Query 029133
Match_columns 198
No_of_seqs 225 out of 2596
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.2E-34 9E-39 229.7 13.7 136 54-196 3-156 (254)
2 COG0488 Uup ATPase components 100.0 1.1E-33 2.4E-38 249.5 16.6 188 1-194 263-454 (530)
3 PRK10636 putative ABC transpor 100.0 1.9E-32 4E-37 248.5 17.9 187 2-195 260-446 (638)
4 PLN03073 ABC transporter F fam 100.0 3.7E-32 8.1E-37 248.3 18.5 187 3-194 456-642 (718)
5 COG1120 FepC ABC-type cobalami 100.0 1.6E-32 3.5E-37 221.4 11.9 133 55-194 2-153 (258)
6 COG1126 GlnQ ABC-type polar am 100.0 1E-32 2.2E-37 214.7 9.7 132 54-194 1-151 (240)
7 COG1116 TauB ABC-type nitrate/ 100.0 7.4E-32 1.6E-36 214.5 12.1 133 54-195 2-146 (248)
8 COG3842 PotA ABC-type spermidi 100.0 3.5E-31 7.5E-36 222.2 11.4 133 53-194 3-151 (352)
9 COG1124 DppF ABC-type dipeptid 100.0 7.9E-31 1.7E-35 207.4 12.8 137 54-195 2-157 (252)
10 COG3839 MalK ABC-type sugar tr 100.0 7.8E-31 1.7E-35 219.0 13.2 131 55-194 3-148 (338)
11 TIGR02868 CydC thiol reductant 100.0 6.8E-30 1.5E-34 227.4 19.0 137 54-194 333-485 (529)
12 COG2884 FtsE Predicted ATPase 100.0 5.8E-31 1.3E-35 201.1 9.5 132 55-194 1-152 (223)
13 COG1136 SalX ABC-type antimicr 100.0 1.8E-30 3.9E-35 205.8 12.7 133 55-194 1-157 (226)
14 COG3638 ABC-type phosphate/pho 100.0 1.1E-30 2.4E-35 205.6 11.1 133 54-194 2-162 (258)
15 PRK11147 ABC transporter ATPas 100.0 1.4E-29 3.1E-34 229.7 17.5 137 52-195 316-456 (635)
16 COG1125 OpuBA ABC-type proline 100.0 1.6E-30 3.5E-35 206.7 9.5 133 55-195 1-151 (309)
17 COG1135 AbcC ABC-type metal io 100.0 2.1E-29 4.5E-34 205.3 11.4 133 55-195 1-157 (339)
18 COG2274 SunT ABC-type bacterio 100.0 1.2E-28 2.6E-33 223.9 17.5 138 54-194 470-624 (709)
19 PRK15064 ABC transporter ATP-b 100.0 2.9E-28 6.2E-33 217.2 18.8 137 53-195 317-454 (530)
20 COG1131 CcmA ABC-type multidru 100.0 3.8E-29 8.3E-34 207.5 12.3 135 54-194 3-151 (293)
21 PRK11174 cysteine/glutathione 100.0 6.1E-28 1.3E-32 217.4 18.3 135 55-194 349-500 (588)
22 TIGR00960 3a0501s02 Type II (G 100.0 1.9E-28 4.1E-33 194.9 13.0 133 55-195 1-154 (216)
23 PRK13537 nodulation ABC transp 100.0 2.5E-28 5.4E-33 203.9 14.0 135 53-194 5-153 (306)
24 PRK09544 znuC high-affinity zi 100.0 2.3E-28 5E-33 198.9 13.4 133 54-194 3-135 (251)
25 PRK11650 ugpC glycerol-3-phosp 100.0 2.1E-28 4.5E-33 208.1 13.5 132 55-194 3-149 (356)
26 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1E-27 2.2E-32 219.4 18.7 136 54-194 450-603 (686)
27 COG1118 CysA ABC-type sulfate/ 100.0 6.2E-29 1.3E-33 202.2 9.3 131 55-194 2-152 (345)
28 cd03226 ABC_cobalt_CbiO_domain 100.0 1.8E-28 4E-33 193.6 11.8 130 58-194 2-141 (205)
29 PRK11247 ssuB aliphatic sulfon 100.0 4.8E-28 1E-32 197.7 14.4 133 53-194 10-148 (257)
30 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-28 5.1E-33 193.0 11.7 134 53-194 6-160 (263)
31 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-27 2.6E-32 219.7 18.1 137 54-194 476-630 (710)
32 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.4E-28 7.4E-33 193.6 12.6 132 56-195 1-156 (218)
33 PRK13536 nodulation factor exp 100.0 5E-28 1.1E-32 204.6 14.2 135 53-194 39-187 (340)
34 cd03265 ABC_DrrA DrrA is the A 100.0 3E-28 6.6E-33 194.3 12.1 130 56-194 1-146 (220)
35 PRK11432 fbpC ferric transport 100.0 5.1E-28 1.1E-32 205.3 14.2 133 53-194 4-151 (351)
36 cd03268 ABC_BcrA_bacitracin_re 100.0 3.4E-28 7.3E-33 192.4 12.2 130 56-194 1-141 (208)
37 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-28 1E-32 204.8 13.8 133 55-195 1-156 (343)
38 cd03259 ABC_Carb_Solutes_like 100.0 1.9E-28 4.2E-33 194.4 10.8 130 56-194 1-145 (213)
39 TIGR01288 nodI ATP-binding ABC 100.0 4.5E-28 9.8E-33 202.2 13.5 133 53-194 2-150 (303)
40 TIGR01193 bacteriocin_ABC ABC- 100.0 1.4E-27 3E-32 219.2 17.7 137 54-194 472-626 (708)
41 cd03235 ABC_Metallic_Cations A 100.0 1.6E-28 3.5E-33 194.8 10.1 130 58-194 2-147 (213)
42 PRK11629 lolD lipoprotein tran 100.0 8.3E-28 1.8E-32 193.4 14.2 133 54-194 4-160 (233)
43 TIGR03265 PhnT2 putative 2-ami 100.0 6.7E-28 1.5E-32 204.8 14.2 132 54-194 3-149 (353)
44 TIGR02673 FtsE cell division A 100.0 5.1E-28 1.1E-32 192.0 12.6 132 55-194 1-152 (214)
45 cd03261 ABC_Org_Solvent_Resist 100.0 5.5E-28 1.2E-32 194.6 12.7 130 56-194 1-151 (235)
46 PRK10790 putative multidrug tr 100.0 2.8E-27 6.1E-32 213.3 18.4 136 54-194 339-491 (592)
47 PRK09452 potA putrescine/sperm 100.0 7.9E-28 1.7E-32 205.6 13.9 134 52-194 11-159 (375)
48 COG4988 CydD ABC-type transpor 100.0 2.2E-27 4.9E-32 207.0 17.0 138 55-196 320-473 (559)
49 PRK11819 putative ABC transpor 100.0 3.5E-27 7.6E-32 211.3 18.7 135 53-194 322-460 (556)
50 cd03296 ABC_CysA_sulfate_impor 100.0 8.3E-28 1.8E-32 194.1 13.2 131 55-194 2-151 (239)
51 COG1122 CbiO ABC-type cobalt t 100.0 8.5E-28 1.8E-32 193.0 12.9 134 54-194 2-153 (235)
52 PRK13538 cytochrome c biogenes 100.0 9.3E-28 2E-32 189.5 12.6 131 55-194 1-144 (204)
53 PRK10908 cell division protein 100.0 1E-27 2.3E-32 191.4 12.9 133 55-195 1-153 (222)
54 cd03269 ABC_putative_ATPase Th 100.0 9.1E-28 2E-32 190.2 12.5 130 56-194 1-143 (210)
55 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.8E-28 1.7E-32 191.9 12.1 131 56-194 1-146 (220)
56 TIGR03522 GldA_ABC_ATP gliding 100.0 1.4E-27 3.1E-32 199.0 14.1 133 55-194 2-148 (301)
57 TIGR01189 ccmA heme ABC export 100.0 1.1E-27 2.4E-32 188.2 12.6 130 56-194 1-142 (198)
58 cd03266 ABC_NatA_sodium_export 100.0 8.1E-28 1.8E-32 191.4 12.0 132 55-194 1-151 (218)
59 PRK11248 tauB taurine transpor 100.0 1.4E-27 3E-32 194.7 13.6 131 55-194 1-143 (255)
60 PRK13539 cytochrome c biogenes 100.0 1.3E-27 2.7E-32 189.2 12.8 132 55-195 2-143 (207)
61 TIGR00958 3a01208 Conjugate Tr 100.0 6.4E-27 1.4E-31 214.8 19.3 137 54-194 477-632 (711)
62 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-27 3.7E-32 189.9 13.4 132 55-194 1-156 (221)
63 cd03301 ABC_MalK_N The N-termi 100.0 1.4E-27 3.1E-32 189.4 12.8 130 56-194 1-145 (213)
64 PRK10584 putative ABC transpor 100.0 1.4E-27 3.1E-32 191.3 12.8 134 53-194 4-161 (228)
65 PRK11176 lipid transporter ATP 100.0 5.5E-27 1.2E-31 210.9 18.0 137 54-194 340-495 (582)
66 cd03263 ABC_subfamily_A The AB 100.0 1.3E-27 2.8E-32 190.5 12.3 131 56-194 1-148 (220)
67 PRK11153 metN DL-methionine tr 99.9 1.6E-27 3.4E-32 202.0 13.5 132 55-194 1-155 (343)
68 cd03231 ABC_CcmA_heme_exporter 99.9 2.2E-27 4.7E-32 187.1 13.3 131 56-195 1-141 (201)
69 PRK11000 maltose/maltodextrin 99.9 1.8E-27 3.8E-32 203.4 13.8 131 55-194 3-148 (369)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.7E-27 3.6E-32 192.0 12.9 131 55-194 1-147 (236)
71 PRK09536 btuD corrinoid ABC tr 99.9 1.1E-27 2.3E-32 206.2 12.3 132 54-194 2-154 (402)
72 TIGR03375 type_I_sec_LssB type 99.9 6.4E-27 1.4E-31 214.4 18.3 137 54-194 462-616 (694)
73 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8.4E-27 1.8E-31 208.7 18.5 136 52-194 319-458 (552)
74 TIGR02315 ABC_phnC phosphonate 99.9 9.1E-28 2E-32 194.1 11.1 132 55-194 1-160 (243)
75 cd03292 ABC_FtsE_transporter F 99.9 2.1E-27 4.4E-32 188.5 12.8 131 56-194 1-151 (214)
76 cd03219 ABC_Mj1267_LivG_branch 99.9 1.3E-27 2.8E-32 192.4 11.7 130 56-194 1-158 (236)
77 PRK13543 cytochrome c biogenes 99.9 3.4E-27 7.4E-32 187.6 13.9 134 52-194 8-152 (214)
78 PRK11160 cysteine/glutathione 99.9 4.5E-27 9.8E-32 211.3 16.3 137 54-194 337-490 (574)
79 PRK11701 phnK phosphonate C-P 99.9 2.9E-27 6.3E-32 193.0 13.7 135 54-194 5-166 (258)
80 PRK13548 hmuV hemin importer A 99.9 2.7E-27 5.8E-32 193.3 13.3 132 55-195 2-150 (258)
81 cd03256 ABC_PhnC_transporter A 99.9 1.7E-27 3.7E-32 192.2 11.9 131 56-194 1-159 (241)
82 PRK11831 putative ABC transpor 99.9 2.7E-27 5.8E-32 194.4 13.2 133 53-194 5-158 (269)
83 PRK10247 putative ABC transpor 99.9 1.9E-27 4.1E-32 190.5 11.9 133 53-194 5-152 (225)
84 PRK10851 sulfate/thiosulfate t 99.9 1.7E-27 3.8E-32 202.3 12.3 131 55-194 2-151 (353)
85 cd03258 ABC_MetN_methionine_tr 99.9 2.4E-27 5.3E-32 190.5 12.5 132 55-194 1-155 (233)
86 PRK14250 phosphate ABC transpo 99.9 2.3E-27 5.1E-32 191.8 12.4 131 55-194 3-146 (241)
87 PRK13647 cbiO cobalt transport 99.9 2.7E-27 5.8E-32 194.9 12.9 134 54-194 3-153 (274)
88 KOG0057 Mitochondrial Fe/S clu 99.9 2.2E-27 4.7E-32 205.2 12.8 136 54-194 350-502 (591)
89 TIGR02323 CP_lyasePhnK phospho 99.9 3.3E-27 7.2E-32 192.0 12.9 135 54-194 2-163 (253)
90 TIGR02857 CydD thiol reductant 99.9 1.7E-26 3.7E-31 205.7 18.6 137 54-194 319-473 (529)
91 KOG0062 ATPase component of AB 99.9 6.6E-28 1.4E-32 206.9 9.0 188 1-193 308-496 (582)
92 PRK13540 cytochrome c biogenes 99.9 4.9E-27 1.1E-31 184.8 13.4 132 55-195 1-143 (200)
93 TIGR03258 PhnT 2-aminoethylpho 99.9 3.4E-27 7.4E-32 200.9 13.3 131 55-194 5-152 (362)
94 PRK13631 cbiO cobalt transport 99.9 5.1E-27 1.1E-31 197.1 14.1 138 51-194 17-191 (320)
95 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.9E-27 8.4E-32 190.5 12.9 132 56-194 1-150 (242)
96 TIGR02769 nickel_nikE nickel i 99.9 3.7E-27 8.1E-32 193.1 12.8 135 55-194 2-165 (265)
97 TIGR02324 CP_lyasePhnL phospho 99.9 4.6E-27 1E-31 187.8 13.1 133 55-194 1-164 (224)
98 PRK11607 potG putrescine trans 99.9 5.3E-27 1.1E-31 200.7 14.3 133 53-194 17-164 (377)
99 PRK15112 antimicrobial peptide 99.9 2.9E-27 6.3E-32 194.0 12.2 136 54-194 3-164 (267)
100 cd03218 ABC_YhbG The ABC trans 99.9 3.4E-27 7.3E-32 189.5 12.3 130 56-194 1-148 (232)
101 TIGR03608 L_ocin_972_ABC putat 99.9 2.6E-27 5.6E-32 186.9 11.3 128 58-194 1-149 (206)
102 cd03264 ABC_drug_resistance_li 99.9 2.5E-27 5.5E-32 187.7 11.4 130 56-195 1-146 (211)
103 cd03257 ABC_NikE_OppD_transpor 99.9 5.8E-27 1.3E-31 187.5 13.5 135 55-194 1-160 (228)
104 TIGR02203 MsbA_lipidA lipid A 99.9 1.4E-26 3E-31 207.8 17.4 137 54-194 329-484 (571)
105 PRK13657 cyclic beta-1,2-gluca 99.9 1.7E-26 3.8E-31 208.0 17.9 137 54-194 333-486 (588)
106 TIGR03740 galliderm_ABC gallid 99.9 4.1E-27 8.9E-32 188.1 12.3 130 56-194 1-139 (223)
107 PRK13637 cbiO cobalt transport 99.9 7E-27 1.5E-31 193.6 14.1 134 55-194 2-159 (287)
108 PRK13641 cbiO cobalt transport 99.9 6.5E-27 1.4E-31 193.8 13.9 134 55-194 2-160 (287)
109 KOG0058 Peptide exporter, ABC 99.9 6.1E-27 1.3E-31 208.1 14.5 139 53-194 463-619 (716)
110 COG1132 MdlB ABC-type multidru 99.9 1.6E-26 3.4E-31 207.5 17.3 137 54-194 327-480 (567)
111 cd03260 ABC_PstB_phosphate_tra 99.9 4.9E-27 1.1E-31 188.1 12.5 129 56-194 1-156 (227)
112 cd03225 ABC_cobalt_CbiO_domain 99.9 3.1E-27 6.8E-32 187.2 11.2 130 58-195 2-150 (211)
113 PRK13651 cobalt transporter AT 99.9 7E-27 1.5E-31 195.1 13.7 134 55-194 2-180 (305)
114 cd03262 ABC_HisP_GlnQ_permease 99.9 2.8E-27 6E-32 187.6 10.7 130 56-194 1-150 (213)
115 PRK11308 dppF dipeptide transp 99.9 4.7E-27 1E-31 197.8 12.7 137 53-194 3-169 (327)
116 COG0410 LivF ABC-type branched 99.9 2.9E-27 6.4E-32 185.9 10.5 133 54-194 2-151 (237)
117 PRK09493 glnQ glutamine ABC tr 99.9 4.2E-27 9E-32 190.0 11.8 131 55-194 1-151 (240)
118 PRK13634 cbiO cobalt transport 99.9 4.7E-27 1E-31 194.9 12.4 134 55-194 2-160 (290)
119 PRK13643 cbiO cobalt transport 99.9 9.9E-27 2.1E-31 192.8 14.0 134 55-194 1-159 (288)
120 PRK15056 manganese/iron transp 99.9 6.4E-27 1.4E-31 192.4 12.8 134 55-194 6-157 (272)
121 TIGR02204 MsbA_rel ABC transpo 99.9 2.9E-26 6.3E-31 206.0 18.2 137 54-194 336-491 (576)
122 cd03224 ABC_TM1139_LivF_branch 99.9 3.9E-27 8.4E-32 187.9 11.2 130 56-194 1-147 (222)
123 PRK15079 oligopeptide ABC tran 99.9 6.2E-27 1.3E-31 197.4 12.9 137 53-194 6-176 (331)
124 PRK13644 cbiO cobalt transport 99.9 8E-27 1.7E-31 192.1 13.3 133 55-194 1-151 (274)
125 PRK11231 fecE iron-dicitrate t 99.9 6.9E-27 1.5E-31 190.5 12.5 132 55-195 2-154 (255)
126 PRK10575 iron-hydroxamate tran 99.9 5.2E-27 1.1E-31 192.3 11.8 133 53-194 9-162 (265)
127 PRK13646 cbiO cobalt transport 99.9 6.4E-27 1.4E-31 193.7 12.4 134 55-194 2-160 (286)
128 PRK10895 lipopolysaccharide AB 99.9 4.8E-27 1E-31 189.8 11.4 131 55-194 3-152 (241)
129 PRK11264 putative amino-acid A 99.9 7.5E-27 1.6E-31 189.5 12.5 131 55-194 3-159 (250)
130 TIGR03411 urea_trans_UrtD urea 99.9 1.3E-26 2.8E-31 187.3 13.8 132 54-194 1-158 (242)
131 PRK10619 histidine/lysine/argi 99.9 6.6E-27 1.4E-31 190.8 12.1 134 54-195 4-168 (257)
