRiR-~- 55 (198)
.|| .+.++++..+.. |+.. .. ......+|.|||||+++|-..++ .|||| .
T Consensus 10 ~Ky-wvh~dn~~evK~~IlrhLPvlvy~~~~~~~~~~~~~~~~~~~~ItSLYFDn~~~~ly~~kl~k~~~reklRlRwYg 88 (303)
T cd07892 10 YKF-WVHPDNLMEVKTRILRHLPVLVYNNQSSEDDDDVLGAGSEDPTITTLYFDNPNFDLYNDKLLKLNEAPTLRLRWTG 88 (303)
T ss_pred EEE-EEcHHHHHHHHHHHHhhCCceeecCCcccccccccccCCCCCcEEEEEeCCCCHHHHHHHhcCcCCCceEEEEEcC
Confidence 588 888888755444 3321 10 12245799999999999987665 89999 4
Q ss_pred ----CCEEEEEEecCCccccCccceeeeeecCCHHHHHhhhcC
Q 029129 56 ----DTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIEN 94 (198)
Q Consensus 56 ----~~~~~~TlK~~~~~~~g~~~~~E~e~~l~~~~~~~~l~~ 94 (198)
+....+..|....+. |. ..+...+++...+..+|..
T Consensus 89 ~~~~~~~IflE~K~k~~~~-~~--~~K~R~~l~~k~v~~~l~g 128 (303)
T cd07892 89 KLSDKPDIFVEKKTFDENT-SS--FEEDKLQLKEKYINGFIFG 128 (303)
T ss_pred CCCCCCCEEEEEEEEeCCC-Ce--eEEEEeccCHHHHHHHHcC
Confidence 366788899876531 22 2366788888888888865
No 19
>PF02940 mRNA_triPase: mRNA capping enzyme, beta chain; InterPro: IPR004206 The mRNA capping enzyme in yeast is composed of two subunits, alpha and beta. The alpha subunit has guanylyltransferase activity, whilst the beta subunit is an RNA 5'-triphosphatase []. This entry represents a structural domain found in the mRNA capping enzyme beta subunit. The domain is related to the CYTH domain.; GO: 0004651 polynucleotide 5'-phosphatase activity, 0016740 transferase activity; PDB: 3KYH_B 1D8H_C 1D8I_A 3BGY_B 2QZE_B 2QY2_A.
Probab=44.16 E-value=53 Score=26.53 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEEEECCEEEEecceec-------CCCceEEEEEee
Q 029129 129 NLRQVYEWNSLILEVDETKY-------DFGNNYEVECES 160 (198)
Q Consensus 129 t~R~~~~~~~~~l~lD~~~~-------~~~~~~EiE~E~ 160 (198)
+.|..|.... ..+|-+.+ .....||||+|+
T Consensus 179 K~R~Sy~~~~--~~iDLT~V~~~~~~~~~~~~~EvEvEl 215 (215)
T PF02940_consen 179 KDRTSYTHQP--FQIDLTQVNSIKKDQRQEKTYEVEVEL 215 (215)
T ss_dssp EEEEEEEECC--EEEEEEEEESSTTGGGSEEEEEEEEEE
T ss_pred cceEEEEeCC--EEEEEEEEEecCCCCCCCEeeEEEEeC
Confidence 4677777766 55665544 112489999996
No 20
>cd07470 CYTH-like_mRNA_RTPase CYTH-like mRNA triphosphatase (RTPase) component of the mRNA capping apparatus. This subgroup includes fungal and protozoal RTPases. RTPase catalyzes the first step in the mRNA cap formation process, the removal of the gamma-phosphate of triphosphate terminated pre-mRNA. This activity is metal-dependent. The 5'-end of the resulting mRNA diphosphate is subsequently capped with GMP by RNA guanylytransferase, and then further modified by one or more methyltransferases. The mRNA cap-forming activity is an essential step in mRNA processing. The RTPases are not conserved among eukarya. The structure and mechanism of this fungal RTPase domain group is different from that of higher eukaryotes. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel. The RTPase domain of the mimivirus RTPase-GTase fusion mRNA capping enzyme also belongs to this
