Query 029130
Match_columns 198
No_of_seqs 231 out of 1270
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 12:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 54.9 5 0.00036 26.5 3.3 11 101-111 59-69 (91)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 39.7 44 0.0032 21.7 9.7 18 100-117 67-84 (100)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 32.8 28 0.0021 18.8 3.5 20 59-78 4-23 (34)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 24.9 87 0.0063 20.5 9.7 18 101-118 74-91 (107)
5 d1q90n_ f.23.27.1 (N:) PetN su 15.8 5.7 0.00041 21.1 -1.7 17 1-17 14-30 (31)
6 d1v2za_ a.186.1.1 (A:) Circadi 8.5 2.3E+02 0.017 18.7 4.3 44 11-60 3-46 (106)
7 d1rlfa_ d.15.1.5 (A:) RalGDS-l 7.5 63 0.0046 21.2 0.9 40 9-48 23-62 (90)
8 d2oara1 f.16.1.1 (A:10-118) Ga 7.3 2.1E+02 0.016 18.7 3.8 11 97-107 99-109 (109)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.3 2.6E+02 0.019 16.1 4.5 30 103-132 5-34 (57)
10 d1r8ja1 a.186.1.1 (A:177-282) 5.9 3.1E+02 0.022 18.0 3.9 27 13-42 2-28 (106)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=54.90 E-value=5 Score=26.49 Aligned_cols=11 Identities=9% Similarity=-0.085 Sum_probs=7.2
Q ss_pred HHHHHHHHHHh
Q 029130 101 AMLLQIFVAMK 111 (198)
Q Consensus 101 qi~~eI~~sl~ 111 (198)
+-+.|+.+++.
T Consensus 59 n~~lEi~WtiI 69 (91)
T d1fftb2 59 SNKVEAVVWTV 69 (91)
T ss_dssp CSHHHHHTTHH
T ss_pred CceehhhHHHH
Confidence 34568877774
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=39.67 E-value=44 Score=21.66 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHhhHHh
Q 029130 100 KAMLLQIFVAMKAMPWYV 117 (198)
Q Consensus 100 ~qi~~eI~~sl~~i~v~s 117 (198)
++.+.|+.+++.-+.+..
T Consensus 67 ~n~~LEiiWTviP~lILi 84 (100)
T d3dtub2 67 HNSPLEIAWTIVPIVILV 84 (100)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 344789988875544443
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.78 E-value=28 Score=18.76 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029130 59 TWLRNYIAGTLLYLVSGLLW 78 (198)
Q Consensus 59 ~~~~~~i~~~~lY~~~g~l~ 78 (198)
+|++.+++|+.+-.+.|.+.
T Consensus 4 LWlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 4 LWIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeehhhhhhHhheeeee
Confidence 79999999998877777664
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=24.93 E-value=87 Score=20.45 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHhhHHhH
Q 029130 101 AMLLQIFVAMKAMPWYVG 118 (198)
Q Consensus 101 qi~~eI~~sl~~i~v~s~ 118 (198)
+-+.|+.+++.-+.+..+
T Consensus 74 n~~lEi~WTviP~lIL~~ 91 (107)
T d3ehbb2 74 NTPIEVIWTLVPVLILVA 91 (107)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 347899888865444433
No 5
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=15.81 E-value=5.7 Score=21.09 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=12.9
Q ss_pred CccccchheeehhhccC
Q 029130 1 MQTLSLSLSLLFFYRSK 17 (198)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (198)
|-|.|.||||...-||.
T Consensus 14 ~atfsfslslvvwgrsg 30 (31)
T d1q90n_ 14 CVMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHhheeeEEEEEEeccC
Confidence 45778899988887764
No 6
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=8.46 E-value=2.3e+02 Score=18.71 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=29.7
Q ss_pred ehhhccCCCcchHHHHHhhhhhhhhhhhhhhhccCCCCcccchHHHHHHH
Q 029130 11 LFFYRSKSPAMGDDYLQLFVDETTLYNRIVLANLLPSKWWDPLPHVLQTW 60 (198)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 60 (198)
-+|+|+-+|+=..+.++++..+ |.+++++ .+..+ ..+-+.+-.+
T Consensus 3 ~~f~r~l~p~ErqeLL~~Lk~~---YR~IlLs-YFs~d--~~~nq~id~f 46 (106)
T d1v2za_ 3 AFFFRRMSPADKRKLLDELRSI---YRTIVLE-YFNTD--AKVNERIDEF 46 (106)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHH---HHHHHHH-TTCTT--SCHHHHHHHH
T ss_pred hHHHhcCCHHHHHHHHHHHHHH---HHHHHHH-HhCCc--HHHHHHHHHH
Confidence 3689999999999999998876 4777773 33333 3344444443
No 7
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.46 E-value=63 Score=21.16 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=32.0
Q ss_pred eeehhhccCCCcchHHHHHhhhhhhhhhhhhhhhccCCCC
Q 029130 9 SLLFFYRSKSPAMGDDYLQLFVDETTLYNRIVLANLLPSK 48 (198)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 48 (198)
|++.--..|.|+|.+..|+.+--|.+.=+++.+..++|++
T Consensus 23 SIlltsqDktP~VI~rAl~Kh~l~~~~~~~Y~L~QvLp~d 62 (90)
T d1rlfa_ 23 SILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPGD 62 (90)
T ss_dssp EEEEETTCCCTTHHHHHHHHTTTTSCCCCCEEEEETTTTC
T ss_pred EEEEecCCcCHHHHHHHHHHhCCCCCCccceEEEEEcCCC
Confidence 3444456699999999999998888776777888889976
No 8
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.34 E-value=2.1e+02 Score=18.74 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=5.9
Q ss_pred cCHHHHHHHHH
Q 029130 97 PTRKAMLLQIF 107 (198)
Q Consensus 97 p~~~qi~~eI~ 107 (198)
|+..+...||+
T Consensus 99 p~e~~LL~EIR 109 (109)
T d2oara1 99 DTQVVLLTEIR 109 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred CcHHHHHHhhC
Confidence 33445666764
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.26 E-value=2.6e+02 Score=16.09 Aligned_cols=30 Identities=10% Similarity=-0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHhHhhHHhHHHHHHHHHHHhCcc
Q 029130 103 LLQIFVAMKAMPWYVGLPTVSEYMIENGWT 132 (198)
Q Consensus 103 ~~eI~~sl~~i~v~s~l~tl~~~~~~~G~t 132 (198)
+||+..++.-+.+..++.+...+..|+|-.
T Consensus 5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~~~ 34 (57)
T d2h8pc1 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAP 34 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666665555554555566677786653
No 10
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=5.93 E-value=3.1e+02 Score=18.03 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=21.6
Q ss_pred hhccCCCcchHHHHHhhhhhhhhhhhhhhh
Q 029130 13 FYRSKSPAMGDDYLQLFVDETTLYNRIVLA 42 (198)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (198)
|+|+-+|+=..+.++++..+ |.+++++
T Consensus 2 Flr~L~p~ErqeLL~~Lk~~---YR~IlLs 28 (106)
T d1r8ja1 2 FLRNLPAYESQKLHQAMQTS---YREIVLS 28 (106)
T ss_dssp STTTSCHHHHHHHHHHHHHH---HHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHH---HHHHHHH
Confidence 78899999888988888766 4777773
Done!