132 PRK13650 cbiO cobalt transport 99.9 1.1E-26 2.3E-31 191.8 13.3 134 54-194 3-155 (279)
133 KOG0927 Predicted transporter 99.9 2.8E-27 6E-32 204.1 9.7 185 3-193 334-523 (614)
134 TIGR03410 urea_trans_UrtE urea 99.9 6.7E-27 1.4E-31 187.6 11.3 131 56-194 1-146 (230)
135 PRK13636 cbiO cobalt transport 99.9 1.6E-26 3.4E-31 191.2 13.8 134 54-194 4-156 (283)
136 PRK13638 cbiO cobalt transport 99.9 7.9E-27 1.7E-31 191.8 11.9 132 55-194 1-151 (271)
137 PRK15439 autoinducer 2 ABC tra 99.9 9.4E-27 2E-31 206.6 13.3 133 53-194 9-155 (510)
138 PRK11300 livG leucine/isoleuci 99.9 1.1E-26 2.4E-31 189.0 12.6 133 54-195 4-169 (255)
139 PRK13652 cbiO cobalt transport 99.9 2E-26 4.3E-31 190.0 14.2 134 54-194 2-152 (277)
140 PRK13632 cbiO cobalt transport 99.9 1.3E-26 2.9E-31 190.4 13.1 135 53-194 5-157 (271)
141 PRK11124 artP arginine transpo 99.9 1E-26 2.2E-31 188.0 12.1 131 55-194 2-156 (242)
142 PRK10253 iron-enterobactin tra 99.9 8.3E-27 1.8E-31 191.1 11.4 133 53-194 5-158 (265)
143 TIGR01846 type_I_sec_HlyB type 99.9 4.7E-26 1E-30 208.7 17.5 137 54-194 454-608 (694)
144 COG1137 YhbG ABC-type (unclass 99.9 3.2E-28 6.8E-33 187.5 2.6 133 54-195 3-155 (243)
145 PRK10522 multidrug transporter 99.9 3.6E-26 7.8E-31 204.4 16.0 133 54-194 321-464 (547)
146 PRK13649 cbiO cobalt transport 99.9 2.1E-26 4.6E-31 190.0 13.5 133 55-194 2-160 (280)
147 PRK13639 cbiO cobalt transport 99.9 2.3E-26 5E-31 189.4 13.7 132 55-194 1-152 (275)
148 PRK10419 nikE nickel transport 99.9 1.7E-26 3.6E-31 189.6 12.7 135 55-194 3-166 (268)
149 PRK10070 glycine betaine trans 99.9 2.7E-26 5.8E-31 197.4 14.5 117 70-194 42-179 (400)
150 PRK13635 cbiO cobalt transport 99.9 1.9E-26 4.2E-31 190.3 13.0 134 54-194 4-155 (279)
151 PRK13541 cytochrome c biogenes 99.9 2.3E-26 5.1E-31 180.3 12.7 131 55-195 1-139 (195)
152 COG0411 LivG ABC-type branched 99.9 2.2E-27 4.8E-32 188.0 6.8 132 54-194 3-164 (250)
153 COG4987 CydC ABC-type transpor 99.9 9.3E-27 2E-31 201.0 11.2 137 55-194 336-489 (573)
154 TIGR03005 ectoine_ehuA ectoine 99.9 1.2E-26 2.6E-31 188.7 11.3 130 56-194 1-161 (252)
155 TIGR01188 drrA daunorubicin re 99.9 1E-26 2.2E-31 193.9 10.9 124 64-194 2-139 (302)
156 TIGR00972 3a0107s01c2 phosphat 99.9 2.7E-26 5.7E-31 186.1 12.7 131 55-194 1-159 (247)
157 TIGR01842 type_I_sec_PrtD type 99.9 1.3E-25 2.7E-30 200.8 18.3 137 54-194 315-469 (544)
158 PRK14247 phosphate ABC transpo 99.9 2.1E-26 4.6E-31 187.0 12.1 132 55-194 3-161 (250)
159 PRK13633 cobalt transporter AT 99.9 2.8E-26 6.1E-31 189.4 13.0 134 54-194 3-159 (280)
160 TIGR01978 sufC FeS assembly AT 99.9 1.8E-26 3.9E-31 186.4 11.5 131 56-194 1-159 (243)
161 TIGR02982 heterocyst_DevA ABC 99.9 3.2E-26 6.9E-31 182.7 12.7 131 56-194 2-156 (220)
162 TIGR03873 F420-0_ABC_ATP propo 99.9 2E-26 4.3E-31 187.8 11.8 131 56-195 2-153 (256)
163 PRK14242 phosphate transporter 99.9 4.2E-26 9.2E-31 185.5 13.5 133 53-194 4-164 (253)
164 TIGR01192 chvA glucan exporter 99.9 2.1E-25 4.5E-30 201.0 19.2 138 54-194 333-486 (585)
165 COG4559 ABC-type hemin transpo 99.9 1.1E-26 2.4E-31 180.6 9.1 132 55-193 1-149 (259)
166 PRK13645 cbiO cobalt transport 99.9 5.5E-26 1.2E-30 188.4 13.8 135 54-194 5-165 (289)
167 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.9E-26 6.3E-31 181.7 11.6 129 56-195 1-144 (211)
168 PLN03232 ABC transporter C fam 99.9 9.8E-26 2.1E-30 219.9 17.7 136 54-194 1233-1386(1495)
169 PRK10418 nikD nickel transport 99.9 7.9E-26 1.7E-30 184.2 14.4 133 55-194 4-155 (254)
170 PRK13640 cbiO cobalt transport 99.9 4.6E-26 9.9E-31 188.3 13.1 135 53-194 3-158 (282)
171 PRK15064 ABC transporter ATP-b 99.9 3.6E-26 7.9E-31 203.7 13.4 132 55-194 1-170 (530)
172 PRK09984 phosphonate/organopho 99.9 3.3E-26 7.2E-31 187.1 11.9 132 54-194 3-167 (262)
173 PRK11819 putative ABC transpor 99.9 4.9E-26 1.1E-30 203.9 14.0 134 53-195 4-179 (556)
174 PRK10762 D-ribose transporter 99.9 2E-26 4.3E-31 204.1 11.1 132 54-194 3-156 (501)
175 PRK11022 dppD dipeptide transp 99.9 4.1E-26 8.8E-31 192.1 12.3 135 55-194 3-168 (326)
176 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.2E-26 4.9E-31 188.9 10.3 129 57-194 26-175 (269)
177 PLN03130 ABC transporter C fam 99.9 1.7E-25 3.7E-30 219.0 18.2 136 54-194 1236-1389(1622)
178 COG4181 Predicted ABC-type tra 99.9 2.8E-26 6.1E-31 173.1 9.9 135 54-194 5-161 (228)
179 PRK14254 phosphate ABC transpo 99.9 9.5E-26 2.1E-30 186.7 14.0 135 51-194 35-195 (285)
180 PRK11614 livF leucine/isoleuci 99.9 3.9E-26 8.4E-31 184.0 11.3 133 54-195 4-153 (237)
181 PRK13648 cbiO cobalt transport 99.9 9.1E-26 2E-30 185.3 13.7 135 53-194 5-157 (269)
182 PRK15093 antimicrobial peptide 99.9 4.1E-26 8.9E-31 192.4 11.8 136 54-194 2-173 (330)
183 PRK10261 glutathione transport 99.9 4.3E-26 9.4E-31 206.6 12.6 137 53-194 311-478 (623)
184 TIGR01186 proV glycine betaine 99.9 3.8E-26 8.2E-31 194.3 11.5 122 64-194 2-144 (363)
185 cd03245 ABCC_bacteriocin_expor 99.9 9.2E-26 2E-30 179.8 13.0 131 55-194 2-155 (220)
186 PRK09700 D-allose transporter 99.9 2.7E-26 5.9E-31 203.7 11.0 132 54-194 4-160 (510)
187 PRK13547 hmuV hemin importer A 99.9 4.7E-26 1E-30 187.4 11.6 131 55-194 1-160 (272)
188 PRK10771 thiQ thiamine transpo 99.9 5E-26 1.1E-30 182.9 11.4 129 55-194 1-144 (232)
189 COG1117 PstB ABC-type phosphat 99.9 2.2E-26 4.8E-31 179.0 9.0 133 53-194 5-164 (253)
190 cd03300 ABC_PotA_N PotA is an 99.9 7.6E-26 1.7E-30 181.9 12.5 130 56-194 1-145 (232)
191 cd03250 ABCC_MRP_domain1 Domai 99.9 1.1E-25 2.3E-30 177.7 13.0 129 56-195 1-143 (204)
192 PRK11144 modC molybdate transp 99.9 7.6E-26 1.7E-30 192.3 13.1 128 55-194 1-143 (352)
193 PRK14235 phosphate transporter 99.9 1.1E-25 2.3E-30 184.7 13.5 133 53-194 17-178 (267)
194 PRK14273 phosphate ABC transpo 99.9 9.2E-26 2E-30 183.7 13.0 133 53-194 5-165 (254)
195 PRK14259 phosphate ABC transpo 99.9 8.7E-26 1.9E-30 185.5 13.0 134 53-195 11-170 (269)
196 TIGR01277 thiQ thiamine ABC tr 99.9 9.3E-26 2E-30 179.2 12.7 128 56-194 1-143 (213)
197 PRK14241 phosphate transporter 99.9 1E-25 2.3E-30 183.8 13.3 133 54-194 3-163 (258)
198 PRK10636 putative ABC transpor 99.9 8.9E-26 1.9E-30 204.9 14.1 133 55-194 1-164 (638)
199 COG1123 ATPase components of v 99.9 6E-26 1.3E-30 198.4 12.4 138 52-194 277-444 (539)
200 PRK14267 phosphate ABC transpo 99.9 7.9E-26 1.7E-30 183.9 12.2 133 54-194 3-164 (253)
201 TIGR00957 MRP_assoc_pro multi 99.9 2.9E-25 6.3E-30 216.9 18.3 136 54-194 1283-1436(1522)
202 PRK13549 xylose transporter AT 99.9 4.1E-26 8.8E-31 202.4 11.2 132 54-194 4-158 (506)
203 PRK11288 araG L-arabinose tran 99.9 9E-26 1.9E-30 200.0 13.2 132 54-194 3-155 (501)
204 PRK14248 phosphate ABC transpo 99.9 1.9E-25 4.2E-30 183.2 14.0 134 52-194 18-179 (268)
205 PRK14268 phosphate ABC transpo 99.9 2.4E-25 5.3E-30 181.7 14.5 133 53-194 10-169 (258)
206 cd03254 ABCC_Glucan_exporter_l 99.9 1.5E-25 3.1E-30 179.7 12.9 132 55-194 2-154 (229)
207 PTZ00265 multidrug resistance 99.9 2E-25 4.2E-30 216.9 16.2 137 54-194 1164-1373(1466)
208 PRK13642 cbiO cobalt transport 99.9 1.7E-25 3.7E-30 184.4 13.5 133 54-194 3-155 (277)
209 PRK10789 putative multidrug tr 99.9 6.1E-25 1.3E-29 197.3 18.2 137 54-194 312-466 (569)
210 cd03299 ABC_ModC_like Archeal 99.9 1.5E-25 3.2E-30 180.6 12.8 129 56-194 1-144 (235)
211 TIGR01166 cbiO cobalt transpor 99.9 7.8E-26 1.7E-30 176.6 10.8 120 67-194 3-142 (190)
212 COG4555 NatA ABC-type Na+ tran 99.9 8.9E-27 1.9E-31 179.7 5.2 134 55-194 1-148 (245)
213 cd03252 ABCC_Hemolysin The ABC 99.9 1.5E-25 3.3E-30 180.5 12.6 131 56-194 1-153 (237)
214 PRK10744 pstB phosphate transp 99.9 1.2E-25 2.7E-30 183.6 12.2 133 53-194 11-171 (260)
215 PRK14237 phosphate transporter 99.9 2.5E-25 5.4E-30 182.5 13.9 133 53-194 18-178 (267)
216 PRK10261 glutathione transport 99.9 1.2E-25 2.5E-30 203.8 13.0 138 52-194 9-183 (623)
217 COG4152 ABC-type uncharacteriz 99.9 4.4E-26 9.6E-31 180.5 8.8 132 55-193 2-144 (300)
218 COG4618 ArpD ABC-type protease 99.9 3.8E-25 8.3E-30 189.9 15.1 138 54-194 333-487 (580)
219 cd03223 ABCD_peroxisomal_ALDP 99.9 1.7E-25 3.7E-30 171.4 11.6 106 56-194 1-106 (166)
220 PRK14269 phosphate ABC transpo 99.9 1.7E-25 3.7E-30 181.4 12.2 132 55-195 2-158 (246)
221 COG4133 CcmA ABC-type transpor 99.9 3.5E-26 7.5E-31 174.6 7.5 134 55-197 2-148 (209)
222 COG4619 ABC-type uncharacteriz 99.9 8.5E-27 1.8E-31 175.4 4.0 129 56-193 4-147 (223)
223 PRK09473 oppD oligopeptide tra 99.9 2.3E-25 4.9E-30 187.8 13.0 138 52-194 9-176 (330)
224 PRK14270 phosphate ABC transpo 99.9 2.9E-25 6.3E-30 180.5 13.2 133 53-194 2-162 (251)
225 COG0488 Uup ATPase components 99.9 1.4E-25 3E-30 198.2 12.2 131 54-194 2-168 (530)
226 PRK14274 phosphate ABC transpo 99.9 3.6E-25 7.8E-30 180.7 13.6 134 52-194 9-170 (259)
227 PRK14256 phosphate ABC transpo 99.9 4E-25 8.6E-30 179.7 13.8 133 54-194 3-163 (252)
228 PRK15134 microcin C ABC transp 99.9 1E-25 2.2E-30 200.8 11.1 136 53-194 273-440 (529)
229 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.4E-25 5.1E-30 199.4 13.4 132 54-194 3-176 (552)
230 TIGR00968 3a0106s01 sulfate AB 99.9 2.8E-25 6.1E-30 179.2 12.6 130 56-194 1-145 (237)
231 PRK14240 phosphate transporter 99.9 3.3E-25 7.2E-30 179.9 13.0 131 55-194 3-161 (250)
232 PRK14262 phosphate ABC transpo 99.9 3.2E-25 7E-30 180.0 12.9 131 55-194 3-161 (250)
233 TIGR03269 met_CoM_red_A2 methy 99.9 1.7E-25 3.7E-30 199.0 12.2 135 53-194 277-442 (520)
234 PRK14238 phosphate transporter 99.9 3.2E-25 7E-30 182.3 12.8 134 52-194 21-182 (271)
235 TIGR02633 xylG D-xylose ABC tr 99.9 1.6E-25 3.4E-30 198.4 11.7 133 55-195 1-157 (500)
236 PRK14246 phosphate ABC transpo 99.9 2.9E-25 6.4E-30 181.2 12.4 134 53-194 8-168 (257)
237 cd03244 ABCC_MRP_domain2 Domai 99.9 3.4E-25 7.4E-30 176.6 12.4 130 56-194 3-154 (221)
238 PRK14275 phosphate ABC transpo 99.9 4.7E-25 1E-29 182.7 13.6 134 52-194 36-197 (286)
239 cd03248 ABCC_TAP TAP, the Tran 99.9 3.2E-25 6.9E-30 177.5 12.2 133 53-194 9-165 (226)
240 PRK13549 xylose transporter AT 99.9 1.6E-25 3.5E-30 198.6 11.2 137 53-194 257-420 (506)
241 KOG0056 Heavy metal exporter H 99.9 1.7E-25 3.6E-30 191.6 10.8 137 53-193 535-688 (790)
242 PRK09580 sufC cysteine desulfu 99.9 4.3E-25 9.3E-30 179.0 12.7 134 55-194 1-160 (248)
243 PRK15134 microcin C ABC transp 99.9 2.6E-25 5.6E-30 198.2 12.5 137 53-194 3-171 (529)
244 CHL00131 ycf16 sulfate ABC tra 99.9 6E-25 1.3E-29 178.6 13.3 134 53-194 5-166 (252)
245 cd03253 ABCC_ATM1_transporter 99.9 4.9E-25 1.1E-29 177.4 12.6 131 56-194 1-152 (236)
246 TIGR01194 cyc_pep_trnsptr cycl 99.9 9.7E-25 2.1E-29 195.5 15.7 134 54-194 336-485 (555)
247 PRK14271 phosphate ABC transpo 99.9 3.6E-25 7.7E-30 182.5 11.9 133 53-194 19-178 (276)
248 COG4525 TauB ABC-type taurine 99.9 3.4E-25 7.4E-30 170.4 10.9 132 55-194 3-147 (259)
249 cd03297 ABC_ModC_molybdenum_tr 99.9 2.5E-25 5.4E-30 176.7 10.6 123 60-194 5-146 (214)
250 PTZ00243 ABC transporter; Prov 99.9 1.9E-24 4.2E-29 211.2 19.0 136 54-194 1307-1460(1560)
251 PRK14239 phosphate transporter 99.9 8.2E-25 1.8E-29 177.8 13.7 132 54-194 4-163 (252)
252 COG3840 ThiQ ABC-type thiamine 99.9 1.1E-25 2.4E-30 171.3 7.9 128 55-193 1-143 (231)
253 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.2E-25 9.1E-30 178.0 11.8 131 56-194 1-154 (238)
254 cd03290 ABCC_SUR1_N The SUR do 99.9 7.9E-25 1.7E-29 174.4 13.2 129 57-194 2-155 (218)
255 TIGR02142 modC_ABC molybdenum 99.9 3.6E-25 7.7E-30 188.4 11.9 124 60-194 4-146 (354)
256 PRK14272 phosphate ABC transpo 99.9 5.2E-25 1.1E-29 178.9 12.1 132 55-194 4-163 (252)
257 cd03251 ABCC_MsbA MsbA is an e 99.9 8.7E-25 1.9E-29 175.7 13.2 131 56-195 1-154 (234)
258 PRK14265 phosphate ABC transpo 99.9 9.8E-25 2.1E-29 179.7 13.8 134 52-194 17-176 (274)
259 PRK09700 D-allose transporter 99.9 3E-25 6.4E-30 197.0 11.5 134 53-194 263-424 (510)
260 cd03267 ABC_NatA_like Similar 99.9 4.4E-25 9.5E-30 178.0 11.4 123 63-194 29-168 (236)
261 PRK14251 phosphate ABC transpo 99.9 8.4E-25 1.8E-29 177.7 13.1 132 54-194 3-162 (251)
262 PRK14249 phosphate ABC transpo 99.9 1.1E-24 2.4E-29 177.1 13.5 132 54-194 3-162 (251)
263 PRK10938 putative molybdenum t 99.9 2.8E-25 6E-30 196.3 10.8 137 52-194 257-416 (490)
