Query 029131
Match_columns 198
No_of_seqs 216 out of 1983
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03673 Ap6A_hydrolase Diadeno 99.9 3.1E-23 6.8E-28 151.9 14.8 129 20-170 1-130 (131)
2 cd04666 Nudix_Hydrolase_9 Memb 99.9 4.1E-23 8.9E-28 150.7 14.2 120 21-161 1-121 (122)
3 KOG2839 Diadenosine and diphos 99.9 4.8E-23 1E-27 150.2 11.2 139 13-175 1-144 (145)
4 cd03428 Ap4A_hydrolase_human_l 99.9 8.7E-22 1.9E-26 144.5 12.5 126 20-167 2-127 (130)
5 cd04684 Nudix_Hydrolase_25 Con 99.9 4.1E-21 8.8E-26 140.1 14.1 111 53-165 12-127 (128)
6 PRK09438 nudB dihydroneopterin 99.9 3.1E-21 6.7E-26 145.0 13.6 133 19-174 6-147 (148)
7 cd04695 Nudix_Hydrolase_36 Mem 99.9 4.9E-21 1.1E-25 141.1 13.4 125 23-170 2-128 (131)
8 cd03674 Nudix_Hydrolase_1 Memb 99.9 2.4E-20 5.1E-25 138.7 15.1 127 20-167 2-135 (138)
9 cd03430 GDPMH GDP-mannose glyc 99.9 2.9E-20 6.3E-25 139.4 15.0 125 18-162 10-140 (144)
10 cd04679 Nudix_Hydrolase_20 Mem 99.8 3.9E-20 8.4E-25 135.0 13.0 112 19-156 1-116 (125)
11 cd04700 DR1025_like DR1025 fro 99.8 4.5E-20 9.9E-25 137.9 13.4 117 19-162 12-132 (142)
12 cd04680 Nudix_Hydrolase_21 Mem 99.8 3.3E-20 7.1E-25 134.1 12.0 104 53-165 13-117 (120)
13 cd03675 Nudix_Hydrolase_2 Cont 99.8 1.7E-19 3.6E-24 133.1 15.5 111 53-170 12-128 (134)
14 PRK15434 GDP-mannose mannosyl 99.8 1.5E-19 3.2E-24 137.5 15.0 120 17-156 14-138 (159)
15 cd03672 Dcp2p mRNA decapping e 99.8 7.4E-20 1.6E-24 137.3 12.8 127 22-177 3-142 (145)
16 cd04687 Nudix_Hydrolase_28 Mem 99.8 9.9E-20 2.1E-24 133.5 13.2 119 20-159 1-125 (128)
17 PLN02325 nudix hydrolase 99.8 1.1E-19 2.3E-24 136.3 13.3 125 17-167 6-136 (144)
18 PF00293 NUDIX: NUDIX domain; 99.8 2.1E-19 4.6E-24 131.5 14.1 124 19-167 1-131 (134)
19 cd04696 Nudix_Hydrolase_37 Mem 99.8 1.9E-19 4.1E-24 131.4 13.7 109 53-165 15-124 (125)
20 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.6E-19 3.5E-24 132.4 13.1 109 52-165 15-128 (129)
21 cd04673 Nudix_Hydrolase_15 Mem 99.8 1.8E-19 3.9E-24 130.4 12.9 105 53-160 12-119 (122)
22 cd04676 Nudix_Hydrolase_17 Mem 99.8 2.8E-19 6.1E-24 130.2 13.9 111 53-166 15-128 (129)
23 cd04677 Nudix_Hydrolase_18 Mem 99.8 1.9E-19 4.1E-24 132.3 12.8 104 53-157 20-124 (132)
24 cd03427 MTH1 MutT homolog-1 (M 99.8 2.2E-19 4.8E-24 132.9 13.0 110 53-170 13-125 (137)
25 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.9E-19 4.2E-24 132.0 12.3 111 53-167 14-128 (130)
26 cd04688 Nudix_Hydrolase_29 Mem 99.8 3.4E-19 7.3E-24 130.2 13.2 103 53-159 13-122 (126)
27 cd04690 Nudix_Hydrolase_31 Mem 99.8 2.3E-19 4.9E-24 129.5 11.2 100 53-159 13-114 (118)
28 cd04667 Nudix_Hydrolase_10 Mem 99.8 2.6E-19 5.5E-24 128.4 11.4 98 53-163 12-109 (112)
29 cd04689 Nudix_Hydrolase_30 Mem 99.8 8.7E-19 1.9E-23 127.9 14.3 97 53-153 13-112 (125)
30 cd04672 Nudix_Hydrolase_14 Mem 99.8 6E-19 1.3E-23 128.5 12.4 100 53-156 14-113 (123)
31 cd03671 Ap4A_hydrolase_plant_l 99.8 1.5E-18 3.3E-23 130.3 14.8 118 19-156 2-132 (147)
32 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.1E-18 2.3E-23 128.0 13.2 111 19-155 1-117 (129)
33 cd04511 Nudix_Hydrolase_4 Memb 99.8 6.2E-19 1.3E-23 129.7 11.9 113 18-162 11-127 (130)
34 COG1051 ADP-ribose pyrophospha 99.8 8.3E-19 1.8E-23 131.6 12.4 112 18-156 8-123 (145)
35 cd04669 Nudix_Hydrolase_11 Mem 99.8 1.3E-18 2.8E-23 126.6 12.7 95 53-159 13-118 (121)
36 PRK10546 pyrimidine (deoxy)nuc 99.8 1.8E-18 3.9E-23 127.6 13.6 114 53-177 16-133 (135)
37 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.1E-18 2.4E-23 126.3 12.0 97 53-156 12-115 (120)
38 cd03429 NADH_pyrophosphatase N 99.8 1.1E-18 2.4E-23 128.7 12.1 94 52-155 12-107 (131)
39 cd04670 Nudix_Hydrolase_12 Mem 99.8 2.5E-18 5.4E-23 125.8 13.6 100 53-160 15-118 (127)
40 cd04686 Nudix_Hydrolase_27 Mem 99.8 3.2E-18 6.8E-23 126.2 13.3 102 53-155 12-119 (131)
41 PRK15472 nucleoside triphospha 99.8 3.2E-18 6.9E-23 127.6 13.4 110 53-167 16-137 (141)
42 cd04671 Nudix_Hydrolase_13 Mem 99.8 1.7E-18 3.6E-23 126.5 10.6 93 53-156 13-111 (123)
43 cd04682 Nudix_Hydrolase_23 Mem 99.8 2.6E-18 5.7E-23 124.9 11.0 96 53-156 13-115 (122)
44 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 4.9E-18 1.1E-22 125.7 12.5 100 53-160 15-120 (137)
45 cd03426 CoAse Coenzyme A pyrop 99.8 2.3E-18 5E-23 130.8 10.9 98 50-155 14-118 (157)
46 cd04691 Nudix_Hydrolase_32 Mem 99.8 5.3E-18 1.1E-22 122.6 12.2 93 53-156 12-109 (117)
47 PRK00714 RNA pyrophosphohydrol 99.8 1.2E-17 2.7E-22 126.7 14.7 136 17-174 5-152 (156)
48 PRK00241 nudC NADH pyrophospha 99.8 6.8E-18 1.5E-22 137.6 13.2 109 52-171 143-254 (256)
49 cd04661 MRP_L46 Mitochondrial 99.8 1.8E-17 3.8E-22 122.4 12.3 105 51-157 12-122 (132)
50 cd04697 Nudix_Hydrolase_38 Mem 99.7 2.1E-17 4.6E-22 120.9 11.5 98 53-159 13-116 (126)
51 PRK15393 NUDIX hydrolase YfcD; 99.7 3.6E-17 7.7E-22 127.0 13.3 115 52-176 49-171 (180)
52 cd04693 Nudix_Hydrolase_34 Mem 99.7 2.4E-17 5.3E-22 120.6 9.6 96 53-158 13-116 (127)
53 PRK05379 bifunctional nicotina 99.7 7.9E-17 1.7E-21 136.5 14.1 111 53-170 215-338 (340)
54 PRK10776 nucleoside triphospha 99.7 1.9E-16 4.1E-21 115.4 13.8 105 53-167 17-125 (129)
55 cd02885 IPP_Isomerase Isopente 99.7 4.9E-17 1.1E-21 124.5 11.0 118 17-158 26-151 (165)
56 cd04665 Nudix_Hydrolase_8 Memb 99.7 1.2E-16 2.6E-21 115.8 12.0 91 53-152 12-102 (118)
57 PRK11762 nudE adenosine nucleo 99.7 3.9E-16 8.5E-21 121.6 15.8 101 53-161 60-165 (185)
58 cd04662 Nudix_Hydrolase_5 Memb 99.7 1.3E-16 2.8E-21 116.2 12.1 57 22-95 2-65 (126)
59 cd04692 Nudix_Hydrolase_33 Mem 99.7 1.1E-16 2.4E-21 119.7 11.5 104 50-156 15-128 (144)
60 PRK10729 nudF ADP-ribose pyrop 99.7 6E-16 1.3E-20 122.1 14.3 103 52-162 62-178 (202)
61 cd04699 Nudix_Hydrolase_39 Mem 99.7 4.5E-16 9.7E-21 113.5 12.2 96 53-155 14-114 (129)
62 cd03425 MutT_pyrophosphohydrol 99.7 8.8E-16 1.9E-20 110.7 13.4 106 52-167 13-122 (124)
63 TIGR00052 nudix-type nucleosid 99.7 4E-16 8.6E-21 121.6 12.1 104 52-163 57-173 (185)
64 cd04694 Nudix_Hydrolase_35 Mem 99.7 8.2E-16 1.8E-20 115.1 12.8 104 53-157 14-133 (143)
65 cd02883 Nudix_Hydrolase Nudix 99.7 5.8E-16 1.3E-20 110.8 10.8 98 53-156 13-113 (123)
66 TIGR00586 mutt mutator mutT pr 99.7 2E-15 4.3E-20 110.1 13.5 105 53-167 17-125 (128)
67 TIGR02705 nudix_YtkD nucleosid 99.7 7.3E-15 1.6E-19 111.0 16.0 92 53-156 36-128 (156)
68 cd04685 Nudix_Hydrolase_26 Mem 99.6 2.4E-15 5.3E-20 111.2 11.3 99 53-155 13-123 (133)
69 PRK03759 isopentenyl-diphospha 99.6 3E-15 6.6E-20 116.5 12.2 116 18-157 32-154 (184)
70 TIGR02150 IPP_isom_1 isopenten 99.6 3E-15 6.4E-20 113.9 11.6 114 17-158 24-145 (158)
71 PRK15009 GDP-mannose pyrophosp 99.6 7.2E-15 1.6E-19 115.0 13.5 103 52-163 58-174 (191)
72 PRK10707 putative NUDIX hydrol 99.6 6.7E-15 1.5E-19 115.1 13.0 112 19-156 29-147 (190)
73 cd03676 Nudix_hydrolase_3 Memb 99.6 9E-15 2E-19 113.4 12.7 126 17-161 29-164 (180)
74 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 9.4E-15 2E-19 113.4 12.6 114 50-167 47-181 (186)
75 cd04663 Nudix_Hydrolase_6 Memb 99.6 4.3E-14 9.4E-19 103.2 10.3 44 51-95 13-56 (126)
76 cd04674 Nudix_Hydrolase_16 Mem 99.6 1.2E-13 2.6E-18 99.9 12.4 43 54-96 17-62 (118)
77 PRK08999 hypothetical protein; 99.5 1.1E-13 2.5E-18 115.9 13.7 105 53-167 18-126 (312)
78 COG2816 NPY1 NTP pyrophosphohy 99.5 1.6E-14 3.5E-19 117.1 6.4 94 53-156 156-251 (279)
79 PLN02709 nudix hydrolase 99.5 3.9E-13 8.4E-18 106.7 10.9 97 50-154 49-154 (222)
80 PLN03143 nudix hydrolase; Prov 99.4 5.1E-12 1.1E-16 104.3 15.6 102 51-159 142-269 (291)
81 COG0494 MutT NTP pyrophosphohy 99.4 7.3E-12 1.6E-16 91.8 12.8 104 52-158 24-137 (161)
82 PLN02552 isopentenyl-diphospha 99.4 4E-11 8.7E-16 97.0 15.0 133 17-170 53-224 (247)
83 KOG3084 NADH pyrophosphatase I 99.3 2.8E-13 6.1E-18 110.5 1.6 96 53-156 201-299 (345)
84 COG4119 Predicted NTP pyrophos 99.3 2.1E-11 4.5E-16 87.3 9.2 60 19-95 2-68 (161)
85 PLN02791 Nudix hydrolase homol 99.3 9.1E-11 2E-15 107.7 13.4 103 52-156 45-159 (770)
86 KOG3041 Nucleoside diphosphate 99.1 2.6E-09 5.7E-14 82.1 12.2 101 49-156 85-195 (225)
87 cd03431 DNA_Glycosylase_C DNA 99.0 1.4E-08 3E-13 72.4 12.9 98 53-166 15-116 (118)
88 KOG3069 Peroxisomal NUDIX hydr 98.9 3.2E-09 6.9E-14 83.8 7.2 115 19-154 41-162 (246)
89 KOG0648 Predicted NUDIX hydrol 98.7 1.4E-08 3.1E-13 83.1 5.4 120 52-179 127-257 (295)
90 COG1443 Idi Isopentenyldiphosp 98.6 1.3E-07 2.9E-12 71.5 7.6 102 53-158 46-156 (185)
91 PLN02839 nudix hydrolase 98.5 3E-06 6.5E-11 71.8 13.6 104 50-157 216-329 (372)
92 PF14815 NUDIX_4: NUDIX domain 98.3 9E-06 1.9E-10 58.1 10.3 100 52-164 9-112 (114)
93 KOG4195 Transient receptor pot 98.0 3.8E-05 8.3E-10 60.4 7.5 39 52-90 139-177 (275)
94 KOG2937 Decapping enzyme compl 97.6 1.4E-05 3E-10 66.3 0.7 94 51-153 94-190 (348)
95 PF13869 NUDIX_2: Nucleotide h 97.4 0.0012 2.6E-08 51.2 8.9 70 17-104 40-115 (188)
96 COG4112 Predicted phosphoester 97.0 0.009 2E-07 45.0 9.4 97 53-155 73-187 (203)
97 KOG4432 Uncharacterized NUDIX 97.0 0.0027 5.8E-08 52.3 7.1 79 66-150 82-160 (405)
98 KOG0142 Isopentenyl pyrophosph 96.7 0.012 2.7E-07 45.9 8.4 86 77-167 104-201 (225)
99 KOG4548 Mitochondrial ribosoma 96.4 0.033 7.1E-07 44.9 9.2 103 52-157 139-249 (263)
100 PRK10880 adenine DNA glycosyla 95.7 0.13 2.7E-06 44.1 10.1 97 53-167 243-343 (350)
101 KOG1689 mRNA cleavage factor I 95.7 0.014 3E-07 44.3 3.8 40 51-91 83-122 (221)
102 KOG4313 Thiamine pyrophosphoki 95.2 0.1 2.2E-06 42.2 7.3 105 49-156 145-259 (306)
103 KOG4432 Uncharacterized NUDIX 95.1 0.06 1.3E-06 44.6 5.8 88 65-160 286-381 (405)
104 PF14443 DBC1: DBC1 91.2 1.1 2.4E-05 32.6 6.4 47 51-97 7-61 (126)
105 PRK13910 DNA glycosylase MutY; 88.1 7.9 0.00017 32.3 10.2 25 143-167 256-280 (289)
106 COG4111 Uncharacterized conser 86.1 5.2 0.00011 32.7 7.7 57 49-109 34-91 (322)
107 PF07026 DUF1317: Protein of u 76.7 5.3 0.00012 24.9 3.6 33 53-88 12-44 (60)
108 PF03487 IL13: Interleukin-13; 62.0 7.9 0.00017 22.2 1.9 23 68-90 14-36 (43)
109 COG1194 MutY A/G-specific DNA 44.2 66 0.0014 27.6 5.6 86 53-166 248-338 (342)
110 TIGR01084 mutY A/G-specific ad 41.0 74 0.0016 26.3 5.4 17 53-69 240-260 (275)
111 KOG2937 Decapping enzyme compl 36.1 11 0.00023 32.0 -0.3 34 62-95 263-296 (348)
112 PF09505 Dimeth_Pyl: Dimethyla 29.3 32 0.0007 29.3 1.5 26 69-94 406-431 (466)
113 PF13014 KH_3: KH domain 23.6 76 0.0016 17.8 2.0 17 82-98 12-28 (43)
114 PHA02754 hypothetical protein; 20.6 1.1E+02 0.0023 19.2 2.2 28 148-176 3-30 (67)
No 1
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.91 E-value=3.1e-23 Score=151.92 Aligned_cols=129 Identities=27% Similarity=0.328 Sum_probs=101.3
Q ss_pred eEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeecee
Q 029131 20 RLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEF 99 (198)
Q Consensus 20 r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~ 99 (198)
+.++++|+++.+ ++..+|||+++.+.+.|.||||++++||++.+||.||++||||+.+.....
T Consensus 1 ~~~a~~ii~~~~-----------------~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~ 63 (131)
T cd03673 1 VLAAGGVVFRGS-----------------DGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP 63 (131)
T ss_pred CeeEEEEEEEcc-----------------CCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce
Confidence 467899999886 345699999998888899999999999999999999999999999998888
Q ss_pred eEEEEeccCCccCCCCCCceEEEEEEEEEecccccC-CCCCcccceEEEehhHHHHhcCChHHHHHHHHHHH
Q 029131 100 LGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELES-WPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFL 170 (198)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~ 170 (198)
++.+.+..+.... ......++|.+........ .++.|+.+++|++++++.+++.++..+.++.. ++
T Consensus 64 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~-~~ 130 (131)
T cd03673 64 LGTIRYWFSSSGK----RVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRA-AL 130 (131)
T ss_pred EEEEEEeccCCCC----CcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHH-hh
Confidence 8877665543211 1233566666665433222 24567888999999999999999999999988 54
No 2
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.91 E-value=4.1e-23 Score=150.69 Aligned_cols=120 Identities=41% Similarity=0.686 Sum_probs=95.4
Q ss_pred EEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeec-ee
Q 029131 21 LVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLK-EF 99 (198)
Q Consensus 21 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~-~~ 99 (198)
+++|+|+|+.+ ++..+|||+++...+.|.||||++++|||+.+||+||++||||+.+... .+
T Consensus 1 ~~~g~v~~~~~-----------------~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~ 63 (122)
T cd04666 1 LQAGAIPYRET-----------------GGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP 63 (122)
T ss_pred CEEEEEEEEEc-----------------CCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE
Confidence 36899999876 3456899999887788999999999999999999999999999998887 89
Q ss_pred eEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcCChHH
Q 029131 100 LGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWM 161 (198)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~ 161 (198)
++.+.+..+... .......++|.+.+.......++.+..+++|++++++.+++.++..
