BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029133
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3
PE=2 SV=1
Length = 715
Score = 350 bits (899), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/190 (87%), Positives = 179/190 (94%), Gaps = 5/190 (2%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
MQ+FIDKFRYNAKRASLVQSRIKAL+R+ HVD+V+NDPDYKFEFPTPDD+PGPPIISFSD
Sbjct: 449 MQAFIDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSD 508
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
ASFGYPGGP+LF+NLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR
Sbjct: 509 ASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVR 568
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180
+AVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR+HLGS GVTGNLALQPMYTL
Sbjct: 569 VAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTL----- 623
Query: 181 SGGTNSRPCF 190
SGG SR F
Sbjct: 624 SGGQKSRVAF 633
>sp|P43535|GCN20_YEAST Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GCN20 PE=1 SV=1
Length = 752
Score = 177 bits (449), Expect = 4e-44, Method: Composition-based stats.
Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 6/190 (3%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+Q FIDK+RYNA ++ QSRIK LE++ ++ D F+FP D + PPII D
Sbjct: 478 LQEFIDKYRYNAAKSQEAQSRIKKLEKLPVLEPPEQDKTIDFKFPECD-KLSPPIIQLQD 536
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
SFGY +L K++N + +DSRIA+VG NG GK+T+LK++ +L+P G V R+ ++R
Sbjct: 537 VSFGYDENNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLR 596
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180
I F+QHHVD +DL+++ + +M + FPG +++ R HLGSFG+TG L LQ M L
Sbjct: 597 IGYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLL----- 651
Query: 181 SGGTNSRPCF 190
SGG SR F
Sbjct: 652 SGGQKSRVAF 661
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G + N + R +VG NGIGKST+L+ ++
Sbjct: 211 GQRILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALS 246
>sp|O59672|YB89_SCHPO Uncharacterized ABC transporter ATP-binding protein C29A3.09c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A3.09c PE=3 SV=1
Length = 736
Score = 175 bits (443), Expect = 2e-43, Method: Composition-based stats.
Identities = 95/193 (49%), Positives = 127/193 (65%), Gaps = 10/193 (5%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+QSFIDKFRYNA ++S QSRIK LE++ + E + P ++ PPI+ SD
Sbjct: 464 LQSFIDKFRYNAAKSSEAQSRIKKLEKLP-ILEKPQTEEEVEFEFPPVEKISPPILQMSD 522
Query: 61 ASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
+F Y PG PIL K+++ + +DSRI +VGPNG GKST+LKL+ +L P+SG V R ++
Sbjct: 523 VNFEYVPGHPIL-KHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRL 581
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-- 177
RIA F+QHHVD LDL+ N L ++ + FPG E++ R HLG+FGV+G LALQ M TLSG
Sbjct: 582 RIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQ 641
Query: 178 -----FGCSGGTN 185
F C G N
Sbjct: 642 KSRVAFACLGLQN 654
>sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1
PE=1 SV=1
Length = 595
Score = 160 bits (404), Expect = 6e-39, Method: Composition-based stats.
Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 10/194 (5%)
Query: 1 MQSFIDKFRY-NAKRASLVQSRIKAL---ERMGHVDEVVNDPDYKFEFPTPDDRPGPPII 56
M+ +I +F + +AK A QS+ K L ER G ++V D F F P PP++
Sbjct: 322 MKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFADVGKLP-PPVL 380
Query: 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
F + SFGY +++KN++FG+DLDSR+A+VGPNG GKST+LKL+ GEL P+ G V R
Sbjct: 381 QFVEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRH 440
Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 176
++IA + QH + LDL LLYMMR FPG E+K+RA +G FG+TG + PM L
Sbjct: 441 NHLKIAQYHQHLAEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVMPMKNL- 499
Query: 177 GFGCSGGTNSRPCF 190
S G SR F
Sbjct: 500 ----SDGQRSRVIF 509
>sp|Q66H39|ABCF3_RAT ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus
GN=Abcf3 PE=2 SV=1
Length = 709
Score = 159 bits (401), Expect = 1e-38, Method: Composition-based stats.
Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+Q FID+FRYNA RAS VQS++K LE++ + V + + +FP ++ PPI+ +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDE 496
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
F Y I+F L+ DL+SRI +VG NG GKST+LKL+ G+L P G ++
Sbjct: 497 VDFYYDPKHIIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLAPVRGIRHAHRNLK 556
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180
I FSQHHV+ LDL+ + + + R FPG PE++ R LG +G++G LA++P+ +L
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASL----- 611
Query: 181 SGGTNSRPCF 190
SGG SR F
Sbjct: 612 SGGQKSRVAF 621
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
D SFG +L + + R +VG NG+GK+T+LK++A
Sbjct: 184 DVSFG---DRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLA 224
>sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3
PE=1 SV=2
Length = 709
Score = 158 bits (400), Expect = 2e-38, Method: Composition-based stats.
Identities = 79/190 (41%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+Q FID+FRYNA RAS VQS++K LE++ + V + + +FP ++ PPI+ +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFPDGFEKFSPPILQLDE 496
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
F Y ++F L+ DL+SRI +VG NG GKST+LKL+ G+L P G ++
Sbjct: 497 VDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLK 556
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180
I FSQHHV+ LDL+ + + + R FPG PE++ R LG +G++G LA++P+ +L
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASL----- 611
Query: 181 SGGTNSRPCF 190
SGG SR F
Sbjct: 612 SGGQKSRVAF 621
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
D SFG +L + + R +VG NG+GK+T+LK++A
Sbjct: 184 DVSFG---DRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLA 224
>sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3
PE=1 SV=1
Length = 709
Score = 157 bits (398), Expect = 3e-38, Method: Composition-based stats.