264 PRK14245 phosphate ABC transpo 99.9 1.1E-24 2.5E-29 176.8 13.5 132 54-194 2-161 (250)
265 PRK10938 putative molybdenum t 99.9 3.1E-25 6.8E-30 196.0 11.0 131 55-194 3-150 (490)
266 PRK14236 phosphate transporter 99.9 1.3E-24 2.9E-29 178.7 14.0 133 53-194 23-183 (272)
267 cd03234 ABCG_White The White s 99.9 5.1E-25 1.1E-29 176.4 11.2 132 55-194 3-158 (226)
268 PRK14252 phosphate ABC transpo 99.9 1.5E-24 3.2E-29 177.7 14.1 136 51-195 12-177 (265)
269 TIGR00954 3a01203 Peroxysomal 99.9 9.9E-25 2.1E-29 198.8 14.0 136 54-194 450-597 (659)
270 PRK14255 phosphate ABC transpo 99.9 1.4E-24 3.1E-29 176.4 13.4 133 53-194 3-163 (252)
271 PRK14243 phosphate transporter 99.9 7.2E-25 1.6E-29 179.5 11.7 133 53-194 8-166 (264)
272 COG4604 CeuD ABC-type enteroch 99.9 2.9E-26 6.3E-31 176.5 3.0 131 55-192 1-148 (252)
273 PRK13409 putative ATPase RIL; 99.9 7.7E-25 1.7E-29 196.9 12.7 132 52-195 337-469 (590)
274 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.1E-24 4.6E-29 170.6 13.6 124 54-194 5-140 (207)
275 PRK14253 phosphate ABC transpo 99.9 1.3E-24 2.9E-29 176.3 12.7 131 55-194 3-160 (249)
276 TIGR02633 xylG D-xylose ABC tr 99.9 4.7E-25 1E-29 195.3 10.9 137 53-194 255-418 (500)
277 PRK10982 galactose/methyl gala 99.9 2.9E-25 6.2E-30 196.3 9.3 128 58-194 1-149 (491)
278 TIGR03269 met_CoM_red_A2 methy 99.9 8.9E-25 1.9E-29 194.4 12.4 131 56-194 1-183 (520)
279 cd03237 ABC_RNaseL_inhibitor_d 99.9 7.3E-25 1.6E-29 177.8 10.9 123 64-195 2-131 (246)
280 PRK14260 phosphate ABC transpo 99.9 1.2E-24 2.7E-29 177.6 12.2 132 54-194 6-165 (259)
281 cd03214 ABC_Iron-Siderophores_ 99.9 2.7E-25 5.9E-30 172.3 7.8 112 57-194 1-112 (180)
282 PRK14264 phosphate ABC transpo 99.9 2.1E-24 4.7E-29 180.2 13.5 135 52-195 42-216 (305)
283 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.1E-24 4.6E-29 177.7 12.6 135 55-195 2-154 (275)
284 COG1119 ModF ABC-type molybden 99.9 1.6E-25 3.4E-30 177.6 5.6 136 52-194 28-186 (257)
285 TIGR03415 ABC_choXWV_ATP choli 99.9 7.8E-25 1.7E-29 187.2 10.3 126 60-194 29-179 (382)
286 PRK14261 phosphate ABC transpo 99.9 2.4E-24 5.2E-29 175.2 12.6 133 53-194 4-164 (253)
287 PRK11147 ABC transporter ATPas 99.9 2.6E-24 5.7E-29 195.4 14.1 129 55-194 3-171 (635)
288 PRK14244 phosphate ABC transpo 99.9 2.2E-24 4.8E-29 175.3 12.2 130 56-194 6-164 (251)
289 COG1129 MglA ABC-type sugar tr 99.9 1.3E-24 2.8E-29 188.9 11.4 134 53-195 6-161 (500)
290 PRK14257 phosphate ABC transpo 99.9 6.2E-24 1.3E-28 179.0 14.4 135 52-194 77-240 (329)
291 PRK14263 phosphate ABC transpo 99.9 4.8E-24 1E-28 174.4 13.2 134 53-195 6-165 (261)
292 KOG0055 Multidrug/pheromone ex 99.9 1.3E-24 2.8E-29 202.7 11.0 139 53-194 348-504 (1228)
293 TIGR01271 CFTR_protein cystic 99.9 8.4E-24 1.8E-28 206.3 17.2 135 54-194 1216-1368(1490)
294 PRK14258 phosphate ABC transpo 99.9 6.1E-24 1.3E-28 173.7 13.7 132 54-194 6-165 (261)
295 cd03233 ABC_PDR_domain1 The pl 99.9 2.8E-24 6E-29 169.5 11.3 115 55-194 3-133 (202)
296 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.7E-24 5.9E-29 172.2 11.3 129 56-194 23-157 (224)
297 COG4608 AppF ABC-type oligopep 99.9 1.6E-24 3.5E-29 174.6 9.2 114 54-194 3-124 (268)
298 COG3845 ABC-type uncharacteriz 99.9 2.4E-24 5.3E-29 184.6 10.3 131 54-193 3-154 (501)
299 PRK14266 phosphate ABC transpo 99.9 5.2E-24 1.1E-28 172.9 11.8 131 55-194 3-161 (250)
300 COG4167 SapF ABC-type antimicr 99.9 2.1E-24 4.6E-29 164.7 8.4 136 54-194 3-164 (267)
301 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 4.7E-24 1E-28 159.8 10.1 70 56-126 1-70 (144)
302 cd03215 ABC_Carb_Monos_II This 99.9 7.1E-24 1.5E-28 164.6 11.1 71 53-128 2-84 (182)
303 PLN03130 ABC transporter C fam 99.9 1.5E-23 3.4E-28 205.3 16.0 135 54-194 613-755 (1622)
304 cd03230 ABC_DR_subfamily_A Thi 99.9 5.9E-24 1.3E-28 163.8 10.4 72 56-128 1-82 (173)
305 PLN03232 ABC transporter C fam 99.9 1.4E-23 3.1E-28 204.9 15.6 136 54-194 613-755 (1495)
306 cd03247 ABCC_cytochrome_bd The 99.9 7.4E-24 1.6E-28 163.9 10.9 102 56-194 1-113 (178)
307 PTZ00265 multidrug resistance 99.9 1.3E-23 2.9E-28 204.1 15.0 137 55-194 382-594 (1466)
308 TIGR02770 nickel_nikD nickel i 99.9 5E-24 1.1E-28 171.1 10.0 119 71-194 1-140 (230)
309 cd03229 ABC_Class3 This class 99.9 4.2E-24 9.1E-29 165.3 9.1 61 56-117 1-61 (178)
310 COG4107 PhnK ABC-type phosphon 99.9 5.5E-24 1.2E-28 161.3 9.3 135 53-193 4-165 (258)
311 PRK10762 D-ribose transporter 99.9 7E-24 1.5E-28 187.9 11.5 131 53-194 255-410 (501)
312 TIGR01184 ntrCD nitrate transp 99.9 4.4E-24 9.5E-29 171.6 9.1 115 72-194 1-129 (230)
313 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.7E-23 5.9E-28 171.7 13.9 129 52-194 36-174 (282)
314 cd03288 ABCC_SUR2 The SUR doma 99.9 1.8E-23 4E-28 170.6 12.5 133 53-194 17-171 (257)
315 TIGR01257 rim_protein retinal- 99.9 1.9E-23 4.2E-28 205.4 14.9 136 53-194 926-1076(2272)
316 KOG0055 Multidrug/pheromone ex 99.9 9.3E-24 2E-28 197.0 11.6 136 54-193 986-1140(1228)
317 PRK11288 araG L-arabinose tran 99.9 7.3E-24 1.6E-28 187.8 10.5 133 53-195 255-412 (501)
318 PRK13545 tagH teichoic acids e 99.9 3.1E-23 6.7E-28 182.0 13.8 131 53-194 19-158 (549)
319 cd03213 ABCG_EPDR ABCG transpo 99.9 2E-23 4.4E-28 163.6 11.4 76 54-129 2-92 (194)
320 cd03246 ABCC_Protease_Secretio 99.9 1.6E-23 3.5E-28 161.3 10.6 73 56-128 1-85 (173)
321 PRK15439 autoinducer 2 ABC tra 99.9 1.3E-23 2.7E-28 186.6 11.4 132 52-194 265-418 (510)
322 PRK10982 galactose/methyl gala 99.9 2.5E-23 5.5E-28 183.9 12.7 134 53-194 248-406 (491)
323 TIGR00957 MRP_assoc_pro multi 99.9 8.3E-23 1.8E-27 199.8 17.5 135 54-194 635-775 (1522)
324 TIGR01257 rim_protein retinal- 99.9 3.2E-23 7E-28 203.9 14.3 136 53-194 1935-2085(2272)
325 PRK03695 vitamin B12-transport 99.9 1.1E-23 2.3E-28 171.2 9.1 125 57-195 2-142 (248)
326 PRK13546 teichoic acids export 99.9 5.2E-23 1.1E-27 168.6 13.2 116 69-194 37-158 (264)
327 cd03228 ABCC_MRP_Like The MRP 99.9 2.6E-23 5.7E-28 159.9 10.7 73 56-128 1-85 (171)
328 cd03216 ABC_Carb_Monos_I This 99.9 1.7E-23 3.8E-28 159.8 9.6 61 56-117 1-61 (163)
329 PF00005 ABC_tran: ABC transpo 99.9 5.5E-24 1.2E-28 157.3 6.5 108 72-194 1-123 (137)
330 cd03232 ABC_PDR_domain2 The pl 99.9 3.8E-23 8.2E-28 161.8 11.2 109 55-194 3-123 (192)
331 COG0444 DppD ABC-type dipeptid 99.9 1E-22 2.2E-27 167.5 12.9 134 55-193 1-167 (316)
332 PLN03211 ABC transporter G-25; 99.9 4.4E-23 9.6E-28 187.6 11.8 135 58-194 71-221 (659)
333 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.3E-23 7.2E-28 163.1 9.1 72 56-128 1-86 (200)
334 KOG0066 eIF2-interacting prote 99.9 1.9E-23 4.2E-28 177.3 7.9 149 39-194 571-719 (807)
335 PRK10535 macrolide transporter 99.9 1.6E-22 3.4E-27 184.1 14.2 134 54-195 3-160 (648)
336 COG4598 HisP ABC-type histidin 99.9 6.7E-24 1.4E-28 161.5 3.3 132 54-194 5-167 (256)
337 COG1123 ATPase components of v 99.9 1.8E-22 3.9E-27 176.7 12.3 136 54-194 4-169 (539)
338 TIGR03771 anch_rpt_ABC anchore 99.9 1.4E-22 3.1E-27 162.0 9.7 112 77-194 1-128 (223)
339 cd03236 ABC_RNaseL_inhibitor_d 99.9 8.8E-23 1.9E-27 166.4 7.7 126 59-194 4-154 (255)
340 COG4778 PhnL ABC-type phosphon 99.9 8E-23 1.7E-27 154.3 6.5 132 55-193 4-166 (235)
341 PRK15177 Vi polysaccharide exp 99.9 2.9E-22 6.3E-27 159.3 9.4 114 70-194 1-119 (213)
342 KOG0054 Multidrug resistance-a 99.9 6.3E-22 1.4E-26 188.0 13.0 138 52-194 1135-1290(1381)
343 COG4148 ModC ABC-type molybdat 99.9 1.7E-22 3.7E-27 162.9 7.8 114 73-194 15-143 (352)
344 cd03222 ABC_RNaseL_inhibitor T 99.9 2.4E-22 5.2E-27 155.4 8.1 66 59-127 4-69 (177)
345 COG4175 ProV ABC-type proline/ 99.9 3.4E-22 7.4E-27 163.5 9.0 117 71-195 43-180 (386)
346 TIGR01271 CFTR_protein cystic 99.9 9.1E-22 2E-26 192.2 13.0 119 69-194 439-563 (1490)
347 KOG0054 Multidrug resistance-a 99.9 6.4E-21 1.4E-25 181.3 18.0 137 52-194 515-658 (1381)
348 COG5265 ATM1 ABC-type transpor 99.9 6.4E-22 1.4E-26 167.0 10.0 137 54-193 261-413 (497)
349 COG1134 TagH ABC-type polysacc 99.9 7.1E-22 1.5E-26 156.8 8.6 119 68-195 39-163 (249)
350 PLN03073 ABC transporter F fam 99.9 1.1E-20 2.3E-25 173.2 17.0 128 53-195 175-360 (718)
351 COG0396 sufC Cysteine desulfur 99.9 3E-21 6.5E-26 151.9 11.3 135 54-193 2-158 (251)
352 COG4161 ArtP ABC-type arginine 99.9 4.8E-22 1E-26 149.2 6.5 131 55-194 2-156 (242)
353 COG4674 Uncharacterized ABC-ty 99.9 9.6E-22 2.1E-26 151.3 7.8 133 54-193 4-161 (249)
354 COG4172 ABC-type uncharacteriz 99.9 3.5E-21 7.5E-26 162.0 11.4 136 52-193 273-440 (534)
355 TIGR00956 3a01205 Pleiotropic 99.9 3.8E-21 8.2E-26 186.7 13.3 139 54-194 758-916 (1394)
356 cd03238 ABC_UvrA The excision 99.9 1.5E-21 3.3E-26 150.7 8.3 91 68-195 7-103 (176)
357 PRK13409 putative ATPase RIL; 99.9 1E-21 2.2E-26 176.8 8.3 125 60-194 78-227 (590)
358 COG4136 ABC-type uncharacteriz 99.8 2.9E-21 6.4E-26 143.2 8.3 132 55-193 2-148 (213)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.8 9E-21 1.9E-25 143.7 9.5 59 58-117 2-60 (157)
360 COG4615 PvdE ABC-type sideroph 99.8 2.2E-20 4.9E-25 156.8 10.7 135 53-192 320-461 (546)
361 COG4178 ABC-type uncharacteriz 99.8 1.9E-19 4E-24 159.6 15.7 132 53-193 390-529 (604)
362 COG4586 ABC-type uncharacteriz 99.8 5E-21 1.1E-25 153.9 5.0 118 70-193 38-170 (325)
363 TIGR00955 3a01204 The Eye Pigm 99.8 4.8E-20 1E-24 167.1 11.2 126 68-194 37-181 (617)
364 KOG0061 Transporter, ABC super 99.8 2.9E-19 6.2E-24 161.5 13.7 137 55-192 25-183 (613)
365 PLN03140 ABC transporter G fam 99.8 1.5E-19 3.3E-24 175.7 12.2 139 55-194 867-1034(1470)
366 TIGR00956 3a01205 Pleiotropic 99.8 2.3E-19 5E-24 174.4 11.8 121 68-194 73-224 (1394)
367 COG1101 PhnK ABC-type uncharac 99.8 1.2E-19 2.5E-24 141.8 7.1 133 56-193 2-162 (263)
368 PTZ00243 ABC transporter; Prov 99.8 3.7E-19 8.1E-24 174.4 11.6 116 68-194 672-797 (1560)
369 TIGR01187 potA spermidine/putr 99.8 2.8E-19 6E-24 150.6 8.5 100 87-194 1-115 (325)
370 COG4172 ABC-type uncharacteriz 99.8 2.2E-18 4.7E-23 145.3 11.5 137 53-194 4-172 (534)
371 PLN03140 ABC transporter G fam 99.8 1.1E-18 2.3E-23 169.8 10.0 121 69-194 178-351 (1470)
372 KOG0059 Lipid exporter ABCA1 a 99.8 1.2E-18 2.6E-23 163.3 8.2 134 54-193 563-712 (885)
373 KOG0060 Long-chain acyl-CoA tr 99.8 3.6E-18 7.9E-23 149.0 10.3 135 51-194 429-585 (659)
374 COG1245 Predicted ATPase, RNas 99.8 3E-18 6.5E-23 146.2 9.4 129 53-194 340-470 (591)
375 cd03270 ABC_UvrA_I The excisio 99.7 7.5E-18 1.6E-22 135.1 9.5 120 67-194 6-152 (226)
376 cd03278 ABC_SMC_barmotin Barmo 99.7 1.4E-17 3.1E-22 130.9 5.7 97 73-193 14-127 (197)
377 KOG0064 Peroxisomal long-chain 99.7 4.3E-17 9.3E-22 141.2 8.4 131 55-193 481-626 (728)
378 KOG0062 ATPase component of AB 99.7 6.1E-17 1.3E-21 139.8 7.6 128 54-194 79-213 (582)
379 KOG2355 Predicted ABC-type tra 99.7 1.7E-15 3.6E-20 118.0 11.5 131 53-192 11-160 (291)
380 COG4138 BtuD ABC-type cobalami 99.6 1.3E-16 2.8E-21 121.4 4.8 124 55-192 3-138 (248)
381 KOG0927 Predicted transporter 99.6 2.6E-16 5.5E-21 136.6 4.9 129 53-193 73-235 (614)
382 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2.6E-15 5.7E-20 121.3 7.7 43 56-105 4-46 (243)
383 COG2401 ABC-type ATPase fused 99.5 1.4E-14 3E-19 122.9 7.4 119 69-195 396-523 (593)
384 cd03279 ABC_sbcCD SbcCD and ot 99.5 1.1E-14 2.5E-19 115.6 6.1 120 55-194 5-138 (213)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.5 2.1E-14 4.5E-19 116.8 3.8 107 82-193 25-180 (251)
386 COG3845 ABC-type uncharacteriz 99.5 9.8E-13 2.1E-17 113.6 13.4 139 51-194 253-418 (501)
387 cd03271 ABC_UvrA_II The excisi 99.5 3.1E-14 6.8E-19 116.3 3.9 32 71-102 10-41 (261)
388 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.5E-15 3.2E-20 120.8 -4.6 123 56-194 6-142 (212)
389 KOG0065 Pleiotropic drug resis 99.4 5.4E-13 1.2E-17 126.0 10.4 137 54-192 786-942 (1391)
390 COG1129 MglA ABC-type sugar tr 99.4 1.9E-12 4E-17 113.3 10.0 133 52-194 260-416 (500)
391 cd03240 ABC_Rad50 The catalyti 99.4 1.2E-12 2.5E-17 103.5 6.0 94 76-189 17-125 (204)
392 cd00820 PEPCK_HprK Phosphoenol 99.3 2.9E-12 6.3E-17 90.8 6.7 43 69-117 2-44 (107)
393 KOG0066 eIF2-interacting prote 99.3 2.3E-12 4.9E-17 110.4 6.9 128 55-194 264-427 (807)
394 KOG0063 RNAse L inhibitor, ABC 99.3 3.1E-12 6.6E-17 109.1 7.5 123 63-194 343-471 (592)
