Query 029132
Match_columns 198
No_of_seqs 153 out of 748
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uby_A DNA-3-methyladenine gly 100.0 2.2E-86 7.6E-91 565.4 18.1 191 2-195 5-213 (219)
2 2xzm_4 40S ribosomal protein S 26.4 31 0.0011 29.8 2.2 37 16-52 40-86 (265)
3 1g9g_A Cellulase CEL48F; proce 21.0 22 0.00074 34.0 0.2 11 71-81 148-158 (629)
4 4fus_A RTX toxins and related 20.9 21 0.00072 34.4 0.1 11 71-81 165-175 (695)
5 1l1y_A Cellobiohydrolase; alph 20.1 22 0.00076 34.1 0.1 10 72-81 179-188 (678)
6 3j20_A 30S ribosomal protein S 17.4 27 0.00092 28.8 -0.1 35 17-52 28-65 (198)
7 3kc2_A Uncharacterized protein 13.7 50 0.0017 28.7 0.7 45 91-135 22-75 (352)
8 3dh1_A TRNA-specific adenosine 10.9 34 0.0011 27.6 -1.2 39 8-50 28-77 (189)
9 1k3s_A SIGE; type III, secreti 10.8 1E+02 0.0036 23.1 1.5 28 124-151 6-35 (113)
10 1d3b_A Protein (small nuclear 10.2 3.1E+02 0.01 18.3 3.8 30 12-41 5-39 (75)
No 1
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=100.00 E-value=2.2e-86 Score=565.43 Aligned_cols=191 Identities=35% Similarity=0.539 Sum_probs=172.4
Q ss_pred CCCCcccCCCCHHhHHhhhcCCeEEec---C--eeEEEEEeeccC-CCCCccccCCC-CCCCcccccCCCCeeEEEEecC
Q 029132 2 TILPHHFFQIDALDLAPRLLGKFLRRD---D--VLLQITEVEAYR-PNDSACHGRFG-ITARTAPVFGPGGLAYVYLCYG 74 (198)
Q Consensus 2 ~~l~~~Ff~~~~~~vA~~LLG~~Lv~~---~--~~grIVEtEAY~-~~D~AsHa~~g-rT~Rn~~mfg~~G~~YVY~~YG 74 (198)
++|+++||++|+++||++||||+||++ + ++|||||||||+ ++|||||||+| +|+||++||++|||+|||+|||
T Consensus 5 ~~L~~~Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G~~D~AsHa~~GrrT~Rn~~MFg~pG~~YVY~~YG 84 (219)
T 3uby_A 5 TRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYG 84 (219)
T ss_dssp CBCCHHHHCSCHHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEECSTTCTTSTTGGGCCCSGGGGGGSSTTBEEEEEETT
T ss_pred ccCCHHHHCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccCCCCccccccCCCCCcccHHhcCCCcEEEEEEecC
Confidence 579999999999999999999999995 3 689999999999 89999999998 6999999999999999999999
Q ss_pred ceeEEEEEeCCCCCccEEEeeeccccCCHHHHHHHhccc--------CCCCcccCChhHHHHHhcCCcccCCCCCCCCCc
Q 029132 75 LHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQL--------TEKPVLLTGPGKVGQALGISTEWSNHPLYMPGG 146 (198)
Q Consensus 75 mh~clNvvt~~~g~~~aVLIRA~eP~~G~~~m~~~R~~~--------~~~~~L~nGPGkL~~AlgI~~~~~g~~l~~~~~ 146 (198)
|||||||||+. .++||||||+||++|+|.|++||+.+ ....+|||||||||||||||+++||.||++++.
T Consensus 85 mh~clNvv~~~--~g~aVLIRA~EP~~G~e~m~~rR~~~~~~~~~~~~~~~~L~~GPGkL~~ALgI~~~~ng~dL~~~~~ 162 (219)
T 3uby_A 85 MYFCMNISSQG--DGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEA 162 (219)
T ss_dssp TEEEEEEECSS--TTCEEEEEEEEEEECHHHHHHHHHHC--------CCGGGTSSSHHHHHHHTTCCGGGTTCBTTTCSS
T ss_pred cEEEEEEEecC--CCCEEEEeccccCccHHHHHHhcccccccccccccccchhcCCHHHHHHHhCCCHHHCCCccCCCCc
Confidence 99999999965 55899999999999999999999632 124689999999999999999999999997667
Q ss_pred eEEcCCCC---CCceeecceeeecCCCccccCceeeEEECCCCeecCCCCCC
Q 029132 147 LEILDGPK---PEKILIGPRVGIEYALPEHVNALWRFAIAGTPWISAPKNTL 195 (198)
Q Consensus 147 l~l~~~~~---~~~I~~t~RIGI~~a~~e~~~~pwRf~i~gnp~VS~~r~~~ 195 (198)
|||+++.. +.+|++||||||++++ ||+|+||||||+||||||++|+..