T Consensus 64 l~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 64 LGRFEYRKRSKN----RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred EEEEEeeecCCC----CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 998887665421 1124456777777665444445556778999999999999988764
No 3
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.90 E-value=4.8e-23 Score=150.18 Aligned_cols=139 Identities=51% Similarity=0.923 Sum_probs=115.6
Q ss_pred cccc-CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC-CCCEEecceecCCCCCHHHHHHHHHHHHh
Q 029131 13 QRYE-AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS-GPGLLFPKGGWENDETVEEAALREALEEA 90 (198)
Q Consensus 13 ~~~~-~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEs~~eaa~REl~EEt 90 (198)
|+|+ .++|.++|||||+.+. ...+|||+...+ ...|.+|+|++|++|+..+||+||++||.
T Consensus 1 qry~~~G~r~vagCi~~r~~~-----------------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEA 63 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSDK-----------------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEA 63 (145)
T ss_pred CccCCCCcEEEEEeeeeeecC-----------------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 5788 8999999999999982 357999999888 56799999999999999999999999999
Q ss_pred CceeeeceeeEEEE-eccCCccCCCCCCceEEEEEEEEEecccccCCCCCc--ccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 91 GVRGHLKEFLGYYD-FKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQS--TRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 91 Gl~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
|+.....+.++.+. +.+.... ..+..++|.+.+......+|+.+ +.+.+|+.++|+.+...+..+..++..
T Consensus 64 Gv~G~l~~~~~g~~~~~~~~~~------~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e 137 (145)
T KOG2839|consen 64 GVKGKLGRLLGGFEDFLSKKHR------TKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEE 137 (145)
T ss_pred CceeeeeccccchhhccChhhc------ccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHH
Confidence 99999888555543 4444332 23467889888888777777765 778899999999999999999999999
Q ss_pred HHHHHHhh
Q 029131 168 GFLKLYAD 175 (198)
Q Consensus 168 ~~~~~l~~ 175 (198)
+++.+.+
T Consensus 138 -~~~~l~~ 144 (145)
T KOG2839|consen 138 -FLQFLCS 144 (145)
T ss_pred -HHHHhcC
Confidence 8887653
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.88 E-value=8.7e-22 Score=144.46 Aligned_cols=126 Identities=23% Similarity=0.261 Sum_probs=94.7
Q ss_pred eEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeecee
Q 029131 20 RLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEF 99 (198)
Q Consensus 20 r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~ 99 (198)
+.++|+|+|..+ +++.++||+++++ +.|.+|||++++|||+.+||+||++||||+.+.....
T Consensus 2 ~~~~g~vi~~~~-----------------~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~ 63 (130)
T cd03428 2 ERSAGAIIYRRL-----------------NNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI 63 (130)
T ss_pred ceEEEEEEEEec-----------------CCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh
Confidence 467899999887 4567899999887 8899999999999999999999999999999887766
Q ss_pred eEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 100 LGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
++.+........ .......++|.+.+.........+|..+++|++++++.+++..+.++++++.
T Consensus 64 ~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 127 (130)
T cd03428 64 VLGFKETLNYQV----RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDK 127 (130)
T ss_pred hccceeEEEccc----cCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHH
Confidence 533221111110 0123356667777653322233367888999999999999989999888876
No 5
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.87 E-value=4.1e-21 Score=140.12 Aligned_cols=111 Identities=26% Similarity=0.345 Sum_probs=84.4
Q ss_pred EEEEEEecCC---CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 53 EVLMINSTSG---PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 53 ~vLLv~r~~~---~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
+|||+++.+. +.|.+|||++++||++.+||+||++||||+++....+++.+.+......... ..+...++|.+..
T Consensus 12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~ 89 (128)
T cd04684 12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDY--DAHHLCVFYDARV 89 (128)
T ss_pred EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCe--eccEEEEEEEEEE
Confidence 8999998874 6799999999999999999999999999999988888887665443321110 1233566777765
Q ss_pred ccccc--CCCCCcccceEEEehhHHHHhcCChHHHHHH
Q 029131 130 KEELE--SWPEQSTRQRSWLTVPEAIECCRHPWMQEAL 165 (198)
Q Consensus 130 ~~~~~--~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l 165 (198)
..... ..+.++..+++|++++++.+....|.+.+++
T Consensus 90 ~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 90 VGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred ecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 54332 3345577889999999999888888877665
No 6
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.87 E-value=3.1e-21 Score=145.01 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=92.4
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC-CCEEecceecCCCCCHHHHHHHHHHHHhCcee--e
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG-PGLLFPKGGWENDETVEEAALREALEEAGVRG--H 95 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~--~ 95 (198)
.+.+|++++++.+ .+|||++|... +.|.+|||++|+|||+.+||+||++||||+++ .
T Consensus 6 ~~~~v~~vi~~~~--------------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~ 65 (148)
T PRK09438 6 RPVSVLVVIYTPD--------------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAE 65 (148)
T ss_pred CceEEEEEEEeCC--------------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCcccc
Confidence 4667888888664 26899887653 56999999999999999999999999999988 3
Q ss_pred eceeeEE-----EEeccCCccCCCCC-CceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHHHH
Q 029131 96 LKEFLGY-----YDFKSKTLQDEFSP-EGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGF 169 (198)
Q Consensus 96 ~~~~l~~-----~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 169 (198)
....+.. +.+... ....+.+ ..+...++|.+......... .+|+.+++|++++++.++...|..+.++.. +
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~-~ 142 (148)
T PRK09438 66 QLTLIDCQRSIEYEIFPH-WRHRYAPGVTRNTEHWFCLALPHERPVV-LTEHLAYQWLDAREAAALTKSWSNAEAIEQ-L 142 (148)
T ss_pred ceeecccccccccccchh-hhhccccccCCceeEEEEEecCCCCccc-cCcccceeeCCHHHHHHHhcChhHHHHHHH-H
Confidence 3232221 111100 0000000 11235667777654432222 348889999999999999999999999999 9
Q ss_pred HHHHh
Q 029131 170 LKLYA 174 (198)
Q Consensus 170 ~~~l~ 174 (198)
.+|++
T Consensus 143 ~~~~~ 147 (148)
T PRK09438 143 VIRLA 147 (148)
T ss_pred HHHhc
Confidence 88875
No 7
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=4.9e-21 Score=141.11 Aligned_cols=125 Identities=22% Similarity=0.233 Sum_probs=89.2
Q ss_pred eeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceee
Q 029131 23 AGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFL 100 (198)
Q Consensus 23 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l 100 (198)
+|+|+++.. ++..++||++|.. .+.|.+|||++++|||+.+||+||++||||+++......
T Consensus 2 ~~~v~~~~~-----------------~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~ 64 (131)
T cd04695 2 VSGVLLRSL-----------------DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNA 64 (131)
T ss_pred ceEEEEEEc-----------------CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccc
Confidence 677887775 2456899999887 678999999999999999999999999999988654322
Q ss_pred EEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHHHHH
Q 029131 101 GYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFL 170 (198)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~ 170 (198)
..+........ .......+|.+.........+++|+.+++|++++++.+++..+..+.++.. ..
T Consensus 65 ~~~~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~-~~ 128 (131)
T cd04695 65 DYLEQFYEAND-----NRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDH-VW 128 (131)
T ss_pred cceeeEeecCC-----ceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHH-HH
Confidence 21111111111 112344556665543333334568889999999999999999998888876 44
No 8
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.86 E-value=2.4e-20 Score=138.74 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=87.4
Q ss_pred eEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeecee
Q 029131 20 RLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEF 99 (198)
Q Consensus 20 r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~ 99 (198)
+..+++++++.+ ..+|||++++..+.|.+|||++++||++++||.||++||||+++.....
T Consensus 2 ~~~~~~~v~~~~-------------------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 62 (138)
T cd03674 2 HFTASAFVVNPD-------------------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62 (138)
T ss_pred cEEEEEEEEeCC-------------------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence 356777777653 2489999988878899999999999999999999999999998765544
Q ss_pred eE------EEEeccCCccCCCCCCceEEEEEEEEEecccccC-CCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 100 LG------YYDFKSKTLQDEFSPEGLCKAAMFALLVKEELES-WPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 100 l~------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
.+ .+......... .+...+...+|.+........ .+.+|..+++|++++++..+...+..+.++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~ 135 (138)
T cd03674 63 LSVLVDLDVHPIDGHPKRG--VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEK 135 (138)
T ss_pred ccccccceeEeecCCCCCC--CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHH
Confidence 32 11111111100 011223345566664432222 24568889999999999887667888888776
No 9
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.85 E-value=2.9e-20 Score=139.36 Aligned_cols=125 Identities=19% Similarity=0.138 Sum_probs=87.4
Q ss_pred ceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCcee
Q 029131 18 GCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRG 94 (198)
Q Consensus 18 ~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~ 94 (198)
-++.++++++++.+ .+|||++|.+ .+.|.||||+++.|||+.+||+||++||||+++
T Consensus 10 ~p~v~v~~vI~~~~--------------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v 69 (144)
T cd03430 10 TPLVSIDLIVENED--------------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEF 69 (144)
T ss_pred CCeEEEEEEEEeCC--------------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCc
Confidence 35678888888664 2799999864 456999999999999999999999999999998
Q ss_pred eec--eeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHh-cCChHHH
Q 029131 95 HLK--EFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIEC-CRHPWMQ 162 (198)
Q Consensus 95 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~-~~~~~~~ 162 (198)
... ++++.+.+.............+....+|.+.........+++++.+++|++++++.+. ..+|..+
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 140 (144)
T cd03430 70 LISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNTK 140 (144)
T ss_pred ccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHHH
Confidence 877 7777765433321100011123445556665544333345668889999999999875 2344443
No 10
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.9e-20 Score=135.01 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=83.6
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceee
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGH 95 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~ 95 (198)
+|..+++++++.+ .+|||++|.+ .+.|.+|||++++||++.+||+||++||||+++.
T Consensus 1 ~~~~~~~~i~~~~--------------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~ 60 (125)
T cd04679 1 PRVGCGAAILRDD--------------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIH 60 (125)
T ss_pred CceEEEEEEECCC--------------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcc
Confidence 4778899888764 2799998764 3579999999999999999999999999999998
Q ss_pred eceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccccc-CCCCCcccceEEEehhHHHHhc
Q 029131 96 LKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELE-SWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
...+++.+.+..... ..+....+|.+....... ...++|+.+++|++++++.+.+
T Consensus 61 ~~~~~~~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 61 STRLLCVVDHIIEEP------PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred cceEEEEEeecccCC------CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchh
Confidence 888888766544331 123345566666443222 2234578899999999998744
No 11
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.84 E-value=4.5e-20 Score=137.95 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=86.6
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC---CCEEecceecCCCCCHHHHHHHHHHHHhCceee
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG---PGLLFPKGGWENDETVEEAALREALEEAGVRGH 95 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~ 95 (198)
+..++++++++.+ .++||++++.. +.|+||||++++||++++||.||++||||+++.
T Consensus 12 ~~~av~~vv~~~~--------------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~ 71 (142)
T cd04700 12 EARAAGAVILNER--------------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVR 71 (142)
T ss_pred eeeeEEEEEEeCC--------------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceee
Confidence 4577888888654 26888887643 469999999999999999999999999999998
Q ss_pred eceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc-ccCCCCCcccceEEEehhHHHHhcCChHHH
Q 029131 96 LKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE-LESWPEQSTRQRSWLTVPEAIECCRHPWMQ 162 (198)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~ 162 (198)
...+++.+.+..... .....++|.+..... ......+|+.+++|++++++.+++..+.+.
T Consensus 72 ~~~~~~~~~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 72 PVKFLGTYLGRFDDG-------VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred ccEEEEEEEEEcCCC-------cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 888888765443321 123456676665432 222234688899999999999988666554
No 12
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.3e-20 Score=134.05 Aligned_cols=104 Identities=29% Similarity=0.414 Sum_probs=79.5
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceee-eceeeEEEEeccCCccCCCCCCceEEEEEEEEEecc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGH-LKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKE 131 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 131 (198)
++||+++...+.|.+|||++++|||+++||.||++||||+.+. ....++.+.+..... ....++|.+....
T Consensus 13 ~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~--------~~~~~~f~~~~~~ 84 (120)
T cd04680 13 RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGS--------WDHVIVFRARADT 84 (120)
T ss_pred eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCC--------ceEEEEEEecccC
Confidence 7999998877799999999999999999999999999999998 778888876654322 2356677766554
Q ss_pred cccCCCCCcccceEEEehhHHHHhcCChHHHHHH
Q 029131 132 ELESWPEQSTRQRSWLTVPEAIECCRHPWMQEAL 165 (198)
Q Consensus 132 ~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l 165 (198)
.....+++|..+++|++++++.+.+. +..++.+
T Consensus 85 ~~~~~~~~E~~~~~w~~~~~l~~~~~-~~~~~~~ 117 (120)
T cd04680 85 QPVIRPSHEISEARFFPPDALPEPTT-PATRRRI 117 (120)
T ss_pred CCccCCcccEEEEEEECHHHCcccCC-hHHHHHh
Confidence 33234556788899999999988554 3333333
No 13
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.84 E-value=1.7e-19 Score=133.10 Aligned_cols=111 Identities=26% Similarity=0.392 Sum_probs=82.8
Q ss_pred EEEEEEecCC--CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEec
Q 029131 53 EVLMINSTSG--PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVK 130 (198)
Q Consensus 53 ~vLLv~r~~~--~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 130 (198)
++||++|.+. +.|.+|||++++||++.+||.||++||||+++.....++.+.+...... .....++|.+.+.
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~------~~~~~~~f~~~~~ 85 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSD------TTYLRFAFAAELL 85 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCC------eeEEEEEEEEEEC
Confidence 7999988754 3699999999999999999999999999999988788777765544311 2334556766665
Q ss_pred ccccC-CCCCcccceEEEehhHHHHhc---CChHHHHHHHHHHH
Q 029131 131 EELES-WPEQSTRQRSWLTVPEAIECC---RHPWMQEALEKGFL 170 (198)
Q Consensus 131 ~~~~~-~~~~e~~~~~W~~~~e~~~~~---~~~~~~~~l~~~~~ 170 (198)
..... ..++++.++.|++++++.++. ..+.+.+.+.. ++
T Consensus 86 ~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~-~l 128 (134)
T cd03675 86 EHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIED-YL 128 (134)
T ss_pred CCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHH-HH
Confidence 43322 234578889999999999875 46666676666 44
No 14
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.84 E-value=1.5e-19 Score=137.50 Aligned_cols=120 Identities=23% Similarity=0.195 Sum_probs=82.2
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCce
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVR 93 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~ 93 (198)
..+..++++++.+.. .+|||+||.. .+.|.||||++++|||+++||+||++||||+.
T Consensus 14 ~~~~~~v~~vI~~~~--------------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~ 73 (159)
T PRK15434 14 STPLISLDFIVENSR--------------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLR 73 (159)
T ss_pred CCceEEEEEEEECCC--------------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCc
Confidence 345667777776543 3899999875 35799999999999999999999999999998
Q ss_pred eee--ceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhc
Q 029131 94 GHL--KEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 94 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
+.. .++++.+.+........-....+...++|.+..........+.|+.+++|++++++.+..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 74 LPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred cccccceEEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhcc
Confidence 753 366666554332210000001234556676665543333344578899999999998864
No 15
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.83 E-value=7.4e-20 Score=137.31 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=85.3
Q ss_pred EeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeE
Q 029131 22 VAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLG 101 (198)
Q Consensus 22 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~ 101 (198)
++|+|+++.+ ..+|||+++...+.|+||||++++|||+.+||.||++||||+.+.......
T Consensus 3 ~~gaii~~~~-------------------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~ 63 (145)
T cd03672 3 VYGAIILNED-------------------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKD 63 (145)
T ss_pred eeEEEEEeCC-------------------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccc
Confidence 5788888764 237999998777799999999999999999999999999999877532212
Q ss_pred EEEeccCCccCCCCCCceEEEEEEEEE-eccccc--CCCCCcccceEEEehhHHHHhcCC----------hHHHHHHHHH
Q 029131 102 YYDFKSKTLQDEFSPEGLCKAAMFALL-VKEELE--SWPEQSTRQRSWLTVPEAIECCRH----------PWMQEALEKG 168 (198)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~--~~~~~e~~~~~W~~~~e~~~~~~~----------~~~~~~l~~~ 168 (198)
.+. ..... .....+|.+. ...... ..+.+|+.+++|++++++.++... ..+...+..
T Consensus 64 ~~~--~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~- 133 (145)
T cd03672 64 DYI--ELIIR-------GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKP- 133 (145)
T ss_pred eee--ecccC-------CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHH-
Confidence 221 11110 1123444443 222221 223467889999999999987532 223556666
Q ss_pred HHHHHhhcc
Q 029131 169 FLKLYADHM 177 (198)
Q Consensus 169 ~~~~l~~~~ 177 (198)
+++|+.+++
T Consensus 134 ~~~~~~~~~ 142 (145)
T cd03672 134 LKKWINRQK 142 (145)
T ss_pred HHHHHHHhh
Confidence 777776654
No 16
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=9.9e-20 Score=133.46 Aligned_cols=119 Identities=25% Similarity=0.307 Sum_probs=82.3
Q ss_pred eEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC--CCEEecceecCCCCCHHHHHHHHHHHHhCceeeec
Q 029131 20 RLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG--PGLLFPKGGWENDETVEEAALREALEEAGVRGHLK 97 (198)
Q Consensus 20 r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~ 97 (198)
|.+|++|+++.+ +|||+++.+. +.|.+|||++++||++++||.||++||||+++...
T Consensus 1 r~~a~~iv~~~~---------------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~ 59 (128)
T cd04687 1 RNSAKAVIIKND---------------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG 59 (128)
T ss_pred CcEEEEEEEECC---------------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC
Confidence 567888888644 7999988653 45999999999999999999999999999999877
Q ss_pred eeeEEEEeccCCccCCCCCCceEEEEEEEEEeccccc----CCCCCcccceEEEehhHHHHhcCCh
Q 029131 98 EFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELE----SWPEQSTRQRSWLTVPEAIECCRHP 159 (198)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~e~~~~~~~~ 159 (198)
+.+..+.+.............+...++|.+....... ..++.+..+++|++++++.++..+|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 60 PLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred cEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 7666655543220000001123355667666543221 1233455689999999998876555
No 17
>PLN02325 nudix hydrolase
Probab=99.83 E-value=1.1e-19 Score=136.32 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=85.8
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCce
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVR 93 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~ 93 (198)
...+.++++++++.+ +|||++|.+ .+.|.+|||+++.||++.+||+||++||||++
T Consensus 6 ~~p~~~v~~vi~~~~---------------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~ 64 (144)
T PLN02325 6 PIPRVAVVVFLLKGN---------------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLE 64 (144)
T ss_pred CCCeEEEEEEEEcCC---------------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCC
Confidence 345777777776543 799999876 35799999999999999999999999999999
Q ss_pred eeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccc---cCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 94 GHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEEL---ESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
+...++++.+.+....... ..+...++|.+...... .....++..+++|+++++++..+..| .+.++..
