Query 029130
Match_columns 198
No_of_seqs 231 out of 1270
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0872 Sterol C5 desaturase [ 100.0 5.6E-38 1.2E-42 268.9 14.4 171 22-197 3-175 (312)
2 KOG0873 C-4 sterol methyl oxid 99.7 1.2E-16 2.5E-21 138.7 11.1 117 64-185 35-158 (283)
3 COG3000 ERG3 Sterol desaturase 99.4 1.2E-11 2.7E-16 107.4 13.3 95 97-197 47-142 (271)
4 PLN02869 fatty aldehyde decarb 99.0 1.2E-09 2.5E-14 103.8 9.2 48 146-197 127-174 (620)
5 KOG0874 Sphingolipid hydroxyla 98.9 1.3E-09 2.8E-14 92.2 4.0 48 147-197 123-170 (287)
6 PF04116 FA_hydroxylase: Fatty 98.8 1.1E-09 2.3E-14 81.6 1.0 43 151-197 2-44 (114)
7 PLN02601 beta-carotene hydroxy 80.1 14 0.0003 32.8 8.6 44 140-185 127-173 (303)
8 PF13268 DUF4059: Protein of u 70.7 33 0.00072 24.3 7.0 60 55-118 4-63 (72)
9 PLN02434 fatty acid hydroxylas 63.7 12 0.00026 32.4 4.4 38 147-185 84-129 (237)
10 PF11118 DUF2627: Protein of u 50.7 41 0.00089 24.2 4.6 19 19-38 13-31 (77)
11 PF10319 7TM_GPCR_Srj: Serpent 45.9 1.6E+02 0.0035 26.5 8.7 28 98-125 236-267 (310)
12 TIGR01433 CyoA cytochrome o ub 44.0 66 0.0014 27.4 5.8 26 52-77 24-49 (226)
13 COG5528 Predicted integral mem 41.9 77 0.0017 25.3 5.3 64 58-124 79-147 (155)
14 PF04689 S1FA: DNA binding pro 40.5 82 0.0018 22.0 4.7 39 65-106 20-59 (69)
15 TIGR01432 QOXA cytochrome aa3 34.4 2.8E+02 0.006 23.2 8.8 18 100-117 63-80 (217)
16 PF13124 DUF3963: Protein of u 26.5 1.4E+02 0.0031 18.5 3.6 17 57-73 16-32 (40)
17 PF01788 PsbJ: PsbJ; InterPro 24.8 1.5E+02 0.0032 18.7 3.5 21 58-78 9-29 (40)
18 PLN02601 beta-carotene hydroxy 24.7 5.1E+02 0.011 23.2 10.9 15 178-194 253-267 (303)
19 cd01060 Membrane-FADS-like The 23.7 1.4E+02 0.003 21.4 4.0 15 172-186 49-63 (122)
20 PLN02434 fatty acid hydroxylas 22.0 2.1E+02 0.0045 24.8 5.2 37 147-184 167-206 (237)
21 PF12263 DUF3611: Protein of u 21.3 4.8E+02 0.01 21.6 9.1 31 79-110 77-108 (183)
No 1
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=100.00 E-value=5.6e-38 Score=268.86 Aligned_cols=171 Identities=39% Similarity=0.712 Sum_probs=154.7
Q ss_pred hHHHHHhhhhhhhhhhhhhhhccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccCHHH
Q 029130 22 GDDYLQLFVDETTLYNRIVLANLLPSKWWDPLPHVLQTWLRNYIAGTLLYLVSGLLWCFYVYYLKRNVYVPKDDIPTRKA 101 (198)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~lY~~~g~l~~~y~~~~~~~~~~p~~~~p~~~q 101 (198)
