Query 029130
Match_columns 198
No_of_seqs 231 out of 1270
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gsm_B Cytochrome C oxidase su 38.1 1.7E+02 0.0058 24.2 9.0 62 52-116 25-87 (262)
2 2ks1_B Epidermal growth factor 33.9 52 0.0018 20.2 3.6 21 63-83 16-36 (44)
3 2l2t_A Receptor tyrosine-prote 33.5 68 0.0023 19.7 4.1 22 62-83 14-35 (44)
4 2jwa_A Receptor tyrosine-prote 28.5 1E+02 0.0036 18.8 4.4 23 61-83 14-36 (44)
5 3arc_J Photosystem II reaction 20.1 1.3E+02 0.0046 18.0 3.5 21 58-78 9-29 (40)
6 3hb3_B Cytochrome C oxidase su 17.9 4.4E+02 0.015 22.2 8.8 17 100-116 102-118 (298)
7 1fft_B Ubiquinol oxidase; elec 12.7 1.6E+02 0.0055 25.1 3.6 17 100-116 84-100 (315)
8 2l9u_A Receptor tyrosine-prote 12.6 2.2E+02 0.0077 16.6 3.1 20 151-170 18-37 (40)
9 4hkr_A Calcium release-activat 10.4 4.1E+02 0.014 21.5 5.1 32 52-83 107-139 (214)
10 4hkr_A Calcium release-activat 9.1 2.7E+02 0.0093 22.6 3.5 42 129-170 134-175 (214)
No 1
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=38.15 E-value=1.7e+02 Score=24.18 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccCCCCCccCHHHHHHHHHHHHhHhhHH
Q 029130 52 PLPHVLQTWLRNYIAGTLLYLVSGLLWCFYVYY-LKRNVYVPKDDIPTRKAMLLQIFVAMKAMPWY 116 (198)
Q Consensus 52 ~~~~~~~~~~~~~i~~~~lY~~~g~l~~~y~~~-~~~~~~~p~~~~p~~~qi~~eI~~sl~~i~v~ 116 (198)
...+...++-...+...++.+++.++..+.+++ +++....|+. ..+....|+.+++.-+.+.
T Consensus 25 ~a~~i~~l~~~~~~i~~~I~v~V~~ll~~~~~r~r~~~~~~~~~---~~~n~~lEiiWTiiP~iIL 87 (262)
T 2gsm_B 25 VATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPAR---FTHNSPLEIAWTIVPIVIL 87 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTCCSCCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccccceeeeehhHHHHHHH
Confidence 344455554444444444444433333233321 2211111221 2334567888877544433
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.94 E-value=52 Score=20.15 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029130 63 NYIAGTLLYLVSGLLWCFYVY 83 (198)
Q Consensus 63 ~~i~~~~lY~~~g~l~~~y~~ 83 (198)
..++|.++-.+.+..+++|..
T Consensus 16 gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHhh
Confidence 346667666666665545553
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=33.52 E-value=68 Score=19.66 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029130 62 RNYIAGTLLYLVSGLLWCFYVY 83 (198)
Q Consensus 62 ~~~i~~~~lY~~~g~l~~~y~~ 83 (198)
...++|.++..+.+..+++|..
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHhh
Confidence 3446777777776666545553
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.49 E-value=1e+02 Score=18.82 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029130 61 LRNYIAGTLLYLVSGLLWCFYVY 83 (198)
Q Consensus 61 ~~~~i~~~~lY~~~g~l~~~y~~ 83 (198)
+...+.|.++.++.+..+.+|+.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhee
Confidence 34445566666666666544553
No 5
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=20.06 E-value=1.3e+02 Score=18.01 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029130 58 QTWLRNYIAGTLLYLVSGLLW 78 (198)
Q Consensus 58 ~~~~~~~i~~~~lY~~~g~l~ 78 (198)
-+|++.+++|+.+--+.|.+.
T Consensus 9 PLWlvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 9 PLWIVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeeeeehhhhhhheeeEEE
Confidence 379999999987755555553
No 6
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=17.92 E-value=4.4e+02 Score=22.17 Aligned_cols=17 Identities=0% Similarity=0.059 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHhhHH
Q 029130 100 KAMLLQIFVAMKAMPWY 116 (198)
Q Consensus 100 ~qi~~eI~~sl~~i~v~ 116 (198)
+..+.|+.+++.-+.+.
T Consensus 102 ~n~~LEiiWTiiP~iIL 118 (298)
T 3hb3_B 102 HNTPIEVIWTLVPVLIL 118 (298)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCceeehhhHHHHHHHH
Confidence 34567888877544433
No 7
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=12.74 E-value=1.6e+02 Score=25.13 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHhhHH
Q 029130 100 KAMLLQIFVAMKAMPWY 116 (198)
Q Consensus 100 ~qi~~eI~~sl~~i~v~ 116 (198)
+..+.|+.+++.-+.+.
T Consensus 84 ~~~~lEiiWt~iP~iil 100 (315)
T 1fft_B 84 HSNKVEAVVWTVPILII 100 (315)
T ss_dssp CCSHHHHHTTHHHHHHH
T ss_pred ccceeehhhhHHHHHHH
Confidence 34466887766544443
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=12.57 E-value=2.2e+02 Score=16.63 Aligned_cols=20 Identities=35% Similarity=0.678 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 029130 151 VIYLVLVEFGIYWMHRELHD 170 (198)
Q Consensus 151 ~l~ll~~D~~fYw~HR~lH~ 170 (198)
++++++-.++-||--|-.|+
T Consensus 18 vif~~lg~tflywrgrrhhh 37 (40)
T 2l9u_A 18 VIFMMLGGTFLYWRGRRHHH 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCceeEEEccccccc
Confidence 67777888889998876665
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=10.42 E-value=4.1e+02 Score=21.52 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=23.9
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 029130 52 PLPHVLQT-WLRNYIAGTLLYLVSGLLWCFYVY 83 (198)
Q Consensus 52 ~~~~~~~~-~~~~~i~~~~lY~~~g~l~~~y~~ 83 (198)
.++.++.+ |...++.|++|+++--.+.++..|
T Consensus 107 r~~~yIE~AW~fST~lGi~LFL~evall~WVKF 139 (214)
T 4hkr_A 107 RLHWYIETAWAFSTLLGLILFLLEIAILCWVKF 139 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEe
Confidence 36777875 999999999999995555544444
No 10
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=9.12 E-value=2.7e+02 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.433 Sum_probs=27.0
Q ss_pred hCccccccccCccchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029130 129 NGWTKCFARISDIGWFAYLVYLVIYLVLVEFGIYWMHRELHD 170 (198)
Q Consensus 129 ~G~t~lY~~i~~~g~~~~i~~i~l~ll~~D~~fYw~HR~lH~ 170 (198)
-+|.+.|+.-..++|...+.-+++.+++.-|.+=.+|.+..|
T Consensus 134 l~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFYrsL~~h 175 (214)
T 4hkr_A 134 LCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFYRSLVSH 175 (214)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676653334566666666677777777766666777766
Done!