T Consensus 65 v~~~~~l~~~~~~~~~~~~----~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p-~~~~~~~ 136 (144)
T PLN02325 65 IEKIELLTVTNNVFLEEPK----PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP-LEKLVGS 136 (144)
T ss_pred CcceEEEEEecceeecCCC----CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH-HHHHHHc
Confidence 9988888886554332211 12334555555543322 11223456778999999998754333 3344443
No 18
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.83 E-value=2.1e-19 Score=131.55 Aligned_cols=124 Identities=24% Similarity=0.279 Sum_probs=95.1
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC-----CCEEecceecCCCCCHHHHHHHHHHHHhCce
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG-----PGLLFPKGGWENDETVEEAALREALEEAGVR 93 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~ 93 (198)
+|.+|++++++.+ + +|||+++.+. +.|.+|||++++||++.+||+||+.||||+.
T Consensus 1 ~~~~v~~ii~~~~-------------------~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~ 60 (134)
T PF00293_consen 1 WRRAVGVIIFNED-------------------G-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLD 60 (134)
T ss_dssp EEEEEEEEEEETT-------------------T-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEE
T ss_pred CCCEEEEEEEeCC-------------------c-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccce
Confidence 4788999999876 2 8999999876 4699999999999999999999999999999
Q ss_pred eeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccc--cCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 94 GHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEEL--ESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
+.....++.+.+....... .....++|.+...... ......|..++.|++++++.++..++....++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~ 131 (134)
T PF00293_consen 61 VSPLELLGLFSYPSPSGDP-----EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPW 131 (134)
T ss_dssp EEEEEEEEEEEEEETTTES-----SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHH
T ss_pred ecccccceeeeecccCCCc-----ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcc
Confidence 9777777776666655421 1235556666544332 2222348889999999999999888877777666
No 19
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.9e-19 Score=131.41 Aligned_cols=109 Identities=22% Similarity=0.178 Sum_probs=76.7
Q ss_pred EEEEEEecC-CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecc
Q 029131 53 EVLMINSTS-GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKE 131 (198)
Q Consensus 53 ~vLLv~r~~-~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 131 (198)
+|||+++.. .+.|.+|||++++|||+.+||.||++||||+++.....+....+...... ....+...+.|.+....
T Consensus 15 ~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 91 (125)
T cd04696 15 RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEF---HKPAHFVLFDFFARTDG 91 (125)
T ss_pred CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCC---CCccEEEEEEEEEEecC
Confidence 688888654 46799999999999999999999999999999887776665443322110 01123344555555443
Q ss_pred cccCCCCCcccceEEEehhHHHHhcCChHHHHHH
Q 029131 132 ELESWPEQSTRQRSWLTVPEAIECCRHPWMQEAL 165 (198)
Q Consensus 132 ~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l 165 (198)
. .....+++.+++|++++++.++...+....++
T Consensus 92 ~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~ 124 (125)
T cd04696 92 T-EVTPNEEIVEWEWVTPEEALDYPLNSFTRLLL 124 (125)
T ss_pred C-cccCCcccceeEEECHHHHhcCCCCHHHHHHh
Confidence 2 23345678889999999999886666655543
No 20
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.83 E-value=1.6e-19 Score=132.44 Aligned_cols=109 Identities=20% Similarity=0.124 Sum_probs=80.6
Q ss_pred cEEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEe---ccCCccCCCCCCceEEEEEEE
Q 029131 52 VEVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDF---KSKTLQDEFSPEGLCKAAMFA 126 (198)
Q Consensus 52 ~~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~f~ 126 (198)
.+|||++|.+ .+.|.+|||+++.||++.+||.||++||||+.+.....+..+.. ..... .......++|.
T Consensus 15 ~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~f~ 89 (129)
T cd04664 15 GRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD-----NGRVWTEHPFA 89 (129)
T ss_pred CEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCC-----CceEEEEeEEE
Confidence 4899999887 56799999999999999999999999999998866666555431 11111 01234567777
Q ss_pred EEecccccCCCCCcccceEEEehhHHHHhcCChHHHHHH
Q 029131 127 LLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEAL 165 (198)
Q Consensus 127 ~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l 165 (198)
+.+........++|+.++.|++++++.+++.++..+.++
T Consensus 90 ~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 90 FHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred EEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 775543322344678899999999999998888877664
No 21
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.8e-19 Score=130.44 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=76.3
Q ss_pred EEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 53 EVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 53 ~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
++||+++.+ .+.|.||||++++||++++||.||++||||+++.....++.+.+........ .......++|.+..
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGR--VEFHYVLIDFLCRY 89 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCc--cceEEEEEEEEEEe
Confidence 789998875 3469999999999999999999999999999998888888766554332110 01223445555554
Q ss_pred cccccCCCCCcccceEEEehhHHHHhcCChH
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAIECCRHPW 160 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~ 160 (198)
.... ..+..|+.+++|++++++.++...+.
T Consensus 90 ~~~~-~~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 90 LGGE-PVAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred CCCc-ccCCcccceeEEECHHHHhhCcCCcc
Confidence 4322 23456788899999999998765554
No 22
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.8e-19 Score=130.16 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=77.9
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEecc---CCccCCCCCCceEEEEEEEEEe
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKS---KTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
++||++|...+.|.||||+++.||++++||.||++||||+++...+.++.+.... ...... ......++|.+..
T Consensus 15 ~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 91 (129)
T cd04676 15 RVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD---VRQYLDITFRCRV 91 (129)
T ss_pred eEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC---cEEEEEEEEEEEe
Confidence 7999999888889999999999999999999999999999987776655432211 111000 0122344455444
Q ss_pred cccccCCCCCcccceEEEehhHHHHhcCChHHHHHHH
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALE 166 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~ 166 (198)
.......+..+..+++|++++++.++...+.++.+++
T Consensus 92 ~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 92 VGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred eCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 3322223455777899999999999877777776653
No 23
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.9e-19 Score=132.26 Aligned_cols=104 Identities=23% Similarity=0.231 Sum_probs=71.2
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE-ecc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL-VKE 131 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ 131 (198)
++||++|.+.+.|.||||++++||++.+||.||++||||+++.....++.+.......... .........+|.+. ...
T Consensus 20 ~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 98 (132)
T cd04677 20 EVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN-GDDEQYIVTLYYVTKVFG 98 (132)
T ss_pred CEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC-CCcEEEEEEEEEEEeccC
Confidence 7899998877789999999999999999999999999999998887776543211110000 00112233334433 332
Q ss_pred cccCCCCCcccceEEEehhHHHHhcC
Q 029131 132 ELESWPEQSTRQRSWLTVPEAIECCR 157 (198)
Q Consensus 132 ~~~~~~~~e~~~~~W~~~~e~~~~~~ 157 (198)
.....+.+|..+++|++++++.+++.
T Consensus 99 ~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 99 GKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred CcccCCCCceeeEEEEChhHCccchh
Confidence 22233556788899999999988653
No 24
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.82 E-value=2.2e-19 Score=132.87 Aligned_cols=110 Identities=25% Similarity=0.219 Sum_probs=84.1
Q ss_pred EEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 53 EVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 53 ~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
++||++|.. .+.|.+|||+++.||++.+||+||++||||+.+...+.++.+.+..... ......++|.+..
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~------~~~~~~~~f~~~~ 86 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGE------EERYGVFVFLATE 86 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCC------CcEEEEEEEEECC
Confidence 799999876 4569999999999999999999999999999999888888877655431 1133455565543
Q ss_pred cccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHHHHH
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFL 170 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~ 170 (198)
..... ....+...++|++++++.++...+..+..+.. ++
T Consensus 87 ~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~-~~ 125 (137)
T cd03427 87 FEGEP-LKESEEGILDWFDIDDLPLLPMWPGDREWLPL-ML 125 (137)
T ss_pred ccccc-CCCCccccceEEcHhhcccccCCCCcHHHHHH-Hh
Confidence 32222 22445567899999999988778888888877 65
No 25
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.9e-19 Score=132.02 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=78.9
Q ss_pred EEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 53 EVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 53 ~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
++||++|.. .+.|.+|||+++.||++.+||.||++||||+++.....++.+....+..+. ......++|.+.+
T Consensus 14 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 89 (130)
T cd04681 14 ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGM----EYDTLDLFFVCQV 89 (130)
T ss_pred cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCc----eeEEEEEEEEEEe
Confidence 789998865 357999999999999999999999999999998877777765433222110 0112233555555
Q ss_pred cccccCCCCCcccceEEEehhHHH-HhcCChHHHHHHHH
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAI-ECCRHPWMQEALEK 167 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~-~~~~~~~~~~~l~~ 167 (198)
.........+|+.+++|++++++. ..+.++..+.++++
T Consensus 90 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~ 128 (130)
T cd04681 90 DDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVER 128 (130)
T ss_pred CCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHh
Confidence 543333344578889999999985 45667777877776
No 26
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.4e-19 Score=130.22 Aligned_cols=103 Identities=22% Similarity=0.216 Sum_probs=77.1
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE 132 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 132 (198)
+|||+++.+.+.|.+|||++++||++.+||.||++||||+.+.....++.+......... ......++|.+.....
T Consensus 13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~~ 88 (126)
T cd04688 13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGK----PGHEIEFYYLVTLLDE 88 (126)
T ss_pred EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCc----ccEEEEEEEEEEeCCC
Confidence 799998877678999999999999999999999999999999888888876543332211 1233566777776543
Q ss_pred ccCC-------CCCcccceEEEehhHHHHhcCCh
Q 029131 133 LESW-------PEQSTRQRSWLTVPEAIECCRHP 159 (198)
Q Consensus 133 ~~~~-------~~~e~~~~~W~~~~e~~~~~~~~ 159 (198)
.... ++.++.+++|++++++..+...|
T Consensus 89 ~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 89 SLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred cccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 3221 34578889999999998764444
No 27
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.3e-19 Score=129.45 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=76.4
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeee--ceeeEEEEeccCCccCCCCCCceEEEEEEEEEec
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHL--KEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVK 130 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 130 (198)
++||++++..+.|.||||++++||++++||.||++||||+.+.. ...++.+.+...... ......++|.+...
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~f~~~~~ 87 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEP-----GVDVRATVYVAELT 87 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCC-----CcEEEEEEEEEccc
Confidence 79999988878899999999999999999999999999999887 778887765433321 12335666766654
Q ss_pred ccccCCCCCcccceEEEehhHHHHhcCCh
Q 029131 131 EELESWPEQSTRQRSWLTVPEAIECCRHP 159 (198)
Q Consensus 131 ~~~~~~~~~e~~~~~W~~~~e~~~~~~~~ 159 (198)
. ...+..+..+++|++++++......|
T Consensus 88 ~--~~~~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 88 G--EPVPAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred C--CcCCCchhhccEEecHHHccccccCc
Confidence 4 23345678889999999986654444
No 28
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.6e-19 Score=128.37 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=74.5
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE 132 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 132 (198)
++||+++.. +.|.+|||++++||++.+||.||++||||+.+.....+..+... ....++|.+.+...
T Consensus 12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~------------~~~~~~f~~~~~~~ 78 (112)
T cd04667 12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGG------------STRHHVFVASVPPS 78 (112)
T ss_pred EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeCC------------CEEEEEEEEEcCCc
Confidence 799998764 78999999999999999999999999999998776666654321 11345566655543
Q ss_pred ccCCCCCcccceEEEehhHHHHhcCChHHHH
Q 029131 133 LESWPEQSTRQRSWLTVPEAIECCRHPWMQE 163 (198)
Q Consensus 133 ~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~ 163 (198)
....+.+|+.+++|++++++.++...+..+.
T Consensus 79 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 109 (112)
T cd04667 79 AQPKPSNEIADCRWLSLDALGDLNASAATRL 109 (112)
T ss_pred CCCCCchheeEEEEecHHHhhhcccchhhhh
Confidence 3334566888999999999999876665544
No 29
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.81 E-value=8.7e-19 Score=127.85 Aligned_cols=97 Identities=25% Similarity=0.248 Sum_probs=71.5
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE 132 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 132 (198)
++||+++...+.|.+|||++++||++.+||.||++||||+++....+++.+.+....... ..+...++|.+.....
T Consensus 13 ~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~----~~~~~~~~f~~~~~~~ 88 (125)
T cd04689 13 KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGV----RTHEINHIFAVESSWL 88 (125)
T ss_pred EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCc----eEEEEEEEEEEEcccc
Confidence 799999887788999999999999999999999999999999888888876544332211 1122345666654322
Q ss_pred c---cCCCCCcccceEEEehhHHH
Q 029131 133 L---ESWPEQSTRQRSWLTVPEAI 153 (198)
Q Consensus 133 ~---~~~~~~e~~~~~W~~~~e~~ 153 (198)
. ....++++.+++|++++++.
T Consensus 89 ~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 89 ASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred cccCCccCccceEEEEEccHHHcc
Confidence 1 22234567889999999965
No 30
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=6e-19 Score=128.49 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=72.4
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE 132 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 132 (198)
++||++++..+.|.+|||++++||++.+||.||++||||+.+...+.++.+......... ...+....+|.+.....
T Consensus 14 ~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~ 90 (123)
T cd04672 14 KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPP---QPYQVYKLFFLCEILGG 90 (123)
T ss_pred EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCC---CceEEEEEEEEEEecCC
Confidence 799999888888999999999999999999999999999998766777665433222110 01122344555665432
Q ss_pred ccCCCCCcccceEEEehhHHHHhc
Q 029131 133 LESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 133 ~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
. ..+..|..+++|++++++.++.
T Consensus 91 ~-~~~~~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 91 E-FKPNIETSEVGFFALDDLPPLS 113 (123)
T ss_pred c-ccCCCceeeeEEECHHHCcccc
Confidence 2 2234678889999999998865
No 31
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.81 E-value=1.5e-18 Score=130.32 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=81.0
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCC-CEEecceecCCCCCHHHHHHHHHHHHhCceeeec
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGP-GLLFPKGGWENDETVEEAALREALEEAGVRGHLK 97 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~-~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~ 97 (198)
+|.++++++++.+ .++||++|...+ .|.+|||++++||++.+||.||++||||+++...
T Consensus 2 ~~~~v~~ii~~~~--------------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~ 61 (147)
T cd03671 2 YRPNVGVVLFNED--------------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSV 61 (147)
T ss_pred CCceEEEEEEeCC--------------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCce
Confidence 5678888888654 279999988764 8999999999999999999999999999998776
Q ss_pred eeeEEE----EeccCCc--cCCCCC-CceEEEEEEEEEecc---cccCCC--CCcccceEEEehhHHHHhc
Q 029131 98 EFLGYY----DFKSKTL--QDEFSP-EGLCKAAMFALLVKE---ELESWP--EQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 98 ~~l~~~----~~~~~~~--~~~~~~-~~~~~~~~f~~~~~~---~~~~~~--~~e~~~~~W~~~~e~~~~~ 156 (198)
+.++.+ .|..... ...+.+ ......++|.+.+.. .....+ ++|+.+++|++++++.+++
T Consensus 62 ~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 62 EIIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred EEEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence 666643 2322211 000000 011234455554433 222222 4588899999999999976
No 32
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.1e-18 Score=127.97 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=81.9
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceee
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGH 95 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~ 95 (198)
+|.++++++++.+ .++||++|.. .+.|.+|||++++||++.+||.||++||||+++.
T Consensus 1 p~~~v~~ii~~~~--------------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~ 60 (129)
T cd04678 1 PRVGVGVFVLNPK--------------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIE 60 (129)
T ss_pred CceEEEEEEECCC--------------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCccc
Confidence 4678888888764 2799998873 5679999999999999999999999999999988
Q ss_pred eceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCC---CCCcccceEEEehhHHHHh
Q 029131 96 LKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESW---PEQSTRQRSWLTVPEAIEC 155 (198)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W~~~~e~~~~ 155 (198)
..+.++.+....... ..+....+|.+......... ..+++.+++|++++++.++
T Consensus 61 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 61 NVQFLTVTNDVFEEE------GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred ceEEEEEEeEEeCCC------CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 877777665433221 12345556666654432211 2346778899999999886
No 33
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.80 E-value=6.2e-19 Score=129.72 Aligned_cols=113 Identities=23% Similarity=0.242 Sum_probs=82.6
Q ss_pred ceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCcee
Q 029131 18 GCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRG 94 (198)
Q Consensus 18 ~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~ 94 (198)
.++.++++++++.+ +|||++|.. .+.|.+|||++++||++++||.||++||||+++
T Consensus 11 ~~~~~v~~ii~~~~---------------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~ 69 (130)
T cd04511 11 NPKIIVGCVPEWEG---------------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV 69 (130)
T ss_pred CCcEEEEEEEecCC---------------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE
Confidence 45677777777543 799999853 456999999999999999999999999999999
Q ss_pred eeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHH-hcCChHHH
Q 029131 95 HLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIE-CCRHPWMQ 162 (198)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~-~~~~~~~~ 162 (198)
.....++.+..... ....++|.+...... .....|..+.+|++++++.. .+.++.++
T Consensus 70 ~~~~~~~~~~~~~~----------~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~~~~ 127 (130)
T cd04511 70 EIDGLYAVYSVPHI----------SQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFPTVR 127 (130)
T ss_pred EeeeEEEEEecCCc----------eEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhccccccc
Confidence 87777777654321 224566777665432 23445778899999999963 34455443
No 34
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=8.3e-19 Score=131.57 Aligned_cols=112 Identities=24% Similarity=0.287 Sum_probs=84.9
Q ss_pred ceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC---CCEEecceecCCCCCHHHHHHHHHHHHhCcee
Q 029131 18 GCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG---PGLLFPKGGWENDETVEEAALREALEEAGVRG 94 (198)
Q Consensus 18 ~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~ 94 (198)
.....+++++.+.+ +|||++|.+. +.|.||||++|.|||+++||.||++||||+++
T Consensus 8 ~p~~~v~~~i~~~~---------------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~ 66 (145)
T COG1051 8 TPLVAVGALIVRNG---------------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRV 66 (145)
T ss_pred CcceeeeEEEEeCC---------------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc
Confidence 45667777777654 8999999885 56999999999999999999999999999999
Q ss_pred eeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe-cccccCCCCCcccceEEEehhHHHHhc
Q 029131 95 HLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV-KEELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
...+++.+++...++. ..++..++|.+.. .+.......++...+.|++++++..+.