..+++++++++++++|+.+++..+|.+.++++||++++|++|.++|.++|+.+|++||+++|..+..+.-|..+.|++ |
T Consensus 3 ~~d~ll~v~d~tsl~~r~v~~~~lp~nl~~~~~~~ls~~~~~~~~g~ily~~~~~ls~~fVf~~al~~~~~~~~~~~r-~ 81 (312)
T KOG0872|consen 3 EMDYLLRVADETSLDNRLVYSATLPANLDEIFRQFLSLWLRVYLGGDILYFFSASLSYFFVFDKALFVHPPFLKNPTR-Q 81 (312)
T ss_pred hHHHHHHHhhhhccchHHHHhhcCCcchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccCcHH-H
Confidence 457999999999999999999999999999999999999999999999999999999999997666566666677777 9
Q ss_pred HHHHHHHHHhHhhHHhHHHHHHHHHHHhCccccccccC--ccchHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhHhh
Q 029130 102 MLLQIFVAMKAMPWYVGLPTVSEYMIENGWTKCFARIS--DIGWFAYLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLH 179 (198)
Q Consensus 102 i~~eI~~sl~~i~v~s~l~tl~~~~~~~G~t~lY~~i~--~~g~~~~i~~i~l~ll~~D~~fYw~HR~lH~~~~LYk~iH 179 (198)
+++||+.+++++|+++++++....+.++||+++|++++ ++||...+.+++++++++|+++||.||.+|+ +.+||++|
T Consensus 82 ~~~ei~~av~A~pw~sll~~~~~~m~i~gyskl~d~i~~~~~gw~~~~~~i~~flfF~Df~iYw~HR~lH~-~~vy~~LH 160 (312)
T KOG0872|consen 82 MLMEIKTAVQALPWMSLLTVPWFLMEIRGYSKLYDNIGILEYGWFLLFVSIFLFLFFTDFGIYWAHRELHH-RGVYKRLH 160 (312)
T ss_pred HHHHHHHHHHhcchHHHHhHHHHHHHHhhhHHhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHhhhc
Confidence 99999999999999999854444445599999999888 8999999999999999999999999999999 68999999
Q ss_pred hccCCCCCCCCCCCccCC
Q 029130 180 ATHHIYNKQNTLSPFAGM 197 (198)
Q Consensus 180 k~HH~~k~~~~ptPfA~~ 197 (198)
|+||+| +.+|||||.
T Consensus 161 ~~HH~~---~~~tpfAsl 175 (312)
T KOG0872|consen 161 KPHHIW---NICTPFASL 175 (312)
T ss_pred chhhhh---hccCchhhh
Confidence 999998 567999985
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.70 E-value=1.2e-16 Score=138.70 Aligned_cols=117 Identities=29% Similarity=0.482 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhhhcccccCCCCCccCHHHHHHHHHHHHhHhhHHhHHHHHHHHHHH--hCcccccc
Q 029130 64 YIAGTLLYLVSGLLWCFY-----VYYLKRNVYVPKDDIPTRKAMLLQIFVAMKAMPWYVGLPTVSEYMIE--NGWTKCFA 136 (198)
Q Consensus 64 ~i~~~~lY~~~g~l~~~y-----~~~~~~~~~~p~~~~p~~~qi~~eI~~sl~~i~v~s~l~tl~~~~~~--~G~t~lY~ 136 (198)
++...++|+..++.+.+. .-..+|.|.||+ ++|+..+++++++..+.|..+.+.+.++..+-.. .|-+.