395 cd03276 ABC_SMC6_euk Eukaryoti 99.3 4.2E-12 9.1E-17 99.9 7.5 102 72-194 12-124 (198)
396 cd03275 ABC_SMC1_euk Eukaryoti 99.3 8.1E-13 1.8E-17 107.3 3.3 32 83-114 23-54 (247)
397 COG1245 Predicted ATPase, RNas 99.3 1.5E-12 3.2E-17 111.7 3.9 124 60-193 79-227 (591)
398 cd03280 ABC_MutS2 MutS2 homolo 99.2 8.5E-12 1.8E-16 98.2 3.3 52 71-128 16-76 (200)
399 TIGR03238 dnd_assoc_3 dnd syst 99.2 2E-11 4.3E-16 106.3 4.9 46 70-117 20-66 (504)
400 COG4170 SapD ABC-type antimicr 99.2 4.3E-11 9.3E-16 94.0 6.1 135 55-194 3-173 (330)
401 PRK00349 uvrA excinuclease ABC 99.2 1.1E-10 2.4E-15 109.8 9.9 43 54-102 613-655 (943)
402 PRK00635 excinuclease ABC subu 99.2 8.8E-11 1.9E-15 115.5 8.9 41 54-100 599-639 (1809)
403 TIGR00630 uvra excinuclease AB 99.1 2.1E-10 4.5E-15 107.8 8.4 41 54-100 611-651 (924)
404 KOG0065 Pleiotropic drug resis 99.1 2.1E-10 4.6E-15 108.8 8.2 124 69-193 128-274 (1391)
405 cd03287 ABC_MSH3_euk MutS3 hom 99.0 5E-10 1.1E-14 89.6 5.1 59 69-127 18-77 (222)
406 PRK06002 fliI flagellum-specif 98.9 2.5E-09 5.4E-14 93.1 7.6 62 53-115 137-198 (450)
407 cd03243 ABC_MutS_homologs The 98.9 4.2E-10 9E-15 88.7 1.8 56 72-127 19-75 (202)
408 cd01130 VirB11-like_ATPase Typ 98.9 7.6E-10 1.7E-14 86.1 2.9 45 73-117 16-60 (186)
409 cd03283 ABC_MutS-like MutS-lik 98.8 2.7E-09 5.9E-14 84.0 3.8 36 69-106 14-49 (199)
410 TIGR00767 rho transcription te 98.8 9.5E-09 2.1E-13 88.2 6.7 56 54-109 129-195 (415)
411 cd03281 ABC_MSH5_euk MutS5 hom 98.8 1.3E-08 2.7E-13 81.1 5.7 53 75-128 20-76 (213)
412 PF13555 AAA_29: P-loop contai 98.7 1.3E-08 2.9E-13 64.9 4.0 39 72-110 12-51 (62)
413 cd03282 ABC_MSH4_euk MutS4 hom 98.7 1.1E-08 2.5E-13 80.8 4.4 38 68-105 15-52 (204)
414 PRK07594 type III secretion sy 98.7 1.7E-08 3.6E-13 87.8 5.4 61 54-115 128-188 (433)
415 cd01136 ATPase_flagellum-secre 98.7 3.4E-08 7.3E-13 83.1 6.3 54 61-115 49-102 (326)
416 PRK06793 fliI flagellum-specif 98.7 8E-08 1.7E-12 83.6 8.0 59 55-114 130-188 (432)
417 cd03227 ABC_Class2 ABC-type Cl 98.7 9.1E-09 2E-13 78.3 1.8 43 72-114 11-53 (162)
418 PRK09862 putative ATP-dependen 98.7 2.7E-08 5.9E-13 88.2 4.9 58 58-116 187-244 (506)
419 cd03277 ABC_SMC5_euk Eukaryoti 98.6 1.9E-08 4.2E-13 80.0 3.1 35 72-107 14-48 (213)
420 PRK07196 fliI flagellum-specif 98.6 2.7E-08 5.8E-13 86.6 4.2 43 68-111 142-184 (434)
421 PRK07721 fliI flagellum-specif 98.6 4.2E-08 9.2E-13 85.7 5.3 46 69-115 146-191 (438)
422 cd01128 rho_factor Transcripti 98.6 3.5E-07 7.7E-12 74.4 10.2 35 77-111 11-45 (249)
423 TIGR01069 mutS2 MutS2 family p 98.6 9.2E-09 2E-13 95.6 1.0 73 55-128 295-370 (771)
424 cd03284 ABC_MutS1 MutS1 homolo 98.6 4.1E-08 8.9E-13 78.3 4.3 58 69-127 18-76 (216)
425 COG0178 UvrA Excinuclease ATPa 98.6 4.2E-07 9.2E-12 83.2 10.1 39 55-99 606-644 (935)
426 PRK08149 ATP synthase SpaL; Va 98.6 1.3E-07 2.7E-12 82.3 6.2 47 68-115 138-187 (428)
427 TIGR02858 spore_III_AA stage I 98.5 9.3E-08 2E-12 78.6 4.8 35 83-117 112-146 (270)
428 TIGR02546 III_secr_ATP type II 98.5 1E-07 2.2E-12 83.1 5.0 51 64-115 128-178 (422)
429 TIGR02788 VirB11 P-type DNA tr 98.5 6.6E-08 1.4E-12 81.1 3.5 43 75-117 137-179 (308)
430 PRK00300 gmk guanylate kinase; 98.5 8.6E-08 1.9E-12 75.3 3.9 28 80-107 3-30 (205)
431 PRK09099 type III secretion sy 98.5 1.6E-07 3.4E-12 82.0 5.7 49 67-116 149-197 (441)
432 cd03239 ABC_SMC_head The struc 98.5 1.6E-07 3.4E-12 72.7 5.0 24 83-106 23-46 (178)
433 PRK10078 ribose 1,5-bisphospho 98.5 9.8E-08 2.1E-12 74.2 3.9 27 82-108 2-28 (186)
434 PRK06315 type III secretion sy 98.5 2.6E-07 5.5E-12 80.7 6.7 108 69-177 152-294 (442)
435 PRK06995 flhF flagellar biosyn 98.5 6E-08 1.3E-12 85.5 2.7 52 71-128 245-296 (484)
436 TIGR03496 FliI_clade1 flagella 98.5 1.5E-07 3.3E-12 81.6 4.9 58 56-114 112-169 (411)
437 TIGR03498 FliI_clade3 flagella 98.5 1.6E-07 3.5E-12 81.5 5.1 56 59-115 118-173 (418)
438 PRK09825 idnK D-gluconate kina 98.5 1.1E-07 2.4E-12 73.5 3.6 28 81-108 2-29 (176)
439 PRK09270 nucleoside triphospha 98.5 9.9E-08 2.1E-12 76.6 3.2 34 80-113 31-64 (229)
440 cd03285 ABC_MSH2_euk MutS2 hom 98.5 2.2E-07 4.7E-12 74.4 5.1 36 68-103 16-51 (222)
441 TIGR03497 FliI_clade2 flagella 98.5 2.3E-07 5E-12 80.6 5.5 53 62-115 118-170 (413)
442 PRK14721 flhF flagellar biosyn 98.5 8.4E-08 1.8E-12 83.3 2.6 49 79-127 188-240 (420)
443 TIGR01026 fliI_yscN ATPase Fli 98.5 1.8E-07 3.8E-12 81.9 4.6 46 68-114 150-195 (440)
444 PRK05922 type III secretion sy 98.4 3.3E-07 7.2E-12 79.8 6.1 47 68-115 144-190 (434)
445 TIGR00235 udk uridine kinase. 98.4 1E-07 2.2E-12 75.3 2.6 29 80-108 4-32 (207)
446 cd02023 UMPK Uridine monophosp 98.4 5.6E-07 1.2E-11 70.4 5.7 88 84-188 1-92 (198)
447 PRK05688 fliI flagellum-specif 98.4 3.8E-07 8.2E-12 79.7 5.0 41 68-109 155-195 (451)
448 PRK00635 excinuclease ABC subu 98.4 3.5E-07 7.5E-12 90.7 5.1 57 56-117 936-992 (1809)
449 PRK08972 fliI flagellum-specif 98.4 4.3E-07 9.4E-12 79.0 4.9 40 69-109 150-189 (444)
450 TIGR00554 panK_bact pantothena 98.4 2.5E-07 5.4E-12 76.8 3.3 33 82-114 62-96 (290)
451 PF13476 AAA_23: AAA domain; P 98.3 4.7E-07 1E-11 70.1 4.1 34 72-106 10-43 (202)
452 TIGR02322 phosphon_PhnN phosph 98.3 5.6E-07 1.2E-11 69.2 4.3 28 82-109 1-28 (179)
453 PRK08472 fliI flagellum-specif 98.3 5.7E-07 1.2E-11 78.4 4.7 54 61-115 137-190 (434)
454 PLN02796 D-glycerate 3-kinase 98.3 1.7E-07 3.6E-12 79.3 1.2 40 70-109 80-127 (347)
455 PRK06936 type III secretion sy 98.3 1E-06 2.2E-11 76.8 5.4 42 68-110 149-190 (439)
456 PRK14723 flhF flagellar biosyn 98.3 3.9E-07 8.4E-12 84.0 2.8 41 71-111 174-214 (767)
457 PRK01889 GTPase RsgA; Reviewed 98.3 7.2E-07 1.6E-11 76.3 4.3 56 72-127 185-248 (356)
458 PRK15494 era GTPase Era; Provi 98.3 5.9E-07 1.3E-11 76.3 3.7 52 55-106 18-76 (339)
459 PRK07960 fliI flagellum-specif 98.3 7.2E-07 1.6E-11 77.9 4.2 45 71-116 165-212 (455)
460 PRK04863 mukB cell division pr 98.3 1.1E-06 2.4E-11 86.4 6.0 44 72-116 18-61 (1486)
461 cd02025 PanK Pantothenate kina 98.3 4.5E-07 9.7E-12 72.5 2.7 25 84-108 1-25 (220)
462 PRK13477 bifunctional pantoate 98.3 1.2E-06 2.7E-11 77.8 5.7 53 61-115 265-320 (512)
463 TIGR03263 guanyl_kin guanylate 98.3 7.7E-07 1.7E-11 68.4 3.8 26 82-107 1-26 (180)
464 PRK06820 type III secretion sy 98.3 1.4E-06 3E-11 76.1 5.4 50 61-111 143-192 (440)
465 PRK10416 signal recognition pa 98.2 6.9E-07 1.5E-11 75.2 3.2 36 80-115 112-147 (318)
466 cd02026 PRK Phosphoribulokinas 98.2 8.6E-07 1.9E-11 73.1 3.6 32 84-115 1-32 (273)
467 PF02463 SMC_N: RecF/RecN/SMC 98.2 8.5E-07 1.8E-11 70.4 3.5 29 73-102 16-44 (220)
468 cd03286 ABC_MSH6_euk MutS6 hom 98.2 1.7E-06 3.7E-11 69.1 4.9 38 68-105 16-53 (218)
469 cd04155 Arl3 Arl3 subfamily. 98.2 2.1E-06 4.5E-11 65.1 5.0 29 83-111 15-47 (173)
470 TIGR00606 rad50 rad50. This fa 98.2 2.4E-06 5.1E-11 84.1 6.6 35 82-116 28-67 (1311)
471 PRK00098 GTPase RsgA; Reviewed 98.2 1.6E-06 3.5E-11 72.4 4.6 35 81-115 163-197 (298)
472 cd00879 Sar1 Sar1 subfamily. 98.2 1.1E-06 2.3E-11 68.0 3.3 33 71-104 9-41 (190)
473 TIGR00368 Mg chelatase-related 98.2 9.7E-07 2.1E-11 78.5 3.2 51 67-117 196-246 (499)
474 PRK08533 flagellar accessory p 98.2 2.1E-06 4.6E-11 69.1 4.7 50 56-115 8-58 (230)
475 cd04104 p47_IIGP_like p47 (47- 98.2 1.8E-06 3.9E-11 67.7 4.0 33 84-116 3-35 (197)
476 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.5E-06 3.4E-11 72.1 3.8 41 74-115 154-194 (287)
477 PRK05480 uridine/cytidine kina 98.2 1.7E-06 3.8E-11 68.2 3.9 27 80-106 4-30 (209)
478 KOG0063 RNAse L inhibitor, ABC 98.1 1.1E-06 2.3E-11 75.7 2.3 109 79-193 97-227 (592)
479 PF03193 DUF258: Protein of un 98.1 3E-06 6.5E-11 64.4 4.2 35 81-115 34-68 (161)
480 smart00534 MUTSac ATPase domai 98.1 9.7E-07 2.1E-11 68.6 1.2 43 85-127 2-45 (185)
481 PRK06731 flhF flagellar biosyn 98.1 2.7E-06 5.7E-11 70.0 3.3 44 58-108 58-101 (270)
482 PRK08927 fliI flagellum-specif 98.1 5.3E-06 1.1E-10 72.5 5.1 37 74-110 150-186 (442)
483 TIGR03185 DNA_S_dndD DNA sulfu 98.1 7.4E-06 1.6E-10 75.3 6.1 43 55-102 5-48 (650)
484 PRK10246 exonuclease subunit S 98.1 6.8E-06 1.5E-10 79.2 6.0 46 55-105 5-53 (1047)
485 TIGR01360 aden_kin_iso1 adenyl 98.0 1.7E-06 3.8E-11 66.6 1.7 33 82-114 3-38 (188)
486 PRK14722 flhF flagellar biosyn 98.0 3E-06 6.5E-11 72.6 3.1 39 70-108 125-163 (374)
487 COG3950 Predicted ATP-binding 98.0 3.7E-06 8E-11 70.6 3.3 38 71-108 13-50 (440)
488 TIGR00750 lao LAO/AO transport 98.0 2.5E-06 5.5E-11 71.2 2.3 41 70-110 22-62 (300)
489 TIGR02524 dot_icm_DotB Dot/Icm 98.0 5.2E-06 1.1E-10 71.0 4.2 29 80-108 132-160 (358)
490 PRK00064 recF recombination pr 98.0 1.2E-05 2.6E-10 68.9 6.5 36 71-107 13-48 (361)
491 smart00382 AAA ATPases associa 98.0 1.1E-05 2.5E-10 57.7 5.4 35 81-115 1-36 (148)
492 cd01876 YihA_EngB The YihA (En 98.0 3.5E-06 7.5E-11 62.8 2.6 29 85-113 2-32 (170)
493 TIGR00101 ureG urease accessor 98.0 8.1E-06 1.8E-10 64.3 4.5 28 84-111 3-30 (199)
494 PRK03846 adenylylsulfate kinas 98.0 6.4E-06 1.4E-10 64.6 3.8 38 80-117 22-60 (198)
495 cd03241 ABC_RecN RecN ATPase i 98.0 8.4E-06 1.8E-10 67.3 4.6 34 71-105 11-44 (276)
496 PLN02318 phosphoribulokinase/u 98.0 8.3E-06 1.8E-10 73.4 4.4 34 83-117 66-99 (656)
497 cd00071 GMPK Guanosine monopho 98.0 7E-06 1.5E-10 60.8 3.3 26 84-109 1-26 (137)
498 cd04159 Arl10_like Arl10-like 98.0 5E-06 1.1E-10 61.3 2.5 21 85-105 2-22 (159)
499 cd01131 PilT Pilus retraction 97.9 8.9E-06 1.9E-10 63.9 4.0 32 84-115 3-35 (198)
500 PRK13851 type IV secretion sys 97.9 1E-05 2.2E-10 68.8 4.6 39 79-117 159-197 (344)
No 1
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-34 Score=229.69 Aligned_cols=136 Identities=25% Similarity=0.385 Sum_probs=114.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------eeEEEec
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFS 125 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------~~i~~~~ 125 (198)
++|+++|+++.|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. .+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999644 6999999999999999999999999999999999999999999997654 4799999
Q ss_pred cccCCCCCCCCcHHHHHHHh----------CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRC----------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
|.....+++..++.+.+... ....+.+.+.++|+.+|+. +..++++++||| ||+|||.||++--
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSG-----GQ~QRV~lARAL~ 155 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSG-----GQKQRVLLARALA 155 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCc-----HHHHHHHHHHHhc
Confidence 97644555666665554321 1123468899999999997 678999999999 9999999999864
Q ss_pred c
Q 029133 196 S 196 (198)
Q Consensus 196 ~ 196 (198)
+
T Consensus 156 ~ 156 (254)
T COG1121 156 Q 156 (254)
T ss_pred c
Confidence 4
No 2
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=249.51 Aligned_cols=188 Identities=42% Similarity=0.639 Sum_probs=157.5
Q ss_pred CHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccccccC-CCCCCCCCCCCCCCCCCCeEEEEeeEEEcCCCCcceeeee
Q 029133 1 MQSFIDKFRYNAKRASLVQSRIKALERMG---HVDEVVN-DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLN 76 (198)
Q Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~l~~is 76 (198)
+++||+++..++.+.++++++.++++++. ....+.. ..+..+.++.+....+++++.++|+++.|++.+.+++++|
T Consensus 263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s 342 (530)
T COG0488 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLS 342 (530)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCce
Confidence 46899999988888889999999999987 2333332 2334455655433356789999999999966578999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
|.|.+|+++|||||||+|||||||+|+|...|.+|+|.+....++||++|+... +....++++++....+...+..++.
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~-l~~~~t~~d~l~~~~~~~~e~~~r~ 421 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE-LDPDKTVLEELSEGFPDGDEQEVRA 421 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh-cCccCcHHHHHHhhCccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 3355578888877665555889999
Q ss_pred HHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 157 HLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 157 ~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|..|+|+.+...+++..||| |||.||.||...