Identities = 79/190 (41%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+Q FID+FRYNA RAS VQS++K LE++ + V + + +FP ++ PPI+ +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDE 496
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
F Y +F L+ DL+SRI +VG NG GKST+LKL+ G+L P G ++
Sbjct: 497 VDFYYDPKHSIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLK 556
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180
I FSQHHV+ LDL+ + + + R FPG+PE++ R LG +G++G LA++P+ +L
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISGELAMRPVASL----- 611
Query: 181 SGGTNSRPCF 190
SGG SR F
Sbjct: 612 SGGQKSRVAF 621
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
D SFG +L + + R +VG NG+GK+T+LK++A
Sbjct: 184 DVSFG---DRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLA 224
>sp|Q5R9Z5|ABCF3_PONAB ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3
PE=2 SV=1
Length = 709
Score = 157 bits (398), Expect = 3e-38, Method: Composition-based stats.
Identities = 79/190 (41%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+Q FID+FRYNA RAS VQS++K LE++ + V + + +FP ++ PPI+ +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFPDGFEKFSPPILQLDE 496
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
F Y ++F L+ DL+SRI +VG NG GKST+LKL+ G+L P G ++
Sbjct: 497 VDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLK 556
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180
I FSQHHV+ LDL+ + + + R FPG PE++ R LG +G++G LA++P+ +L
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASL----- 611
Query: 181 SGGTNSRPCF 190
SGG SR F
Sbjct: 612 SGGQKSRVAF 621
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
D SFG +L + + R +VG NG+GK+T+LK++A
Sbjct: 184 DVSFG---DRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLA 224
>sp|Q8T6B4|ABCF4_DICDI ABC transporter F family member 4 OS=Dictyostelium discoideum
GN=abcF4 PE=3 SV=1
Length = 1142
Score = 148 bits (373), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
M FI K + N + A SR K +E++ ++ D +FP P+ PP++ F D
Sbjct: 870 MNEFITKNKNNTQ-AKQAASRAKKMEKIETIELEREDASLVVDFPQPEHLT-PPLLVFKD 927
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
FGY G P +FK L+ GID+DS+IA+VG NG+GKST++KL+ G+L ++G + RS K+R
Sbjct: 928 VCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLMNGDLHETTGYIERSRKMR 987
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
+A FSQH VD LD + P+ Y F P Q++R HLG FG+ +L L + TLSG
Sbjct: 988 VARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRNHLGRFGICNSLPLHKITTLSG 1044
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
I F + PG IL N + + + VG NGIGKST++K IA
Sbjct: 604 IKFDNLILSVPG-RILLNNASLTLAYGQKYGFVGRNGIGKSTLVKKIA 650
>sp|P40024|ARB1_YEAST ABC transporter ATP-binding protein ARB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARB1 PE=1
SV=1
Length = 610
Score = 135 bits (340), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 108/183 (59%), Gaps = 8/183 (4%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERM---GHVDEVVNDPDYKFEFPTPDDRPGPPIIS 57
++ FI A +SR K L++M G V VV D + F FP + P PP+++
Sbjct: 336 IKKFIASAGTYANLVKQAKSRQKILDKMEADGLVQPVVPDKVFSFRFPQVERLP-PPVLA 394
Query: 58 FSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
F D SF Y P L+++LNFG+D+DSRIA+VGPNG+GKST+LK++ GEL P SG V R
Sbjct: 395 FDDISFHYESNPSENLYEHLNFGVDMDSRIALVGPNGVGKSTLLKIMTGELTPQSGRVSR 454
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE--QKLRAHLGSFGVTGNLALQPMY 173
V++ V+SQH D LDL+ + L ++ + + + Q R LG +G+TG M
Sbjct: 455 HTHVKLGVYSQHSQDQLDLTKSALEFVRDKYSNISQDFQFWRGQLGRYGLTGEGQTVQMA 514
Query: 174 TLS 176
TLS
Sbjct: 515 TLS 517
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108
G +L ++ ++ R ++G NG GKST LK +A P
Sbjct: 93 GKVLIQDSGLELNYGRRYGLLGENGCGKSTFLKALATREYP 133
>sp|Q8SRV5|ABCF3_ENCCU Probable ATP-binding cassette sub-family F member 3 homolog
OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU05_1190
PE=3 SV=1
Length = 554
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 15/191 (7%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFP-TPDDRPGPPIISFS 59
MQSFID+FRYNAKRASLVQS+IK L +M + DP KF F TP +I F
Sbjct: 298 MQSFIDRFRYNAKRASLVQSKIKMLAKMPTLVAPKQDPVIKFTFSSTP---AQGALIEFV 354
Query: 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
+ F Y G +L L+ I+ DSRI +VG NG GKST LKL+AG+L+ + G++ R+ +
Sbjct: 355 NVVFSYGCGKVL-GGLSMKINSDSRIVVVGANGQGKSTFLKLLAGKLEATEGSIIRAPSL 413
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFG 179
R+ F+QHH+D L ++ N L +MM+ + +++ R L SFG++ + Q + TL
Sbjct: 414 RVGYFAQHHIDHLRVNENVLDFMMKSY---TQEEARRALASFGLS--VDNQCIGTL---- 464
Query: 180 CSGGTNSRPCF 190
SGG SR F
Sbjct: 465 -SGGQKSRLGF 474
>sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2
PE=1 SV=2
Length = 623
Score = 133 bits (334), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 7/182 (3%)
Query: 1 MQSFIDKFRY-NAKRASLVQSRIKALERM---GHVDEVVNDPDYKFEFPTPDDRPGPPII 56
M+++I +F + +AK A QS+ K L++M G + VV+D F FP P + PP+I
Sbjct: 338 MKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFP-PCGKIPPPVI 396
Query: 57 SFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+ SF Y GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + +
Sbjct: 397 MVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRK 456
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYT 174
+ V+I + QH + LDL +PL YMM+C+P + E +++R +G +G+TG + P+
Sbjct: 457 HSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRN 516
Query: 175 LS 176
LS
Sbjct: 517 LS 518
>sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2
PE=2 SV=1
Length = 628
Score = 133 bits (334), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 7/182 (3%)
Query: 1 MQSFIDKFRY-NAKRASLVQSRIKALERM---GHVDEVVNDPDYKFEFPTPDDRPGPPII 56
M+++I +F + +AK A QS+ K L++M G + VV+D F FP P + PP+I
Sbjct: 343 MKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFP-PCGKIPPPVI 401
Query: 57 SFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+ SF Y GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + +
Sbjct: 402 MVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRK 461
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYT 174
+ V+I + QH + LDL +PL YMM+C+P + E +++R +G +G+TG + P+
Sbjct: 462 HSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRN 521
Query: 175 LS 176
LS
Sbjct: 522 LS 523
>sp|Q2KJA2|ABCF2_BOVIN ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2
PE=2 SV=1
Length = 625
Score = 133 bits (334), Expect = 9e-31, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 7/182 (3%)
Query: 1 MQSFIDKFRY-NAKRASLVQSRIKALERM---GHVDEVVNDPDYKFEFPTPDDRPGPPII 56
M+++I +F + +AK A QS+ K L++M G + VV+D F FP P + PP+I
Sbjct: 340 MKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFP-PCGKIPPPVI 398
Query: 57 SFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+ SF Y GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + +
Sbjct: 399 MVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRK 458
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYT 174
+ V+I + QH + LDL +PL YMM+C+P + E +++R +G +G+TG + P+
Sbjct: 459 HSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRN 518
Query: 175 LS 176
LS
Sbjct: 519 LS 520
>sp|Q9USH9|YJQ1_SCHPO Uncharacterized ABC transporter ATP-binding protein C825.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC825.01 PE=1 SV=1
Length = 822
Score = 126 bits (316), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/123 (47%), Positives = 84/123 (68%)
Query: 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
P I F D SF YPGGP +F LNFG+DL SR+A+VGPNG GK+T++KLI ++QPS+G+V
Sbjct: 592 PAIKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY 173
R +R+A+F+QH D LD+ + + ++ F PE ++R +G +G+TG + PM
Sbjct: 652 VRHHGLRLALFNQHMGDQLDMRLSAVEWLRTKFGNKPEGEMRRIVGRYGLTGKSQVIPMG 711
Query: 174 TLS 176
LS
Sbjct: 712 QLS 714
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
G +L K+ + R ++ PNG GKST+L IA L P+ ++
Sbjct: 287 GKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIACGLIPTPSSL 332
>sp|P63389|YHES_ECOLI Uncharacterized ABC transporter ATP-binding protein YheS
OS=Escherichia coli (strain K12) GN=yheS PE=1 SV=1
Length = 637
Score = 125 bits (314), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+QS+ID+FR A +A QSRIK LERM + D ++F F P+ P P ++
Sbjct: 259 LQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNP-LLKMEK 317
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
S GY G I+ ++ + SRI ++G NG GKST++KL+AGEL P SG + + ++
Sbjct: 318 VSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIK 376
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
+ F+QH ++ L +P+ ++ R P EQKLR +LG FG G+ + SG
Sbjct: 377 LGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSG 433
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
G +L N I+ ++ +VG NG GKST+L L+ E+ G+
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS 57
>sp|P63390|YHES_ECO57 Uncharacterized ABC transporter ATP-binding protein YheS
OS=Escherichia coli O157:H7 GN=yheS PE=3 SV=1
Length = 637
Score = 125 bits (314), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+QS+ID+FR A +A QSRIK LERM + D ++F F P+ P P ++
Sbjct: 259 LQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNP-LLKMEK 317
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
S GY G I+ ++ + SRI ++G NG GKST++KL+AGEL P SG + + ++
Sbjct: 318 VSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIK 376
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
+ F+QH ++ L +P+ ++ R P EQKLR +LG FG G+ + SG
Sbjct: 377 LGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSG 433
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
G +L N I+ ++ +VG NG GKST+L L+ E+ G+
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS 57
>sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4
PE=2 SV=1
Length = 723
Score = 122 bits (305), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 9/174 (5%)
Query: 12 AKRASLVQSRIKALERMGHVDEVVND-PDYK--FEFPTPDDRPGPPIISFSDASFGYPGG 68
AK AS +S+ K ++ G E DY F FP P + PP++ + SF YP
Sbjct: 450 AKEASKSKSKGKTVDEEGPAPEAPRKWRDYSVVFHFPEPTELT-PPLLQLIEVSFSYPNR 508
Query: 69 P-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
P N++ GID+ +R+A+VGPNG GKST+L L+AG+L P+ G + RS K+RI +SQH
Sbjct: 509 PDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQH 568
Query: 128 HVDGLDLSSNPLLYMMRCFP---GVPEQK-LRAHLGSFGVTGNLALQPMYTLSG 177
VD L + P+ Y++R P G +Q+ +RA LG FG+ + L P+ LSG
Sbjct: 569 FVDLLTMGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSG 622
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G L KN + I R ++GPNG+GKST+LKL+A
Sbjct: 174 GKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLA 209
>sp|Q8T6B7|ABCF2_DICDI ABC transporter F family member 2 OS=Dictyostelium discoideum
GN=abcF2 PE=3 SV=1
Length = 593
Score = 120 bits (300), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Query: 19 QSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPG--GPILFKNLN 76