T Consensus 35 ~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~-k~~s~~~~~kc~k~vl~n~~~v~~p~~~~~y~~~~~~~~~~--- 110 (283)
T KOG0873|consen 35 FIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPK-KNPSLSKQLKCLKVVLLNHFLVVLPLTLVSYPFVEWFGLPS--- 110 (283)
T ss_pred HHHHHHHHHHhcchheEeecccCcchhhhhccCCC-CCCCHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHhCCCc---
Confidence 455667777766653111 111258889998 4569999999999999999988887777666432 33222
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhHhhhccCCC
Q 029130 137 RISDIGWFAYLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIY 185 (198)
Q Consensus 137 ~i~~~g~~~~i~~i~l~ll~~D~~fYw~HR~lH~~~~LYk~iHk~HH~~ 185 (198)
+...+++.+++.++++|+++.|+++||.||++|+ |++||++||+||++
T Consensus 111 ~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~-~~~Yk~iHKvHHe~ 158 (283)
T KOG0873|consen 111 GAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHH-KWLYKYIHKVHHEY 158 (283)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHhhhhcc
Confidence 2445688899999999999999999999999997 99999999999998
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.36 E-value=1.2e-11 Score=107.43 Aligned_cols=95 Identities=22% Similarity=0.451 Sum_probs=69.9
Q ss_pred cCHHHHHHHHHHHHh-HhhHHhHHHHHHHHHHHhCccccccccCccchHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Q 029130 97 PTRKAMLLQIFVAMK-AMPWYVGLPTVSEYMIENGWTKCFARISDIGWFAYLVYLVIYLVLVEFGIYWMHRELHDIKFLY 175 (198)
Q Consensus 97 p~~~qi~~eI~~sl~-~i~v~s~l~tl~~~~~~~G~t~lY~~i~~~g~~~~i~~i~l~ll~~D~~fYw~HR~lH~~~~LY 175 (198)
+.+++...++..... +++....+.++..+....|+.......+ +....++++++++++.|+++||.||+.|++ .++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~D~~~Y~~HR~~H~~-~~~ 123 (271)
T COG3000 47 PTRDWLLDLVLLTLSISVVGLVLLLALILWALLGGYLPGLGVAP--GPLPFALQLLLAFLFLDLGYYWAHRLLHRV-PLL 123 (271)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC--cchHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHH
Confidence 455567777776664 6666666655555555567766533222 344557899999999999999999999995 566
Q ss_pred hHhhhccCCCCCCCCCCCccCC
Q 029130 176 KHLHATHHIYNKQNTLSPFAGM 197 (198)
Q Consensus 176 k~iHk~HH~~k~~~~ptPfA~~ 197 (198)
+.+||+||+. .+|+|++|.
T Consensus 124 w~~H~~HH~~---~~~~~~t~~ 142 (271)
T COG3000 124 WAFHKVHHSS---EVPDPLTAL 142 (271)
T ss_pred HHHHHhhcCc---ccCCchhhh
Confidence 6899999996 799999875
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.01 E-value=1.2e-09 Score=103.77 Aligned_cols=48 Identities=33% Similarity=0.708 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhhHhhhccCCCCCCCCCCCccCC
Q 029130 146 YLVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGM 197 (198)
Q Consensus 146 ~i~~i~l~ll~~D~~fYw~HR~lH~~~~LYk~iHk~HH~~k~~~~ptPfA~~ 197 (198)
++..+++++...|++|||+||++|+ +++|+++|++||++ ++|+|++++
T Consensus 127 ~l~~~Llhv~~~Df~fYW~HRllH~-~~LYwr~HkvHHss---~~~~P~Ts~ 174 (620)
T PLN02869 127 VLITILLHMGPVEFLYYWLHRALHH-HYLYSRYHSHHHSS---IVTEPITSV 174 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhhccCC---CCCCchhhh
Confidence 3566788888999999999999999 78999999999996 789999875
No 5
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=98.89 E-value=1.3e-09 Score=92.19 Aligned_cols=48 Identities=27% Similarity=0.526 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhhHhhhccCCCCCCCCCCCccCC
Q 029130 147 LVYLVIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGM 197 (198)
Q Consensus 147 i~~i~l~ll~~D~~fYw~HR~lH~~~~LYk~iHk~HH~~k~~~~ptPfA~~ 197 (198)
..+++..+++.|+|-|.+||.||.+|.|||++|+.||+- +.|-...++
T Consensus 123 A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL---~VPYayGAL 170 (287)
T KOG0874|consen 123 ARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRL---IVPYAYGAL 170 (287)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeE---ecchhhhhh
Confidence 578899999999999999999999999999999999995 666655443
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.81 E-value=1.1e-09 Score=81.65 Aligned_cols=43 Identities=37% Similarity=0.786 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhhHhhhccCCCCCCCCCCCccCC
Q 029130 151 VIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGM 197 (198)
Q Consensus 151 ~l~ll~~D~~fYw~HR~lH~~~~LYk~iHk~HH~~k~~~~ptPfA~~ 197 (198)
++.+++.|+++||+||++|..|++| ++|+.||+. .+|+|+++.
