BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029131
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 47 RSEKIVEVLMINSTSGPG-LLFPKGGWENDETVXXXXXXXXXXXXGVRGHLKEFLGYYDF 105
RSE+ EVL+++S+ P + P GG E +E GV+G L LG ++
Sbjct: 11 RSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFEQ 70
Query: 106 KSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQST--RQRSWLTVPEAIEC--CRHPWM 161
QD PE + ++ L V E LE W + + R+R W V +AI+ C P
Sbjct: 71 N----QD---PEH--RTYVYVLTVTELLEDWEDSVSIGRKREWFKVEDAIKVLQCHKPVH 121
Query: 162 QEALEK 167
E LEK
Sbjct: 122 AEYLEK 127
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 47 RSEKIVEVLMINSTSGPG-LLFPKGGWENDETVXXXXXXXXXXXXGVRGHLKEFLGYYDF 105
RSE+ EVL+++S+ P + P GG E +E GV+G L LG ++
Sbjct: 19 RSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFEN 78
Query: 106 KSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQST--RQRSWLTVPEAIEC--CRHPWM 161
+ + + ++ L V E LE W + R+R W V +AI+ C P
Sbjct: 79 QDRK----------HRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVH 128
Query: 162 QEALEKGFLKL 172
E LEK LKL
Sbjct: 129 AEYLEK--LKL 137
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 47 RSEKIVEVLMINSTSGPGL-LFPKGGWENDETVXXXXXXXXXXXXGVRGHLKEFLGYYDF 105
RSE EVL+++S+ P + P GG E +E GV+G L +G ++
Sbjct: 49 RSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFEN 108
Query: 106 KSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQST--RQRSWLTVPEAIECCR-HPWMQ 162
+ + + ++ L+V E LE W + R+R W + +AI+ + H +Q
Sbjct: 109 QERK----------HRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQ 158
Query: 163 ----EALEKGFLKLYADHMISTS 181
E L +G+ +++T+
Sbjct: 159 ASYFETLRQGYSANNGTPVVATT 181
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 53 EVLMINSTSGPGLLFPKGGWENDETVXXXXXXXXXXXXGVRGHLKEFLG----YYDFKSK 108
EVL+I + S FPKG E E GV+G + +++G +Y K
Sbjct: 16 EVLLIKTPSNV-WSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKG- 73
Query: 109 TLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKG 168
E + K + L+ +E E P + + + EA + ++ +E EK
Sbjct: 74 --------ERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKA 125
Query: 169 FLKL 172
LKL
Sbjct: 126 -LKL 128
>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific
Kinase 2 (Srpk2) Bound To Purvalanol B
Length = 389
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 94 GHLKEFLG----YYDFKSKTLQDEFSPEG-------LCKAAMFALLVKEELESWPEQSTR 142
H+ E LG ++ K ++ F+ G L ++F +LV E WP +
Sbjct: 301 AHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLV--EKYGWPHEDAA 358
Query: 143 QRSWLTVP----------EAIECCRHPWMQ 162
Q + +P A EC RHPW+
Sbjct: 359 QFTDFLIPMLEMVPEKRASAGECLRHPWLN 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,424,626
Number of Sequences: 62578
Number of extensions: 190169
Number of successful extensions: 301
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 7
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)