Q I +E G V+ V D + F FP P PPI+ F + +F Y G +L++NL+
Sbjct: 328 QKIIDKMEEAGLVERVQEDKIFNFSFP-PCGELAPPIMHFDNVTFSYSGKEADVLYRNLD 386
Query: 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
IDLDSRIA+VGPNG GKST+LKL+ G++ P+ G + + + +++A + QH + LDL++
Sbjct: 387 LAIDLDSRIALVGPNGAGKSTLLKLMVGQISPTQGFIKKHSHLKMARYHQHAHEVLDLTA 446
Query: 137 NPLLYMMRCFPGVPE--QKLRAHLGSFGVTGNLALQPMYTLSGFGC-SGGTNSRPCF 190
PL ++ F + + ++ R +G FGVTG + + GC S G SR F
Sbjct: 447 TPLDFVRSKFAHMNKDTEEWRREIGRFGVTGKAQTEAI------GCMSDGIKSRLIF 497
>sp|O42943|YBP8_SCHPO Uncharacterized ABC transporter ATP-binding protein C16H5.08c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16H5.08c PE=1 SV=1
Length = 618
Score = 117 bits (294), Expect = 4e-26, Method: Composition-based stats.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 13 KRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGG--PI 70
++A Q I +E G V++ + FEF P PPII+F+D +F Y G
Sbjct: 346 RQAKSKQKIIDKMEAAGLVEKPEPPRQFSFEFDEVRKLP-PPIIAFNDVAFSYDGNLDHA 404
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
L+++L+FGID+DSR+A+VG NG GKST+L LI G L P G V R + +++A +SQH D
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYSGLKMAKYSQHSAD 464
Query: 131 GLDLSSNPLLYMMRCF-PGVPEQKL---RAHLGSFGVTGNLALQPMYTLSGFGCSGGTNS 186
L +PL Y+M + P PE++L R+ LG FG++G + TL S G S
Sbjct: 465 QLPYDKSPLEYIMDTYKPKFPERELQQWRSVLGKFGLSGLHQTSEIRTL-----SDGLKS 519
Query: 187 RPCF 190
R F
Sbjct: 520 RVVF 523
>sp|P44808|Y658_HAEIN Uncharacterized ABC transporter ATP-binding protein HI_0658
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=HI_0658 PE=1 SV=1
Length = 638
Score = 111 bits (277), Expect = 4e-24, Method: Composition-based stats.
Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 4/180 (2%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
+Q +ID+F+ A +A QSR+KALERM + D + FEF P P P ++
Sbjct: 259 LQKYIDRFKAKATKAKQAQSRMKALERMELIAPAYVDNPFTFEFRPPQSLPNP-LVMIEQ 317
Query: 61 ASFGYPGGPI---LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117
AS GY G + + + SRI ++G NG GKST++KL+AGEL SGTV +
Sbjct: 318 ASAGYGIGESAVEILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAK 377
Query: 118 KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
V++ F+QH +D L + L +M + P EQ++R +LGSF G+ Q + + SG
Sbjct: 378 GVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSG 437
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+I FS+ S G L +N + I+ ++ +VG NG GKS++ L+ EL P G V
Sbjct: 1 MIIFSNLSLKR-GQTELLENASATINPKQKVGLVGKNGCGKSSLFALLKKELMPEGGEVN 59
Query: 115 RSAKVRIAVFSQHHVDGLDLSS 136
A R++ +Q LD+S+
Sbjct: 60 YPANWRVSWVNQ-ETPALDISA 80
>sp|O05519|YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein YdiF
OS=Bacillus subtilis (strain 168) GN=ydiF PE=3 SV=2
Length = 642
Score = 96.3 bits (238), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVND-PDYKFEFPTPDDRPGPPIISFS 59
+Q F+D+ A QSR K LERM + + + D F F + G ++
Sbjct: 272 LQDFVDRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDI-TKQSGNEVLRVQ 330
Query: 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
D + Y P L ++F + A+VGPNGIGKST+LK + L+P GT+ + V
Sbjct: 331 DLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNV 390
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
+ + Q + L S L + +PG+PE+++R LG+F +G+ L+P+++LSG
Sbjct: 391 SVGYYDQEQAE-LTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSG 447
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G + N+ + RIA+VG NG GKST+LK+IAG+L G + + + + +Q
Sbjct: 14 GADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPKDITMGYLAQ 73
Query: 127 HHVDGLD 133
H GLD
Sbjct: 74 H--TGLD 78
>sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1
PE=1 SV=1
Length = 837
Score = 87.0 bits (214), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
++ +FGY G LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P++G +
Sbjct: 616 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMR 675
Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
++ +++I F+Q + + L + P Y+ R F +P Q R LG FG+ + +T
Sbjct: 676 KNHRLKIGFFNQQYAEQLHMEETPTEYLQRSF-NLPYQDARKCLGRFGLESH-----AHT 729
Query: 175 LSGFGCSGGTNSRPCF 190
+ SGG +R F
Sbjct: 730 IQICKLSGGQKARVVF 745
Score = 34.3 bits (77), Expect = 0.58, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G LF N + I R +VGPNG GK+T+LK IA
Sbjct: 307 GKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIA 342
>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes
GN=ABCF1 PE=3 SV=1
Length = 807
Score = 86.7 bits (213), Expect = 9e-17, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
++ +FGY G LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P+ G +
Sbjct: 586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMR 645
Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
++ +++I F+Q + + L + P Y+ R F +P Q R LG FG+ + +T
Sbjct: 646 KNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHT 699
Query: 175 LSGFGCSGGTNSRPCF 190
+ SGG +R F
Sbjct: 700 IQICKLSGGQKARVVF 715
Score = 35.0 bits (79), Expect = 0.34, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G LF N + I R +VGPNG GK+T+LK IA
Sbjct: 277 GKELFVNADLYIVASRRYGLVGPNGKGKTTLLKHIA 312
>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus
GN=Abcf1 PE=1 SV=1
Length = 839
Score = 86.7 bits (213), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
++ +FGY G LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P++G +
Sbjct: 618 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMR 677
Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
++ +++I F+Q + + L + P Y+ R F +P Q R LG FG+ + +T
Sbjct: 678 KNHRLKIGFFNQQYAEQLHMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHT 731
Query: 175 LSGFGCSGGTNSRPCF 190
+ SGG +R F
Sbjct: 732 IQICKLSGGQKARVVF 747
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G LF N + I R +VGPNG GK+T+LK IA
Sbjct: 309 GKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIA 344
>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1
PE=1 SV=2
Length = 845
Score = 86.3 bits (212), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
++ +FGY G LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P+ G +
Sbjct: 624 VLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMR 683
Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
++ +++I F+Q + + L + P Y+ R F +P Q R LG FG+ + +T
Sbjct: 684 KNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHT 737
Query: 175 LSGFGCSGGTNSRPCF 190
+ SGG +R F
Sbjct: 738 IQICKLSGGQKARVVF 753
Score = 34.7 bits (78), Expect = 0.47, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G LF N + I R +VGPNG GK+T+LK IA
Sbjct: 315 GKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIA 350
>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1
PE=2 SV=1
Length = 807
Score = 86.3 bits (212), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
++ +FGY G LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P+ G +
Sbjct: 586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEMR 645
Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
++ +++I F+Q + + L + P Y+ R F +P Q R LG FG+ + +T
Sbjct: 646 KNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHT 699
Query: 175 LSGFGCSGGTNSRPCF 190
+ SGG +R F
Sbjct: 700 IQICKLSGGQKARVVF 715
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
G LF N + I R +VGPNG GK+T+LK IA
Sbjct: 277 GKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIA 312
>sp|P0A9U3|YBIT_ECOLI Uncharacterized ABC transporter ATP-binding protein YbiT
OS=Escherichia coli (strain K12) GN=ybiT PE=3 SV=1
Length = 530
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVV----NDPDYKFEFPTPDDRPGPPII 56
+QSF+ +F NA ++ SR + ++++ ++EV +P +FE D + +
Sbjct: 265 LQSFVSRFSANASKSRQATSRARQIDKI-KLEEVKASSRQNPFIRFE---QDKKLFRNAL 320
Query: 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
+ G+ GP LFKNLN +++ ++A++G NG+GKST+LK + G+LQP SGTV S
Sbjct: 321 EVEGLTKGFDNGP-LFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWS 379
Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
RI ++Q H + +M + G EQ +R+ LG + + +P L
Sbjct: 380 ENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVL 439
Query: 176 SG 177
SG
Sbjct: 440 SG 441
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G LF+N++ +R ++G NG GKST +K++ G+L+P+ G V RI Q
Sbjct: 12 GSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQ 71
Query: 127 HH 128
Sbjct: 72 DQ 73
>sp|P0A9U4|YBIT_ECOL6 Uncharacterized ABC transporter ATP-binding protein YbiT
OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /
UPEC) GN=ybiT PE=3 SV=1
Length = 530
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVV----NDPDYKFEFPTPDDRPGPPII 56
+QSF+ +F NA ++ SR + ++++ ++EV +P +FE D + +
Sbjct: 265 LQSFVSRFSANASKSRQATSRARQIDKI-KLEEVKASSRQNPFIRFE---QDKKLFRNAL 320
Query: 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
+ G+ GP LFKNLN +++ ++A++G NG+GKST+LK + G+LQP SGTV S
Sbjct: 321 EVEGLTKGFDNGP-LFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWS 379
Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
RI ++Q H + +M + G EQ +R+ LG + + +P L
Sbjct: 380 ENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVL 439
Query: 176 SG 177
SG
Sbjct: 440 SG 441
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G LF+N++ +R ++G NG GKST +K++ G+L+P+ G V RI Q
Sbjct: 12 GSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQ 71
Query: 127 HH 128
Sbjct: 72 DQ 73
>sp|P0A9U5|YBIT_ECO57 Uncharacterized ABC transporter ATP-binding protein YbiT
OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1
Length = 530
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVV----NDPDYKFEFPTPDDRPGPPII 56
+QSF+ +F NA ++ SR + ++++ ++EV +P +FE D + +
Sbjct: 265 LQSFVSRFSANASKSRQATSRARQIDKI-KLEEVKASSRQNPFIRFE---QDKKLFRNAL 320
Query: 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
+ G+ GP LFKNLN +++ ++A++G NG+GKST+LK + G+LQP SGTV S
Sbjct: 321 EVEGLTKGFDNGP-LFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWS 379
Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
RI ++Q H + +M + G EQ +R+ LG + + +P L
Sbjct: 380 ENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVL 439
Query: 176 SG 177
SG
Sbjct: 440 SG 441
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G LF+N++ +R ++G NG GKST +K++ G+L+P+ G V RI Q
Sbjct: 12 GSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQ 71
Query: 127 HH 128
Sbjct: 72 DQ 73
>sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=CEF3 PE=1 SV=2
Length = 1050
Score = 77.0 bits (188), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 39 DYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNG 92
D +F FP P G I+ S+ SF YPG +++NF L SRIA++GPNG
Sbjct: 650 DLEFRFPEPGFLEGVKTKQKAIVKVSNMSFQYPGTSKPQIQDINFQCSLSSRIAVIGPNG 709
Query: 93 IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH---HVDGLDLSSNPLLYM 142
GKST++ ++ GEL P++G V+ RIA QH H+D L P Y+
Sbjct: 710 AGKSTLINVLTGELLPTTGEVYVHENCRIAYIKQHAFAHIDN-HLDKTPSEYI 761