T Consensus 67 ~~~~~~~v~~~~~rd~------r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 67 RVLELLAVFDDPGRDP------RGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred cceeEEEEecCCCCCC------ceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccc
Confidence 9999999988877652 1233444444443 333322233466778999999998753
No 35
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.3e-18 Score=126.59 Aligned_cols=95 Identities=28% Similarity=0.363 Sum_probs=69.0
Q ss_pred EEEEEEecCC--CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEec
Q 029131 53 EVLMINSTSG--PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVK 130 (198)
Q Consensus 53 ~vLLv~r~~~--~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 130 (198)
+|||++|.+. +.|.||||+++.|||+.+||.||++||||+++...+.++.+.+. .. ..++|.+...
T Consensus 13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~----------~~~~f~~~~~ 80 (121)
T cd04669 13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQN--GR----------TEHYFLARVI 80 (121)
T ss_pred EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeC--Cc----------EEEEEEEEEE
Confidence 7999998654 46999999999999999999999999999999877777776551 11 2445655532
Q ss_pred -ccccCC--------CCCcccceEEEehhHHHHhcCCh
Q 029131 131 -EELESW--------PEQSTRQRSWLTVPEAIECCRHP 159 (198)
Q Consensus 131 -~~~~~~--------~~~e~~~~~W~~~~e~~~~~~~~ 159 (198)
+..... .+.++..++|++++++..+...|
T Consensus 81 ~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 81 SGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred CCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 221110 12345568999999999875544
No 36
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.80 E-value=1.8e-18 Score=127.63 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=84.7
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
+|||++|.+. +.|.||||++++||++.+|+.||++||||+++....+++.+.+..+.. ....++|.+.
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 87 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGR--------RIHLHAWHVP 87 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCc--------EEEEEEEEEE
Confidence 7999988653 569999999999999999999999999999988777777665544332 2234455444
Q ss_pred ecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHHHHHHHHhhcc
Q 029131 129 VKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFLKLYADHM 177 (198)
Q Consensus 129 ~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~l~~~~ 177 (198)
..... ....+..+++|++++++.++...+..+.+++. +.+..+.++
T Consensus 88 ~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~-~~~~~~~~~ 133 (135)
T PRK10546 88 DFHGE--LQAHEHQALVWCTPEEALRYPLAPADIPLLEA-FMALRAARP 133 (135)
T ss_pred EecCc--ccccccceeEEcCHHHcccCCCCcCcHHHHHH-HHHhhccCC
Confidence 32111 12235667899999999998778888888888 877766554
No 37
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.1e-18 Score=126.27 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=68.7
Q ss_pred EEEEEEecC----CCCEEecceecCCCCCHHHHHHHHHHHHhCceee--eceeeEEEEeccCCccCCCCCCceEEEEEEE
Q 029131 53 EVLMINSTS----GPGLLFPKGGWENDETVEEAALREALEEAGVRGH--LKEFLGYYDFKSKTLQDEFSPEGLCKAAMFA 126 (198)
Q Consensus 53 ~vLLv~r~~----~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 126 (198)
+|||++|.+ .+.|.+|||++++||++.+||.||++||||+.+. ...+++.+.+..... .....++|.
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~-------~~~~~~~f~ 84 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI-------ESRIGLFFT 84 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC-------ceEEEEEEE
Confidence 799998865 3469999999999999999999999999999887 445666654443321 122344555
Q ss_pred EEec-ccccCCCCCcccceEEEehhHHHHhc
Q 029131 127 LLVK-EELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 127 ~~~~-~~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
+... +.......+|+.+++|++++++...+
T Consensus 85 ~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 85 VRRWSGEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred EEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence 5432 22222234577789999999997753
No 38
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.80 E-value=1.1e-18 Score=128.70 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=71.4
Q ss_pred cEEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 52 VEVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 52 ~~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
.++||++|.. .+.|.+|||+++.||++++||.||++||||+.+....+++.+.+... ....++|.+..
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----------~~~~~~f~~~~ 81 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP----------SSLMLGFTAEA 81 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCCC----------ceEEEEEEEEE
Confidence 4899998876 46799999999999999999999999999999988777766433222 12345566665
Q ss_pred cccccCCCCCcccceEEEehhHHHHh
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAIEC 155 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~~~ 155 (198)
........++|+.++.|++++++.++
T Consensus 82 ~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 82 DSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred cCCcccCCchhhhccEeecHHHHhhc
Confidence 54322233457788999999999884
No 39
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.5e-18 Score=125.77 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=68.4
Q ss_pred EEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEec
Q 029131 53 EVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVK 130 (198)
Q Consensus 53 ~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 130 (198)
+|||++++. .+.|.+|||+++.|||+.+||.||++||||+.+.....++...+..... .....+|.+.+.
T Consensus 15 ~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 86 (127)
T cd04670 15 EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAF--------GKSDLYFICRLK 86 (127)
T ss_pred eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCc--------CceeEEEEEEEc
Confidence 799998877 5789999999999999999999999999999987776665443221111 011222333332
Q ss_pred c-ccc-CCCCCcccceEEEehhHHHHhcCChH
Q 029131 131 E-ELE-SWPEQSTRQRSWLTVPEAIECCRHPW 160 (198)
Q Consensus 131 ~-~~~-~~~~~e~~~~~W~~~~e~~~~~~~~~ 160 (198)
. ... ...++|..+++|++++++.+......
T Consensus 87 ~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04670 87 PLSFDINFDTSEIAAAKWMPLEEYISQPITSE 118 (127)
T ss_pred cCcCcCCCChhhhheeEEEcHHHHhcchhHHH
Confidence 2 111 22345777899999999977643333
No 40
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=3.2e-18 Score=126.23 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=68.4
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCcee-eeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRG-HLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKE 131 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 131 (198)
+|||+++.+.+.|.||||++++||++.+||.||++||||+.+ .....++.+.......... ....+...++|.+.+..
T Consensus 12 ~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (131)
T cd04686 12 KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPD-ADIFHMISYYYLCEVDA 90 (131)
T ss_pred EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCC-CceeEEEEEEEEEEEcC
Confidence 799999887778999999999999999999999999999987 4556677654322111000 00112245666666543
Q ss_pred cc-cCCCC-Cc---ccceEEEehhHHHHh
Q 029131 132 EL-ESWPE-QS---TRQRSWLTVPEAIEC 155 (198)
Q Consensus 132 ~~-~~~~~-~e---~~~~~W~~~~e~~~~ 155 (198)
.. ....+ .+ ...+.|++++++.+.
T Consensus 91 ~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 91 ELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred CcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 22 11111 12 235899999999774
No 41
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.79 E-value=3.2e-18 Score=127.56 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=70.3
Q ss_pred EEEEEEecCC-----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeE-EEE-----eccCCccCCCCCCceEE
Q 029131 53 EVLMINSTSG-----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLG-YYD-----FKSKTLQDEFSPEGLCK 121 (198)
Q Consensus 53 ~vLLv~r~~~-----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~-~~~-----~~~~~~~~~~~~~~~~~ 121 (198)
+|||+||... +.|.+|||++++|||+.+||.||++||||+++....... .+. ........ ...+.
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 91 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRK----EEIYM 91 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCc----eeEEE
Confidence 7999997652 569999999999999999999999999999875433211 110 00011000 00111
Q ss_pred E-EEEEEEecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 122 A-AMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 122 ~-~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
. .+|.+.... ....+.+|+.+++|++++++.++...+..+.++.+
T Consensus 92 ~~~~~~~~~~~-~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 92 IYLIFDCVSAN-RDVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred EEEEEEeecCC-CcccCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence 1 223232222 22234568889999999999998767766666654
No 42
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.7e-18 Score=126.47 Aligned_cols=93 Identities=24% Similarity=0.262 Sum_probs=68.0
Q ss_pred EEEEEEecCC---CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 53 EVLMINSTSG---PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 53 ~vLLv~r~~~---~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
+|||+++.+. +.|.+|||+++.||++.+||.||++||||+++...+.++..... . ....++|.+..
T Consensus 13 ~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~--~---------~~~~~~f~a~~ 81 (123)
T cd04671 13 EVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG--G---------SWFRFVFTGNI 81 (123)
T ss_pred EEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC--C---------eEEEEEEEEEE
Confidence 7999987643 46999999999999999999999999999999888777653221 1 22456666664
Q ss_pred ccc-ccC--CCCCcccceEEEehhHHHHhc
Q 029131 130 KEE-LES--WPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 130 ~~~-~~~--~~~~e~~~~~W~~~~e~~~~~ 156 (198)
.+. ... .++.+..+++|+++++++..+
T Consensus 82 ~~g~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 82 TGGDLKTEKEADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred eCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence 432 221 123466789999999995433
No 43
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2.6e-18 Score=124.90 Aligned_cols=96 Identities=20% Similarity=0.147 Sum_probs=68.4
Q ss_pred EEEEEEecCC------CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEE
Q 029131 53 EVLMINSTSG------PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFA 126 (198)
Q Consensus 53 ~vLLv~r~~~------~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 126 (198)
++||++|... +.|.||||+++.||++++||.||++||||+++..........+..... ....++|.
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--------~~~~~~f~ 84 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASP--------PGTEHVFV 84 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCC--------CceEEEEE
Confidence 8999988653 579999999999999999999999999999986443322222222211 12456666
Q ss_pred EEecccc-cCCCCCcccceEEEehhHHHHhc
Q 029131 127 LLVKEEL-ESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 127 ~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
+...... .....+|+.+++|++++++.+..
T Consensus 85 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 85 VPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEecCCCccccCchhheeecccHHHHhhcc
Confidence 6644332 33456788899999999997753
No 44
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.78 E-value=4.9e-18 Score=125.72 Aligned_cols=100 Identities=22% Similarity=0.101 Sum_probs=73.2
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||+++... +.|.+|||+++.||++.+||.||++||||+.+.....++.+.+.... .....++|.+.
T Consensus 15 ~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 86 (137)
T cd03424 15 KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGF--------SDERIHLFLAE 86 (137)
T ss_pred eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcc--------cCccEEEEEEE
Confidence 7888876532 35999999999999999999999999999999766777665433211 12245566666
Q ss_pred ecccc--cCCCCCcccceEEEehhHHHHhcCChH
Q 029131 129 VKEEL--ESWPEQSTRQRSWLTVPEAIECCRHPW 160 (198)
Q Consensus 129 ~~~~~--~~~~~~e~~~~~W~~~~e~~~~~~~~~ 160 (198)
..... ....+.|+.+++|++++++.+++....
T Consensus 87 ~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 87 DLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred cccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 55432 233456788899999999999875544
No 45
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.78 E-value=2.3e-18 Score=130.83 Aligned_cols=98 Identities=20% Similarity=0.107 Sum_probs=71.1
Q ss_pred CccEEEEEEecC-----CCCEEecceecCCC-CCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEE
Q 029131 50 KIVEVLMINSTS-----GPGLLFPKGGWEND-ETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 50 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Es~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
+..+|||++|.. .+.|+||||++++| |++.+||+||++||||+++.....++.+....... ....+
T Consensus 14 ~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~--------~~~v~ 85 (157)
T cd03426 14 GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS--------GFVVT 85 (157)
T ss_pred CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC--------CCEEE
Confidence 346899999875 34699999999999 99999999999999999988877777654322221 11344
Q ss_pred EEEEEeccc-ccCCCCCcccceEEEehhHHHHh
Q 029131 124 MFALLVKEE-LESWPEQSTRQRSWLTVPEAIEC 155 (198)
Q Consensus 124 ~f~~~~~~~-~~~~~~~e~~~~~W~~~~e~~~~ 155 (198)
+|.+.+... .....++|+.++.|++++++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 86 PVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred EEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 455554432 22223347888999999999875
No 46
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5.3e-18 Score=122.65 Aligned_cols=93 Identities=25% Similarity=0.287 Sum_probs=68.1
Q ss_pred EEEEEEecC-----CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEE
Q 029131 53 EVLMINSTS-----GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFAL 127 (198)
Q Consensus 53 ~vLLv~r~~-----~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 127 (198)
+|||++|.. .+.|.||||++++||++++||.||++||||+++.....+..+.+.... ....++|.+
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~---------~~~~~~~~~ 82 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSE---------LQLLHYYVV 82 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCC---------eEEEEEEEE
Confidence 799999864 246999999999999999999999999999997666666665443221 123455555
Q ss_pred EecccccCCCCCcccceEEEehhHHHHhc
Q 029131 128 LVKEELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 128 ~~~~~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
....... ..+|..+++|+++++++.+.
T Consensus 83 ~~~~~~~--~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 83 TFWQGEI--PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEecCCC--CcccccccEEcCHHHcchhh
Confidence 5332221 23678899999999998753
No 47
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.77 E-value=1.2e-17 Score=126.74 Aligned_cols=136 Identities=22% Similarity=0.252 Sum_probs=88.7
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC-CCEEecceecCCCCCHHHHHHHHHHHHhCceee
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG-PGLLFPKGGWENDETVEEAALREALEEAGVRGH 95 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~ 95 (198)
+.+|.++++++++.+ .+|||+++... +.|.+|||++++||++.+||.||++||||+.+.
T Consensus 5 ~~~~~~v~~~i~~~~--------------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~ 64 (156)
T PRK00714 5 DGYRPNVGIILLNRQ--------------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPE 64 (156)
T ss_pred CCCCCeEEEEEEecC--------------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcc
Confidence 357888999988765 27999998664 679999999999999999999999999999987
Q ss_pred eceeeEEE----EeccCCccCC-CCC-CceEEEEEEEEEecc-ccc--C--CCCCcccceEEEehhHHHHhcCChHHHHH
Q 029131 96 LKEFLGYY----DFKSKTLQDE-FSP-EGLCKAAMFALLVKE-ELE--S--WPEQSTRQRSWLTVPEAIECCRHPWMQEA 164 (198)
Q Consensus 96 ~~~~l~~~----~~~~~~~~~~-~~~-~~~~~~~~f~~~~~~-~~~--~--~~~~e~~~~~W~~~~e~~~~~~~~~~~~~ 164 (198)
..+.++.+ .|..+..... ..+ ......++|.+.... ... . .+++|+.+++|++++++.+++. +..+.+
T Consensus 65 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~ 143 (156)
T PRK00714 65 DVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDV 143 (156)
T ss_pred ceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch-hhhHHH
Confidence 77666653 2222211000 000 001134556655432 111 1 1335888999999999998752 333555
Q ss_pred HHHHHHHHHh
Q 029131 165 LEKGFLKLYA 174 (198)
Q Consensus 165 l~~~~~~~l~ 174 (198)
+.. ..+.++
T Consensus 144 ~~~-~~~~~~ 152 (156)
T PRK00714 144 YRR-VLKEFA 152 (156)
T ss_pred HHH-HHHHHH
Confidence 555 444443
No 48
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.77 E-value=6.8e-18 Score=137.56 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=81.3
Q ss_pred cEEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEe
Q 029131 52 VEVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLV 129 (198)
Q Consensus 52 ~~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 129 (198)
.++||+++.. .+.|.+|||++|+|||+++||.||++||||+++...++++.+.+.++.. ..+.|.+..
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~p~~----------lm~~f~a~~ 212 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPFPHS----------LMLGFHADY 212 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecCCCe----------EEEEEEEEe
Confidence 4899998764 3569999999999999999999999999999999888888765544332 456676765
Q ss_pred cccccCCCCCcccceEEEehhHHHHhcCChHH-HHHHHHHHHH
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAIECCRHPWM-QEALEKGFLK 171 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~-~~~l~~~~~~ 171 (198)
........++|..+++|+++++++.+.....+ +.+++. +++
T Consensus 213 ~~~~~~~~~~Ei~~a~W~~~del~~lp~~~sia~~li~~-~~~ 254 (256)
T PRK00241 213 DSGEIVFDPKEIADAQWFRYDELPLLPPSGTIARRLIED-TVA 254 (256)
T ss_pred cCCcccCCcccEEEEEEECHHHCcccCCchHHHHHHHHH-HHH
Confidence 43332233457888999999999887655544 444544 443
No 49
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.75 E-value=1.8e-17 Score=122.45 Aligned_cols=105 Identities=21% Similarity=0.198 Sum_probs=70.7
Q ss_pred ccEEEEEEecCC--CCEEecceecCCCCCHHHHHHHHHHHHhCceeeec----eeeEEEEeccCCccCCCCCCceEEEEE
Q 029131 51 IVEVLMINSTSG--PGLLFPKGGWENDETVEEAALREALEEAGVRGHLK----EFLGYYDFKSKTLQDEFSPEGLCKAAM 124 (198)
Q Consensus 51 ~~~vLLv~r~~~--~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (198)
..++||+++..+ +.|.||||++++|||+.+||.||++||||+.+... ..++.+.+..+.... .........++
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 90 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-NEGIVGAKVFF 90 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-cccCcccEEEE
Confidence 448999988653 56999999999999999999999999999976642 123333333322100 00011235667
Q ss_pred EEEEecccccCCCCCcccceEEEehhHHHHhcC
Q 029131 125 FALLVKEELESWPEQSTRQRSWLTVPEAIECCR 157 (198)
Q Consensus 125 f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 157 (198)
|.+....... ....++.+++|++++++.+++.
T Consensus 91 f~~~~~~g~~-~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 91 FKARYMSGQF-ELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred EEEEEecCcc-ccCCCcceeEecCHHHHHhhcC
Confidence 7766443322 2346788999999999998763
No 50
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.1e-17 Score=120.91 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=72.3
Q ss_pred EEEEEEecC-----CCCEEe-cceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEE
Q 029131 53 EVLMINSTS-----GPGLLF-PKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFA 126 (198)
Q Consensus 53 ~vLLv~r~~-----~~~W~l-PgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 126 (198)
+|||++|.. .+.|.+ |||++++||++.+||+||++||||+.+.....++.+.+..... ....++|.
T Consensus 13 ~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~--------~~~~~~f~ 84 (126)
T cd04697 13 KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGN--------RVWGKVFS 84 (126)
T ss_pred eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCc--------eEEEEEEE
Confidence 788888764 235998 6999999999999999999999999988777777776543321 22344565
Q ss_pred EEecccccCCCCCcccceEEEehhHHHHhcCCh
Q 029131 127 LLVKEELESWPEQSTRQRSWLTVPEAIECCRHP 159 (198)
Q Consensus 127 ~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~ 159 (198)
+...... ....+|..+++|++++++.+++...
