BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029132
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QI5|A Chain A, Crystal Structure Of Human Alkyladenine Dna Glycosylase In
Complex With 3,N4-Ethenocystosine Containing Duplex Dna
pdb|3QI5|B Chain B, Crystal Structure Of Human Alkyladenine Dna Glycosylase In
Complex With 3,N4-Ethenocystosine Containing Duplex Dna
pdb|3UBY|A Chain A, Crystal Structure Of Human Alklyadenine Dna Glycosylase In
A Lower And Higher-Affinity Complex With Dna
pdb|3UBY|B Chain B, Crystal Structure Of Human Alklyadenine Dna Glycosylase In
A Lower And Higher-Affinity Complex With Dna
Length = 219
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
MT L FF A+ LA LG+ L R ++ +I E EAY P D A H R G
Sbjct: 4 MTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++Q R+ L
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPLYMPGGLEILDGP--KPEKILIGPR 163
+ L +GP K+ QAL I+ + L + + GP E ++
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAA 181
Query: 164 VGIEYALPEHVNALWRFAIAGTPWIS 189
E RF + G+PW+S
Sbjct: 182 RVGVGHAGEWARKPLRFYVRGSPWVS 207
>pdb|1BNK|A Chain A, Human 3-Methyladenine Dna Glycosylase Complexed To Dna
Length = 216
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
+T L FF A+ LA LG+ L R ++ +I E EAY P D A H R G
Sbjct: 4 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++ R+QL
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRHVRSQL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPLYMPGGLEILDGP--KPEKILIGPR 163
+ L +GP K+ QAL I+ + L + + GP E ++
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAA 181
Query: 164 VGIEYALPEHVNALWRFAIAGTPWIS 189
E RF + G+PW+S
Sbjct: 182 RVGVGHAGEWARKPLRFYVRGSPWVS 207
>pdb|1F4R|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase
Complexed With 1,N6-Ethenoadenine-Dna
pdb|1F6O|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase
Complexed With Dna
Length = 219
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
+T L FF A+ LA LG+ L R ++ +I E EAY P D A H R G
Sbjct: 4 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++Q R+ L
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPLYMPGGLEILDGP--KPEKILIGPR 163
+ L +GP K+ QAL I+ + L + + GP E ++
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAA 181
Query: 164 VGIEYALPEHVNALWRFAIAGTPWIS 189
E RF + G+PW+S
Sbjct: 182 RVGVGHAGEWARKPLRFYVRGSPWVS 207
>pdb|1EWN|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase
Complexed With 1,N6-Ethenoadenine-Dna
Length = 219
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 1 MTILPHHFFQIDALDLAPRLLGKFLRR-----DDVLLQITEVEAYR-PNDSACHGRFG-I 53
+T L FF A+ LA LG+ L R ++ +I E +AY P D A H R G
Sbjct: 4 LTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQ 63
Query: 54 TARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL 113
T R +F G YVY+ YG++ +N+ + +G GA VL+R+ P+ GL+T++Q R+ L
Sbjct: 64 TPRNRGMFMKPGTLYVYIIYGMYFCMNISS--QGDGACVLLRALEPLEGLETMRQLRSTL 121
Query: 114 TEKPV--------LLTGPGKVGQALGISTEWSNHPLYMPGGLEILDGP--KPEKILIGPR 163
+ L +GP K+ QAL I+ + L + + GP E ++
Sbjct: 122 RKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAA 181
Query: 164 VGIEYALPEHVNALWRFAIAGTPWIS 189
E RF + G+PW+S
Sbjct: 182 RVGVGHAGEWARKPLRFYVRGSPWVS 207
>pdb|1JOB|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P3121
Length = 162
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 LIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWS 137
LIR V L IQQ++ Q V+L PGKV G S W+
Sbjct: 44 LIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVT-ITGTSQNWT 87
>pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
Length = 460
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 51 FGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRR 110
+G TA FG G Y Y + LN++++ E +GA L +C + T
Sbjct: 154 YGRVIETARKFGEGFFGYNY---STNAALNIISESEVMGADSLTPTCDTDNDQTTCDNLT 210
Query: 111 AQL 113
QL
Sbjct: 211 YQL 213
>pdb|1F35|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein
pdb|1F35|B Chain B, Crystal Structure Of Murine Olfactory Marker Protein
pdb|1JOD|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P43212
pdb|1JOD|B Chain B, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P43212
Length = 162
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 LIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWS 137
LIR V L IQQ++ Q V+L PGKV G S W+
Sbjct: 44 LIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVT-ITGTSQNWT 87
>pdb|1JYT|A Chain A, Solution Structure Of Olfactory Marker Protein From Rat
pdb|1ZRI|A Chain A, Noe-Based Solution Structure With Dipolar Coupling
Restraints Of Rat Omp (Olfactory Marker Protein)
Length = 163
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 LIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWS 137
L+R V L IQQ++ Q V+L PGKV G S W+
Sbjct: 45 LLRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVT-ITGTSQNWT 88
>pdb|2YV7|A Chain A, Crystal Structure Of The Clic Homolog From Drosophila
Melanogaster
Length = 260
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 153 PKPEKILIGPRVGIEYALPEHVNALWRF 180
P+ + I + + +++ +P H+ ALWR+
Sbjct: 180 PRLQHIRVAGKYFVDFEIPTHLTALWRY 207
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 123 PGKVGQAL---GISTEWSNHPLYMPGGLEILDGPKPE----KILIGPR 163
P K+ Q L GI+ + ++ +PGG+ +L G E +IL+GPR
Sbjct: 383 PEKIAQFLKESGIAEKVNHRKAILPGGVAVLSGKLQELSGWEILVGPR 430
>pdb|2CX5|A Chain A, Crystal Structure Of A Putative Trans-Editing Enzyme For
Prolyl Trna Synthetase
pdb|2CX5|B Chain B, Crystal Structure Of A Putative Trans-Editing Enzyme For
Prolyl Trna Synthetase
pdb|2CX5|C Chain C, Crystal Structure Of A Putative Trans-Editing Enzyme For
Prolyl Trna Synthetase
pdb|2CX5|D Chain D, Crystal Structure Of A Putative Trans-Editing Enzyme For
Prolyl Trna Synthetase
pdb|2Z0K|A Chain A, Crystal Structure Of Prox-Alasa Complex From T.
Thermophilus
pdb|2Z0X|A Chain A, Crystal Structure Of Prox-cyssa Complex From T.
Thermophilus
Length = 158
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 141 LYMPGGLEILDGPKPEKILIGPRVGIEYALPEHVNALWRFAIAGTPWISAPKNTLMP 197
L++ G LD K +++ GP + A PE V L FAI G P + NT +P
Sbjct: 62 LFLVSGKNRLDLGKATRLVGGP---LRQATPEEVRELTGFAIGGVPPVG--HNTPLP 113
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
Length = 461
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 86 EGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPG 145
+ +GA +L+ S +SG T+ +R A+ + V+ G V A +S W+ PLY+P
Sbjct: 371 QDLGANILVFS---MSG--TLARRIAKFRPRGVVYVGTPNVRVARSLSIVWALEPLYIPA 425
Query: 146 -----GLEIL 150
GLE L
Sbjct: 426 ENYEEGLEKL 435
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 108 QRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGLEIL 150
QR Q+ ++LTG G + + LG SN+ L GG++I+
Sbjct: 267 QRTIQVENSHLILTGAGALNKVLGREVYTSNNQL---GGIQIM 306
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 92 VLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGLEIL 150
V RS + L + QR Q+ +P++LTG + + LG SN L GG +I+
Sbjct: 256 VTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQL---GGTQIM 311
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 26.9 bits (58), Expect = 8.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 92 VLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGLEI 149
V RS + L + QR Q+ +P++LTG + + LG SN L GG +I
Sbjct: 247 VTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKXLGREVYTSNLQL---GGTQI 301
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 92 VLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGLEI 149
V RS + L + QR Q+ +P++LTG + + LG SN L GG +I
Sbjct: 300 VTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKXLGREVYTSNLQL---GGTQI 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,557,728
Number of Sequences: 62578
Number of extensions: 277808
Number of successful extensions: 568
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 26
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)