T Consensus 163 l~l~~~~~~~~~~~I~~~pRIGI~~ag-e~~~~PwRF~i~g~p~VS~~r~~~ 213 (219)
T 3uby_A 163 VWLERGPLEPSEPAVVAAARVGVGHAG-EWARKPLRFYVRGSPWVSVVDRVA 213 (219)
T ss_dssp EEEECCSCCBCGGGEEEECCSCC--CT-TTTTSCCEEEETTCTTCSCCCTTT
T ss_pred eEEecCCCCCCCCCEEEeCcccCCCCc-ccccCCceeEeCCCCeECCCcccc
Confidence 99998642 3479999999999996 799999999999999999998764
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=26.36 E-value=31 Score=29.77 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=28.6
Q ss_pred HHhhhcCCeEEec---------CeeEEEEEeeccC-CCCCccccCCC
Q 029132 16 LAPRLLGKFLRRD---------DVLLQITEVEAYR-PNDSACHGRFG 52 (198)
Q Consensus 16 vA~~LLG~~Lv~~---------~~~grIVEtEAY~-~~D~AsHa~~g 52 (198)
....-+|++|+-+ .+.||++|+=.+. .+|..+|+|+.
T Consensus 40 F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK 86 (265)
T 2xzm_4 40 FSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRK 86 (265)
T ss_dssp SCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCE
T ss_pred cCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceE
Confidence 3445589999973 3679999999998 88865787764
No 3
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=21.01 E-value=22 Score=33.99 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=9.5
Q ss_pred EecCceeEEEE
Q 029132 71 LCYGLHTMLNV 81 (198)
Q Consensus 71 ~~YGmh~clNv 81 (198)
-+|||||++.|
T Consensus 148 ~~Y~MHWLlDV 158 (629)
T 1g9g_A 148 MLYGMHWILDV 158 (629)
T ss_dssp SCCSCBSEEET
T ss_pred cceeeeeeeec
Confidence 38999999976
No 4
>4fus_A RTX toxins and related Ca2+-binding protein; glycosyl hydrolase, GH48, hydrolase; HET: OHI CBI GOL; 1.75A {Hahella chejuensis}
Probab=20.88 E-value=21 Score=34.44 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=9.6
Q ss_pred EecCceeEEEE
Q 029132 71 LCYGLHTMLNV 81 (198)
Q Consensus 71 ~~YGmh~clNv 81 (198)
-+|+|||++.|
T Consensus 165 ~iY~MHWLlDV 175 (695)
T 4fus_A 165 DVYGMHWLLDM 175 (695)
T ss_dssp CCCSCCSEEET
T ss_pred cceeeeeeeec
Confidence 38999999986
No 5
>1l1y_A Cellobiohydrolase; alpha/alpha barrel; HET: BGC; 2.40A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1l2a_A*
Probab=20.10 E-value=22 Score=34.10 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=9.1
Q ss_pred ecCceeEEEE
Q 029132 72 CYGLHTMLNV 81 (198)
Q Consensus 72 ~YGmh~clNv 81 (198)
+|||||++.|
T Consensus 179 ~Y~MHWL~DV 188 (678)
T 1l1y_A 179 MYLMHWLMDV 188 (678)
T ss_dssp CCCCCSEEET
T ss_pred cceeeeeeec
Confidence 8999999976
No 6
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=17.38 E-value=27 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=27.0
Q ss_pred HhhhcCCeEEec--CeeEEEEEeeccC-CCCCccccCCC
Q 029132 17 APRLLGKFLRRD--DVLLQITEVEAYR-PNDSACHGRFG 52 (198)
Q Consensus 17 A~~LLG~~Lv~~--~~~grIVEtEAY~-~~D~AsHa~~g 52 (198)
...-+|++++-+ .+.||++|+=.+. .+|. +|+|+.