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~---~~~~~~~~~ 44 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSP---KNPTPLSAF 44 (114)
T ss_pred eeeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCC---cccCchHHH
Confidence 4578899999999999999668999 689999985 688888753
No 7
>PLN02601 beta-carotene hydroxylase
Probab=80.10 E-value=14 Score=32.85 Aligned_cols=44 Identities=27% Similarity=0.436 Sum_probs=32.1
Q ss_pred ccchHHHHHHH---HHHHHHHHHHHHHHHhhcCCcchhhhHhhhccCCC
Q 029130 140 DIGWFAYLVYL---VIYLVLVEFGIYWMHRELHDIKFLYKHLHATHHIY 185 (198)
Q Consensus 140 ~~g~~~~i~~i---~l~ll~~D~~fYw~HR~lH~~~~LYk~iHk~HH~~ 185 (198)
+.++..++..+ +.-++..|++-.|.||..=| .++|. +|+-||+.
T Consensus 127 ~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMH-G~LW~-lH~sHH~P 173 (303)
T PLN02601 127 EVSMLEMFGTFALSVGAAVGMEFWARWAHRALWH-DSLWN-MHESHHKP 173 (303)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchh-hhhhcCCC
Confidence 45555544332 44566779999999998766 68997 79999985
No 8
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=70.73 E-value=33 Score=24.33 Aligned_cols=60 Identities=13% Similarity=0.326 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccCHHHHHHHHHHHHhHhhHHhH
Q 029130 55 HVLQTWLRNYIAGTLLYLVSGLLWCFYVYYLKRNVYVPKDDIPTRKAMLLQIFVAMKAMPWYVG 118 (198)
Q Consensus 55 ~~~~~~~~~~i~~~~lY~~~g~l~~~y~~~~~~~~~~p~~~~p~~~qi~~eI~~sl~~i~v~s~ 118 (198)
+..++++-..+.+.+.-.+.+++|-++.-.+++. |......+..-+-+..++.++|+.++
T Consensus 4 ~if~lYlqgL~ls~i~V~~~~~~wi~~Ra~~~~D----KT~~eRQa~LyD~lmi~ImtIPILSF 63 (72)
T PF13268_consen 4 EIFSLYLQGLLLSSILVLLVSGIWILWRALRKKD----KTAKERQAFLYDMLMIAIMTIPILSF 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455665555665555566677764443222211 11111223355556666677777765
No 9
>PLN02434 fatty acid hydroxylase
Probab=63.74 E-value=12 Score=32.35 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCc--------chhhhHhhhccCCC
Q 029130 147 LVYLVIYLVLVEFGIYWMHRELHDI--------KFLYKHLHATHHIY 185 (198)
Q Consensus 147 i~~i~l~ll~~D~~fYw~HR~lH~~--------~~LYk~iHk~HH~~ 185 (198)
+..+++.+++--+.=|.+||.+=|. +..| .+|..||+.
T Consensus 84 ~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hf-llHg~HH~~ 129 (237)
T PLN02434 84 VLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHY-LLHGCHHKH 129 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH-HHHHHhhcC
Confidence 3445666666677789999976442 2223 478899985
No 10
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=50.67 E-value=41 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=12.3
Q ss_pred CcchHHHHHhhhhhhhhhhh
Q 029130 19 PAMGDDYLQLFVDETTLYNR 38 (198)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (198)
|...+.|==....|+ .++.
