BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029133
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 75.9 bits (185), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 638 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIA 697
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
++GPNG GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 698 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 738
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+ + IA +G V F + +
Sbjct: 436 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 488
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
V+ +H +DG ++ L ++ G E ++ L FG T P+ LSG
Sbjct: 489 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSG 545
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 75.9 bits (185), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 644 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIA 703
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
++GPNG GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+ + IA +G V F + +
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 494
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
V+ +H +DG ++ L ++ G E ++ L FG T P+ LSG
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSG 551
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 75.9 bits (185), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 644 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIA 703
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
++GPNG GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744
Score = 43.5 bits (101), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+++ IA +G V F + +
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEE 494
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
V+ +H +DG ++ L ++ G E ++ L FG T + P+ LSG
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEMIAMPISALSG 551
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
G +SFS+ F G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G
Sbjct: 37 GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 112 TVFRSAKVRIAVFSQH 127
+ S RI+ SQ+
Sbjct: 94 KIKHSG--RISFCSQN 107
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P ++ + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 14 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 113 VFRSAK 118
+ K
Sbjct: 74 LLLDGK 79
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
G +SFS+ F G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G
Sbjct: 37 GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 112 TVFRSAKV 119
+ S ++
Sbjct: 94 KIKHSGRI 101
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 41 KFEFPTPD-DRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99
K E+ T + + ++ + +F GG + K++NF I+ +A+ G G GK+++L
Sbjct: 4 KQEYKTLEYNLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL 63
Query: 100 KLIAGELQPSSGTVFRSAKV 119
+I GEL+PS G + S ++
Sbjct: 64 MMIMGELEPSEGKIKHSGRI 83
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
G I F YPGG + ++F I + ++GP+G GK+TIL+LIAG +P+ G
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 149
V+ K + Q GL + L M + V
Sbjct: 71 DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
+F GG + K++NF I+ +A+ G G GK+++L +I GEL+PS G + S ++
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 71
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
+F GG + K++NF I+ +A+ G G GK+++L +I GEL+PS G + S ++
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 71
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
++F G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G + S R
Sbjct: 44 SNFSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 100
Query: 121 IAVFSQH 127
I+ SQ+
Sbjct: 101 ISFCSQN 107
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P + + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLLY 141
V + + + H H + PLL+
Sbjct: 76 VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLF 105
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P + + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLLY 141
V + + + H H + PLL+
Sbjct: 76 VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLF 105
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P + + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLLY 141
V + + + H H + PLL+
Sbjct: 76 VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLF 105
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G + S ++
Sbjct: 50 GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G + S ++
Sbjct: 50 GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+SFS G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G +
Sbjct: 41 VSFSHLCL--VGNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 116 SAKV 119
S +V
Sbjct: 98 SGRV 101
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+SFS G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G +
Sbjct: 41 VSFSHLCL--VGNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 116 SAKV 119
S +V
Sbjct: 98 SGRV 101
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV 101
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 56 ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ F + F YP P +F++ + I S A+VGP+G GKST+L L+ P+SGT+
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 56 ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ F + F YP P +F++ + I S A+VGP+G GKST+L L+ P+SGT+
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+S + F Y LF+ LNF ++ +A++G NG GKST+L L+ G +P G +
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 26/104 (25%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
I F + F Y G ++++F + +A+VGP+G GKSTIL+L+ SSG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-- 111
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159
+DG D+S V + LR+H+G
Sbjct: 112 ------------RIDGQDISQ------------VTQASLRSHIG 131
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 56 ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ FS F YP P + + L+ + +A+VG +G GKST+++L+ P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 114 FRSAK 118