T Consensus 85 ~~~~~~~-~~~~~E~~~~~w~~~~el~~~~~~~ 116 (126)
T cd04697 85 CVYDGPL-KLQEEEVEEITWLSINEILQFKEGE 116 (126)
T ss_pred EEECCCC-CCCHhHhhheEEcCHHHHHHHhhcC
Confidence 5544322 2334678899999999999987543
No 51
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.74 E-value=3.6e-17 Score=126.99 Aligned_cols=115 Identities=24% Similarity=0.264 Sum_probs=78.8
Q ss_pred cEEEEEEecCCC-----CE-EecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEE
Q 029131 52 VEVLMINSTSGP-----GL-LFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMF 125 (198)
Q Consensus 52 ~~vLLv~r~~~~-----~W-~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f 125 (198)
.+|||++|...+ .| .+|||++++||++.+||.||++||||+.+.....++.+.+..... .....+|
T Consensus 49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~--------~~~~~~f 120 (180)
T PRK15393 49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENC--------RVWGALF 120 (180)
T ss_pred CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCc--------eEEEEEE
Confidence 378988876432 24 689999999999999999999999999876666666654433221 2223445
Q ss_pred EEEecccccCCCCCcccceEEEehhHHHHhc--CChHHHHHHHHHHHHHHhhc
Q 029131 126 ALLVKEELESWPEQSTRQRSWLTVPEAIECC--RHPWMQEALEKGFLKLYADH 176 (198)
Q Consensus 126 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~--~~~~~~~~l~~~~~~~l~~~ 176 (198)
.+...+. ......|+.++.|++++++.++. ..+.....+.. ++.+.+.+
T Consensus 121 ~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~-~l~~~~~~ 171 (180)
T PRK15393 121 SCVSHGP-FALQEEEVSEVCWMTPEEITARCDEFTPDSLKALAL-WLTRNAKN 171 (180)
T ss_pred EEEeCCC-CCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHH-HHHhhccc
Confidence 4443322 22234578889999999999874 33566677777 66666544
No 52
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.4e-17 Score=120.57 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=66.4
Q ss_pred EEEEEEecCC-----CCEEec-ceecCCCCCHHHHHHHHHHHHhCceeeec--eeeEEEEeccCCccCCCCCCceEEEEE
Q 029131 53 EVLMINSTSG-----PGLLFP-KGGWENDETVEEAALREALEEAGVRGHLK--EFLGYYDFKSKTLQDEFSPEGLCKAAM 124 (198)
Q Consensus 53 ~vLLv~r~~~-----~~W~lP-gG~ve~gEs~~eaa~REl~EEtGl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (198)
+|||++|... +.|.+| ||++++||++ +||+||++||||+.+... ..+..+.+.... ....++
T Consensus 13 ~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~---------~~~~~~ 82 (127)
T cd04693 13 ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG---------FDDYYL 82 (127)
T ss_pred eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC---------eEEEEE
Confidence 7899887642 479998 9999999999 999999999999997644 344544333221 123334
Q ss_pred EEEEecccccCCCCCcccceEEEehhHHHHhcCC
Q 029131 125 FALLVKEELESWPEQSTRQRSWLTVPEAIECCRH 158 (198)
Q Consensus 125 f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 158 (198)
|.+...........+|+.+++|++++++.+++..
T Consensus 83 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 83 FYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred EEecCcccccccCHHHhhhEEEeCHHHHHHHHhc
Confidence 4443322222223457888999999999998744
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.73 E-value=7.9e-17 Score=136.50 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=75.8
Q ss_pred EEEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeE------EEEeccCCccCCCCCCceEEEE
Q 029131 53 EVLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLG------YYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 53 ~vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
+|||++|.. .+.|.+|||++++||++++||+||++||||+++......+ .|.++.... ..+...+
T Consensus 215 ~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~------~~~~i~~ 288 (340)
T PRK05379 215 HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSL------RGRTITH 288 (340)
T ss_pred EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCC------CCcEEEE
Confidence 799999875 3459999999999999999999999999999876543332 222222111 1233455
Q ss_pred EEEEEeccc--ccCCCCCcccceEEEehhHHHHh--cCChHHHHHHHHHHH
Q 029131 124 MFALLVKEE--LESWPEQSTRQRSWLTVPEAIEC--CRHPWMQEALEKGFL 170 (198)
Q Consensus 124 ~f~~~~~~~--~~~~~~~e~~~~~W~~~~e~~~~--~~~~~~~~~l~~~~~ 170 (198)
+|.+..... ......++..+++|++++++..+ ..+.....++.. |+
T Consensus 289 ~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~-~~ 338 (340)
T PRK05379 289 AFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITH-FL 338 (340)
T ss_pred EEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHH-Hh
Confidence 565554322 12234567889999999999875 345666777766 54
No 54
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.72 E-value=1.9e-16 Score=115.42 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=74.5
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||++|... +.|+||||++++||++.+||.||++||||+.+.....++.+.+..+.. .....+|.+.
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 88 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDR--------HITLWFWLVE 88 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCc--------EEEEEEEEEE
Confidence 7999998763 469999999999999999999999999999877666676666555432 2234445444
Q ss_pred ecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 129 VKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 129 ~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
...... ...|..+.+|++++++......+..+.+++.
T Consensus 89 ~~~~~~--~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~ 125 (129)
T PRK10776 89 SWEGEP--WGKEGQPGRWVSQVALNADEFPPANEPIIAK 125 (129)
T ss_pred EECCcc--CCccCCccEEecHHHCccCCCCcccHHHHHH
Confidence 221111 2235667899999999886545555666655
No 55
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.72 E-value=4.9e-17 Score=124.46 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=80.5
Q ss_pred Cce-eEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC-----CCCEEec-ceecCCCCCHHHHHHHHHHHH
Q 029131 17 AGC-RLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS-----GPGLLFP-KGGWENDETVEEAALREALEE 89 (198)
Q Consensus 17 ~~~-r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEs~~eaa~REl~EE 89 (198)
+.. +.++++++++.+ .+|||.+|.. .+.|.+| ||++++||++++||+||++||
T Consensus 26 ~~~~~~~v~v~i~~~~--------------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EE 85 (165)
T cd02885 26 GTLLHRAFSVFLFNSK--------------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREE 85 (165)
T ss_pred CCcceeEEEEEEEcCC--------------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHH
Confidence 344 777787777654 2689988765 2458885 899999999999999999999
Q ss_pred hCceeeeceee-EEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcCC
Q 029131 90 AGVRGHLKEFL-GYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRH 158 (198)
Q Consensus 90 tGl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 158 (198)
||+.+.....+ ..+.+........ ......++|.+....... ...+|+.+++|++++++.+++..
T Consensus 86 tGl~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~f~~~~~~~~~-~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 86 LGITGDLLELVLPRFRYRAPDDGGL---VEHEIDHVFFARADVTLI-PNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred hCCCccchhhccceEEEEEEcCCCc---eeeEEEEEEEEEeCCCCC-CCccceeEEEEECHHHHHHHHHh
Confidence 99998877664 5544443221110 011234556555443322 24467888999999999997643
No 56
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=1.2e-16 Score=115.82 Aligned_cols=91 Identities=24% Similarity=0.277 Sum_probs=72.5
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE 132 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 132 (198)
++||+++. .+.|.+|||++++||++++||.||++||||+.+....+++.+....... .....+|.+.+...
T Consensus 12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~--------~~~~~~y~a~~~~~ 82 (118)
T cd04665 12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFES--------GFETLVYPAVSAQL 82 (118)
T ss_pred EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCC--------cEEEEEEEEEEEec
Confidence 78999886 4679999999999999999999999999999998889999887655431 23566777765544
Q ss_pred ccCCCCCcccceEEEehhHH
Q 029131 133 LESWPEQSTRQRSWLTVPEA 152 (198)
Q Consensus 133 ~~~~~~~e~~~~~W~~~~e~ 152 (198)
....+..|+....|++....
T Consensus 83 ~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 83 EEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred ccccccccccCcEEeccCCc
Confidence 44446678889999997655
No 57
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.72 E-value=3.9e-16 Score=121.65 Aligned_cols=101 Identities=24% Similarity=0.164 Sum_probs=73.6
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||+++... ..|+||||.+|+||++++||.||++||||+++..+..++.+....... ....++|.+.
T Consensus 60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~--------~~~~~~f~a~ 131 (185)
T PRK11762 60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYF--------SSKMNIVLAE 131 (185)
T ss_pred EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc--------CcEEEEEEEE
Confidence 7888887643 249999999999999999999999999999999988888765433221 1245566665
Q ss_pred ec-ccccCCCCCcccceEEEehhHHHHhcCChHH
Q 029131 129 VK-EELESWPEQSTRQRSWLTVPEAIECCRHPWM 161 (198)
Q Consensus 129 ~~-~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~ 161 (198)
.. .......+.|..+..|++++++.+++..+.+
T Consensus 132 ~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i 165 (185)
T PRK11762 132 DLYPERLEGDEPEPLEVVRWPLADLDELLARPDF 165 (185)
T ss_pred ccccccCCCCCCceeEEEEEcHHHHHHHHHcCCC
Confidence 32 2222223456678899999999998755444
No 58
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=1.3e-16 Score=116.20 Aligned_cols=57 Identities=30% Similarity=0.427 Sum_probs=49.7
Q ss_pred EeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEe-------cCCCCEEecceecCCCCCHHHHHHHHHHHHhCcee
Q 029131 22 VAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINS-------TSGPGLLFPKGGWENDETVEEAALREALEEAGVRG 94 (198)
Q Consensus 22 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~ 94 (198)
++|+|+|+.+ ++..+|||+++ +..+.|++|||+++.||++.+||+||++||||+.+
T Consensus 2 ~~g~v~~~~~-----------------~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~ 64 (126)
T cd04662 2 SAGILLYRFR-----------------DGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCV 64 (126)
T ss_pred eEEEEEEEEc-----------------CCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcc
Confidence 6899999887 45678999985 33457999999999999999999999999999987
Q ss_pred e
Q 029131 95 H 95 (198)
Q Consensus 95 ~ 95 (198)
.
T Consensus 65 ~ 65 (126)
T cd04662 65 D 65 (126)
T ss_pred e
Confidence 5
No 59
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.1e-16 Score=119.71 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=70.5
Q ss_pred CccEEEEEEecCC-----CCEEe-cceecCCCCCHHHHHHHHHHHHhCceeee--ceeeEEEEeccCCccCCCCCCceEE
Q 029131 50 KIVEVLMINSTSG-----PGLLF-PKGGWENDETVEEAALREALEEAGVRGHL--KEFLGYYDFKSKTLQDEFSPEGLCK 121 (198)
Q Consensus 50 ~~~~vLLv~r~~~-----~~W~l-PgG~ve~gEs~~eaa~REl~EEtGl~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (198)
+..++|+.+|... +.|.+ |||++++||++.+||+||++||||+.+.. +..++.+.+........ .....
T Consensus 15 ~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ 91 (144)
T cd04692 15 GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKL---IDREF 91 (144)
T ss_pred CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccccCCC---ccceE
Confidence 4568888888652 46998 69999999999999999999999998653 35566665443311000 01123
Q ss_pred EEEEEEEecc--cccCCCCCcccceEEEehhHHHHhc
Q 029131 122 AAMFALLVKE--ELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 122 ~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
.++|.+.... ......++|+.+++|++++++.+++
T Consensus 92 ~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 92 HHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred EEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 4556555432 1222234678899999999998876
No 60
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.70 E-value=6e-16 Score=122.07 Aligned_cols=103 Identities=20% Similarity=0.114 Sum_probs=74.6
Q ss_pred cEEEEEEecCCC---------CEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEE
Q 029131 52 VEVLMINSTSGP---------GLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKA 122 (198)
Q Consensus 52 ~~vLLv~r~~~~---------~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (198)
.+|||+++.+.+ .|++|+|.+|+||++++||.|||.||||+.+.....+..+... +.. .....
T Consensus 62 ~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~s-pg~-------~~e~~ 133 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLAS-PGG-------TSERS 133 (202)
T ss_pred CEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcC-CCc-------CceEE
Confidence 378888876532 3899999999999999999999999999999888777765332 222 12357
Q ss_pred EEEEEEeccc----c-cCCCCCcccceEEEehhHHHHhcCChHHH
Q 029131 123 AMFALLVKEE----L-ESWPEQSTRQRSWLTVPEAIECCRHPWMQ 162 (198)
Q Consensus 123 ~~f~~~~~~~----~-~~~~~~e~~~~~W~~~~e~~~~~~~~~~~ 162 (198)
++|.+..... . ....+.|...+.|++++++.+++..+.+.
T Consensus 134 ~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~ 178 (202)
T PRK10729 134 SIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKID 178 (202)
T ss_pred EEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCC
Confidence 7777764221 1 12234566778999999999988655543
No 61
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=4.5e-16 Score=113.51 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=64.6
Q ss_pred EEEEEEecC-----CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEE
Q 029131 53 EVLMINSTS-----GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFAL 127 (198)
Q Consensus 53 ~vLLv~r~~-----~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 127 (198)
++||++|.. .+.|.||||++++||++.+||.||++||||+.+.....+.......... ......++|.+
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 87 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSG------VYNVIYLVFVC 87 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCC------EEEEEEEEEEe
Confidence 789988865 3469999999999999999999999999999988776543222221110 01223344444
Q ss_pred EecccccCCCCCcccceEEEehhHHHHh
Q 029131 128 LVKEELESWPEQSTRQRSWLTVPEAIEC 155 (198)
Q Consensus 128 ~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 155 (198)
..... .....+|..+++|++++++..+
T Consensus 88 ~~~~~-~~~~~~e~~~~~w~~~~el~~~ 114 (129)
T cd04699 88 EALSG-AVKLSDEHEEYAWVTLEELAIL 114 (129)
T ss_pred eecCC-cccCChhheEEEEecHHHhhhh
Confidence 33222 2223456778999999998554
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.69 E-value=8.8e-16 Score=110.68 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=77.8
Q ss_pred cEEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEE
Q 029131 52 VEVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFAL 127 (198)
Q Consensus 52 ~~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 127 (198)
.++||++|.+. +.|.||||+++.+|++.++|.||++||||+.+...+.++.+.+..+.. ....++|.+
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 84 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDK--------RVTLHVFLV 84 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCC--------eEEEEEEEE
Confidence 37899888653 469999999999999999999999999999988777777776655432 234556655
Q ss_pred EecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 128 LVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 128 ~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
....... ...+..++.|++++++.++...+..+.+++.
T Consensus 85 ~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 85 ELWSGEP--QLLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred eeeCCCc--ccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 5432221 2345678899999999887655555555543
No 63
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.69 E-value=4e-16 Score=121.55 Aligned_cols=104 Identities=19% Similarity=0.099 Sum_probs=75.9
Q ss_pred cEEEEEEecCC---------CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEE
Q 029131 52 VEVLMINSTSG---------PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKA 122 (198)
Q Consensus 52 ~~vLLv~r~~~---------~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (198)
.+|||+++.+. ..|+||+|++++||++++||+||++||||+.+.....+..+... +.. .....
T Consensus 57 ~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~-~g~-------~~~~~ 128 (185)
T TIGR00052 57 DTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSS-PGG-------VTELI 128 (185)
T ss_pred CEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcC-CCC-------CcEEE
Confidence 47899987542 23899999999999999999999999999999888877765322 221 13467
Q ss_pred EEEEEEecccc----cCCCCCcccceEEEehhHHHHhcCChHHHH
Q 029131 123 AMFALLVKEEL----ESWPEQSTRQRSWLTVPEAIECCRHPWMQE 163 (198)
Q Consensus 123 ~~f~~~~~~~~----~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~ 163 (198)
++|.+...... ....++|.....|++++++.+++.++.+.+
T Consensus 129 ~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d 173 (185)
T TIGR00052 129 HLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDN 173 (185)
T ss_pred EEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCC
Confidence 77877755321 112334566789999999999986665543
No 64
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=8.2e-16 Score=115.08 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=68.0
Q ss_pred EEEEEEecC-----CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeec----eeeEEEEeccCCccCCCCCCceEEEE
Q 029131 53 EVLMINSTS-----GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLK----EFLGYYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 53 ~vLLv~r~~-----~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
++||++|.. .+.|.+|||++++||++.+||+||++||||+.+... ++++.+.+..+...... .....+..
T Consensus 14 ~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~ 92 (143)
T cd04694 14 KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRG-LPKRHHIV 92 (143)
T ss_pred EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCC-cccceeEE
Confidence 799999864 346999999999999999999999999999988753 56666544333210000 00011233
Q ss_pred EEEEE-eccc-----ccC-CCCCcccceEEEehhHHHHhcC
Q 029131 124 MFALL-VKEE-----LES-WPEQSTRQRSWLTVPEAIECCR 157 (198)
Q Consensus 124 ~f~~~-~~~~-----~~~-~~~~e~~~~~W~~~~e~~~~~~ 157 (198)
+|.+. .... ... ...+|+.+++|++++++.+++.
T Consensus 93 ~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~ 133 (143)
T cd04694 93 VYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVS 133 (143)
T ss_pred EEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHH
Confidence 33332 2211 111 2236888999999999998764
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.67 E-value=5.8e-16 Score=110.83 Aligned_cols=98 Identities=28% Similarity=0.397 Sum_probs=74.0
Q ss_pred EEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEec
Q 029131 53 EVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVK 130 (198)
Q Consensus 53 ~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 130 (198)
++||+++.. .+.|.+|||+++.||++.++|.||+.||+|+.+.....+..+.+..... ......++|.+.+.
T Consensus 13 ~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 86 (123)
T cd02883 13 RVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDE------GEHAVVFVFLARLV 86 (123)
T ss_pred CEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCC------CceEEEEEEEEEeC
Confidence 789999887 5789999999999999999999999999999887666666666555431 12446677777655
Q ss_pred ccccC-CCCCcccceEEEehhHHHHhc
Q 029131 131 EELES-WPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 131 ~~~~~-~~~~e~~~~~W~~~~e~~~~~ 156 (198)
..... ..+.+....+|++++++.+..
T Consensus 87 ~~~~~~~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 87 GGEPTLLPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred CCCcCCCCCCccceEEEEcHHHCcccc
Confidence 43321 234566788999999998754
No 66
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2e-15 Score=110.08 Aligned_cols=105 Identities=20% Similarity=0.150 Sum_probs=73.8
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||.+|... +.|+||||+++.||++.+|+.||++||||+.+.....++.+.+..+.. ....++|.+.
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~--------~~~~~~~~~~ 88 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRH--------ITLWFWLLER 88 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCc--------EEEEEEEEEE
Confidence 7899888653 469999999999999999999999999999987776676665554432 2345555554
Q ss_pred ecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 129 VKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 129 ~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
..+... ...+...+.|++++++.++........+++.