T Consensus 13 Pg~~a~yGiklMRD~-~F~~ 31 (77)
T PF11118_consen 13 PGILAAYGIKLMRDT-VFGI 31 (77)
T ss_pred HHHHHHHHHHHHHHH-HHHH
Confidence 556666666777787 5543
No 11
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=45.93 E-value=1.6e+02 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhHh---hHH-hHHHHHHHH
Q 029130 98 TRKAMLLQIFVAMKAM---PWY-VGLPTVSEY 125 (198)
Q Consensus 98 ~~~qi~~eI~~sl~~i---~v~-s~l~tl~~~ 125 (198)
+.+++++|+..++... |+. +..|++..|
T Consensus 236 ~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~w 267 (310)
T PF10319_consen 236 KTKRLQRQLFKALIVQTVIPICVSFSPCVLSW 267 (310)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhccHHHHH
Confidence 5677899998888443 533 555555444
No 12
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=44.04 E-value=66 Score=27.37 Aligned_cols=26 Identities=12% Similarity=-0.136 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029130 52 PLPHVLQTWLRNYIAGTLLYLVSGLL 77 (198)
Q Consensus 52 ~~~~~~~~~~~~~i~~~~lY~~~g~l 77 (198)
.-++...+|....+++.++..++.++
T Consensus 24 ~a~~~~~l~~~~~~~~~ii~v~v~~~ 49 (226)
T TIGR01433 24 IGLEERSLILTAFGLMLLVVIPVILM 49 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566655556655555554444
No 13
>COG5528 Predicted integral membrane protein [Function unknown]
Probab=41.92 E-value=77 Score=25.27 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC----CCCccCHHHHHHHHHHHH-hHhhHHhHHHHHHH
Q 029130 58 QTWLRNYIAGTLLYLVSGLLWCFYVYYLKRNVYVP----KDDIPTRKAMLLQIFVAM-KAMPWYVGLPTVSE 124 (198)
Q Consensus 58 ~~~~~~~i~~~~lY~~~g~l~~~y~~~~~~~~~~p----~~~~p~~~qi~~eI~~sl-~~i~v~s~l~tl~~ 124 (198)
+.|+ .+|..+|.++|.+|.=.+....|.+.+. +--.|.++|--++++... .+.|-++...++.+
T Consensus 79 ~gWl---l~sl~LYvvtg~fWLpvvw~qmr~rrlAeaA~~AGepLp~~y~rlfrvwfv~gfpafaavlAi~w 147 (155)
T COG5528 79 QGWL---LFSLCLYVVTGIFWLPVVWRQMRVRRLAEAAETAGEPLPEQYLRLFRVWFVMGFPAFAAVLAIAW 147 (155)
T ss_pred chHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4454 3466699999998855554322332221 112356788889998876 55665544434443
No 14
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.49 E-value=82 Score=22.00 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCC-ccCHHHHHHHH
Q 029130 65 IAGTLLYLVSGLLWCFYVYYLKRNVYVPKDD-IPTRKAMLLQI 106 (198)
Q Consensus 65 i~~~~lY~~~g~l~~~y~~~~~~~~~~p~~~-~p~~~qi~~eI 106 (198)
|+|.++-|++|-+. .|+|-.+. .-|+.+ +.+++.+++|-
T Consensus 20 V~g~ll~flvGnyv-lY~Yaqk~--lpp~kkkpvskkk~k~e~ 59 (69)
T PF04689_consen 20 VAGLLLVFLVGNYV-LYVYAQKT--LPPKKKKPVSKKKMKRER 59 (69)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhc--CCCCCCCcccHHHHHHHH
Confidence 45555555555543 23332222 123322 23667777764
No 15
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=34.38 E-value=2.8e+02 Score=23.20 Aligned_cols=18 Identities=6% Similarity=0.089 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhHhhHHh
Q 029130 100 KAMLLQIFVAMKAMPWYV 117 (198)
Q Consensus 100 ~qi~~eI~~sl~~i~v~s 117 (198)
++-+.|+.+++.-+.+..