T Consensus 422 ~L~~f~F~~~~~~~~v~~LSG-----GEk~Rl~La~ll 454 (530)
T COG0488 422 YLGRFGFTGEDQEKPVGVLSG-----GEKARLLLAKLL 454 (530)
T ss_pred HHHHcCCChHHHhCchhhcCH-----hHHHHHHHHHHh
Confidence 999999999989999999999 999999999764
No 3
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=248.46 Aligned_cols=187 Identities=36% Similarity=0.577 Sum_probs=140.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCCCCCeEEEEeeEEEcCCCCcceeeeeEEEeC
Q 029133 2 QSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDL 81 (198)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~l~~isl~i~~ 81 (198)
++||++++.++.+.++++++.++++++.............+.++.+.. .+.++|.+++|++.|+ ++.+|+|+||+|.+
T Consensus 260 ~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~y~-~~~il~~isl~i~~ 337 (638)
T PRK10636 260 QSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPES-LPNPLLKMEKVSAGYG-DRIILDSIKLNLVP 337 (638)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCcc-CCCceEEEEeeEEEeC-CeeeeccceEEECC
Confidence 356777666666677788888888887543322112233444444322 3467899999999995 56799999999999
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 161 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 161 (198)
|++++|+|||||||||||++|+|+++|++|+|.++....++|++|+....+....++...+...........++++|..|
T Consensus 338 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 417 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF 417 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999987777899999974222333334444433222233456788999999
Q ss_pred CCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 162 GVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 162 ~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+|..+..++++.+||| ||||||+||++.-
T Consensus 418 ~l~~~~~~~~~~~LSg-----GekqRl~La~~l~ 446 (638)
T PRK10636 418 GFQGDKVTEETRRFSG-----GEKARLVLALIVW 446 (638)
T ss_pred CCChhHhcCchhhCCH-----HHHHHHHHHHHHh
Confidence 9975567889999999 9999999998753
No 4
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.7e-32 Score=248.34 Aligned_cols=187 Identities=92% Similarity=1.443 Sum_probs=136.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCCCCCeEEEEeeEEEcCCCCcceeeeeEEEeCC
Q 029133 3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLD 82 (198)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~l~~isl~i~~G 82 (198)
+||+++++++++.+.++++.+.++++.....+..++...+.++.+...++.++|+++++++.|++...+|+|+||+|.+|
T Consensus 456 ~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~G 535 (718)
T PLN03073 456 AFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLD 535 (718)
T ss_pred HHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCC
Confidence 45666666666666666666666665443322222222333332211123468999999999954456999999999999
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 162 (198)
++++|+|||||||||||++|+|+++|++|+|.++....++|++|++...++...+....+........++.++++|..++
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g 615 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 615 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999888778999999864334444443333322233445678899999999
Q ss_pred CCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 163 VTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 163 l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+..+..++++.+||| ||||||+||++-
T Consensus 616 l~~~~~~~~~~~LSg-----GqkqRvaLAraL 642 (718)
T PLN03073 616 VTGNLALQPMYTLSG-----GQKSRVAFAKIT 642 (718)
T ss_pred CChHHhcCCccccCH-----HHHHHHHHHHHH
Confidence 975556789999999 999999999864
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.6e-32 Score=221.42 Aligned_cols=133 Identities=32% Similarity=0.520 Sum_probs=109.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+++++||++.|+ ++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.+++. ..++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999995 678999999999999999999999999999999999999999999999873 25999
Q ss_pred eccccCCCCCCCCcHHHHHHHh-----C---CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRC-----F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+||.+...+.++..++..+.+. . ...+++.+.++|+.+++. +..++++.+||| ||||||.||++-
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSG-----GerQrv~iArAL 153 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSG-----GERQRVLIARAL 153 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccCh-----hHHHHHHHHHHH
Confidence 9998654444444333322211 1 122345688899999997 678999999999 999999999874
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1e-32 Score=214.73 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=108.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++||+++| +...+|++||++|.+||+++|+||||||||||||||.++..|++|+|.+++. ..+
T Consensus 1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 378999999999 4678999999999999999999999999999999999999999999999872 258
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+|+|++..+. -.++++++... ..+ ..++.+.++|+++||. +..+.++.+||| ||||||+|||+.
T Consensus 80 GmVFQ~fnLFP--HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSG-----GQqQRVAIARAL 151 (240)
T COG1126 80 GMVFQQFNLFP--HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSG-----GQQQRVAIARAL 151 (240)
T ss_pred Ceecccccccc--cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCc-----HHHHHHHHHHHH
Confidence 99999865433 33444444321 112 2356678899999997 577899999999 999999999974
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.4e-32 Score=214.54 Aligned_cols=133 Identities=23% Similarity=0.344 Sum_probs=108.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEeccc
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQH 127 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q~ 127 (198)
..+.++++++.|+ ...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.+++. ..++||+|+
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 3689999999995 478999999999999999999999999999999999999999999998764 369999998
Q ss_pred cCCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 128 HVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+.. + ...++.+++.... .....+.+.++|+.+||. ...++++.+||| ||||||+||++.-
T Consensus 81 ~~L-l-PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSG-----GMrQRVaiARAL~ 146 (248)
T COG1116 81 DAL-L-PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSG-----GMRQRVAIARALA 146 (248)
T ss_pred Ccc-c-chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccCh-----HHHHHHHHHHHHh
Confidence 642 2 2334444432111 112345789999999997 467899999999 9999999999753
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.5e-31 Score=222.15 Aligned_cols=133 Identities=21% Similarity=0.292 Sum_probs=110.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 123 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~ 123 (198)
.+.+++++|++.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.+++. ..|++
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 35799999999995 678999999999999999999999999999999999999999999998874 36999
Q ss_pred eccccCCCCCCCCcHHHHHHHhC---C--C--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCF---P--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~---~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+|++..+..++ +.+++.... . . ...+++.++|+.+++. ...++++.+||| ||+|||+||++.
T Consensus 82 VFQ~YALFPHlt--V~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSG-----GQqQRVALARAL 151 (352)
T COG3842 82 VFQSYALFPHMT--VEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSG-----GQQQRVALARAL 151 (352)
T ss_pred eecCcccCCCCc--HHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhCh-----HHHHHHHHHHHh
Confidence 999975444443 333332111 1 1 1246899999999997 477899999999 999999999974
No 9
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.9e-31 Score=207.42 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=114.6
Q ss_pred CeEEEEeeEEEcCCCC---cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 54 PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
++++++|+++.|+.+. .+|++|||+|.+||.++|+|++|||||||.++|+|+.+|++|+|.+++.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4789999999996543 4999999999999999999999999999999999999999999999873
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHhC----CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..|.+++||+...++...++-..+.... ....++++.++|+.+|+.....++.+.+||| ||+||||||++-
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSG-----GQ~QRiaIARAL 156 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSG-----GQRQRIAIARAL 156 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcCh-----hHHHHHHHHHHh
Confidence 2488999998766666655544332211 1233566999999999999889999999999 999999999985
Q ss_pred c
Q 029133 195 D 195 (198)
Q Consensus 195 ~ 195 (198)
.
T Consensus 157 ~ 157 (252)
T COG1124 157 I 157 (252)
T ss_pred c
Confidence 4
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.8e-31 Score=218.97 Aligned_cols=131 Identities=21% Similarity=0.322 Sum_probs=108.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
.|+++||++.|++.. +++++||+|+.||+++|+||||||||||||+|+|+..|++|+|.+++. ..|++|+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999995433 899999999999999999999999999999999999999999998874 3699999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCC----CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++..+..+ ++++++.. ... ...+.++.++.+.++++ ...++.+.+||| ||||||+||++-
T Consensus 82 Q~yALyPhm--tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSG-----GQrQRVAlaRAl 148 (338)
T COG3839 82 QNYALYPHM--TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSG-----GQRQRVALARAL 148 (338)
T ss_pred CCccccCCC--cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCCh-----hhHHHHHHHHHH
Confidence 997654444 44444332 111 23467899999999997 577899999999 999999999873
No 11
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=6.8e-30 Score=227.45 Aligned_cols=137 Identities=30% Similarity=0.476 Sum_probs=112.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAV 123 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~ 123 (198)
..|+++||+|.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 35999999999975567999999999999999999999999999999999999999999999873 26999
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.. +..+..+++....+..+++++.++++.+++.+... +..+++ .|.+||||||||++|||+-
T Consensus 413 V~Q~~~l---F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 413 FAQDAHL---FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARAL 485 (529)
T ss_pred EccCccc---ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHH
Confidence 9999753 34566777665445567888999999999864322 223332 5678999999999999874
No 12
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=5.8e-31 Score=201.08 Aligned_cols=132 Identities=27% Similarity=0.377 Sum_probs=108.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~ 120 (198)
+|++++|++.|++++++|+||||+|++||++-|+||||||||||||+|++..+|+.|+|.+++. ..
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999987877999999999999999999999999999999999999999999998752 36
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh------CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
||+|+|++-.. ...+++++.... .+.....++.++|+.+||. +..+..+.+||| ||+|||+||++-
T Consensus 81 IGvVFQD~rLL--~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSG-----GEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLL--PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSG-----GEQQRVAIARAI 152 (223)
T ss_pred eeeEeeecccc--ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCc-----hHHHHHHHHHHH
Confidence 99999996432 234455543321 1123367888999999997 456777899999 999999999874
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.8e-30 Score=205.81 Aligned_cols=133 Identities=28% Similarity=0.339 Sum_probs=104.9
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
++++++|++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.+++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 36789999998533 36899999999999999999999999999999999999999999988762
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHH----HhC-CC-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMM----RCF-PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~----~~~-~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
..|||++|++....++ ++.+++. ... .. .....+.+++..+|+.+...++++.+||| ||||||+|
T Consensus 81 R~~~iGfvFQ~~nLl~~l--tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSG-----GqqQRVAI 153 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDL--TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSG-----GQQQRVAI 153 (226)
T ss_pred HHHhEEEECccCCCCCCC--CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCH-----HHHHHHHH
Confidence 2599999986543333 3333322 111 11 23567788999999975555588999999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
||+-
T Consensus 154 ARAL 157 (226)
T COG1136 154 ARAL 157 (226)
T ss_pred HHHH
Confidence 9974
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=205.64 Aligned_cols=133 Identities=27% Similarity=0.399 Sum_probs=110.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------e
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 119 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~ 119 (198)
.+|+++||++.|++++.+|++|||+|++||+++||||||||||||||+|.|+.+|++|+|.+++. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 47999999999987889999999999999999999999999999999999999999999998762 3
Q ss_pred eEEEeccccCCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
.+||++|++.. -.+.+++.+.. ...+..+...+.++|+++|+. +...++..+||| ||+
T Consensus 82 ~iGmIfQ~~nL--v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSG-----GQQ 153 (258)
T COG3638 82 DIGMIFQQFNL--VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSG-----GQQ 153 (258)
T ss_pred hceeEeccCCc--ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCc-----chh
Confidence 69999998643 23333433322 122234566788999999997 567889999999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 154 QRVaIARaL 162 (258)
T COG3638 154 QRVAIARAL 162 (258)
T ss_pred HHHHHHHHH
Confidence 999999874
No 15
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.4e-29 Score=229.74 Aligned_cols=137 Identities=27% Similarity=0.427 Sum_probs=110.8
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (198)
+.++|.++||++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....|+|++|+.. .
T Consensus 316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~ 393 (635)
T PRK11147 316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA-E 393 (635)
T ss_pred CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccc-c
Confidence 467899999999995 56799999999999999999999999999999999999999999999866668999999752 2
Q ss_pred CCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 132 LDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+....++..++..... ......++++|..|++..+..++++.+||| ||||||+||++.-
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----GekqRl~la~al~ 456 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSG-----GERNRLLLARLFL 456 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCH-----HHHHHHHHHHHHh
Confidence 3334455554432211 111456789999999975567889999999 9999999998753
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=1.6e-30 Score=206.73 Aligned_cols=133 Identities=22% Similarity=0.264 Sum_probs=109.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+|+++||++.|+ .+.+++|+||+|++||+++++|||||||||+||+|.+++.|++|+|.+++. .+|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 589999999995 678999999999999999999999999999999999999999999998763 36999
Q ss_pred eccccCCCCCCCCcHHHHHH------HhCCCCcHHHHHHHHHhcCCCc-ccccCccccccCCCCCChHHHHHhhccccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMM------RCFPGVPEQKLRAHLGSFGVTG-NLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+-|.......++ +..++. .+.....++++.++|+.++|++ +..++++.+||| ||+|||.+|++..
T Consensus 80 viQqigLFPh~T--v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSG-----GQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLT--VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSG-----GQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCcc--HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCc-----chhhHHHHHHHHh
Confidence 999864433333 222222 1211223577889999999986 578999999999 9999999998754
No 17
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=205.26 Aligned_cols=133 Identities=24% Similarity=0.302 Sum_probs=108.6
Q ss_pred eEEEEeeEEEcCC----CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPG----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
+|++++|++.|.. ...+++||||+|++||++||||.||||||||+|||.++..|++|+|.+++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999964 146899999999999999999999999999999999999999999998872
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
.+||+++|++... .+.+++.++.. ...+. .++++.++|+.+||+ +..++++.+||| ||||||+|
T Consensus 81 ~R~~IGMIFQhFnLL--ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSG-----GQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLL--SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSG-----GQKQRVAI 152 (339)
T ss_pred HHhhccEEecccccc--ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCc-----chhhHHHH
Confidence 3699999996432 22344444321 11122 357888999999998 677899999999 99999999
Q ss_pred ccccc
Q 029133 191 VPRRD 195 (198)
Q Consensus 191 a~~~~ 195 (198)
||+..
T Consensus 153 ARALa 157 (339)
T COG1135 153 ARALA 157 (339)
T ss_pred HHHHh
Confidence 99854
No 18
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=1.2e-28 Score=223.87 Aligned_cols=138 Identities=23% Similarity=0.329 Sum_probs=114.2
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++|++|+|+.+ +++|+|+||+|++||++||||+||||||||+|+|+|++.|++|+|.+++. ..|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 469999999999755 46999999999999999999999999999999999999999999999873 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCc-----cccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|+... +..+..+++....+..+.+++.+++...++.+.....| .-.--|.+||||||||++|||+-
T Consensus 550 g~V~Q~~~L---f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 550 GYVLQDPFL---FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred eEEcccchh---hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh
Confidence 999999642 35677778777777777788889999888865443222 22344678999999999999974
No 19
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-28 Score=217.21 Aligned_cols=137 Identities=30% Similarity=0.456 Sum_probs=110.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.++|+++|+++.|+ ++.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++...+
T Consensus 317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 46899999999995 46799999999999999999999999999999999999999999999988888999999853222
Q ss_pred CCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 133 DLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
....++..++.... ....++.+.++|+.+++.....++++.+||| ||||||+||++.-
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gq~qrv~la~al~ 454 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSG-----GEKGRMLFGKLMM 454 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCH-----HHHHHHHHHHHHh
Confidence 22234444332211 2234567889999999954456889999999 9999999998753
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.8e-29 Score=207.55 Aligned_cols=135 Identities=27% Similarity=0.416 Sum_probs=109.8
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAV 123 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~ 123 (198)
..+.+++|++.|+..+.+|+||||+|++|+++||+||||||||||||+|+|+..|++|+|.+.+. ..+||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 35788999999942578999999999999999999999999999999999999999999998762 25999
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.....++...+..+.....+ ..++++.++|+.++|.. ..++++.+||+ ||||||.||.+-
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~-----G~kqrl~ia~aL 151 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSG-----GMKQRLSIALAL 151 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCH-----HHHHHHHHHHHH
Confidence 9999765445554444333322222 23578999999999986 44788999999 999999999764
No 21
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=6.1e-28 Score=217.39 Aligned_cols=135 Identities=24% Similarity=0.296 Sum_probs=109.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
.|+++||++.|.+++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++. ..|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 5999999976645567999999999999999999999999999999999999 99999998873 25999
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.. +..+..+++....+..+++++.++++.+++.+... +..+ .-.|.+||||||||++|||+-
T Consensus 428 v~Q~~~L---F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v-ge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 428 VGQNPQL---PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI-GDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred ecCCCcC---CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc-ccCCCCCCHHHHHHHHHHHHH
Confidence 9999742 34567777665545677899999999998864321 2222 234678999999999999863
No 22
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=1.9e-28 Score=194.90 Aligned_cols=133 Identities=30% Similarity=0.380 Sum_probs=103.7
Q ss_pred eEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------e
Q 029133 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 119 (198)
Q Consensus 55 ~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~ 119 (198)
+|+++|+++.|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999543 46999999999999999999999999999999999999999999988652 1
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.++|++|++..... .++.+++.. ...+ ...+++.++++.+++. +..++++.+||| ||+|||+||++
T Consensus 81 ~i~~~~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~lara 152 (216)
T TIGR00960 81 HIGMVFQDHRLLSD--RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSG-----GEQQRVAIARA 152 (216)
T ss_pred hceEEecCcccccc--ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHHHHH
Confidence 48999998642222 233333221 1111 1245688999999996 456788899999 99999999987
Q ss_pred cc
Q 029133 194 RD 195 (198)
Q Consensus 194 ~~ 195 (198)
--
T Consensus 153 l~ 154 (216)
T TIGR00960 153 IV 154 (216)
T ss_pred Hh
Confidence 43
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=2.5e-28 Score=203.95 Aligned_cols=135 Identities=22% Similarity=0.342 Sum_probs=106.1
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 122 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~ 122 (198)
.++|++++|++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+|
T Consensus 5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 35899999999995 567999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.....++......+.....+. ...++.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~aL 153 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSG-----GMKRRLTLARAL 153 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCH-----HHHHHHHHHHHH
Confidence 999986433333332222221111122 135677899999996 456888999999 999999999874
No 24
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=2.3e-28 Score=198.92 Aligned_cols=133 Identities=23% Similarity=0.406 Sum_probs=108.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
++|.+++|++.|+ +..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++.....
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 4799999999995 467999999999999999999999999999999999999999999999877789999998643222
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+..+...++. .......+++.++++.+++. +..++++..||| ||+|||+||++.
T Consensus 82 l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----Gq~qrv~laral 135 (251)
T PRK09544 82 LPLTVNRFLR-LRPGTKKEDILPALKRVQAG-HLIDAPMQKLSG-----GETQRVLLARAL 135 (251)
T ss_pred cChhHHHHHh-ccccccHHHHHHHHHHcCCh-HHHhCChhhCCH-----HHHHHHHHHHHH
Confidence 2233333322 12233456788999999996 456788999999 999999999864
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.1e-28 Score=208.09 Aligned_cols=132 Identities=22% Similarity=0.279 Sum_probs=106.4
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++++++.|+++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..|+|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5899999999943467999999999999999999999999999999999999999999998763 2599999
Q ss_pred cccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++..... .++.+++... ..+. ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 83 Q~~~lfp~--~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSg-----Gq~QRvalARAL 149 (356)
T PRK11650 83 QNYALYPH--MSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSG-----GQRQRVAMGRAI 149 (356)
T ss_pred CCccccCC--CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCH-----HHHHHHHHHHHH
Confidence 98643322 3444433211 1111 235678999999997 567899999999 999999999874
No 26
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=1e-27 Score=219.44 Aligned_cols=136 Identities=24% Similarity=0.377 Sum_probs=110.4
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|++ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 36999999999953 467999999999999999999999999999999999999999999998873 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc------CccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~------~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +..+..+++....+ .+++++.++++.+++.+.... ..++ -.|.+||||||||++|||+-
T Consensus 530 ~~v~Q~~~l---f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig-e~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 530 GVVLQNGRL---MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVIS-EGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred EEEccCCcc---CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHH
Confidence 999999742 34567777665444 678889999999999643321 2222 24677888999999999863
No 27
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.2e-29 Score=202.18 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=108.4
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~ 122 (198)
+|.++++++.|+ ...+++|||++|+.||.+||+||||||||||||+|+|++.|++|.|.+++. .+||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 588999999994 567899999999999999999999999999999999999999999998764 3699
Q ss_pred EeccccCCCCCCCCcHHHHHHHhC------C--CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCF------P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.....+ ++.+++.... + .....++.++|..+.|. ...++++.+||| ||||||+||++.