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 48 DDRPGPPIISFS------------DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGK 95
D+ P PP SF + S Y G IL F + + R + GPNG GK
Sbjct: 416 DNIPQPP--SFEDEEDEGEDLCNCEFSLAY-GAKILLNKTQFRLKRNRRYGLCGPNGAGK 472
Query: 96 STILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQK 153
ST+++ IA G+++ F + V+ +H +DG + + +++ G+ +
Sbjct: 473 STLMRAIANGQVEG-----FPTQDECKTVYVEHDIDGTHADTTVVEFVIEDGEVGLTKDV 527
Query: 154 LRAHLGSFGVTGNLALQPMYTLSG 177
+ L F + + P+ +LSG
Sbjct: 528 VVDKLREFNFSDEMINMPIQSLSG 551
>sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YEF3 PE=1 SV=4
Length = 1044
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 639 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIA 698
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
++GPNG GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 699 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 739
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+++ IA +G V F + +
Sbjct: 437 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEE 489
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
V+ +H +DG ++ L ++ G E ++ L FG T + P+ LSG
Sbjct: 490 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEMIAMPISALSG 546
>sp|Q75EV6|EF3_ASHGO Elongation factor 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=TEF3 PE=3 SV=2
Length = 1044
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 39 DYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNG 92
D +F+FP P G I+ S+ SF YPG ++NF L SRIA++GPNG
Sbjct: 645 DLEFKFPEPGFLEGVKTKQKAIVKVSNMSFQYPGTSKPQIADINFQCSLSSRIAVIGPNG 704
Query: 93 IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
GKST++ ++ GEL P++G V+ RIA QH
Sbjct: 705 AGKSTLINVLTGELLPTTGEVYTHENCRIAYIKQH 739
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+++ IA +G V F +
Sbjct: 437 SLAY-GAKILLNKTQLRLKRARRYGLCGPNGAGKSTLMRAIA------NGQVDGFPTQDE 489
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLS 176
V+ +H +DG ++ L ++ + G E +KLR FG + + P+ +LS
Sbjct: 490 CRTVYVEHDIDGTQADTSVLDFVFQGDVGTREVITEKLR----EFGFSDEMIAMPIMSLS 545
Query: 177 G 177
G
Sbjct: 546 G 546
>sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HEF3 PE=1 SV=2
Length = 1044
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 39 DYKFEFPTPDDRPG-----PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPN 91
D +F+FPTP G I+ S+ +F YPG P + ++ F L SRIA++GPN
Sbjct: 645 DLEFQFPTPGYLEGVKTKQKAIVKVSNMTFQYPGTTKPQV-SDVTFQCSLSSRIAVIGPN 703
Query: 92 GIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
G GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 704 GAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 739
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+++ IA +G V F +
Sbjct: 437 SLAY-GAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRSIA------NGQVDGFPTQDE 489
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
V+ +H +D + L ++ G + + + L FG + + P+ +LSG
Sbjct: 490 CRTVYVEHDIDNTHSDMSVLDFVYSGNVGTKDV-ITSKLKEFGFSDEMIEMPIASLSG 546
>sp|O93796|EF3_CANGA Elongation factor 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TEF3 PE=3 SV=2
Length = 1045
Score = 73.9 bits (180), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 39 DYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNG 92
D +F+FP P G I+ S+ +F YPG +++F L SRIA++GPNG
Sbjct: 645 DLEFKFPEPGYLEGVKTKQKAIVKVSNMTFQYPGTSKPQISDISFQCSLSSRIAVIGPNG 704
Query: 93 IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 705 AGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 739
Score = 47.0 bits (110), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+++ IA +G V F + +
Sbjct: 437 SLAY-GAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRAIA------NGQVDGFPTPEE 489
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
+ V+ +H +DG ++ L +++ G E + A L FG T + P+ +LSG
Sbjct: 490 CMTVYVEHDIDGTHADTSVLDFVVSSEVGTKE-AITAKLVEFGFTEEMINMPISSLSG 546
>sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=elf1 PE=1 SV=1
Length = 1057
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 41 KFEFPTPDDRPGPP-----IISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIG 94
KF FP P G I+ ++AS+ YP N+ G+ L SR+A++GPNG G
Sbjct: 672 KFVFPPPGILTGVRSNTRLILKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAG 731
Query: 95 KSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD--LSSNPLLYMMRCFPG 148
KST++K++ GE+ P G VF+ +R+ +QH LD L P Y+ + G
Sbjct: 732 KSTLIKVLIGEVIPQEGKVFKHPNLRVGYVAQHAFHHLDQHLEKTPSQYIQWRYAG 787
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
+D S Y GG +L + N + R +VG NG GKST+L+ I G+ + + F S
Sbjct: 448 TDFSLAY-GGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAI-GDYKVEN---FPSPD 502
Query: 119 VRIAVFSQHHVDGLDLSSNPLLYMMR----CFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
F H + G D S L ++ + V Q+ L S G T + P+ +
Sbjct: 503 EVKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQEAADALHSVGFTAEMQENPVAS 562
Query: 175 LSG 177
LSG
Sbjct: 563 LSG 565
>sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tef3 PE=1 SV=1
Length = 1047
Score = 70.5 bits (171), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 15/106 (14%)
Query: 39 DYKFEFPTPDDRPG-----PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPN 91
+ +F+FP P G II SF YPG P L +++F + L SRIA++GPN
Sbjct: 651 EMEFKFPEPGFLEGVKTKQRAIIKVQHMSFQYPGTSKPQL-NDISFQVSLSSRIAVIGPN 709
Query: 92 GIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ-------HHVD 130