T Consensus 63 ~n~~LEiiWTiIP~lIl~ 80 (217)
T TIGR01432 63 GNAILETIWTVIPIIIVI 80 (217)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 344568877665444433
No 16
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=26.47 E-value=1.4e+02 Score=18.49 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029130 57 LQTWLRNYIAGTLLYLV 73 (198)
Q Consensus 57 ~~~~~~~~i~~~~lY~~ 73 (198)
+|-|++|..++..+..+
T Consensus 16 iqkwirnit~cfal~vv 32 (40)
T PF13124_consen 16 IQKWIRNITFCFALLVV 32 (40)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999998887776555
No 17
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=24.77 E-value=1.5e+02 Score=18.72 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029130 58 QTWLRNYIAGTLLYLVSGLLW 78 (198)
Q Consensus 58 ~~~~~~~i~~~~lY~~~g~l~ 78 (198)
-+|++.+++|+++-.+.|.+.
T Consensus 9 PLWlVgtv~G~~vi~lvglFf 29 (40)
T PF01788_consen 9 PLWLVGTVAGIAVIGLVGLFF 29 (40)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhe
Confidence 479999999987766666653
No 18
>PLN02601 beta-carotene hydroxylase
Probab=24.71 E-value=5.1e+02 Score=23.20 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=9.8
Q ss_pred hhhccCCCCCCCCCCCc
Q 029130 178 LHATHHIYNKQNTLSPF 194 (198)
Q Consensus 178 iHk~HH~~k~~~~ptPf 194 (198)
.|++||+-| ..-.||
T Consensus 253 AHklHHa~K--e~Gv~F 267 (303)
T PLN02601 253 AHQLHHTDK--FKGVPY 267 (303)
T ss_pred HHHhhccCC--cCCccc
Confidence 699999843 334444
No 19
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=23.68 E-value=1.4e+02 Score=21.43 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=11.7
Q ss_pred chhhhHhhhccCCCC
Q 029130 172 KFLYKHLHATHHIYN 186 (198)
Q Consensus 172 ~~LYk~iHk~HH~~k 186 (198)
+..|+..|..||+..
T Consensus 49 ~~~~~~~H~~HH~~~ 63 (122)
T cd01060 49 YGWWRRSHRRHHRYT 63 (122)
T ss_pred HHHHHHHHHHHhcCc
Confidence 567888898899863
No 20
>PLN02434 fatty acid hydroxylase
Probab=22.05 E-value=2.1e+02 Score=24.75 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchh---hhHhhhccCC
Q 029130 147 LVYLVIYLVLVEFGIYWMHRELHDIKFL---YKHLHATHHI 184 (198)
Q Consensus 147 i~~i~l~ll~~D~~fYw~HR~lH~~~~L---Yk~iHk~HH~ 184 (198)
+...++..++.|..=|..|..--. +.. -|+-|..||-
T Consensus 167 ~~G~l~gYl~Yd~~Hy~lH~~~p~-~~~~r~lkr~H~~HHf 206 (237)
T PLN02434 167 FGGGLLGYVMYDCTHYFLHHGQPS-TDVLRNLKKYHLNHHF 206 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHcC
Confidence 344566667788877777764221 112 2446999995
No 21
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=21.30 E-value=4.8e+02 Score=21.61 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHhhhccccc-CCCCCccCHHHHHHHHHHHH
Q 029130 79 CFYVYYLKRNVY-VPKDDIPTRKAMLLQIFVAM 110 (198)
Q Consensus 79 ~~y~~~~~~~~~-~p~~~~p~~~qi~~eI~~sl 110 (198)
+.|+...||.+. .|. ..|+|.+..+.++.++
T Consensus 77 fry~Rlar~L~~~~~~-~~P~k~~~~~~l~~Gl 108 (183)
T PF12263_consen 77 FRYTRLARRLRSPNPA-KRPSKADVVRLLRIGL 108 (183)
T ss_pred HHHHHHHHHhcccCCC-CCCCHHHHHHHHHHHH
Confidence 334444455442 333 3467777666666665
Done!