T Consensus 81 fvFQ~YALF~Hm--tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSG-----GQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHM--TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSG-----GQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccc--hHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcCh-----HHHHHHHHHHHh
Confidence 999997543333 3344332211 1 23467888999999997 578899999999 999999999975
No 28
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=1.8e-28 Score=193.56 Aligned_cols=130 Identities=23% Similarity=0.333 Sum_probs=102.2
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--------eEEEeccccC
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHHV 129 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~--------~i~~~~q~~~ 129 (198)
++|+++.|++...+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|++.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 57999999532679999999999999999999999999999999999999999999987632 5899999852
Q ss_pred CCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 130 DGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..+ ...+..+++... .......++.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 82 ~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 141 (205)
T cd03226 82 YQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSG-----GQKQRLAIAAAL 141 (205)
T ss_pred hhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCH-----HHHHHHHHHHHH
Confidence 111 122444443221 1122346788999999997 456888999999 999999999864
No 29
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=4.8e-28 Score=197.65 Aligned_cols=133 Identities=22% Similarity=0.231 Sum_probs=106.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEecc
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ 126 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q 126 (198)
.+.|+++|+++.|+ +..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 46799999999995 467999999999999999999999999999999999999999999988653 24899999
Q ss_pred ccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++... ...++.+++..........++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 89 ~~~l~--~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----Gqkqrl~laraL 148 (257)
T PRK11247 89 DARLL--PWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSG-----GQKQRVALARAL 148 (257)
T ss_pred CccCC--CCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 86322 2234544443221122356788999999996 456788899999 999999999864
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.4e-28 Score=192.96 Aligned_cols=134 Identities=24% Similarity=0.372 Sum_probs=108.7
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------- 118 (198)
.+.|++++|+++| +++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|.+.+.
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5789999999999 5678999999999999999999999999999999999999999999998752
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHH---HhCCCCcHHHH----HHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVPEQKL----RAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
.++|+++|+-...-+ .+++++.. +.+...++..+ ..-|+.+||.+...++.+.+||| |+++|++||
T Consensus 85 ~r~GvlFQ~gALFss--ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSG-----GM~KRvaLA 157 (263)
T COG1127 85 KRMGVLFQQGALFSS--LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSG-----GMRKRVALA 157 (263)
T ss_pred hheeEEeeccccccc--cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcc-----hHHHHHHHH
Confidence 359999998533222 33333322 23344454444 45589999988767899999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
|+-
T Consensus 158 RAi 160 (263)
T COG1127 158 RAI 160 (263)
T ss_pred HHH
Confidence 975
No 31
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=1.2e-27 Score=219.71 Aligned_cols=137 Identities=25% Similarity=0.356 Sum_probs=110.6
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 46999999999974 367999999999999999999999999999999999999999999998762 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc------CccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~------~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +..+..+++....+..+++++.++++..++.+.... ..++ -.|.+||||||||++|||+-
T Consensus 556 ~~v~Q~~~l---f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~-e~G~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 556 AMVDQDIFL---FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA-EGGANLSGGQRQRLEIARAL 630 (710)
T ss_pred eEEecCChh---hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceec-cCCCCCCHHHHHHHHHHHHH
Confidence 999999642 245666776544445678889999999998643321 1222 24677888999999999863
No 32
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=3.4e-28 Score=193.59 Aligned_cols=132 Identities=27% Similarity=0.353 Sum_probs=102.2
Q ss_pred EEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------
Q 029133 56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (198)
Q Consensus 56 i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------- 118 (198)
|+++++++.|++. +.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999542 57999999999999999999999999999999999999999999987641
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..++|++|++...... ++.+++.. ...+. ..+.+.++++.+++. ...++++.+||| ||||||+||
T Consensus 81 ~~~i~~~~q~~~~~~~~--tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDL--TALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSG-----GQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCC--cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCH-----HHHHHHHHH
Confidence 2489999986432222 33332221 11111 235678899999997 455788899999 999999999
Q ss_pred cccc
Q 029133 192 PRRD 195 (198)
Q Consensus 192 ~~~~ 195 (198)
++--
T Consensus 153 ~al~ 156 (218)
T cd03255 153 RALA 156 (218)
T ss_pred HHHc
Confidence 8753
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=5e-28 Score=204.62 Aligned_cols=135 Identities=24% Similarity=0.339 Sum_probs=105.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 122 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~ 122 (198)
.++|+++||++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..+|
T Consensus 39 ~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 45799999999995 567999999999999999999999999999999999999999999998753 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|+......++......+.....+. ..+.+.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~-----G~kqrv~lA~aL 187 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSG-----GMKRRLTLARAL 187 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCH-----HHHHHHHHHHHH
Confidence 999986433333332222221111122 234567889999997 456889999999 999999999864
No 34
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-28 Score=194.27 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=102.4
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~ 125 (198)
|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 47899999995 467999999999999999999999999999999999999999999988652 2489999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.... ..++.+++.. ...+. ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 80 q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qr~~la~al 146 (220)
T cd03265 80 QDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSG-----GMRRRLEIARSL 146 (220)
T ss_pred CCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCH-----HHHHHHHHHHHH
Confidence 9864222 2233333211 11111 245678999999996 456788999999 999999999864
No 35
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.1e-28 Score=205.30 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=107.5
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 123 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~ 123 (198)
.++|+++++++.|+ +..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 567899999999999999999999999999999999999999999998763 35999
Q ss_pred eccccCCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.....+ ++.+++... ..+ ...+++.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 83 vfQ~~~lfp~~--tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSg-----Gq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHM--SLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISG-----GQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCC--CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99986433233 334433211 111 1246788999999997 467889999999 999999999875
No 36
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=3.4e-28 Score=192.39 Aligned_cols=130 Identities=19% Similarity=0.275 Sum_probs=103.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|+++++++.|+ +.++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 46899999995 567999999999999999999999999999999999999999999998763 24899999
Q ss_pred ccCCCCCCCCcHHHHHH--HhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMM--RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++... ...+..+++. ........+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 80 ~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al 141 (208)
T cd03268 80 APGFY--PNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSL-----GMKQRLGIALAL 141 (208)
T ss_pred CCccC--ccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCH-----HHHHHHHHHHHH
Confidence 85322 2233333322 111223466788999999996 456788899999 999999999864
No 37
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=4.7e-28 Score=204.76 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=105.2
Q ss_pred eEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
+|+++||++.|++ ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4889999999952 246999999999999999999999999999999999999999999988652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..|+|++|++... ...++.+++.. ...+. ..+++.++|+.+++. +..++++.+||| ||||||+||
T Consensus 81 r~~Ig~v~Q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSg-----GqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLL--SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSG-----GQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCH-----HHHHHHHHH
Confidence 2599999986432 22344443321 11111 245678999999997 567889999999 999999999
Q ss_pred cccc
Q 029133 192 PRRD 195 (198)
Q Consensus 192 ~~~~ 195 (198)
++--
T Consensus 153 RAL~ 156 (343)
T TIGR02314 153 RALA 156 (343)
T ss_pred HHHH
Confidence 8753
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.9e-28 Score=194.43 Aligned_cols=130 Identities=23% Similarity=0.304 Sum_probs=101.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|+++++++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999995 467999999999999999999999999999999999999999999988653 24899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++.... ..+..+++.. .... ...+.+.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 80 ~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrl~la~al 145 (213)
T cd03259 80 DYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSG-----GQQQRVALARAL 145 (213)
T ss_pred chhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCH-----HHHHHHHHHHHH
Confidence 864222 2233333221 1111 1235678899999997 456788899999 999999999874
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=4.5e-28 Score=202.15 Aligned_cols=133 Identities=23% Similarity=0.315 Sum_probs=104.5
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 122 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~ 122 (198)
+.+|+++||++.|+ +..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 35799999999995 567999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++..... .++.+++. ....+.. .+.+.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 81 ~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSg-----G~~qrv~la~al 150 (303)
T TIGR01288 81 VVPQFDNLDPE--FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSG-----GMKRRLTLARAL 150 (303)
T ss_pred EEeccccCCcC--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCH-----HHHHHHHHHHHH
Confidence 99998643222 33333322 1111122 24567889999996 456788999999 999999999864
No 40
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=1.4e-27 Score=219.24 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=110.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++||+|.|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 36999999999965567999999999999999999999999999999999999999999999873 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. +..+..+++... .+..+++++.++++.+++.+... +..+. -.|.+||||||||++|||+-
T Consensus 552 ~v~Q~~~l---f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~-e~G~~LSgGQrQRialARal 626 (708)
T TIGR01193 552 YLPQEPYI---FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS-EEGSSISGGQKQRIALARAL 626 (708)
T ss_pred EEecCcee---hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec-CCCCCCCHHHHHHHHHHHHH
Confidence 99999742 345667776644 24567788999999998864322 22222 24677888999999999874
No 41
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=1.6e-28 Score=194.85 Aligned_cols=130 Identities=28% Similarity=0.406 Sum_probs=102.4
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEeccccCCC
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVDG 131 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q~~~~~ 131 (198)
++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++...
T Consensus 2 ~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 678999995 457999999999999999999999999999999999999999999998763 3599999986422
Q ss_pred CCCCCcHHHHHHHhCC----------CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 132 LDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.....++.+++..... ....+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la~al 147 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSG-----GQQQRVLLARAL 147 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCH-----HHHHHHHHHHHH
Confidence 1122344444332110 11245678899999996 456788899999 999999999864
No 42
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.3e-28 Score=193.38 Aligned_cols=133 Identities=24% Similarity=0.311 Sum_probs=103.9
Q ss_pred CeEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
++|++++|++.|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 579999999999532 46999999999999999999999999999999999999999999998752
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++|++|++..... .+..+++.. .... ...+++.++++.+++. +..++++.+||| ||||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----G~~qrl~ 155 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPD--FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSG-----GERQRVA 155 (233)
T ss_pred HHhccEEEEecCcccCCC--CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCH-----HHHHHHH
Confidence 248999998542222 233333221 1111 1235678999999996 455778889999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++-
T Consensus 156 la~al 160 (233)
T PRK11629 156 IARAL 160 (233)
T ss_pred HHHHH
Confidence 99864
No 43
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=6.7e-28 Score=204.78 Aligned_cols=132 Identities=19% Similarity=0.292 Sum_probs=106.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEe
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF 124 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~ 124 (198)
.+|+++|+++.|+ ...+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4689999999995 567899999999999999999999999999999999999999999998763 249999
Q ss_pred ccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++.....+ ++.+++.. ...+ ....++.++++.++|. ...++++.+||| ||||||+||++-
T Consensus 82 ~Q~~~lfp~~--tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSg-----Gq~QRvaLARaL 149 (353)
T TIGR03265 82 FQSYALFPNL--TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSG-----GQQQRVALARAL 149 (353)
T ss_pred eCCcccCCCC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCH-----HHHHHHHHHHHH
Confidence 9996433223 33333321 1111 1246788999999997 467889999999 999999999874
No 44
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.95 E-value=5.1e-28 Score=192.04 Aligned_cols=132 Identities=28% Similarity=0.370 Sum_probs=102.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~ 120 (198)
+|+++|+++.|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 4789999999943457999999999999999999999999999999999999999999987652 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++.... ..+..+++.. ...+ ..++.+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 81 i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~al 152 (214)
T TIGR02673 81 IGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSG-----GEQQRVAIARAI 152 (214)
T ss_pred eEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 899999864222 2233333221 1111 1245678999999997 456788899999 999999999864
No 45
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.5e-28 Score=194.60 Aligned_cols=130 Identities=23% Similarity=0.323 Sum_probs=101.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------eeE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 121 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~i 121 (198)
|+++|+++.|+ ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 46899999995 467999999999999999999999999999999999999999999987652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.... ..++.+++.. ...... .+.+.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 80 ~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSG-----GMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99999864222 2343333321 111111 34577899999996 455788999999 999999999874
No 46
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=2.8e-27 Score=213.27 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=110.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++++++.|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 45999999999975567999999999999999999999999999999999999999999998873 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. ++.+..+++.... ..+++++.++++.+++.+... +..+++ .|.+||||||||++|||+-
T Consensus 419 ~v~Q~~~l---F~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 419 MVQQDPVV---LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVL 491 (592)
T ss_pred EEccCCcc---ccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHH
Confidence 99999752 3346666665443 457788999999999863221 233333 5778999999999999863
No 47
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=7.9e-28 Score=205.60 Aligned_cols=134 Identities=21% Similarity=0.305 Sum_probs=107.6
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEE
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA 122 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~ 122 (198)
..++|+++|+++.|+ ...+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 356799999999995 467899999999999999999999999999999999999999999998763 2499
Q ss_pred EeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.....+ ++.+++... ..+. ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 90 ~vfQ~~~lfp~l--tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSg-----Gq~QRVaLARaL 159 (375)
T PRK09452 90 TVFQSYALFPHM--TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSG-----GQQQRVAIARAV 159 (375)
T ss_pred EEecCcccCCCC--CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 999996433233 344443211 1111 135678899999997 567889999999 999999999864
No 48
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-27 Score=206.96 Aligned_cols=138 Identities=28% Similarity=0.389 Sum_probs=112.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
.+.++++++.|++++++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 4556699999987768999999999999999999999999999999999999999999999863 24999
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----ccccccCCCCCChHHHHHhhcccccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----PMYTLSGFGCSGGTNSRPCFVPRRDS 196 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSG~~ls~Ge~~rv~la~~~~~ 196 (198)
++|++.. +..+..+++....+..+++++.++++..++.+ ..+. .+-.-+|.+|||||+|||+|||+--+
T Consensus 400 v~Q~p~l---f~gTireNi~l~~~~~s~e~i~~al~~a~l~~-~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 400 VSQNPYL---FAGTIRENILLARPDASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eCCCCcc---ccccHHHHhhccCCcCCHHHHHHHHHHhcHHH-hhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 9999742 34566666665666678899999999999974 3333 12233467799999999999998543
No 49
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3.5e-27 Score=211.30 Aligned_cols=135 Identities=28% Similarity=0.417 Sum_probs=107.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.++|.++++++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....++|++|+.. .+
T Consensus 322 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~ 399 (556)
T PRK11819 322 DKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-AL 399 (556)
T ss_pred CeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-hc
Confidence 56899999999995 46799999999999999999999999999999999999999999999876668999999852 22
Q ss_pred CCCCcHHHHHHHhC--C--CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRCF--P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~~--~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
....++..++.... . ......++++|+.+++.....++++.+||| ||||||+||++.
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----G~~qrv~la~al 460 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSG-----GERNRLHLAKTL 460 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCH-----HHHHHHHHHHHH
Confidence 22334444432211 1 112345678999999964456889999999 999999999875
No 50
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.3e-28 Score=194.06 Aligned_cols=131 Identities=24% Similarity=0.276 Sum_probs=102.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++++++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 488999999995 467999999999999999999999999999999999999999999988752 2489999
Q ss_pred cccCCCCCCCCcHHHHHHH--hC-C-----CC--cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CF-P-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~-~-----~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.... ..++.+++.. .. . .. ..+.+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 81 q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~al 151 (239)
T cd03296 81 QHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSG-----GQRQRVALARAL 151 (239)
T ss_pred cCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCH-----HHHHHHHHHHHH
Confidence 9864322 2233333221 11 1 11 134577899999996 456788899999 999999999874
No 51
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.5e-28 Score=193.03 Aligned_cols=134 Identities=30% Similarity=0.478 Sum_probs=109.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
+++.++++++.|+++..+|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999975568999999999999999999999999999999999999999999987652 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
||++|++...+ +..++.+.+... ..+. .+.++.++|..+++. +..++++.+||| ||||||+||...