T Consensus 89 ~~~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~ 125 (128)
T TIGR00586 89 WEGGPP--GKEGQPEEWWVLVGLLADDFFPAANPVIIKL 125 (128)
T ss_pred EcCCCc--CcccccccEEeCHHHCCccCCCCCCHHHHHH
Confidence 433221 1234557899999999887544444555443
No 67
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.66 E-value=7.3e-15 Score=111.01 Aligned_cols=92 Identities=23% Similarity=0.297 Sum_probs=71.7
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEeccc
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEE 132 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 132 (198)
++||+++.. ..|++|||++++||++++||.||++||||+.+....+++.|...... .....++|.+.....
T Consensus 36 ~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~--------~~~~~~vf~A~~~~~ 106 (156)
T TIGR02705 36 QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGES--------TDFVKDVYFAEVSAL 106 (156)
T ss_pred EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCC--------cEEEEEEEEEEEecc
Confidence 688887764 46999999999999999999999999999999999999987654432 134677777776533
Q ss_pred ccCCCCCcccceE-EEehhHHHHhc
Q 029131 133 LESWPEQSTRQRS-WLTVPEAIECC 156 (198)
Q Consensus 133 ~~~~~~~e~~~~~-W~~~~e~~~~~ 156 (198)
. +.++..+.. +++++++.+++
T Consensus 107 ~---~~~e~~E~~~~~~~~~~~~~~ 128 (156)
T TIGR02705 107 E---SKDDYLETKGPVLLQEIPDII 128 (156)
T ss_pred c---cCCCceeeEeEEEHHHHHHHH
Confidence 2 225556665 79999998876
No 68
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.4e-15 Score=111.20 Aligned_cols=99 Identities=26% Similarity=0.282 Sum_probs=65.8
Q ss_pred EEEEEEecCC-----CCEEecceecCCCCCHHHHHHHHHHHHhCcee-eeceeeEEEEeccCCccCCCCCCceEEEEEEE
Q 029131 53 EVLMINSTSG-----PGLLFPKGGWENDETVEEAALREALEEAGVRG-HLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFA 126 (198)
Q Consensus 53 ~vLLv~r~~~-----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 126 (198)
+|||+++.+. +.|.+|||+++.||++.+||.||++||||+.+ .....+....+.+..... ......++|.
T Consensus 13 ~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~----~~~~~~~~f~ 88 (133)
T cd04685 13 RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV----DGRQEERFFL 88 (133)
T ss_pred eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc----cceeeEEEEE
Confidence 7899887643 35999999999999999999999999999998 555555443322111111 1123456676
Q ss_pred EEecccc---cCC--CC-CcccceEEEehhHHHHh
Q 029131 127 LLVKEEL---ESW--PE-QSTRQRSWLTVPEAIEC 155 (198)
Q Consensus 127 ~~~~~~~---~~~--~~-~e~~~~~W~~~~e~~~~ 155 (198)
+...... ... .+ .+...++|++++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 89 ARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 6654311 111 11 23456899999999885
No 69
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.64 E-value=3e-15 Score=116.54 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=76.4
Q ss_pred ceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC-----CCCEEec-ceecCCCCCHHHHHHHHHHHHhC
Q 029131 18 GCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS-----GPGLLFP-KGGWENDETVEEAALREALEEAG 91 (198)
Q Consensus 18 ~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEs~~eaa~REl~EEtG 91 (198)
....++++++++.+ .+|||++|.. .+.|.+| ||++++||++++||+||++||||
T Consensus 32 ~~h~av~v~i~~~~--------------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtG 91 (184)
T PRK03759 32 PLHLAFSCYLFDAD--------------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELG 91 (184)
T ss_pred CeeeEEEEEEEcCC--------------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhC
Confidence 45667777777643 2789988753 2346664 79999999999999999999999
Q ss_pred ceeeec-eeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcC
Q 029131 92 VRGHLK-EFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCR 157 (198)
Q Consensus 92 l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 157 (198)
+++... ..++.+.+......... .....++|.+...+.. ....+|+.+++|++++++.+++.
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vf~~~~~~~~-~~~~~Ev~~~~W~~~~el~~~i~ 154 (184)
T PRK03759 92 VEITDLELVLPDFRYRATDPNGIV---ENEVCPVFAARVTSAL-QPNPDEVMDYQWVDPADLLRAVD 154 (184)
T ss_pred CCccccccccceEEEEEecCCCce---eeEEEEEEEEEECCCC-CCChhHeeeEEEECHHHHHHHHH
Confidence 988644 34445544322211100 1123456666554322 22335788899999999999864
No 70
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.64 E-value=3e-15 Score=113.86 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=77.4
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC-----CCEEec-ceecCCCCCHHHHHHHHHHHHh
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG-----PGLLFP-KGGWENDETVEEAALREALEEA 90 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-gG~ve~gEs~~eaa~REl~EEt 90 (198)
..++.++++++++.+ .+|||.+|... +.|++| ||+++.|| .+||+||++|||
T Consensus 24 g~~h~~v~v~v~~~~--------------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~ 81 (158)
T TIGR02150 24 TPLHRAFSVFLFNEE--------------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREEL 81 (158)
T ss_pred CCeEEEEEEEEEcCC--------------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHH
Confidence 446677777777554 27899887652 569986 79999999 499999999999
Q ss_pred Cceeeece--eeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHhcCC
Q 029131 91 GVRGHLKE--FLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRH 158 (198)
Q Consensus 91 Gl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 158 (198)
|+.+...+ .+..+.+......+ .....++|.+...... ....+|+.++.|++++++.+++..
T Consensus 82 Gl~~~~~~l~~~~~~~~~~~~~~g-----~~~~~~~f~~~~~~~~-~~~~~Ev~~~~W~~~~el~~~~~~ 145 (158)
T TIGR02150 82 GIPADDVPLTVLPRFSYRARDAWG-----EHELCPVFFARAPVPL-NPNPEEVAEYRWVSLEELKEILKA 145 (158)
T ss_pred CCCccccceEEcceEEEEEecCCC-----cEEEEEEEEEecCCcc-cCChhHeeeEEEeCHHHHHHHHhc
Confidence 99887653 44444443322111 1234566666544322 223358889999999999998743
No 71
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.63 E-value=7.2e-15 Score=114.95 Aligned_cols=103 Identities=18% Similarity=0.092 Sum_probs=74.4
Q ss_pred cEEEEEEecCCC--------C--EEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEE
Q 029131 52 VEVLMINSTSGP--------G--LLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCK 121 (198)
Q Consensus 52 ~~vLLv~r~~~~--------~--W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (198)
.+|||+++.+.+ . |++|+|.+++| ++++||+||++||||+.+..+..++.+ +..+... ...
T Consensus 58 ~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~-~~spG~s-------~e~ 128 (191)
T PRK15009 58 KTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFEL-YMSPGGV-------TEL 128 (191)
T ss_pred CEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEE-EcCCccc-------CcE
Confidence 378999887643 2 89999999976 699999999999999999888888765 3333321 235
Q ss_pred EEEEEEEeccc--cc--CCCCCcccceEEEehhHHHHhcCChHHHH
Q 029131 122 AAMFALLVKEE--LE--SWPEQSTRQRSWLTVPEAIECCRHPWMQE 163 (198)
Q Consensus 122 ~~~f~~~~~~~--~~--~~~~~e~~~~~W~~~~e~~~~~~~~~~~~ 163 (198)
.++|.+..... .. ...++|..++.|++++++.+++....+.+
T Consensus 129 ~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~d 174 (191)
T PRK15009 129 IHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRD 174 (191)
T ss_pred EEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCc
Confidence 77777764321 11 12345677899999999999986555533
No 72
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.63 E-value=6.7e-15 Score=115.06 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=77.1
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC-----CCCEEecceecCCC-CCHHHHHHHHHHHHhCc
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS-----GPGLLFPKGGWEND-ETVEEAALREALEEAGV 92 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Es~~eaa~REl~EEtGl 92 (198)
.+.++.++++..+ +...+||++|.. .+.|+||||++|++ |++++||+||++||||+
T Consensus 29 ~~~aavvl~l~~~------------------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl 90 (190)
T PRK10707 29 QRQAAVLIPIVRR------------------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAI 90 (190)
T ss_pred CCCeEEEEEEEEC------------------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCC
Confidence 5667777777644 234788888553 34699999999975 68999999999999999
Q ss_pred eeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCC-CCCcccceEEEehhHHHHhc
Q 029131 93 RGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESW-PEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~e~~~~~ 156 (198)
.+.....++.+....... ......|.+.+....... .++|...+.|++++++.++.
T Consensus 91 ~~~~~~~lg~l~~~~~~~--------~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 91 PPSAVEVIGVLPPVDSST--------GYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred CccceEEEEEeeeeeccC--------CcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 998888888865332221 112333333333222222 34578889999999998864
No 73
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.62 E-value=9e-15 Score=113.41 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=81.9
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCC-----CCE-EecceecCCCCCHHHHHHHHHHHHh
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSG-----PGL-LFPKGGWENDETVEEAALREALEEA 90 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W-~lPgG~ve~gEs~~eaa~REl~EEt 90 (198)
..+..++-+.+|..++ ++..++|+.||... +.| .+|+|+++.||++.+||+||++|||
T Consensus 29 g~~h~~v~~~~~~~~~----------------~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~ 92 (180)
T cd03676 29 GLVTYGVHLNGYVRDE----------------DGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEA 92 (180)
T ss_pred CceEEEEEEEEEEEcC----------------CCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHh
Confidence 3455666665666651 11357888887652 458 5899999999999999999999999
Q ss_pred Cceeeec---eeeEEEEeccCCccCCCCCCceEEEEEEEEEecccc-cCCCCCcccceEEEehhHHHHhcCChHH
Q 029131 91 GVRGHLK---EFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEEL-ESWPEQSTRQRSWLTVPEAIECCRHPWM 161 (198)
Q Consensus 91 Gl~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~~~~~~ 161 (198)
|+.+... ..++.+.+........+ .....++|.+.++... ....++|+.++.|++++++.+++....+
T Consensus 93 Gl~~~~~~~l~~~g~~~~~~~~~~~~~---~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~ 164 (180)
T cd03676 93 GLPEDLVRQLKPVGVVSYLREGEAGGL---QPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEF 164 (180)
T ss_pred CCCHHHHhhceeccEEEEEEEcCCCcE---eeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCC
Confidence 9987753 34554443332111100 1234566666544322 2223467889999999999998755443
No 74
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.62 E-value=9.4e-15 Score=113.37 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=72.4
Q ss_pred CccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeec----------------eeeEEEEeccCCccCC
Q 029131 50 KIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLK----------------EFLGYYDFKSKTLQDE 113 (198)
Q Consensus 50 ~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~----------------~~l~~~~~~~~~~~~~ 113 (198)
..+++|+++|...+.|.||||+++++|++.+||.||++||||+.+... ..+.+|.....+...
T Consensus 47 ~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~- 125 (186)
T cd03670 47 PILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRN- 125 (186)
T ss_pred CeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCC-
Confidence 467999999988889999999999999999999999999997653222 123344332222210
Q ss_pred CCCCceEEEEEEEEEecc-----cccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 114 FSPEGLCKAAMFALLVKE-----ELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 114 ~~~~~~~~~~~f~~~~~~-----~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
.+..+.....|.+.... .......++..+++|+++++++.+ .....++|+.
T Consensus 126 -td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L--~~dH~~Il~~ 181 (186)
T cd03670 126 -TDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPL--YANHSQFLKK 181 (186)
T ss_pred -CCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccc--ccCHHHHHHH
Confidence 01122233334333221 112223456788999999998865 3445566655
No 75
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.56 E-value=4.3e-14 Score=103.21 Aligned_cols=44 Identities=39% Similarity=0.526 Sum_probs=38.3
Q ss_pred ccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceee
Q 029131 51 IVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGH 95 (198)
Q Consensus 51 ~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~ 95 (198)
..+||+.+... +.|.||||++++||++.+||.||++||||+++.
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 45777776654 569999999999999999999999999999873
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1.2e-13 Score=99.95 Aligned_cols=43 Identities=37% Similarity=0.380 Sum_probs=36.4
Q ss_pred EEEEEecC---CCCEEecceecCCCCCHHHHHHHHHHHHhCceeee
Q 029131 54 VLMINSTS---GPGLLFPKGGWENDETVEEAALREALEEAGVRGHL 96 (198)
Q Consensus 54 vLLv~r~~---~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~ 96 (198)
+||++|.. .+.|.||||++++||++.+||.||++||||+.+..
T Consensus 17 ~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 17 LLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 55555543 35699999999999999999999999999998764
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.55 E-value=1.1e-13 Score=115.88 Aligned_cols=105 Identities=20% Similarity=0.138 Sum_probs=75.0
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||.+|..+ +.|+||||+++.||++.+|+.||++||||+.+.....+..+.+..+.. ....++|.+.
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~--------~~~i~~y~~~ 89 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDK--------RVRLDVRRVT 89 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCC--------eEEEEEEEEE
Confidence 7999988653 469999999999999999999999999999987766666665544432 2245556544
Q ss_pred ecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 129 VKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 129 ~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
..... ....+...++|++++++.++...+..+.+++.
T Consensus 90 ~~~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~ 126 (312)
T PRK08999 90 AWQGE--PHGREGQPLAWVAPDELAVYPFPPANQPIVRA 126 (312)
T ss_pred EecCc--ccCccCCccEEecHHHcccCCCCcchHHHHHH
Confidence 32211 12345667899999999887655555555554
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.6e-14 Score=117.11 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=75.6
Q ss_pred EEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEec
Q 029131 53 EVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVK 130 (198)
Q Consensus 53 ~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 130 (198)
++||.++.. .+.+++-.|+||+|||+++|+.||++||+|+++..+++++...++++.. .+.-|.++..
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~S----------LMigf~aey~ 225 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHS----------LMLGFMAEYD 225 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchh----------hhhhheeeec
Confidence 467776554 4569999999999999999999999999999999999999988888875 4555666655
Q ss_pred ccccCCCCCcccceEEEehhHHHHhc
Q 029131 131 EELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 131 ~~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
.......+.|..+.+||+.+|+..++
T Consensus 226 sgeI~~d~~Eleda~WFs~~evl~~L 251 (279)
T COG2816 226 SGEITPDEGELEDARWFSRDEVLPAL 251 (279)
T ss_pred cccccCCcchhhhccccCHhHHhhhc
Confidence 54433344689999999999966654
No 79
>PLN02709 nudix hydrolase
Probab=99.48 E-value=3.9e-13 Score=106.73 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=68.3
Q ss_pred CccEEEEEEecC-----CCCEEecceecCCC-CCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEE
Q 029131 50 KIVEVLMINSTS-----GPGLLFPKGGWEND-ETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 50 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Es~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
++.+|||++|.. .+.|+||||++|++ +++.+||+||+.||+|+.....+.++......... ...++
T Consensus 49 ~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~s--------g~~V~ 120 (222)
T PLN02709 49 NELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKK--------GMSVA 120 (222)
T ss_pred CceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCC--------CCEEE
Confidence 356899999875 35699999999986 47899999999999999888777777754433221 11334
Q ss_pred EEEEEecc--cccC-CCCCcccceEEEehhHHHH
Q 029131 124 MFALLVKE--ELES-WPEQSTRQRSWLTVPEAIE 154 (198)
Q Consensus 124 ~f~~~~~~--~~~~-~~~~e~~~~~W~~~~e~~~ 154 (198)
-|...+.. .... ...+|..++.|+|++.+.+
T Consensus 121 P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 121 PVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred EEEEEecCCCCccccCChhhhheeEEecHHHHhC
Confidence 44443332 1221 2346888999999998865
No 80
>PLN03143 nudix hydrolase; Provisional
Probab=99.45 E-value=5.1e-12 Score=104.31 Aligned_cols=102 Identities=17% Similarity=0.075 Sum_probs=64.1
Q ss_pred ccEEEEEEecCC--C--CEEecceecCC-CCCHHHHHHHHHHHHhCceeeec--eeeEE--------EEeccCCccCCCC
Q 029131 51 IVEVLMINSTSG--P--GLLFPKGGWEN-DETVEEAALREALEEAGVRGHLK--EFLGY--------YDFKSKTLQDEFS 115 (198)
Q Consensus 51 ~~~vLLv~r~~~--~--~W~lPgG~ve~-gEs~~eaa~REl~EEtGl~~~~~--~~l~~--------~~~~~~~~~~~~~ 115 (198)
+.++||+++.+. + .|+||+|.+|+ +|++.+||+||++||||+.+... ..+.. --++.+...
T Consensus 142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~---- 217 (291)
T PLN03143 142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGC---- 217 (291)
T ss_pred CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCcc----
Confidence 446888887763 2 38999999997 58999999999999999986432 23321 012222211
Q ss_pred CCceEEEEEEEEE--eccc--------cc-CCCCCcccceEEEehhHHHHhcCCh
Q 029131 116 PEGLCKAAMFALL--VKEE--------LE-SWPEQSTRQRSWLTVPEAIECCRHP 159 (198)
Q Consensus 116 ~~~~~~~~~f~~~--~~~~--------~~-~~~~~e~~~~~W~~~~e~~~~~~~~ 159 (198)
...+++|.+. +... .. ...+.|...+.|++++++..+..+.
T Consensus 218 ---dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 218 ---DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred ---CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 1134555543 2211 01 1123466778999999999987544
No 81
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.41 E-value=7.3e-12 Score=91.81 Aligned_cols=104 Identities=23% Similarity=0.239 Sum_probs=67.5
Q ss_pred cEEEEEEecCCC-CEEecceecCCCCCHHH-HHHHHHHHHhCceee--eceeeEEEEeccCCccCCCCCCceEEEEEEEE
Q 029131 52 VEVLMINSTSGP-GLLFPKGGWENDETVEE-AALREALEEAGVRGH--LKEFLGYYDFKSKTLQDEFSPEGLCKAAMFAL 127 (198)
Q Consensus 52 ~~vLLv~r~~~~-~W~lPgG~ve~gEs~~e-aa~REl~EEtGl~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 127 (198)
.++|+.+++... .|.||||+++++|++.+ ||+||++||||+.+. ....++.+.......... .......++..
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 100 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV---GGREHRVFFVA 100 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc---cceEEEEEEee
Confidence 578999988877 89999999999999988 999999999999988 456666654433332100 00111222222
Q ss_pred Eecc--cccCCC----CCcccceEEEehhHHHHhcCC
Q 029131 128 LVKE--ELESWP----EQSTRQRSWLTVPEAIECCRH 158 (198)
Q Consensus 128 ~~~~--~~~~~~----~~e~~~~~W~~~~e~~~~~~~ 158 (198)
.... ...... ..+...+.|++++++......