Probab=37.59 E-value=1.3e+02 Score=24.95 Aligned_cols=42 Identities=17% Similarity=0.446 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHhcccc-----------CcceEeeeeeecCCChhHHhCCCEEEEe
Q 029129 11 SAASHKQLISLLSQFH-----------TKTLRQHNLFFDTSTSFLSSQRTVLRLR 54 (198)
Q Consensus 11 ~~~~~~~l~~~~~~~~-----------~~~~~~~n~YfDTpd~~L~~~~~~LRiR 54 (198)
++.+++.+.+.+.... .......|.||+.|.. ..+.-.+||-
T Consensus 63 ~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~D~fy~~~~~--~~~~~~iRVt 115 (243)
T cd07470 63 TESQHKRINEFLNELVEESSKKREKLKYEHSRTRDSFYELPNA--TGKKTKIRVS 115 (243)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCCceeeeeEEeeceEEcCCC--CCCCCcEEEE
Confidence 5677877777754311 1134558999999864 2334445655
No 21
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=33.97 E-value=58 Score=29.66 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=35.2
Q ss_pred eeeeeecCCChhHHhCC-------CEEEEe-cC----CEEEEEEecCCccccCccceeeeeecCCHHHHHhhh
Q 029129 32 QHNLFFDTSTSFLSSQR-------TVLRLR-RD----TRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECI 92 (198)
Q Consensus 32 ~~n~YfDTpd~~L~~~~-------~~LRiR-~~----~~~~~TlK~~~~~~~g~~~~~E~e~~l~~~~~~~~l 92 (198)
.++.|||..+++|-... .+||+| .| +-..+.=|+-..+-.|-+.. +...++....+..+|
T Consensus 235 itslYfDN~~fDLY~~rL~K~~~A~alRLrWyg~l~~kdIfvErkt~~e~wTgesS~-k~Rf~lkeK~Vn~fi 306 (509)
T COG5036 235 ITSLYFDNENFDLYNGRLEKLEGAEALRLRWYGKLSPKDIFVERKTHREDWTGESSF-KARFQLKEKFVNKFI 306 (509)
T ss_pred eeEEEecccchHHHhhHHHhhcCCceeEEEeecCCCCCceEEEeeecccCcccccch-hhhhhHHHHHHHHHh
Confidence 47899999999986543 499999 43 44555555544433343333 333444444444444
No 22
>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1. No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].
Probab=31.72 E-value=18 Score=25.33 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=15.5
Q ss_pred eeeeecCCChhHHhCCCE
Q 029129 33 HNLFFDTSTSFLSSQRTV 50 (198)
Q Consensus 33 ~n~YfDTpd~~L~~~~~~ 50 (198)
.--|||.-|+.|.+++..
T Consensus 34 ~rKYFDSgDyam~Ka~~~ 51 (86)
T PF04667_consen 34 KRKYFDSGDYAMAKAGKK 51 (86)
T ss_pred cccccchHHHHHHHhhcc
Confidence 468999999999999753
No 23
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=29.44 E-value=40 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHhccccCcceEeeeeeecCC
Q 029129 11 SAASHKQLISLLSQFHTKTLRQHNLFFDTS 40 (198)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~n~YfDTp 40 (198)
.|+..+++.+.+...+..-..-.-+|||||
T Consensus 23 ~pE~vr~i~d~lPies~an~WgeEiYF~tp 52 (126)
T COG2164 23 NPESVRRIYDSLPIESRANLWGEEIYFDTP 52 (126)
T ss_pred ChHHHHHHHHhCCchhhhhhccceEEeecc
Confidence 356667777765432222344577999999
No 24
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=24.35 E-value=64 Score=20.37 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=5.8
Q ss_pred eeeeecCC
Q 029129 33 HNLFFDTS 40 (198)
Q Consensus 33 ~n~YfDTp 40 (198)
...|||.|
T Consensus 14 ~~GYfd~P 21 (53)
T PF04967_consen 14 ELGYFDVP 21 (53)
T ss_pred HcCCCCCC
Confidence 44788887
Done!