F K
Sbjct: 1091 FLDGK 1095
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 47 PDDRPGPPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
PD+ G + F + F YP + K LN + +A+VG +G GKST ++L+
Sbjct: 381 PDNIQGN--LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 105 ELQPSSGTV------FRSAKVR-----IAVFSQHHV 129
P G V R+ VR I V SQ V
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 56 ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ FS F YP P + + L+ + +A+VG +G GKST+++L+ P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 114 FRSAK 118
F K
Sbjct: 1091 FLDGK 1095
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 47 PDDRPGPPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
PD+ G + F + F YP + K LN + +A+VG +G GKST ++L+
Sbjct: 381 PDNIQGN--LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 105 ELQPSSGTV------FRSAKVR-----IAVFSQHHV 129
P G V R+ VR I V SQ V
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
L +++ I +A++GPNG GKST+L+L+ G L PS G
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 56 ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ F + F YP P + K L+F ++ +A+VGP+G GKST++ L+ G +
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 114 F 114
F
Sbjct: 1137 F 1137
Score = 35.4 bits (80), Expect = 0.020, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 56 ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
I+ + F YP P + + +N ++ +A+VG +G GKSTI+ L+
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL 464
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+ + ++ Y G K +N I A++G NG+GKST+ + G L+PSSG +
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG G GKST+ KLI P +G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 40.0 bits (92), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I +VGPNGIGK+T +K++AG +P+ G V
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Score = 35.4 bits (80), Expect = 0.018, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ +VGPNG GK+T +K++AG+L P+
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPN 144
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
G + K ++F I+ ++GPNG GK+T L++I+ ++PSSG V
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
N+N I +A++GP+G GKST+L IAG +P+SG ++ K
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I +VGPNGIGK+T +K++AG +P+ G V
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ +VGPNG GK+T +K++AG+L P+
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPN 130
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
G + N+N I+ R ++GP+G GK+T +++IAG PS+G ++
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
G ++ K++N I + VGP+G GKST+L++IAG +SG +F K
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
G + N+N I+ R ++GP+G GK+T +++IAG PS+G ++
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
G ++ K++N I + VGP+G GKST+L++IAG +SG +F K
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
G ++ K++N I + VGP+G GKST+L++IAG +SG +F K
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 16 SLVQSRIKALERMGHV---DEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILF 72
+++Q + + ER+ + +E +DPD + R I F + F Y +
Sbjct: 318 NMIQMALASAERIFEILDLEEEKDDPD------AVELREVRGEIEFKNVWFSYDKKKPVL 371
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
K++ F I ++A+VGP G GK+TI+ L+
Sbjct: 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I + SF Y G +L K++N + +VG NG GK+T+LK++AG L ++G +F
Sbjct: 12 IELNSVSFRYNGDYVL-KDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIF 68
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 56 ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
+ F + +F YPG + +N+N I +A+VG +G GKSTI LI
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 56 ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
+ F + +F YPG + +N+N I +A+VG +G GKSTI LI
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I +VGPNGIGK+T +K +AG +P+ G +
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ +VGPNG GKST +K++AG+L P+
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPN 74
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
++S F Y + ++++F +S IA GP+G GKSTI L+ QP++G +
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+ D S GY P+L + + I+ + + GPNGIGK+T+LK I+ L+P G +
Sbjct: 11 LEIRDLSVGY-DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAV-FSQ 126
+N+N ++ ++ ++GPNG GK+T+L+ I+G L P SG +F + K+R + +S
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYST 78
Query: 127 HHVDGLDL--SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
+ + ++ + N ++Y+ G+ L + + + + +Y LS
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSA 131
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 57 SFSDASFGYPGGPILFKNLNFGIDLDSRI-AMVGPNGIGKSTILKLIAGELQPSSG 111
+FS S G + N+ G DS I M+G NG GK+T++KL+AG L+P G
Sbjct: 353 AFSYPSLKKTQGDFVL-NVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSG 111
+ +VG NGIGKST LK++AG+ +P+ G
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLG 132
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 56 ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
I FSD +F YP K++NF I + A+VG G GKSTI KL+
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 55 IISFSDASFGYP-GGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
+I + + Y G I++ KN+N I ++++GP+G GKST+L +I +P+ G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 112 TVF 114
V+
Sbjct: 61 EVY 63
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
LN I + ++GP+G GK+T L++IAG +P+ G ++
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 70
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 23/27 (85%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSG 111
+ ++G NG+GK+T+LK++AGE+ P+ G
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFG 54
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I ++GPNGIGK+T +++ GE+ G+V
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSV 325
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