G GKST++K++ GEL P+ G +++ RIA +Q HH D
Sbjct: 710 GAGKSTLIKVLTGELLPTVGEIYQHENCRIAYVAQAAFTHLGHHPD 755
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRI 121
S Y G IL + R + GPNG GKST+++ I T R+
Sbjct: 441 SLAY-GAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLRT----- 494
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---EQKLRAHLGSFGVTGNLALQPMYTLSG 177
V+ +H +D + + + ++++ P VP ++ L T L P+ +LSG
Sbjct: 495 -VYVEHDIDESEADTPSVDFILQD-PAVPIKDRDEIVKALKENSFTDELINMPIGSLSG 551
>sp|O34512|YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein YfmM
OS=Bacillus subtilis (strain 168) GN=yfmM PE=3 SV=2
Length = 518
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
++ F+ + + ++ SR K L++M ++ P +F F P G I D
Sbjct: 272 LKDFVARNKARVSTRNMAMSRQKKLDKMDMIELAAEKPKPEFHFK-PARTSGKLIFETKD 330
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
GY L + LN ++ +IA+ G NGIGK+T+LK + GE+QP G+V R +
Sbjct: 331 LVIGYDSP--LSRPLNLRMERGQKIALYGANGIGKTTLLKSLLGEIQPLEGSVERGEHIY 388
Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
F Q + + ++N + + FP + ++RA L G+T + LSG
Sbjct: 389 TGYFEQ---EVKETNNNTCIEEVWSEFPSYTQYEIRAALAKCGLTTKHIESRVSVLSG 443
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+S D S G+ G +F N++F + + ++G NG GKST + +I G+L+P G V
Sbjct: 3 ILSVKDLSHGF-GDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVE 61
Query: 115 RSAKVRIAVFSQHHV 129
S VR+ QH V
Sbjct: 62 WSKNVRVGYLDQHTV 76
>sp|Q08972|NEW1_YEAST [NU+] prion formation protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NEW1 PE=1 SV=1
Length = 1196
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 35 VNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAM 87
+ D + + FP P G + +D +F YPG P L +++ + L SR+A
Sbjct: 786 LTDSNAQMRFPPPGILTGVKSNTRAVAKMTDVTFSYPGAQKPSL-SHVSCSLSLSSRVAC 844
Query: 88 VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
+GPNG GKST++KL+ GEL P+ G V + +RI +QH
Sbjct: 845 LGPNGAGKSTLIKLLTGELVPNEGKVEKHPNLRIGYIAQH 884
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 48 DDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GEL 106
D+ G I++ +D S Y G +L N + R + G NG GKST+++ IA G+L
Sbjct: 565 DEDEGIEIVN-TDFSLAY-GSRMLLNKTNLRLLKGHRYGLCGRNGAGKSTLMRAIANGQL 622
Query: 107 QPSSGTVFRSAKVRIAVFSQHHVDG----LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162
F F +H + G LDL S + + +++ A L S G
Sbjct: 623 DG-----FPDKDTLRTCFVEHKLQGEEGDLDLVS--FIALDEELQSTSREEIAAALESVG 675
Query: 163 VTGNLALQPMYTLSG 177
Q + +LSG
Sbjct: 676 FDEERRAQTVGSLSG 690
>sp|P45167|UUP2_HAEIN ABC transporter ATP-binding protein uup-2 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=uup-B
PE=3 SV=1
Length = 459
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 50 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109
R G + D S+ G L K+ + I +IA+VGPNG GK+T +KL+ GE+QP+
Sbjct: 126 RSGKIVFEMEDVSYEI-AGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPT 184
Query: 110 SGTVFRSAKVRIAVFSQHHVD 130
SG + K+ IA F Q+ D
Sbjct: 185 SGKIRCGTKLEIAYFDQYRAD 205
>sp|Q9LV93|AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5
PE=2 SV=1
Length = 692
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 11 NAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPI 70
N+ RAS + +++ L+ +++ K FP G +++ + FG+ +
Sbjct: 381 NSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPE-RGTSGRSVVNVKNIDFGFED-KM 438
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-KVRIAVFSQHHV 129
LFK N I+ +IA++GPNG GKST+LKLI G +P G V V F Q+
Sbjct: 439 LFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHNVLPNYFEQNQA 498
Query: 130 DGLDLSSNPL 139
+ LDL L
Sbjct: 499 EVLDLDKTVL 508
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-KVRIAVFSQ 126
G + K++ + + ++ +VG NG GK+T L++I G+ +P SG V ++ +++A SQ
Sbjct: 109 GVTVLKDVTWEVKRGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQ 168
>sp|Q57242|UUP1_HAEIN ABC transporter ATP-binding protein uup-1 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=uup-A
PE=3 SV=1
Length = 647
Score = 63.5 bits (153), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 50 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109
R G + D S+ G L K+ + I +IA+VGPNG GK+T +KL+ GE+QP+
Sbjct: 314 RSGKIVFEMEDVSYEI-AGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPT 372
Query: 110 SGTVFRSAKVRIAVFSQHHVD 130
SG + K+ IA F Q+ D
Sbjct: 373 SGKIRCGTKLEIAYFDQYRAD 393
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+IS ++ + P+L + I+ + + +VG NG GKST+LK+IAG++ G +
Sbjct: 3 LISLTNGYLSFSDAPLL-DHAELHIEPNECVCLVGRNGAGKSTLLKIIAGDVLMDDGKI 60
>sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1
Length = 1042
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 39 DYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNG 92
+ +F FP P G I D F Y G KN++ + L SRIA++GPNG
Sbjct: 646 EIEFSFPEPGYLEGVKTKQRAICRMRDIEFQYEGTSEPQIKNVSLQVSLSSRIAVIGPNG 705
Query: 93 IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
GKST++K++ GEL P G V+ +RIA +Q
Sbjct: 706 AGKSTLIKVLCGELIPQKGEVWCHPNLRIAYVAQ 739
Score = 31.2 bits (69), Expect = 5.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI-AGELQ 107
S Y G IL + + R + GPNG GKST+L+ I G+L+
Sbjct: 436 SLAY-GAKILLNRTSLNLKRGYRYGLCGPNGSGKSTLLRSIFNGQLE 481
>sp|Q9FIB4|AB2F_ARATH ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2
PE=3 SV=2
Length = 678
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 11 NAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPI 70
N+ RAS + +++ L+ +++ K FP G +++ + FG+ +