T Consensus 101 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 101 EVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred eccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence 2111 111111 246778899999999886533
No 82
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.35 E-value=4e-11 Score=97.02 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=80.1
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCC-----CEEe-----cceecCCCC----------
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGP-----GLLF-----PKGGWENDE---------- 76 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~-----~W~l-----PgG~ve~gE---------- 76 (198)
..+..++.+++|+.+ .++||.||.... .|.. |++..++||
T Consensus 53 gl~Hra~~v~i~n~~--------------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~ 112 (247)
T PLN02552 53 GLLHRAFSVFLFNSK--------------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDG 112 (247)
T ss_pred CceEEEEEEEEEcCC--------------------CeEEEEEecCCCCCCCcceecccCCcccccccccccccccccccc
Confidence 456677777777654 278888887633 6954 444444432
Q ss_pred ---CHHHHHHHHHHHHhCceeee-----ceeeEEEEeccCCccCCCCCC---ceEEEEEEEEE-ecccccCCCCCcccce
Q 029131 77 ---TVEEAALREALEEAGVRGHL-----KEFLGYYDFKSKTLQDEFSPE---GLCKAAMFALL-VKEELESWPEQSTRQR 144 (198)
Q Consensus 77 ---s~~eaa~REl~EEtGl~~~~-----~~~l~~~~~~~~~~~~~~~~~---~~~~~~~f~~~-~~~~~~~~~~~e~~~~ 144 (198)
+..+||+||++||||+.+.. +.+++.+.+........|.+. .+...++|+.. ..........+|..++
T Consensus 113 ~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~ 192 (247)
T PLN02552 113 NVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADV 192 (247)
T ss_pred chhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheE
Confidence 16899999999999998643 455665555554320000000 01222333322 2222222344688899
Q ss_pred EEEehhHHHHhc-------CChHHHHHHHHHHH
Q 029131 145 SWLTVPEAIECC-------RHPWMQEALEKGFL 170 (198)
Q Consensus 145 ~W~~~~e~~~~~-------~~~~~~~~l~~~~~ 170 (198)
+|++++++.+++ ..|.++.++.. ++
T Consensus 193 ~wvs~~el~~~~~~~~~~~~tpw~~~~~~~-~l 224 (247)
T PLN02552 193 KYVNREELKEMMRKESGLKLSPWFRLIVDN-FL 224 (247)
T ss_pred EEEeHHHHHHHHhhcCCcccCHHHHHHHHH-HH
Confidence 999999999985 36777777776 44
No 83
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.34 E-value=2.8e-13 Score=110.55 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=67.0
Q ss_pred EEEEEEecC--CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE-e
Q 029131 53 EVLMINSTS--GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL-V 129 (198)
Q Consensus 53 ~vLLv~r~~--~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~ 129 (198)
+.||.++++ ++-|..++|++|+|||++|||+||++||||++++.+.++..-.++..... ..+.++.+. .
T Consensus 201 ~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~S--------LMIgc~ala~~ 272 (345)
T KOG3084|consen 201 HALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQS--------LMIGCLALAKL 272 (345)
T ss_pred EeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchH--------HHHHHHHHHhh
Confidence 667766554 34599999999999999999999999999999998887777666622210 011122221 2
Q ss_pred cccccCCCCCcccceEEEehhHHHHhc
Q 029131 130 KEELESWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 130 ~~~~~~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
+.......+.|..+.+||+-+++.+.+
T Consensus 273 ~~~I~vd~dlEleDaqwF~r~ev~~aL 299 (345)
T KOG3084|consen 273 NGKISVDKDLELEDAQWFDREEVKSAL 299 (345)
T ss_pred CCccccCcchhhhhcccccHHHHHHHH
Confidence 222233344488899999999998765
No 84
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.30 E-value=2.1e-11 Score=87.26 Aligned_cols=60 Identities=30% Similarity=0.420 Sum_probs=51.4
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEec-------CCCCEEecceecCCCCCHHHHHHHHHHHHhC
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINST-------SGPGLLFPKGGWENDETVEEAALREALEEAG 91 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~-------~~~~W~lPgG~ve~gEs~~eaa~REl~EEtG 91 (198)
++.++|+++|+.. .+...|||++.. +.+.|++|+|-...||++..||.||..||+|
T Consensus 2 pK~SAGvLlYR~~-----------------aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~G 64 (161)
T COG4119 2 PKLSAGVLLYRAR-----------------AGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIG 64 (161)
T ss_pred CcccceeEEEEec-----------------CCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhc
Confidence 3568999999987 456789999843 3456999999999999999999999999999
Q ss_pred ceee
Q 029131 92 VRGH 95 (198)
Q Consensus 92 l~~~ 95 (198)
+.++
T Consensus 65 i~vd 68 (161)
T COG4119 65 ICVD 68 (161)
T ss_pred eeec
Confidence 9885
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.26 E-value=9.1e-11 Score=107.66 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=67.3
Q ss_pred cEEEEEEecC-----CCCEEe-cceecCCCCCHHHHHHHHHHHHhCceeee--ceeeEEEEeccCCccCCCCCCceEEEE
Q 029131 52 VEVLMINSTS-----GPGLLF-PKGGWENDETVEEAALREALEEAGVRGHL--KEFLGYYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 52 ~~vLLv~r~~-----~~~W~l-PgG~ve~gEs~~eaa~REl~EEtGl~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
.++||.+|.. .+.|.+ |||+++.||+..+||+||+.||+|+.+.. ..+++.+.+......+.+. .+...+
T Consensus 45 gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~--e~E~~~ 122 (770)
T PLN02791 45 QELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFI--NNEYND 122 (770)
T ss_pred CeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcc--eeeEEE
Confidence 3788888865 346998 89999999999999999999999998643 3455554332211111111 112344
Q ss_pred EEEEEecccc---c-CCCCCcccceEEEehhHHHHhc
Q 029131 124 MFALLVKEEL---E-SWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 124 ~f~~~~~~~~---~-~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
+|.+...... . ...++|+.+++|++++++.+++
T Consensus 123 VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 123 VYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred EEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHH
Confidence 5554322211 1 1234689999999999998776
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.09 E-value=2.6e-09 Score=82.08 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCccEEEEEEecCCC--C--EEecceecCCCCCHHHHHHHHHHHHhCceeeec-eeeEEEEeccCCccCCCCCCceEEEE
Q 029131 49 EKIVEVLMINSTSGP--G--LLFPKGGWENDETVEEAALREALEEAGVRGHLK-EFLGYYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 49 ~~~~~vLLv~r~~~~--~--W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
+++.+++|+++.+.+ + .+||+|-++.||+++.||+|||+||||+..... .....|-.+.-.+ - ...+.
T Consensus 85 dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn------~-~~~iv 157 (225)
T KOG3041|consen 85 DGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTN------C-NLCIV 157 (225)
T ss_pred CCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCC------C-ceEEE
Confidence 467799999987743 3 688999999999999999999999999985543 2222232221111 0 11233
Q ss_pred EEEEE--eccccc---CCCCCcccceEEEehhHHHHhc
Q 029131 124 MFALL--VKEELE---SWPEQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 124 ~f~~~--~~~~~~---~~~~~e~~~~~W~~~~e~~~~~ 156 (198)
++.+. ..+... ...+.|..++.-++..++.+.+
T Consensus 158 ~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 158 VVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWREL 195 (225)
T ss_pred EEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHH
Confidence 33332 222221 1223577788899999887754
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.01 E-value=1.4e-08 Score=72.44 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=66.5
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||.||... |.|+||+|.++.+|+..++..|++.+|.++ ....++.+.+..+.. .....+|.+.
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~--------~~~~~~~~~~ 83 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHF--------RLTLHVYLAR 83 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCe--------EEEEEEEEEE
Confidence 7899998764 459999999999999999999999998765 223345555554432 2345566555
Q ss_pred ecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHH
Q 029131 129 VKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALE 166 (198)
Q Consensus 129 ~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~ 166 (198)
..... .+..+.+|++++++.++.....++.+++
T Consensus 84 ~~~~~-----~~~~~~~W~~~eel~~~~~p~~~~kil~ 116 (118)
T cd03431 84 LEGDL-----LAPDEGRWVPLEELDEYALPTVMRKILE 116 (118)
T ss_pred EeCCC-----cCccccEEccHHHHhhCCCCHHHHHHHH
Confidence 43221 2345679999999988754555555553
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.93 E-value=3.2e-09 Score=83.79 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=72.0
Q ss_pred eeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecC-----CCCEEecceecCCC-CCHHHHHHHHHHHHhCc
Q 029131 19 CRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTS-----GPGLLFPKGGWEND-ETVEEAALREALEEAGV 92 (198)
Q Consensus 19 ~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Es~~eaa~REl~EEtGl 92 (198)
.|.++.+|++...+ .++.+|||.+|.. .|.-+||||+.++. ++..++|.||.+||+|+
T Consensus 41 ~~~~aVlI~L~~~~----------------~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl 104 (246)
T KOG3069|consen 41 NRKAAVLIPLVQVG----------------SGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGL 104 (246)
T ss_pred CCCccEEEEEEEcC----------------CCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCC
Confidence 35666667766553 3567888888765 34579999999965 47778999999999999
Q ss_pred eeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecc-cccCCCCCcccceEEEehhHHHH
Q 029131 93 RGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKE-ELESWPEQSTRQRSWLTVPEAIE 154 (198)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~e~~~~~W~~~~e~~~ 154 (198)
.......++.........+-. ..-...|.....- ........|...+.|+|++++..
T Consensus 105 ~~~~~~~~g~l~~~~~r~~~~-----v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 105 DPELVDVLGALPPFVLRSGWS-----VFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred CHHHhhhhhhccceeeccCcc-----cceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence 876665555533222211100 1112222222111 12233456888999999999866
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-08 Score=83.09 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=71.0
Q ss_pred cEEEEEEecC-----CCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEE-eccCCccCCCCCCceEEEEEE
Q 029131 52 VEVLMINSTS-----GPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYD-FKSKTLQDEFSPEGLCKAAMF 125 (198)
Q Consensus 52 ~~vLLv~r~~-----~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~f 125 (198)
.+||+++... .+.|-+|+|.|+++|++.++|+||++||||++....+.+..-. +..... ..+...+|
T Consensus 127 ~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~-------~~ksd~f~ 199 (295)
T KOG0648|consen 127 KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFG-------LIKSDMFF 199 (295)
T ss_pred ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhh-------ccccccee
Confidence 4899998654 4569999999999999999999999999999554433322100 000000 00122334
Q ss_pred EEEecc--cccCCCCCcccceEEEehhHHHHhcC---ChHHHHHHHHHHHHHHhhcccc
Q 029131 126 ALLVKE--ELESWPEQSTRQRSWLTVPEAIECCR---HPWMQEALEKGFLKLYADHMIS 179 (198)
Q Consensus 126 ~~~~~~--~~~~~~~~e~~~~~W~~~~e~~~~~~---~~~~~~~l~~~~~~~l~~~~~~ 179 (198)
.+.... ........+...++|+++++....+. .+..+.+-.- ..+++..+.++
T Consensus 200 ~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~I-c~~~~~~~~~~ 257 (295)
T KOG0648|consen 200 TCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGI-CLNRLEEFYLG 257 (295)
T ss_pred EEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhh-hHHHHhhhcCC
Confidence 443322 11222344667779999998877642 2223333333 55666655433
No 90
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.64 E-value=1.3e-07 Score=71.51 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=70.0
Q ss_pred EEEEEEecCC-----CCEEe-cceecCCCCCHHHHHHHHHHHHhCceeee---ceeeEEEEeccCCccCCCCCCceEEEE
Q 029131 53 EVLMINSTSG-----PGLLF-PKGGWENDETVEEAALREALEEAGVRGHL---KEFLGYYDFKSKTLQDEFSPEGLCKAA 123 (198)
Q Consensus 53 ~vLLv~r~~~-----~~W~l-PgG~ve~gEs~~eaa~REl~EEtGl~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (198)
++||.||... +.|.= .-||--+||+..+|++|-+.+|+||+... .+++..|.|..+...+... ....+
T Consensus 46 ~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E---~Eic~ 122 (185)
T COG1443 46 QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVE---NEICP 122 (185)
T ss_pred ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcce---eeeee
Confidence 6677766542 23532 34666699999999999999999999873 3666677777776544322 22445
Q ss_pred EEEEEecccccCCCCCcccceEEEehhHHHHhcCC
Q 029131 124 MFALLVKEELESWPEQSTRQRSWLTVPEAIECCRH 158 (198)
Q Consensus 124 ~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 158 (198)
++.+........ .++|..+++|++++++.+++.+
T Consensus 123 V~~~~~~~~~~~-npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 123 VLAARLDSALDP-NPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred EEEEeecCCCCC-ChHHhhheeccCHHHHHHhhcC
Confidence 555555543332 3478999999999999998753
No 91
>PLN02839 nudix hydrolase
Probab=98.53 E-value=3e-06 Score=71.79 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=72.7
Q ss_pred CccEEEEEEecC-----CCCE-EecceecCCCCCHHHHHHHHHHHHhCceee---eceeeEEEEeccCCccCCCCCCceE
Q 029131 50 KIVEVLMINSTS-----GPGL-LFPKGGWENDETVEEAALREALEEAGVRGH---LKEFLGYYDFKSKTLQDEFSPEGLC 120 (198)
Q Consensus 50 ~~~~vLLv~r~~-----~~~W-~lPgG~ve~gEs~~eaa~REl~EEtGl~~~---~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (198)
++.++.+-||.. .+.| .+.+|++..||++.++++||+.||+|+... .....+.+.|....... . ...
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g-~---~~e 291 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYC-F---KRD 291 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCc-c---ccC
Confidence 345666666554 2346 357999999999999999999999999754 34667777766443321 1 123
Q ss_pred EEEEEEEEecccccC-CCCCcccceEEEehhHHHHhcC
Q 029131 121 KAAMFALLVKEELES-WPEQSTRQRSWLTVPEAIECCR 157 (198)
Q Consensus 121 ~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~~~~ 157 (198)
..++|.+++...... ..+.|..++.+++++|+.+.+.
T Consensus 292 vly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~ 329 (372)
T PLN02839 292 VLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIR 329 (372)
T ss_pred EEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHH
Confidence 566788876654433 3456888999999999988763
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.34 E-value=9e-06 Score=58.08 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=58.5
Q ss_pred cEEEEEEecCCC----CEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEE
Q 029131 52 VEVLMINSTSGP----GLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFAL 127 (198)
Q Consensus 52 ~~vLLv~r~~~~----~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 127 (198)
.++||.||..++ -|+||.--.+. ++..+.+.+.+.+..|+.+...+.++.+.+..+.. .....+|.+
T Consensus 9 ~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~--------~~~~~~~~~ 79 (114)
T PF14815_consen 9 GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHR--------RWTIHVYEV 79 (114)
T ss_dssp SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSE--------EEEEEEEEE
T ss_pred CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccce--------EEEEEEEEE
Confidence 479999998754 59999987774 33456666677788999888878888888777753 445667777
Q ss_pred EecccccCCCCCcccceEEEehhHHHHhcCChHHHHH
Q 029131 128 LVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEA 164 (198)
Q Consensus 128 ~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~ 164 (198)
.+...... .....+|++.+++.++.....++.+
T Consensus 80 ~~~~~~~~----~~~~~~W~~~~~l~~~~~p~~~~ki 112 (114)
T PF14815_consen 80 EVSADPPA----EPEEGQWVSLEELDQYPLPTPMRKI 112 (114)
T ss_dssp EEE-SS--------TTEEEEEGGGGGGS---HHHHHH
T ss_pred EecCCCCC----CCCCcEEEEHHHHhhCCCCHHHHHH
Confidence 66543322 3557899999999886444434443
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.95 E-value=3.8e-05 Score=60.35 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=37.3
Q ss_pred cEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHh
Q 029131 52 VEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEA 90 (198)
Q Consensus 52 ~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEt 90 (198)
++++.++|...+.|.+|||.+++||.+-.+++||+.||.
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 789999999999999999999999999999999999996
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.65 E-value=1.4e-05 Score=66.31 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=62.2
Q ss_pred ccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE-e
Q 029131 51 IVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL-V 129 (198)
Q Consensus 51 ~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~ 129 (198)
.-++||++..+...|.||.|++...|+..+||.||+.||||.+.... +..+.+...+-.+ ....+|... +
T Consensus 94 ~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skq--l~~~e~Ie~nI~d-------q~~~~fIi~gv 164 (348)
T KOG2937|consen 94 RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQ--LQDNEGIETNIRD-------QLVRLFIINGV 164 (348)
T ss_pred hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHH--hccccCcccchhh-------ceeeeeeeccc
Confidence 44789998877777999999999999999999999999999877633 2222222222111 123334332 2
Q ss_pred ccc--ccCCCCCcccceEEEehhHHH
Q 029131 130 KEE--LESWPEQSTRQRSWLTVPEAI 153 (198)
Q Consensus 130 ~~~--~~~~~~~e~~~~~W~~~~e~~ 153 (198)
... .......|.....|+.++++.
T Consensus 165 s~d~~f~~~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 165 SEDTNFNPRVRKEISKIHWHYLDHLV 190 (348)
T ss_pred eeeeecchhhhccccceeeeehhhhc
Confidence 221 222233567788999999983
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.45 E-value=0.0012 Score=51.17 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=47.3
Q ss_pred CceeEEeeEEEEeecCCCCCCCCCCCCCCCCCCCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhCcee--
Q 029131 17 AGCRLVAGCIPFKYRNRNCEEGDGDGDGDGRSEKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAGVRG-- 94 (198)
Q Consensus 17 ~~~r~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~-- 94 (198)
.+.|.+|.+|++... -+...|||+|... ..|.||||.+.+||+..++..|.+.+-.|..-
T Consensus 40 ~GmRrsVe~Vllvh~-----------------h~~PHvLLLq~~~-~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~ 101 (188)
T PF13869_consen 40 EGMRRSVEGVLLVHE-----------------HGHPHVLLLQIGN-TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGV 101 (188)
T ss_dssp HSSEEEEEEEEEEEE-----------------TTEEEEEEEEETT-TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS
T ss_pred hCCceEEEEEEEEec-----------------CCCcEEEEEeccC-ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCC
Confidence 456766666665555 2467899999644 47999999999999999999999999999853
Q ss_pred ----eeceeeEEEE
Q 029131 95 ----HLKEFLGYYD 104 (198)
Q Consensus 95 ----~~~~~l~~~~ 104 (198)
.+.+.++.|-
T Consensus 102 ~~~w~vge~l~~Ww 115 (188)
T PF13869_consen 102 DPDWEVGECLGTWW 115 (188)
T ss_dssp ----EEEEEEEEEE
T ss_pred CCCcEecCEEEEEe
Confidence 2335666653
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.03 E-value=0.009 Score=45.05 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=61.8
Q ss_pred EEEEEEecCCC-------CEEe-cceecCCCC--CHHHH-----HHHHHHHHhCce---eeeceeeEEEEeccCCccCCC
Q 029131 53 EVLMINSTSGP-------GLLF-PKGGWENDE--TVEEA-----ALREALEEAGVR---GHLKEFLGYYDFKSKTLQDEF 114 (198)
Q Consensus 53 ~vLLv~r~~~~-------~W~l-PgG~ve~gE--s~~ea-----a~REl~EEtGl~---~~~~~~l~~~~~~~~~~~~~~ 114 (198)
+||+-.|-.++ .+++ -|||+..++ ++.+. +.||+.||.++. ...+.+++........-
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neV---- 148 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEV---- 148 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCccc----
Confidence 78888876543 3666 799998544 33333 669999999997 44446666653332221
Q ss_pred CCCceEEEEEEEEEecccccCCCCCcccceEEEehhHHHHh
Q 029131 115 SPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIEC 155 (198)
Q Consensus 115 ~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 155 (198)
...+...+|............+.+...+.|+...++.+.