LN I + ++GP+G GK+T L++IAG +P+ G ++
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 55 IISFSDASFGYP-GGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
++ + + Y G I++ KN+N I ++++GP+G GKST+L +I +P+ G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 112 TVF 114
V+
Sbjct: 61 EVY 63
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+A++GP+G GK+T L ++AG +P+SG ++
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
G P +N++ I+ + + G G GKST+L+++AG ++P+SG V
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 65
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
G P +N++ I+ + + G G GKST+L+++AG ++P+SG V
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 67
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
K+L+ I + ++GP+G GK+T L+ IAG +P+ G ++
Sbjct: 23 KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIY 64
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 56 ISFSDASFGY--PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+SF + F Y P+L +NF + S +A++G G GKST++ LI + P G V
Sbjct: 342 VSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 154
VD LD+ + L + VP++ +
Sbjct: 401 --------------EVDELDVRTVKLKDLRGHISAVPQETV 427
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+ ++GP+G GK+T L++IAG +PS G ++
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 56 ISFSDASFGYPGGPIL---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
I + + Y G + KN+N I +++ GP+G GKST L +I +P+ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 113 VF 114
V+
Sbjct: 62 VY 63
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
+ +++ +D + ++G +G GK+T+L+ +AG QP SG + S K +FS++
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT---IFSKN 72
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 76 NFGIDLDSRI-----AMVGPNGIGKSTILKLIAGELQPSSGTV 113
NF +++D + ++GP G GKS L+LIAG ++P G V
Sbjct: 13 NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV 55
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
++GPNG GKST++ +I G L+ G V+ K
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
++GPNG GKST++ +I G L+ G V+ K
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
++GPNG GKST++ +I G L+ G V+ K
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
NL+ ++ ++GP G GK+ L+LIAG P SG + K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK 62
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105
G + K +N + A++GPNG GKST+ K++AG+
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 56 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I SF Y PIL K++N I+ +A VG +G GKST++ LI +SG +
Sbjct: 340 IDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 114 F 114
Sbjct: 399 L 399
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGEL---QPSSGTVFRSAKVRIAVFSQ 126
LF NL FG + + RI MVG +G GK+T+L KL GE+ P+ G + + + F+
Sbjct: 8 LFSNL-FG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTV 65
Query: 127 HHVDGLDLSSNPLLYMMRCFPGV 149
V G D + + R GV
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 48 DDRPGPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99
D P ++ D + Y GG + +N++F I R+ ++G G GKST+L
Sbjct: 12 DIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGEL---QPSSGTVFRSAKVRIAVFSQ 126
LF NL FG + + RI MVG +G GK+T+L KL GE+ P+ G + + + F+
Sbjct: 8 LFSNL-FG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTV 65
Query: 127 HHVDGLDLSSNPLLYMMRCFPGV 149
V G D + + R GV
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 56 ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ D +F Y G P L +++F I +A+VG +G GKSTI L SG++
Sbjct: 342 VDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 168
+DG D+ L + R F V + HL + + N+A
Sbjct: 401 C--------------LDGHDVRDYKLTNLRRHFALVSQN---VHLFNDTIANNIA 438
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGE----LQPSSGT----VFRSAKVRIAVFSQHHVDGLDLSS 136
+A+VG +GKSTI IAGE ++ + G ++ SA+ F+ G+D+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 137 NPLLYMMR 144
P L +R
Sbjct: 66 EPFLAQIR 73
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGELQPSSGTV 113
LF NL FG + + RI MVG +G GK+T+L KL GE+ + T+
Sbjct: 8 LFSNL-FG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTI 49
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGE----LQPSSGT----VFRSAKVRIAVFSQHHVDGLDLSS 136
+A+VG +GKSTI IAGE ++ + G ++ SA+ F+ G+D+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 137 NPLLYMMR 144
P L +R
Sbjct: 86 EPFLAQIR 93
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 101 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 152
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 102 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 153
>pdb|2H92|A Chain A, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|B Chain B, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|C Chain C, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
Length = 219
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRS 116
IA+ GP GKSTI K +A EL +G ++R+
Sbjct: 6 IALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 86 AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 125
A+VGPNG GKS I I L S R K+ +F+
Sbjct: 28 AVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIFA 67
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 96 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 147
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 78 GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
GIDL + ++G NG GK+T L IAG ++ G +
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 84 RIAMVGPNGIGKSTIL-KLIAGELQ---PSSGTVFRSAKVRIAVFSQHHVDGLD 133
RI MVG + GK+TIL KL GE+ P+ G + + + F+ V GLD
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLD 57
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
G + K +++ I + + G NG GK+T+L ++ +SGTV
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 85 IAMVGPNGIGKSTILKLIAG 104
+ +VGPNG GKST+L +AG
Sbjct: 29 LHLVGPNGAGKSTLLARMAG 48
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 56 ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I+ +A+F + P + F I + +A+VG G GKS++L + E+ G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 347