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSG-----GqkqRvaIA~vL 153 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSG-----GQKQRVAIAGVL 153 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCC-----cceeeHHhhHHH
Confidence 99999985433 334544443321 1122 246788999999997 457899999999 999999999753
No 52
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=9.3e-28 Score=189.53 Aligned_cols=131 Identities=21% Similarity=0.360 Sum_probs=103.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce----------eEEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF 124 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~----------~i~~~ 124 (198)
+|+++++++.|+ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 478999999995 4679999999999999999999999999999999999999999999887531 48899
Q ss_pred ccccCCCCCCCCcHHHHHHH--hCCC-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMR--CFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+... ....++.+++.. .... ...+++.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 80 ~~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrl~la~al 144 (204)
T PRK13538 80 GHQPGI--KTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSA-----GQQRRVALARLW 144 (204)
T ss_pred CCcccc--CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCH-----HHHHHHHHHHHH
Confidence 887532 222344433321 1111 3456788999999996 456788899999 999999999864
No 53
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=1e-27 Score=191.44 Aligned_cols=133 Identities=27% Similarity=0.360 Sum_probs=103.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~ 120 (198)
+|+++|+++.|++.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4789999999943467999999999999999999999999999999999999999999987652 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++..... .+..+++.. ...+. ..+.+.++++.+++.. ..++++.+||| ||+|||+||++-
T Consensus 81 i~~~~q~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~-----G~~qrv~laral 152 (222)
T PRK10908 81 IGMIFQDHHLLMD--RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSG-----GEQQRVGIARAV 152 (222)
T ss_pred eEEEecCcccccc--ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCH-----HHHHHHHHHHHH
Confidence 8999998643222 333333321 11111 1345678999999974 56788899999 999999999875
Q ss_pred c
Q 029133 195 D 195 (198)
Q Consensus 195 ~ 195 (198)
-
T Consensus 153 ~ 153 (222)
T PRK10908 153 V 153 (222)
T ss_pred H
Confidence 3
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.1e-28 Score=190.17 Aligned_cols=130 Identities=18% Similarity=0.347 Sum_probs=102.1
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------eeEEEecccc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH 128 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------~~i~~~~q~~ 128 (198)
|+++++++.|+ ++.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 46899999995 467999999999999999999999999999999999999999999998763 3599999986
Q ss_pred CCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 129 VDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..... .+..+++. ....+ ...+.+.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 80 ~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~al 143 (210)
T cd03269 80 GLYPK--MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSK-----GNQQKVQFIAAV 143 (210)
T ss_pred cCCcC--CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCH-----HHHHHHHHHHHH
Confidence 42222 23333321 11111 1245678899999996 456788899999 999999999864
No 55
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.8e-28 Score=191.91 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=102.1
Q ss_pred EEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEecc
Q 029133 56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q 126 (198)
|+++|+++.|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999531 57999999999999999999999999999999999999999999998763 35899999
Q ss_pred ccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++.... ..+..+++. ....+ ...+.+.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 81 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrl~la~al 146 (220)
T cd03293 81 QDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSG-----GMRQRVALARAL 146 (220)
T ss_pred cccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCH-----HHHHHHHHHHHH
Confidence 864222 223333321 11111 1245678899999996 456788899999 999999999874
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=1.4e-27 Score=198.97 Aligned_cols=133 Identities=24% Similarity=0.325 Sum_probs=104.6
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~ 124 (198)
.+++++++++|+ ...+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 478999999995 567999999999999999999999999999999999999999999988663 249999
Q ss_pred ccccCCCCCCCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++......+......+.....+. ...++.++++.|++.. ..++++..||| ||||||+||++-
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~-----G~~qrv~la~al 148 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSK-----GYRQRVGLAQAL 148 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCH-----HHHHHHHHHHHH
Confidence 9986433333332222221211121 1456788999999974 56888999999 999999999864
No 57
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=1.1e-27 Score=188.25 Aligned_cols=130 Identities=24% Similarity=0.381 Sum_probs=102.1
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~ 125 (198)
|+++++++.|+ ...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 46899999995 567999999999999999999999999999999999999999999988763 2488999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+... ....++.+++.. ......+..+.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al 142 (198)
T TIGR01189 80 HLPGL--KPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSA-----GQQRRLALARLW 142 (198)
T ss_pred cCccc--ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCH-----HHHHHHHHHHHH
Confidence 87532 222344333221 11122245688999999997 455788899999 999999999874
No 58
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=8.1e-28 Score=191.40 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=103.1
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeE
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 121 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i 121 (198)
+|+++|+++.|++. .++|+++||+|.+|++++|+|+|||||||||++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 47899999999542 16999999999999999999999999999999999999999999988652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.... ..++.+++. ....+ ...+.+.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 81 ~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFST-----GMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCH-----HHHHHHHHHHHH
Confidence 99999863222 223333321 11111 1245678899999996 456788999999 999999999874
No 59
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=194.73 Aligned_cols=131 Identities=22% Similarity=0.286 Sum_probs=103.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEecccc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHH 128 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q~~ 128 (198)
+|+++|+++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 478999999995 467999999999999999999999999999999999999999999998653 2489999985
Q ss_pred CCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
... ...++..++.. ...+. ..+++.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 80 ~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----Gq~qrl~laral 143 (255)
T PRK11248 80 GLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSG-----GQRQRVGIARAL 143 (255)
T ss_pred ccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCH-----HHHHHHHHHHHH
Confidence 422 22233333221 11111 235678999999997 456788899999 999999999874
No 60
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.3e-27 Score=189.21 Aligned_cols=132 Identities=27% Similarity=0.366 Sum_probs=104.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--------eEEEecc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQ 126 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~--------~i~~~~q 126 (198)
+|+++|+++.|+ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 689999999995 4579999999999999999999999999999999999999999999987632 3789987
Q ss_pred ccCCCCCCCCcHHHHHH--HhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 127 HHVDGLDLSSNPLLYMM--RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+..... ..++.+++. ........+.+.++++.+++.. ..++++.+||| ||+||++||++.-
T Consensus 81 ~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~-----G~~qrl~la~al~ 143 (207)
T PRK13539 81 RNAMKP--ALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSA-----GQKRRVALARLLV 143 (207)
T ss_pred CCcCCC--CCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCH-----HHHHHHHHHHHHh
Confidence 643222 233333322 1111233556889999999974 56788899999 9999999998753
No 61
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=6.4e-27 Score=214.84 Aligned_cols=137 Identities=26% Similarity=0.377 Sum_probs=110.0
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
..|+++||++.|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 46999999999964 357999999999999999999999999999999999999999999998873 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+|++|++.. +..+..+++....+..+++++.++++.+++.+... +..++ -.|.+||||||||++|||+-
T Consensus 557 i~~v~Q~~~l---F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig-e~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 557 VALVGQEPVL---FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred ceEEecCccc---cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCccc-CCCCcCCHHHHHHHHHHHHH
Confidence 9999999752 34566677664444566788999999999864221 22222 24667888999999999874
No 62
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=1.7e-27 Score=189.90 Aligned_cols=132 Identities=22% Similarity=0.302 Sum_probs=102.5
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
+|+++++++.|++. .++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 37899999999532 46999999999999999999999999999999999999999999988642
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
..++|++|++.... ..++.+++.. .... ...+.+.++++.+++. ...++++.+||| ||+|||+|
T Consensus 81 ~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~l 152 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSG-----GERQRVAI 152 (221)
T ss_pred HHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHH
Confidence 24899999853222 2233333221 1111 1235678899999997 456788899999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 153 aral 156 (221)
T TIGR02211 153 ARAL 156 (221)
T ss_pred HHHH
Confidence 9864
No 63
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=1.4e-27 Score=189.37 Aligned_cols=130 Identities=20% Similarity=0.277 Sum_probs=101.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 46899999995 467999999999999999999999999999999999999999999988652 24899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++.... ..+..+++.. .... ...+++.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 80 ~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qr~~laral 145 (213)
T cd03301 80 NYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSG-----GQRQRVALGRAI 145 (213)
T ss_pred Chhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCH-----HHHHHHHHHHHH
Confidence 864222 2233333221 1111 1234677889999996 456888999999 999999999864
No 64
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=1.4e-27 Score=191.29 Aligned_cols=134 Identities=21% Similarity=0.216 Sum_probs=104.4
Q ss_pred CCeEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------
Q 029133 53 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------- 118 (198)
.++|+++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 3579999999999642 25899999999999999999999999999999999999999999987652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCC----CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
..++|++|++.... ..++.+++.. ... ....+++.++++.+++. ...++++..||| ||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----Ge~qrl 155 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSG-----GEQQRV 155 (228)
T ss_pred HHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCH-----HHHHHH
Confidence 25899999864222 2233333221 111 12245688999999996 456788899999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 156 ~la~al 161 (228)
T PRK10584 156 ALARAF 161 (228)
T ss_pred HHHHHH
Confidence 999864
No 65
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=5.5e-27 Score=210.92 Aligned_cols=137 Identities=21% Similarity=0.260 Sum_probs=108.9
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|++. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 359999999999643 67999999999999999999999999999999999999999999998763 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. + ..+..+++....+ ..+++++.++++.+++.+... +..++ -.|.+||||||||++|||+-
T Consensus 420 ~~v~Q~~~l-f--~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig-~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 420 ALVSQNVHL-F--NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG-ENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred eEEccCcee-e--cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC-CCCCcCCHHHHHHHHHHHHH
Confidence 999999642 2 3566666654322 357888999999998764221 22232 34677888999999999863
No 66
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=1.3e-27 Score=190.48 Aligned_cols=131 Identities=22% Similarity=0.313 Sum_probs=101.5
Q ss_pred EEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEe
Q 029133 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (198)
Q Consensus 56 i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~ 124 (198)
|+++++++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999532 67999999999999999999999999999999999999999999988653 248999
Q ss_pred ccccCCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++.... ..+..+++. ....+. ..+.+.++++.+++. +..++++.+||| ||+|||+||++-
T Consensus 81 ~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al 148 (220)
T cd03263 81 PQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSG-----GMKRKLSLAIAL 148 (220)
T ss_pred cCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCH-----HHHHHHHHHHHH
Confidence 99854222 223333322 111111 235678899999996 456788899999 999999999864
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-27 Score=202.01 Aligned_cols=132 Identities=22% Similarity=0.287 Sum_probs=103.8
Q ss_pred eEEEEeeEEEcC--C-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYP--G-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~--~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
+|+++||++.|+ + ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 478999999995 1 357999999999999999999999999999999999999999999988652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..++|++|++..... .++.+++.. ...+. ..+++.++++.+++. ...++++.+||| ||||||+||
T Consensus 81 ~~~ig~v~q~~~l~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSg-----Gq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSS--RTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSG-----GQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCC--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCH-----HHHHHHHHH
Confidence 249999998643222 233333221 11111 235678899999996 456788999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 153 raL 155 (343)
T PRK11153 153 RAL 155 (343)
T ss_pred HHH
Confidence 874
No 68
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.95 E-value=2.2e-27 Score=187.06 Aligned_cols=131 Identities=21% Similarity=0.341 Sum_probs=104.0
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~ 125 (198)
|+++++++.|+ +..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 46899999995 467999999999999999999999999999999999999999999987652 2489999
Q ss_pred cccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
|++.. ....++.+++........++.+.++++.+++.. ..++++.+||| ||+||++||++.-
T Consensus 80 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~-----G~~qrl~laral~ 141 (201)
T cd03231 80 HAPGI--KTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSA-----GQQRRVALARLLL 141 (201)
T ss_pred ccccc--CCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCH-----HHHHHHHHHHHHh
Confidence 87532 222344444332212224667889999999974 45788889999 9999999998753
No 69
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=203.39 Aligned_cols=131 Identities=23% Similarity=0.291 Sum_probs=104.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
.|+++|+++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 589999999995 467999999999999999999999999999999999999999999998653 2499999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++..... .++.+++.. ...+. ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 82 Q~~~l~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSg-----Gq~QRvaLAraL 148 (369)
T PRK11000 82 QSYALYPH--LSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSG-----GQRQRVAIGRTL 148 (369)
T ss_pred CCcccCCC--CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 98643222 233333321 11111 235688999999997 456888999999 999999999874
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=1.7e-27 Score=191.99 Aligned_cols=131 Identities=22% Similarity=0.360 Sum_probs=103.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~ 124 (198)
+|+++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999995 567999999999999999999999999999999999999999999988653 248999
Q ss_pred ccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++..... .+..+++.. ...+. ..+.+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 80 ~q~~~~~~~--~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrl~laral 147 (236)
T TIGR03864 80 FQQPTLDLD--LSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNG-----GHRRRVEIARAL 147 (236)
T ss_pred CCCCCCccc--CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 998543222 333333221 11111 235677899999997 456788899999 999999999864
No 71
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=1.1e-27 Score=206.19 Aligned_cols=132 Identities=27% Similarity=0.461 Sum_probs=106.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
++|+++||++.|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3789999999995 577999999999999999999999999999999999999999999998752 2499
Q ss_pred EeccccCCCCCCCCcHHHHHHHh-------C---CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRC-------F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
|++|+....+.+ +..+++... . ...+.+.+.++++.+++. +..++++.+||| ||||||+||+
T Consensus 81 ~v~q~~~l~~~~--tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSg-----GerQRv~IAr 152 (402)
T PRK09536 81 SVPQDTSLSFEF--DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSG-----GERQRVLLAR 152 (402)
T ss_pred EEccCCCCCCCC--CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHH
Confidence 999986443333 333332211 1 112346688999999996 567889999999 9999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+-
T Consensus 153 AL 154 (402)
T PRK09536 153 AL 154 (402)
T ss_pred HH
Confidence 74
No 72
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.95 E-value=6.4e-27 Score=214.40 Aligned_cols=137 Identities=25% Similarity=0.310 Sum_probs=110.5
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+|+|++ .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 46999999999964 357999999999999999999999999999999999999999999998863 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +..+..+++....+..+++++.++++.+++.+... +..++ -.|.+||||||||++|||+-
T Consensus 542 ~~v~Q~~~l---f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~-e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 542 GYVPQDPRL---FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIG-ERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred EEECCChhh---hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceec-CCCCCCCHHHHHHHHHHHHH
Confidence 999999742 24566777665444567888999999998864322 22222 24677888999999999864
No 73
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=8.4e-27 Score=208.70 Aligned_cols=136 Identities=29% Similarity=0.448 Sum_probs=108.1
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (198)
..++|+++|+++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....|+|++|++. .
T Consensus 319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~ 396 (552)
T TIGR03719 319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-A 396 (552)
T ss_pred CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-c
Confidence 356899999999995 46799999999999999999999999999999999999999999999876668999999852 1
Q ss_pred CCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 132 LDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+....++.+++..... ...+..++++|+.+++.....++++.+||| ||||||+||++-
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Ge~qrv~la~al 458 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSG-----GERNRVHLAKTL 458 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCH-----HHHHHHHHHHHH
Confidence 2223344444332111 112345678999999964456789999999 999999999864
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=9.1e-28 Score=194.07 Aligned_cols=132 Identities=28% Similarity=0.409 Sum_probs=102.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~ 120 (198)
+|.++|+++.|+++..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 4789999999952467999999999999999999999999999999999999999999988652 13
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--------------CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHH
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--------------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
++|++|++.... ..++.+++... ......+++.++++.+++. ...++++.+||| ||+|
T Consensus 81 i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~q 152 (243)
T TIGR02315 81 IGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSG-----GQQQ 152 (243)
T ss_pred eEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCH-----HHHH
Confidence 899999854222 22333333210 0112245678899999996 456788899999 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 153 rv~la~al 160 (243)
T TIGR02315 153 RVAIARAL 160 (243)
T ss_pred HHHHHHHH
Confidence 99999864
No 75
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=2.1e-27 Score=188.50 Aligned_cols=131 Identities=29% Similarity=0.361 Sum_probs=101.4
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------eeE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 121 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~i 121 (198)
|.++++++.|++.+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999954457999999999999999999999999999999999999999999987652 148
Q ss_pred EEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++..... .+..+++.. .... ...+++.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 81 ~~v~q~~~~~~~--~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 151 (214)
T cd03292 81 GVVFQDFRLLPD--RNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSG-----GEQQRVAIARAI 151 (214)
T ss_pred EEEecCchhccC--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCH-----HHHHHHHHHHHH
Confidence 999998643222 233333221 1111 1235678899999996 455778899999 999999999864
No 76
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=1.3e-27 Score=192.37 Aligned_cols=130 Identities=24% Similarity=0.333 Sum_probs=101.1
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEEE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~~ 123 (198)
|+++|+++.|+ +..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46889999995 467999999999999999999999999999999999999999999987652 24899
Q ss_pred eccccCCCCCCCCcHHHHHHH---hCCC-------------CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR---CFPG-------------VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
++|++..... .++.+++.. .... ...+.+.++++.+++. ...++++.+||| ||+||
T Consensus 80 v~q~~~l~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qr 151 (236)
T cd03219 80 TFQIPRLFPE--LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSY-----GQQRR 151 (236)
T ss_pred EecccccccC--CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCH-----HHHHH
Confidence 9998643222 233332211 1101 1234678899999996 456788999999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 152 v~la~al 158 (236)
T cd03219 152 LEIARAL 158 (236)
T ss_pred HHHHHHH
Confidence 9999864
No 77
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=3.4e-27 Score=187.62 Aligned_cols=134 Identities=22% Similarity=0.289 Sum_probs=105.5
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--------eEEE
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAV 123 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~--------~i~~ 123 (198)
++++|.++|+++.|+ ++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 356899999999995 4579999999999999999999999999999999999999999999987631 3899
Q ss_pred eccccCCCCCCCCcHHHHHHH--hC-CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR--CF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++... ...+..+++.. .. ....++.+.+++..+++. ...++++..||| ||||||+||++-
T Consensus 87 ~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 152 (214)
T PRK13543 87 LGHLPGLK--ADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSA-----GQKKRLALARLW 152 (214)
T ss_pred eecCcccc--cCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCH-----HHHHHHHHHHHH
Confidence 99875322 22244333221 11 122345678899999997 456788899999 999999999864
No 78
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=4.5e-27 Score=211.31 Aligned_cols=137 Identities=24% Similarity=0.351 Sum_probs=109.7
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999653 57999999999999999999999999999999999999999999998863 249
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----CccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. + ..+..+++....+..+++++.++++.+++.+.... ..++ -.|.+||||||||++|||+-
T Consensus 417 ~~v~Q~~~l-f--~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vg-e~g~~LSgGqrqRialARal 490 (574)
T PRK11160 417 SVVSQRVHL-F--SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLG-EGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred eEEcccchh-h--cccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhc-CCCCCCCHHHHHHHHHHHHH
Confidence 999999642 2 34666666544455678889999999999743322 1111 23567888999999999874
No 79
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=2.9e-27 Score=192.98 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=103.9
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 119 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-------------- 119 (198)
++|+++++++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4799999999995 4679999999999999999999999999999999999999999999876531
Q ss_pred ------eEEEeccccCCCCCCCCcHHHHH----HHhC-C--CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHH
Q 029133 120 ------RIAVFSQHHVDGLDLSSNPLLYM----MRCF-P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 120 ------~i~~~~q~~~~~~~~~~~~~~~~----~~~~-~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
.++|++|++...+....+...++ .... . ......+.++++.+++.....++++.+||| ||+|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~-----Gq~q 158 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG-----GMQQ 158 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH-----HHHH
Confidence 38999998632222222222221 1111 0 112456778999999964356788899999 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 159 rl~laral 166 (258)
T PRK11701 159 RLQIARNL 166 (258)
T ss_pred HHHHHHHH
Confidence 99999864
No 80
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-27 Score=193.31 Aligned_cols=132 Identities=27% Similarity=0.362 Sum_probs=104.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+|.++|+++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 588999999995 467999999999999999999999999999999999999999999988663 24899