Sbjct: 367 NSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFPECG-LSGRSVVTVKNLVFGF-DDKM 424
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-KVRIAVFSQHHV 129
LF N I+ ++A++GPNG GKST+LKLI G +P G V V F Q+
Sbjct: 425 LFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMRGEVILGEHNVLPNYFEQNQA 484
Query: 130 DGLDL 134
+ DL
Sbjct: 485 EAQDL 489
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-F 114
+ + S Y G +L K++ + + ++ ++G NG GK+T L++I G+ +P SG V +
Sbjct: 84 VRLENISKSYEGITVL-KDVTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIW 142
Query: 115 RSAKVRIAVFSQ 126
+++A SQ
Sbjct: 143 AKPNLKVAFLSQ 154
>sp|P0A9W5|YJJK_SHIFL Uncharacterized ABC transporter ATP-binding protein YjjK
OS=Shigella flexneri GN=yjjK PE=3 SV=2
Length = 555
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 19 QSRIKALERMGHVDEVVNDPDYKFEFPT------PDDRPGPPIISFSDASFGYPGGPILF 72
QS+ KA R+ +E+ N +Y+ T P R G ++ S+ Y G +L
Sbjct: 284 QSKGKA--RLARFEEL-NSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSY-GDRLLI 339
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
+L+F I + + ++GPNG GKST+ ++I+G+ QP SGT+ V++A Q D +
Sbjct: 340 DDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFR-DSM 398
Query: 133 DLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTG 165
D S L +M+ G E RA++G F G
Sbjct: 399 DNSKTVWEEVSGGLDIMKI--GNTEMPSRAYVGRFNFKG 435
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
+ KN++ ++I ++G NG GKST+L+++AG
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 54
>sp|P0A9W3|YJJK_ECOLI Uncharacterized ABC transporter ATP-binding protein YjjK
OS=Escherichia coli (strain K12) GN=yjjK PE=1 SV=2
Length = 555
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 19 QSRIKALERMGHVDEVVNDPDYKFEFPT------PDDRPGPPIISFSDASFGYPGGPILF 72
QS+ KA R+ +E+ N +Y+ T P R G ++ S+ Y G +L
Sbjct: 284 QSKGKA--RLARFEEL-NSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSY-GDRLLI 339
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
+L+F I + + ++GPNG GKST+ ++I+G+ QP SGT+ V++A Q D +
Sbjct: 340 DDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFR-DSM 398
Query: 133 DLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTG 165
D S L +M+ G E RA++G F G
Sbjct: 399 DNSKTVWEEVSGGLDIMKI--GNTEMPSRAYVGRFNFKG 435
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
+ KN++ ++I ++G NG GKST+L+++AG
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 54
>sp|P0A9W4|YJJK_ECO57 Uncharacterized ABC transporter ATP-binding protein YjjK
OS=Escherichia coli O157:H7 GN=yjjK PE=3 SV=2
Length = 555
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 19 QSRIKALERMGHVDEVVNDPDYKFEFPT------PDDRPGPPIISFSDASFGYPGGPILF 72
QS+ KA R+ +E+ N +Y+ T P R G ++ S+ Y G +L
Sbjct: 284 QSKGKA--RLARFEEL-NSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSY-GDRLLI 339
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
+L+F I + + ++GPNG GKST+ ++I+G+ QP SGT+ V++A Q D +
Sbjct: 340 DDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFR-DSM 398
Query: 133 DLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTG 165
D S L +M+ G E RA++G F G
Sbjct: 399 DNSKTVWEEVSGGLDIMKI--GNTEMPSRAYVGRFNFKG 435
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
+ KN++ ++I ++G NG GKST+L+++AG
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 54
>sp|P63393|IRTB_MYCTU Iron import ATP-binding/permease protein IrtB OS=Mycobacterium
tuberculosis GN=irtB PE=1 SV=1
Length = 579
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
M +++ F ++ A ++S L R+G V+ P T D P I F D
Sbjct: 280 MVRYLEPFTAVSELAPALESTRATLGRIG---SVLTAPVMVAGSGTWRDGAVVPRIEFDD 336
Query: 61 ASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+FGY GG P+L ++F + + A+VGP+G GKSTIL LIAG QP+ G V
Sbjct: 337 VAFGYDGGSGPVL-DGVSFCLQPGTTTAIVGPSGCGKSTILALIAGLHQPTRGRVL 391
>sp|P63394|IRTB_MYCBO Iron import ATP-binding/permease protein IrtB OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=irtB PE=3
SV=1
Length = 579
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
M +++ F ++ A ++S L R+G V+ P T D P I F D
Sbjct: 280 MVRYLEPFTAVSELAPALESTRATLGRIG---SVLTAPVMVAGSGTWRDGAVVPRIEFDD 336
Query: 61 ASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+FGY GG P+L ++F + + A+VGP+G GKSTIL LIAG QP+ G V
Sbjct: 337 VAFGYDGGSGPVL-DGVSFCLQPGTTTAIVGPSGCGKSTILALIAGLHQPTRGRVL 391
>sp|P43672|UUP_ECOLI ABC transporter ATP-binding protein uup OS=Escherichia coli (strain
K12) GN=uup PE=1 SV=2
Length = 635
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 50 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109
R G + D + G L K+ + + +IA++GPNG GK+T+LKL+ G+LQ
Sbjct: 314 RSGKIVFEMEDVCYQV-NGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372
Query: 110 SGTVFRSAKVRIAVFSQHHVD 130
SG + K+ +A F QH +
Sbjct: 373 SGRIHVGTKLEVAYFDQHRAE 393
Score = 37.0 bits (84), Expect = 0.091, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
+IS A + P+L N I+ + R+ +VG NG GKST++K++ E G +
Sbjct: 3 LISMHGAWLSFSDAPLL-DNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRII 61
Query: 115 RSAKVRIAVFSQ 126
+ +A Q
Sbjct: 62 YEQDLIVARLQQ 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,348,793
Number of Sequences: 539616
Number of extensions: 3665557
Number of successful extensions: 20353
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2533
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 17337
Number of HSP's gapped (non-prelim): 3278
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)