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 85 IAMVGPNGIGKSTILKLIAG 104
+ +VGPNG GKST+L +AG
Sbjct: 29 LHLVGPNGAGKSTLLARMAG 48
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAKVRIAVFSQHHVD 130
I + GP+G GK T+ K +A LQ SG ++R V HHVD
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR---VLALAALHHHVD 53
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAKVRIAVFSQHHVD 130
I + GP+G GK T+ K +A LQ SG ++R V HHVD
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR---VLALAALHHHVD 53
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAKVRIAVFSQHHVD 130
I + GP+G GK T+ K +A LQ SG ++R V HHVD
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR---VLALAALHHHVD 53
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGF-GCSGGTNS 186
G P AHL SF + G ++P+Y +GF G NS
Sbjct: 44 GAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNS 83
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
+NL F + I + GP+G GKST+LK + E S G
Sbjct: 8 ENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFG 46
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 23/107 (21%)
Query: 26 ERMGHVDEVVNDPDYKFEFPTPDDRP-----------GPPIISFSDASFGYPGG------ 68
E+ G VDE ND D + E P+ + P + +SD + G G
Sbjct: 90 EQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVA-GLEGAKEALKE 148
Query: 69 ----PILFKNLNFGIDLDSR-IAMVGPNGIGKSTILKLIAGELQPSS 110
PI F +L G R I + GP G GKS + K +A E S+
Sbjct: 149 AVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 195
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 85 IAMVGPNGIGKSTILKLIAG 104
+ +VGPNG GKST+L AG
Sbjct: 29 LHLVGPNGAGKSTLLARXAG 48
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 85 IAMVGPNGIGKSTILKLIAG 104
+ +VGPNG GKST+L AG
Sbjct: 29 LHLVGPNGAGKSTLLARXAG 48
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 30/120 (25%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY 141
I + GP+G GK T+ K +A L SG ++R +A+ + HH +D+S+ L
Sbjct: 30 ITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV----LALAALHH--QVDISTEEAL- 82
Query: 142 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCS--------GGTNSRPCFVPR 193
VP L AHL V+ N LQ L G S G T S+ PR
Sbjct: 83 -------VP---LAAHLDVRFVSQNGQLQ--VILEGEDVSNEIRTETVGNTASQAAAFPR 130
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----LQPSSGTVFRSAK 118
+ + L D + RI ++G + GK+T+LK +A E + P+ G +S +
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ 57
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107
K L FG+ + GP G GK+ + K IA E Q
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----LQPSSGTVFRSAK 118
+ + L D + RI ++G + GK+T+LK +A E + P+ G +S +
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ 56
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 39 RVVLIGEQGVGKSTLANIFAG 59
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107
K L FG+ + GP G GK+ + K IA E Q
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 38 PDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKST 97
P+ +F+ ++ ++ D YP + N G + + +VGP G GK+
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPE-----RYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 98 ILKLIAGE 105
+ K +AGE
Sbjct: 60 LAKAVAGE 67
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGELQ---PSSGTVFRSAKVRIAVFSQ 126
LFK L FG + RI MVG + GK+TIL KL GE+ P+ G + + + F+
Sbjct: 8 LFKGL-FG-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 65
Query: 127 HHVDGLD 133
V G D
Sbjct: 66 WDVGGQD 72
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGELQ---PSSGTVFRSAKVRIAVFSQ 126
LFK L FG + RI MVG + GK+TIL KL GE+ P+ G + + + F+
Sbjct: 7 LFKGL-FGKK-EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 64
Query: 127 HHVDGLD 133
V G D
Sbjct: 65 WDVGGQD 71
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPS 109
G ++S D IL + L+ + A++GPNG GKST+ +AG + + +
Sbjct: 17 GSHMLSIKDLHVSVEDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT 75
Query: 110 SGTVFRSAKVRIAV 123
GTV K +A+
Sbjct: 76 GGTVEFKGKDLLAL 89
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
+ K ++ + ++++G +G GKST+L ++ P+ G VF K
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK 66
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 86 AMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAV 123
A++GPNG GKST+ +AG + + + GTV K +A+
Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 65 YPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
+ G P +L K L+F D +R+ +VG GKSTI+ + G+ S G
Sbjct: 82 HKGEPRKVLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKRASSVG 128
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 84 RIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR---SAKVRIAVFSQHHVDGLDL 134
R+ ++GP G GK T +A +L Q S+G +FR ++ V ++ ++D DL
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDL 58
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ 107
+ MVGP G GK+ + K IAGE +
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAK 70
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 84 RIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR---SAKVRIAVFSQHHVDGLDLSSN 137
R+ ++GP G GK T +A +L Q S+G +FR ++ V ++ ++D DL +
Sbjct: 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 138 PL 139
L
Sbjct: 82 DL 83
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+G++T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN 78
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSS 110
+ GP G+GKST K +A +L S+
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSA 30
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 64 GYPGGPILFKNLNFGIDLDSR-------IAMVGPNGIGKSTILKLIAGELQPSSGTV 113
GY G + KNLN I + I GP G+GK+T+ +I+ E + T
Sbjct: 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSANIKTT 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,568,775
Number of Sequences: 62578
Number of extensions: 286668
Number of successful extensions: 1021
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 158
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)