T Consensus 149 --gkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~ 187 (203)
T COG4112 149 --GKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF 187 (203)
T ss_pred --ceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH
Confidence 234456667666544322234556778899999999883
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.02 E-value=0.0027 Score=52.34 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=57.9
Q ss_pred EecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCCCCcccceE
Q 029131 66 LFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRS 145 (198)
Q Consensus 66 ~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~ 145 (198)
++-+|.++..-|+.+-|..|+.||+|+++.....+.+++|....+... ...++|++++..............-+
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~------sa~~l~y~ei~es~kis~gggv~~~~ 155 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSG------SAQHLYYAEIDESMKISEGGGVITKV 155 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCc------cchheeeeecchhhccccCCceeeEE
Confidence 566999999999999999999999999999988888888877665432 24678888877655444333333334
Q ss_pred EEehh
Q 029131 146 WLTVP 150 (198)
Q Consensus 146 W~~~~ 150 (198)
..+++
T Consensus 156 ~~~~~ 160 (405)
T KOG4432|consen 156 YYPVN 160 (405)
T ss_pred EEeeh
Confidence 44443
No 98
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.012 Score=45.85 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhCceeeec-----eeeEEEEeccCCccCCCCCCceEEEEEEEEEecccccCCC-CCcccceEEEehh
Q 029131 77 TVEEAALREALEEAGVRGHLK-----EFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWP-EQSTRQRSWLTVP 150 (198)
Q Consensus 77 s~~eaa~REl~EEtGl~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~ 150 (198)
....||+|-|.-|+||....+ .+++.+.|..+.. +.+.. +-.-|.+.........| ..|..+++|++.+
T Consensus 104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sd-g~wGE----hEiDYiL~~~~~~~~nPnpnEv~e~ryvs~e 178 (225)
T KOG0142|consen 104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSD-GIWGE----HEIDYILFLVKDVTLNPNPNEVSEIRYVSRE 178 (225)
T ss_pred HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCC-CCccc----ceeeEEEEEeccCCCCCChhhhhHhheecHH
Confidence 678899999999999976544 5778777777665 22221 22233333333333334 3688999999999
Q ss_pred HHHHhcC------ChHHHHHHHH
Q 029131 151 EAIECCR------HPWMQEALEK 167 (198)
Q Consensus 151 e~~~~~~------~~~~~~~l~~ 167 (198)
|+.+++. .|.++-+.+.
T Consensus 179 elkel~~~~~~~~TPWfkli~~~ 201 (225)
T KOG0142|consen 179 ELKELVAKASAGFTPWFKLISEN 201 (225)
T ss_pred HHHHHHhccccCCChHHHHHHHH
Confidence 9999873 3677666665
No 99
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.033 Score=44.93 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=62.7
Q ss_pred cEEEEEEecC--CCCEEecceec-CCCCCHHHHHHHHHHHHhCceeeec----eeeEEEEeccCCccCCCCCCceEEEEE
Q 029131 52 VEVLMINSTS--GPGLLFPKGGW-ENDETVEEAALREALEEAGVRGHLK----EFLGYYDFKSKTLQDEFSPEGLCKAAM 124 (198)
Q Consensus 52 ~~vLLv~r~~--~~~W~lPgG~v-e~gEs~~eaa~REl~EEtGl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (198)
..+||+++.- ...|.||.+.. ++++++..+|.|+|+.-.|=..... .+++.+.+..+..... ......++++
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~-e~~~~sk~ff 217 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTT-EEPVSSKVFF 217 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccc-cccccceeEE
Confidence 4577777542 34699999999 9999999999999999998654432 4555333333322111 0111223445
Q ss_pred EEEE-ecccccCCCCCcccceEEEehhHHHHhcC
Q 029131 125 FALL-VKEELESWPEQSTRQRSWLTVPEAIECCR 157 (198)
Q Consensus 125 f~~~-~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 157 (198)
|.+. +.+.... .....++.|++-+++.+.+.
T Consensus 218 ~k~~lv~~~~~k--n~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 218 FKASLVANSNQK--NQNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred eeeeeccccchh--cccccceEEechHHHhhhcc
Confidence 5444 3332111 12233589999999988764
No 100
>PRK10880 adenine DNA glycosylase; Provisional
Probab=95.74 E-value=0.13 Score=44.12 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=49.0
Q ss_pred EEEEEEecCC----CCEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEEEEEE
Q 029131 53 EVLMINSTSG----PGLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAMFALL 128 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 128 (198)
++||.+|... +.|+||.. +.. ...++..|+.|+.......++.+.+.++.. .....+|.+.
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~--------~~~~~~~~~~ 307 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIAADNLTQLTAFRHTFSHF--------HLDIVPMWLP 307 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cch-----hhHHHHHHhcCCchhhhcccCceEEEEeeE--------EEEEEEEEEE
Confidence 7888888764 45999963 211 124566678887532222244444433321 1123344333
Q ss_pred ecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHHH
Q 029131 129 VKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 129 ~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
......... .....|++++++.++.....++.+++.
T Consensus 308 ~~~~~~~~~---~~~~~w~~~~~~~~~~~p~~~~k~l~~ 343 (350)
T PRK10880 308 VSSFTGCMD---EGNGLWYNLAQPPSVGLAAPVERLLQQ 343 (350)
T ss_pred ccccccccC---CcCCeEechHHhcccCCcHHHHHHHHH
Confidence 321111111 123469999999886444444454443
No 101
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=95.73 E-value=0.014 Score=44.32 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=34.9
Q ss_pred ccEEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHHHhC
Q 029131 51 IVEVLMINSTSGPGLLFPKGGWENDETVEEAALREALEEAG 91 (198)
Q Consensus 51 ~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~EEtG 91 (198)
...|||+|-. ...+.+|||.+++||+-.+.+.|-+-|-.|
T Consensus 83 lPHvLLLQig-~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 83 LPHVLLLQIG-NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CCeEEEEeeC-CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 4578888853 346899999999999999999999999999
No 102
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.1 Score=42.17 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=69.3
Q ss_pred CCccEEEEEEecCCC-CE-----EecceecCCCCCHHHHHHHHHHHHhCceeeec---eeeEEEEeccCCccCCCCCCce
Q 029131 49 EKIVEVLMINSTSGP-GL-----LFPKGGWENDETVEEAALREALEEAGVRGHLK---EFLGYYDFKSKTLQDEFSPEGL 119 (198)
Q Consensus 49 ~~~~~vLLv~r~~~~-~W-----~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~---~~l~~~~~~~~~~~~~~~~~~~ 119 (198)
.+..++-+-||.+.. .| -..+|++--|-...++|+.|..||+.+..... ..-|..+|.......... .
T Consensus 145 ~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~---p 221 (306)
T KOG4313|consen 145 LGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLF---P 221 (306)
T ss_pred cCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccC---c
Confidence 345778877776632 24 35789999999999999999999999987433 334445544322222221 2
Q ss_pred EEEEEEEEEecccccCCC-CCcccceEEEehhHHHHhc
Q 029131 120 CKAAMFALLVKEELESWP-EQSTRQRSWLTVPEAIECC 156 (198)
Q Consensus 120 ~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~~ 156 (198)
...++|.+.++....+.+ +.|...+..++..+..+.+
T Consensus 222 e~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 222 ETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred cceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence 357888888765544333 4577777888888776643
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=95.10 E-value=0.06 Score=44.57 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=59.8
Q ss_pred EEecceecCCCCCHHHHHHHHHHHHhCceeeec--eeeEEEEeccCCccCCCCCCceEEEEEEEEEecccc------cCC
Q 029131 65 LLFPKGGWENDETVEEAALREALEEAGVRGHLK--EFLGYYDFKSKTLQDEFSPEGLCKAAMFALLVKEEL------ESW 136 (198)
Q Consensus 65 W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~ 136 (198)
-+|-.|.|+..-+..+-|.||..||+|+++... +.+..|..-.... -....+|+++++.-. -..
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~S--------G~~QTmfy~eVTdA~rsgpGgg~~ 357 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQS--------GDTQTMFYVEVTDARRSGPGGGEK 357 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCc--------CCeeEEEEEEeehhhccCCCCCcc
Confidence 456689999889999999999999999987654 4444442222111 115677878766432 122
Q ss_pred CCCcccceEEEehhHHHHhcCChH
Q 029131 137 PEQSTRQRSWLTVPEAIECCRHPW 160 (198)
Q Consensus 137 ~~~e~~~~~W~~~~e~~~~~~~~~ 160 (198)
.++|..+..-+++++++.+...+.
T Consensus 358 ee~E~IEvv~lsle~a~~~~~q~~ 381 (405)
T KOG4432|consen 358 EEDEDIEVVRLSLEDAPSLYRQHN 381 (405)
T ss_pred cccceeeEEEechhhhhHHHhccC
Confidence 345777888899999998865433
No 104
>PF14443 DBC1: DBC1
Probab=91.20 E-value=1.1 Score=32.59 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=32.0
Q ss_pred ccEEEEEEecC-----CCCEE--ecceecCC-CCCHHHHHHHHHHHHhCceeeec
Q 029131 51 IVEVLMINSTS-----GPGLL--FPKGGWEN-DETVEEAALREALEEAGVRGHLK 97 (198)
Q Consensus 51 ~~~vLLv~r~~-----~~~W~--lPgG~ve~-gEs~~eaa~REl~EEtGl~~~~~ 97 (198)
.+++|+.++.+ +|.|. |=||-... ...+..+|+|-+++-||++.+.-
T Consensus 7 ~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~C 61 (126)
T PF14443_consen 7 LLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNC 61 (126)
T ss_pred heeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhc
Confidence 45777776554 34563 23444443 34688999999999999987643
No 105
>PRK13910 DNA glycosylase MutY; Provisional
Probab=88.12 E-value=7.9 Score=32.34 Aligned_cols=25 Identities=4% Similarity=-0.075 Sum_probs=16.5
Q ss_pred ceEEEehhHHHHhcCChHHHHHHHH
Q 029131 143 QRSWLTVPEAIECCRHPWMQEALEK 167 (198)
Q Consensus 143 ~~~W~~~~e~~~~~~~~~~~~~l~~ 167 (198)
..+|++++++.++.....++.+++.
T Consensus 256 ~~~w~~~~~~~~~~~p~~~~k~~~~ 280 (289)
T PRK13910 256 PIRFYSLKDLETLPISSMTLKILNF 280 (289)
T ss_pred cceEecHHHhhhcCCcHHHHHHHHH
Confidence 4489999999886544444455444
No 106
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=86.13 E-value=5.2 Score=32.72 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCccEEEEEEecCCCCEEecceecCCCCCHHHHHHHH-HHHHhCceeeeceeeEEEEeccCC
Q 029131 49 EKIVEVLMINSTSGPGLLFPKGGWENDETVEEAALRE-ALEEAGVRGHLKEFLGYYDFKSKT 109 (198)
Q Consensus 49 ~~~~~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~RE-l~EEtGl~~~~~~~l~~~~~~~~~ 109 (198)
+++.+||-+..... +|.|-.++.-...++-+|. +.+.|+..+..++++.+|-...+.
T Consensus 34 ~~~p~VLtV~q~~a----LP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~ 91 (322)
T COG4111 34 DGGPRVLTVRQGAA----LPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRR 91 (322)
T ss_pred CCCceEEEeccccc----CCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhcccccc
Confidence 35678998876543 9999999888777777776 566789888888888776555444
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=76.69 E-value=5.3 Score=24.89 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=21.4
Q ss_pred EEEEEEecCCCCEEecceecCCCCCHHHHHHHHHHH
Q 029131 53 EVLMINSTSGPGLLFPKGGWENDETVEEAALREALE 88 (198)
Q Consensus 53 ~vLLv~r~~~~~W~lPgG~ve~gEs~~eaa~REl~E 88 (198)
.+-+.......+|.+|||.+-.+- -.|+|..+|
T Consensus 12 ~itl~ys~~~~GWl~Pgg~vi~NP---lkAqR~AE~ 44 (60)
T PF07026_consen 12 TITLPYSHFKNGWLMPGGKVITNP---LKAQRLAEE 44 (60)
T ss_pred EEEEEEEeccceeecCCCeeEcCH---HHHHHHHHH
Confidence 345555555678999999998653 345565544
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=61.96 E-value=7.9 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=12.0
Q ss_pred cceecCCCCCHHHHHHHHHHHHh
Q 029131 68 PKGGWENDETVEEAALREALEEA 90 (198)
Q Consensus 68 PgG~ve~gEs~~eaa~REl~EEt 90 (198)
-||-..+|--+..+++||+-||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 47777788888899999999995
No 109
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=44.20 E-value=66 Score=27.57 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=43.7
Q ss_pred EEEEEEecCCC----CEEecceecCCCCCHHHHHHHHHHHHhCceeeeceeeEEEEeccCCccCCCCCCceEEEEE-EEE
Q 029131 53 EVLMINSTSGP----GLLFPKGGWENDETVEEAALREALEEAGVRGHLKEFLGYYDFKSKTLQDEFSPEGLCKAAM-FAL 127 (198)
Q Consensus 53 ~vLLv~r~~~~----~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 127 (198)
+++|.+|...+ .|+||...... . ..+..-+.|+.. +.++.+.+.++.. +..+ |.+
T Consensus 248 ~~~l~kr~~~gl~~gl~~fP~~e~~~--~-----~~~~~~~~~~~~---~~~~~~~H~fth~----------~l~i~~~a 307 (342)
T COG1194 248 EVLLEKRPEKGLLGGLWCFPQFEDEA--D-----LLDWLAADGLAA---EPLGAFRHTFTHF----------RLTIELRA 307 (342)
T ss_pred chhhhhCcccCceecccccccccccc--h-----hhhHhhhccccc---ccccceeeeeeEE----------EEEEEEEe
Confidence 68888887643 59999865544 2 222233444433 3444444443321 2222 222
Q ss_pred EecccccCCCCCcccceEEEehhHHHHhcCChHHHHHHH
Q 029131 128 LVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALE 166 (198)
Q Consensus 128 ~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~~l~ 166 (198)
.... ... +..|++.+++...-...-+..++.
T Consensus 308 ~~~~-------~~~-~~~w~~~~~~~~~~l~~p~~k~l~ 338 (342)
T COG1194 308 SASL-------VLS-DGRWYNLSDLESIGLPAPVKKLLQ 338 (342)
T ss_pred eccc-------CCC-CceeccccccccccccHHHHHHHH
Confidence 2111 223 788999999986533333344443
No 110
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=41.04 E-value=74 Score=26.32 Aligned_cols=17 Identities=29% Similarity=0.381 Sum_probs=13.4
Q ss_pred EEEEEEecCC----CCEEecc
Q 029131 53 EVLMINSTSG----PGLLFPK 69 (198)
Q Consensus 53 ~vLLv~r~~~----~~W~lPg 69 (198)
++||.+|..+ +.|+||+
T Consensus 240 ~~~~~~r~~~~~~~gl~~~p~ 260 (275)
T TIGR01084 240 EVLLEQRPEKGLWGGLYCFPQ 260 (275)
T ss_pred eEEEEeCCCCchhhccccCCC
Confidence 7899888764 4599997
No 111
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=36.06 E-value=11 Score=32.04 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.6
Q ss_pred CCCEEecceecCCCCCHHHHHHHHHHHHhCceee
Q 029131 62 GPGLLFPKGGWENDETVEEAALREALEEAGVRGH 95 (198)
Q Consensus 62 ~~~W~lPgG~ve~gEs~~eaa~REl~EEtGl~~~ 95 (198)
...|.||.|++..||-+.++++|+..||+|+...
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 263 PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred cccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 3459999999999999999999999999998654
No 112
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=29.34 E-value=32 Score=29.31 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=21.0
Q ss_pred ceecCCCCCHHHHHHHHHHHHhCcee
Q 029131 69 KGGWENDETVEEAALREALEEAGVRG 94 (198)
Q Consensus 69 gG~ve~gEs~~eaa~REl~EEtGl~~ 94 (198)
+=.|+..+-..+.+.||++||+++-+
T Consensus 406 KL~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 406 KLGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred hhCCChhhcccHHHHHHHHHhcCcce
Confidence 33577888888999999999999743
No 113
>PF13014 KH_3: KH domain
Probab=23.57 E-value=76 Score=17.83 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.8
Q ss_pred HHHHHHHHhCceeeece
Q 029131 82 ALREALEEAGVRGHLKE 98 (198)
Q Consensus 82 a~REl~EEtGl~~~~~~ 98 (198)
-++++.+|||..+....
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 37999999999887554
No 114
>PHA02754 hypothetical protein; Provisional
Probab=20.61 E-value=1.1e+02 Score=19.16 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.3
Q ss_pred ehhHHHHhcCChHHHHHHHHHHHHHHhhc
Q 029131 148 TVPEAIECCRHPWMQEALEKGFLKLYADH 176 (198)
Q Consensus 148 ~~~e~~~~~~~~~~~~~l~~~~~~~l~~~ 176 (198)
..+|+++++....+++++.+ +..+|...
T Consensus 3 kAeEi~k~i~eK~Fke~MRe-lkD~LSe~ 30 (67)
T PHA02754 3 KAEEIPKAIMEKDFKEAMRE-LKDILSEA 30 (67)
T ss_pred cHHHHHHHHHHhHHHHHHHH-HHHHHhhC
Confidence 45788898888999999999 88888765
Done!