T Consensus 28 ~~~~iG~T~~~~~~~l~GRv~EvsL~DL~~d~-~~~~~K 65 (198)
T 3j20_A 28 GGVEVGLTPADDPEKVLNRVVEVTLKDVTGDF-TKSHVK 65 (198)
T ss_dssp SCCCCCEEEEESSSCCSSCEEEECCCSSTTHH-HHHCCC
T ss_pred CCceeEEEEccCcccccCeEEEEEHHHhcCCh-hhheEE
Confidence 344579999976 4889999999997 7776 666754
No 7
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=13.72 E-value=50 Score=28.69 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=29.2
Q ss_pred EEEeeeccccCCHH-HHHHHhcccCCCCcccCChh--------HHHHHhcCCcc
Q 029132 91 AVLIRSCAPVSGLK-TIQQRRAQLTEKPVLLTGPG--------KVGQALGISTE 135 (198)
Q Consensus 91 aVLIRA~eP~~G~~-~m~~~R~~~~~~~~L~nGPG--------kL~~AlgI~~~ 135 (198)
+||.++-+|+.|.. .++..|.....-.-+||+++ +|.+.|||+.+
T Consensus 22 Gvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~ 75 (352)
T 3kc2_A 22 GVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS 75 (352)
T ss_dssp TTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCC
T ss_pred CeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCC
Confidence 46788888988875 55555533222236888864 56667999653
No 8
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=10.94 E-value=34 Score=27.59 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=25.7
Q ss_pred cCCCCHHhHHhh-------hcCCeEEecCeeEEEEEeeccCC----CCCccccC
Q 029132 8 FFQIDALDLAPR-------LLGKFLRRDDVLLQITEVEAYRP----NDSACHGR 50 (198)
Q Consensus 8 Ff~~~~~~vA~~-------LLG~~Lv~~~~~grIVEtEAY~~----~D~AsHa~ 50 (198)
+|-+-++++|+. -.|++||.+ |+|+ .++|.. .|+..||=
T Consensus 28 ~~M~~Al~lA~~a~~~~~~pVGAVIV~~---g~II-a~G~N~~~~~~~~t~HAE 77 (189)
T 3dh1_A 28 KWMEEAMHMAKEALENTEVPVGCLMVYN---NEVV-GKGRNEVNQTKNATRHAE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCEEEEEET---TEEE-EEEECCHHHHTCTTCCHH
T ss_pred HHHHHHHHHHHHhhhCCCCCEEEEEEEC---CEEE-EEEeCCCCccCCCcCcHH
Confidence 344456677765 477888864 5666 467763 79999964
No 9
>1k3s_A SIGE; type III, secretion, chaperone; 1.90A {Salmonella enterica} SCOP: d.198.1.1
Probab=10.77 E-value=1e+02 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=15.4
Q ss_pred hHHHHHhcCCc-ccCCCCCCCCC-ceEEcC
Q 029132 124 GKVGQALGIST-EWSNHPLYMPG-GLEILD 151 (198)
Q Consensus 124 GkL~~AlgI~~-~~~g~~l~~~~-~l~l~~ 151 (198)
-+||.||||+. .++-.-+.+++ .+|+..
T Consensus 6 ~~ly~ALGl~~~~depal~iddd~~IYf~e 35 (113)
T 1k3s_A 6 NRLYDALGLDAPEDEPLLIIDDGIQVYFNE 35 (113)
T ss_dssp HHHHHHTTCC----CCCCEEETTEEEEEEE
T ss_pred HHHHHHhCCCCCCCCceEEecCCeEEEEcc
Confidence 37999999994 33333333443 456553
No 10
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=10.23 E-value=3.1e+02 Score=18.27 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=24.3
Q ss_pred CHHhHHhhhcCCeEEec-----CeeEEEEEeeccC
Q 029132 12 DALDLAPRLLGKFLRRD-----DVLLQITEVEAYR 41 (198)
Q Consensus 12 ~~~~vA~~LLG~~Lv~~-----~~~grIVEtEAY~ 41 (198)
.+..+-++++|+.+..+ ...|.++..+.|+
T Consensus 5 ~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~M 39 (75)
T 1d3b_A 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNM 39 (75)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTC
T ss_pred CHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccce
Confidence 35677889999888654 2679999999998
Done!