Q ss_pred eccccCCCCCCCCcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
++|++.... ..++.+++.... .. .....+.++++.+++. ...++.+.+||| ||||||+||++.-
T Consensus 81 ~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Ge~qrv~la~al~ 150 (258)
T PRK13548 81 LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSG-----GEQQRVQLARVLA 150 (258)
T ss_pred EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCH-----HHHHHHHHHHHHh
Confidence 999854322 234444433211 11 1245678899999996 456788899999 9999999998753
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-27 Score=192.17 Aligned_cols=131 Identities=28% Similarity=0.419 Sum_probs=101.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------eeE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 121 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------~~i 121 (198)
|+++||++.|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999953267999999999999999999999999999999999999999999987652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh--------------CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC--------------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
+|++|+..... ..++.+++... ......+++.++++.+++. ...++++.+||| |||||
T Consensus 81 ~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSG-----GQQQR 152 (241)
T ss_pred EEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCH-----HHHHH
Confidence 99999864222 22333332210 0112245678899999996 456788899999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 153 v~la~al 159 (241)
T cd03256 153 VAIARAL 159 (241)
T ss_pred HHHHHHH
Confidence 9999864
No 82
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=2.7e-27 Score=194.42 Aligned_cols=133 Identities=23% Similarity=0.369 Sum_probs=104.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------- 118 (198)
.++|+++|+++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 45899999999995 567999999999999999999999999999999999999999999987652
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..++|++|++.... ..+..+++.. ...... ...+.++|+.+++. ...++++.+||| ||||||+||
T Consensus 84 ~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----Gq~qrv~la 155 (269)
T PRK11831 84 KRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSG-----GMARRAALA 155 (269)
T ss_pred hcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHHH
Confidence 24899999854222 2233333221 111111 34567889999997 456788999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 156 ral 158 (269)
T PRK11831 156 RAI 158 (269)
T ss_pred HHH
Confidence 874
No 83
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.95 E-value=1.9e-27 Score=190.47 Aligned_cols=133 Identities=19% Similarity=0.341 Sum_probs=105.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
.++|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 45799999999995 567999999999999999999999999999999999999999999988752 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHH---hC-CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMR---CF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +. .+..+++.. .. .......+.++++.+++.....++++.+||| ||+|||+||++-
T Consensus 84 ~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~-----G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTL-FG--DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSG-----GEKQRISLIRNL 152 (225)
T ss_pred EEEeccccc-cc--ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 999998542 22 244443321 11 1123456778999999964456788999999 999999999864
No 84
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=1.7e-27 Score=202.25 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=105.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++++++.|+ ...+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 588999999995 467999999999999999999999999999999999999999999998763 2599999
Q ss_pred cccCCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++..... .++.+++.... ... ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 81 Q~~~l~p~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg-----Gq~QRvalArAL 151 (353)
T PRK10851 81 QHYALFRH--MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSG-----GQKQRVALARAL 151 (353)
T ss_pred cCcccCCC--CcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 98643222 33333332110 011 245788999999996 567889999999 999999999874
No 85
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-27 Score=190.53 Aligned_cols=132 Identities=23% Similarity=0.298 Sum_probs=102.5
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
+|+++|+++.|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999543 17999999999999999999999999999999999999999999987642
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..++|++|++.... ..+..+++.. ..... ..+.+.++++.+++. +..++++.+||| ||+|||+||
T Consensus 81 ~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la 152 (233)
T cd03258 81 RRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSG-----GQKQRVGIA 152 (233)
T ss_pred HhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCH-----HHHHHHHHH
Confidence 24899999864322 2233333221 11111 235678899999996 456788899999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 153 ~al 155 (233)
T cd03258 153 RAL 155 (233)
T ss_pred HHH
Confidence 864
No 86
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=191.77 Aligned_cols=131 Identities=22% Similarity=0.348 Sum_probs=104.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
.|+++|+++.|+ +..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 588999999995 467999999999999999999999999999999999999999999988752 24899
Q ss_pred eccccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.. +. .+...++.. ........++.++++.+++..+..++++..||| ||+|||+||++-
T Consensus 82 ~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~-----G~~qrl~la~al 146 (241)
T PRK14250 82 VFQQPHL-FE--GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSG-----GEAQRVSIARTL 146 (241)
T ss_pred EecCchh-ch--hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCH-----HHHHHHHHHHHH
Confidence 9998532 22 244443321 111223456788999999964456788899999 999999999864
No 87
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-27 Score=194.94 Aligned_cols=134 Identities=28% Similarity=0.375 Sum_probs=105.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
++|+++++++.|++...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 47899999999953457999999999999999999999999999999999999999999998762 2489
Q ss_pred EeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++...+ ...+...++.. ...+. ...++.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg-----G~~qrv~laraL 153 (274)
T PRK13647 83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSY-----GQKKRVAIAGVL 153 (274)
T ss_pred EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 9999852111 12243333321 11111 235678899999996 566889999999 999999999874
No 88
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-27 Score=205.17 Aligned_cols=136 Identities=25% Similarity=0.365 Sum_probs=111.8
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++||++.|++++++|+++||+|++||++||+|+|||||||+||+|.++++ ++|+|.+++. ..||
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 359999999999766679999999999999999999999999999999999999 9999999873 2499
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccc------cCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL------SGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~L------SG~~ls~Ge~~rv~la~~~ 194 (198)
|+||+... +..+++.++....+..+++++.++++++++.+... +.+..+ -|..|||||||||+|||+-
T Consensus 429 ~VPQd~~L---FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~-~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 429 VVPQDSVL---FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVIS-RLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred EeCCcccc---cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHH-hccccchhhHhhcccccccchHHHHHHHHHH
Confidence 99999643 34577778777777788999999999999964332 222221 2345777999999999863
No 89
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=3.3e-27 Score=192.00 Aligned_cols=135 Identities=23% Similarity=0.282 Sum_probs=103.9
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------- 118 (198)
++|+++|+++.|+ ...+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4799999999995 456899999999999999999999999999999999999999999988642
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHH----HHhC---CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHH
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYM----MRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++...+....+....+ .... ....++.+.++++.+++.....++++..||| ||+|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg-----G~~q 155 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG-----GMQQ 155 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH-----HHHH
Confidence 138999998532222222322221 1111 0122466788999999964456788899999 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 156 rv~laral 163 (253)
T TIGR02323 156 RLQIARNL 163 (253)
T ss_pred HHHHHHHH
Confidence 99999874
No 90
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.95 E-value=1.7e-26 Score=205.69 Aligned_cols=137 Identities=28% Similarity=0.438 Sum_probs=109.0
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 369999999999653 47999999999999999999999999999999999999999999998763 249
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. + ..+..+++....+..+++++.++++.+++.+... +..+++ .|.+||||||||++|||+-
T Consensus 399 ~~v~Q~~~l-f--~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 399 AWVPQHPFL-F--AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAF 473 (529)
T ss_pred EEEcCCCcc-c--CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHH
Confidence 999999742 2 3466666654444456788999999999864321 222222 4567888999999999864
No 91
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.6e-28 Score=206.90 Aligned_cols=188 Identities=46% Similarity=0.710 Sum_probs=171.4
Q ss_pred CHHHHHHHhhhHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCCCCCeEEEEeeEEEcCCCC-cceeeeeEEE
Q 029133 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGI 79 (198)
Q Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~-~~l~~isl~i 79 (198)
+|.||++|++.++++..++||+++++++.....+..++.+.+.||.+......|.+++.+|+|.|..+. +++.++++++
T Consensus 308 ~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~ 387 (582)
T KOG0062|consen 308 LQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDR 387 (582)
T ss_pred HHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCcc
Confidence 478999999999999999999999999988888888888888888754445578999999999997665 7899999999
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 159 (198)
+.-++++++|+||+||||+++++.+...|..|.+.+.++.+|+|+.|++...++...+.++.+...+++..+++++..|.
T Consensus 388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~ 467 (582)
T KOG0062|consen 388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLG 467 (582)
T ss_pred chhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777888888888888999999999999
Q ss_pred hcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 160 SFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 160 ~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.||++.+...+++..||| |||-||++|..
T Consensus 468 ~~Gl~g~la~~si~~LSG-----GQKsrvafA~~ 496 (582)
T KOG0062|consen 468 SFGLSGELALQSIASLSG-----GQKSRVAFAAC 496 (582)
T ss_pred hcCCCchhhhccccccCC-----cchhHHHHHHH
Confidence 999999999999999999 99999999864
No 92
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=4.9e-27 Score=184.85 Aligned_cols=132 Identities=19% Similarity=0.256 Sum_probs=103.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~ 124 (198)
+|.++|+++.|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 478999999995 467999999999999999999999999999999999999999999998752 248999
Q ss_pred ccccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+|+.... ...++.+++... .....+..+.++++.+++. +..++++.+||| ||+|||+||++.-
T Consensus 80 ~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~~rv~laral~ 143 (200)
T PRK13540 80 GHRSGIN--PYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSS-----GQKRQVALLRLWM 143 (200)
T ss_pred ccccccC--cCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCH-----HHHHHHHHHHHHh
Confidence 9875322 223444333211 1112345678999999996 455788888999 9999999998753
No 93
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=3.4e-27 Score=200.94 Aligned_cols=131 Identities=19% Similarity=0.236 Sum_probs=105.4
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--CeEEecCc---------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAK---------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~--G~i~~~~~---------~~i~~ 123 (198)
.|++++|++.|+ ...+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+++. ..++|
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 488999999995 4679999999999999999999999999999999999999999 99998753 25999
Q ss_pred eccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++..... .++..++.. ...+. ...++.++++.++|. ...++++.+||| ||||||+||++-
T Consensus 84 vfQ~~~l~p~--~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSg-----Gq~QRvaLARAL 152 (362)
T TIGR03258 84 LFQNYALFPH--LKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSG-----GMQQRIAIARAI 152 (362)
T ss_pred EECCcccCCC--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCH-----HHHHHHHHHHHH
Confidence 9998643322 333333321 11111 245688999999997 567889999999 999999999874
No 94
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.1e-27 Score=197.09 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=105.7
Q ss_pred CCCCeEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------
Q 029133 51 PGPPIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------- 118 (198)
Q Consensus 51 ~~~~~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------- 118 (198)
...++|+++|+++.|++. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 445789999999999632 35999999999999999999999999999999999999999999987631
Q ss_pred -------------------eeEEEeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccc
Q 029133 119 -------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMY 173 (198)
Q Consensus 119 -------------------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~ 173 (198)
..++|++|++...+ +..++.+++... ..+. ...++.++++.+++.....++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 13899999863112 122444433211 1111 134677899999996445678889
Q ss_pred cccCCCCCChHHHHHhhcccc
Q 029133 174 TLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 174 ~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+||| ||||||+||++-
T Consensus 176 ~LSg-----GqkqRvaiAraL 191 (320)
T PRK13631 176 GLSG-----GQKRRVAIAGIL 191 (320)
T ss_pred cCCH-----HHHHHHHHHHHH
Confidence 9999 999999999874
No 95
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.9e-27 Score=190.49 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=102.1
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEe
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~ 124 (198)
++++++++.|++...+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999953256999999999999999999999999999999999999999999988652 248999
Q ss_pred ccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCc-ccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~-~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++.... ..++.+++.. ..... ..+.+.++++.+++.. ...++++.+||| ||+|||+||++-
T Consensus 81 ~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~-----G~~qrv~laral 150 (242)
T cd03295 81 IQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSG-----GQQQRVGVARAL 150 (242)
T ss_pred ccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCH-----HHHHHHHHHHHH
Confidence 99864322 2333333221 11111 2356788999999974 256788899999 999999999874
No 96
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=3.7e-27 Score=193.12 Aligned_cols=135 Identities=19% Similarity=0.280 Sum_probs=103.9
Q ss_pred eEEEEeeEEEcCC--------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------
Q 029133 55 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------- 118 (198)
+|+++||++.|++ .+.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 5889999999952 357999999999999999999999999999999999999999999988652
Q ss_pred ------eeEEEeccccCCCCCCCCcHHHHHH---HhC---C-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 119 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCF---P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~---~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++...+....++.+++. ... . ....+++.++++.+++.....++++..||| ||+
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg-----Ge~ 156 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSG-----GQL 156 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH-----HHH
Confidence 1489999985211222233333221 111 1 122456788999999964456788899999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 157 qrv~laral 165 (265)
T TIGR02769 157 QRINIARAL 165 (265)
T ss_pred HHHHHHHHH
Confidence 999999874
No 97
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=4.6e-27 Score=187.85 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=101.7
Q ss_pred eEEEEeeEEEcCC------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec--C---c-----
Q 029133 55 IISFSDASFGYPG------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--A---K----- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~--~---~----- 118 (198)
+|+++|+++.|++ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++ + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999952 1469999999999999999999999999999999999999999999985 2 1
Q ss_pred ---------eeEEEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCCh
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G 183 (198)
..++|++|++.... ..++.+++.. ...+ ...+.+.++++.+++.....++++.+||| |
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~-----G 153 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSG-----G 153 (224)
T ss_pred HHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCH-----H
Confidence 24899999864322 2233322211 1111 12456788999999974445678898999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+||++||++.
T Consensus 154 ~~qrl~laral 164 (224)
T TIGR02324 154 EQQRVNIARGF 164 (224)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 98
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.3e-27 Score=200.73 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=107.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 123 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~ 123 (198)
.++|+++++++.|+ +..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 45799999999995 467899999999999999999999999999999999999999999998763 24999
Q ss_pred eccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.....+ ++.+++... ..+. ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 96 vfQ~~~lfp~l--tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSg-----Gq~QRVaLARAL 164 (377)
T PRK11607 96 MFQSYALFPHM--TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSG-----GQRQRVALARSL 164 (377)
T ss_pred EeCCCccCCCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99996433223 334433211 1111 245678999999997 467889999999 999999999874
No 99
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.95 E-value=2.9e-27 Score=194.01 Aligned_cols=136 Identities=22% Similarity=0.275 Sum_probs=103.1
Q ss_pred CeEEEEeeEEEcCC--------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------
Q 029133 54 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------- 118 (198)
++|+++||++.|+. ..++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999952 246999999999999999999999999999999999999999999988652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
..++|++|++...+....+....+. ..... ...+.+.++++.+++.....++++.+||| ||+||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~-----G~~qr 157 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAP-----GQKQR 157 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCH-----HHHHH
Confidence 2489999985321222223222221 11111 12356788999999954455777888999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 158 v~laral 164 (267)
T PRK15112 158 LGLARAL 164 (267)
T ss_pred HHHHHHH
Confidence 9999864
No 100
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=3.4e-27 Score=189.52 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=101.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEEE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~~ 123 (198)
|+++|+++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 46899999995 467999999999999999999999999999999999999999999987642 24899
Q ss_pred eccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++..... .+..+++.. ..... ....+.++++.+++. ...++++..||| ||||||+||++-
T Consensus 80 ~~q~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~al 148 (232)
T cd03218 80 LPQEASIFRK--LTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSG-----GERRRVEIARAL 148 (232)
T ss_pred ecCCcccccc--CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 9998642222 233333221 11111 234567899999997 456788899999 999999999874
No 101
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.95 E-value=2.6e-27 Score=186.90 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=99.6
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce---------------eEE
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIA 122 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~---------------~i~ 122 (198)
++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468999995 4679999999999999999999999999999999999999999999876531 489
Q ss_pred EeccccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.... ..+..+++. ....+ ...+++.++++.+++. ...++++.+||| ||+||++||++-
T Consensus 80 ~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~-----G~~qr~~laral 149 (206)
T TIGR03608 80 YLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSG-----GEQQRVALARAI 149 (206)
T ss_pred EEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 9999854222 223333221 11111 1245678899999996 456788899999 999999999874
No 102
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.5e-27 Score=187.75 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=101.0
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~ 125 (198)
|+++++++.|+ ..++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 457999999999999 99999999999999999999999999999998762 2489999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
|++.... ..+..+++.. ...+ ...+.+.++++.+++. ...++++.+||| ||+|||+||++.-
T Consensus 79 q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al~ 146 (211)
T cd03264 79 QEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSG-----GMRRRVGIAQALV 146 (211)
T ss_pred CCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCH-----HHHHHHHHHHHHh
Confidence 9864322 2233332211 1111 1245678899999996 455788899999 9999999998743
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.95 E-value=5.8e-27 Score=187.49 Aligned_cols=135 Identities=22% Similarity=0.332 Sum_probs=100.5
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
+|++++|++.|++. ..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999543 26999999999999999999999999999999999999999999987652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHH---HhC-CCCcH---HH-HHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMM---RCF-PGVPE---QK-LRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~---~~~-~~~~~---~~-~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++|++|++...+....++.+++. ... ..... .. +.++++.+++.....++++.+||| ||+|||+
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~-----G~~qrv~ 155 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSG-----GQRQRVA 155 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCH-----HHHHHHH
Confidence 2489999986211222233333321 111 11111 22 247889999953456788899999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++.
T Consensus 156 laral 160 (228)
T cd03257 156 IARAL 160 (228)
T ss_pred HHHHH
Confidence 99864
No 104
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.95 E-value=1.4e-26 Score=207.84 Aligned_cols=137 Identities=22% Similarity=0.321 Sum_probs=109.3
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 35999999999964 357999999999999999999999999999999999999999999998873 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +..+..+++....+ ..+++++.++++.+++.+... +..+++ .|.+||||||||++|||+-
T Consensus 409 ~~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 409 ALVSQDVVL---FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred eEEccCccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHH
Confidence 999999742 34566666654433 567888999999999864221 222322 3667888999999999863
No 105
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.95 E-value=1.7e-26 Score=208.02 Aligned_cols=137 Identities=23% Similarity=0.306 Sum_probs=108.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++++++.|++.+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..|+
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 36999999999965467999999999999999999999999999999999999999999998863 3599
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. +..+..+++....+..+++++.++++.+++.+... +..+.+ .|.+||||||||++|||+-
T Consensus 413 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARal 486 (588)
T PRK13657 413 VVFQDAGL---FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARAL 486 (588)
T ss_pred EEecCccc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHH
Confidence 99999742 24566666654444556788889999988753221 112222 3556888999999999874
No 106
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=4.1e-27 Score=188.11 Aligned_cols=130 Identities=22% Similarity=0.302 Sum_probs=103.5
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------eeEEEecccc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH 128 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------~~i~~~~q~~ 128 (198)
|+++++++.|+ ++.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 46899999995 467999999999999999999999999999999999999999999988653 2589999985
Q ss_pred CCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 129 VDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.... ..++.+++.. .........+.++++.+++. ...++++..||| ||+|||+||++-
T Consensus 80 ~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~~rv~laral 139 (223)
T TIGR03740 80 PLYE--NLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSL-----GMKQRLGIAIAL 139 (223)
T ss_pred Cccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCH-----HHHHHHHHHHHH
Confidence 3222 2233333321 11233466788999999997 456788899999 999999999864
No 107
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7e-27 Score=193.64 Aligned_cols=134 Identities=20% Similarity=0.301 Sum_probs=103.5
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
+|++++|++.|++. +++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 48899999999632 36999999999999999999999999999999999999999999987652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCc-ccccCccccccCCCCCChHHHHHhh
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~-~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
..++|++|++...+ +..++.+++.. ...+. ..+++.++++.+++.. ...++++..||| ||+|||+|
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSg-----Gq~qrv~i 155 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSG-----GQKRRVAI 155 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCH-----HHHHHHHH
Confidence 24899999853221 12344443321 11122 2346788999999962 356888999999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 156 AraL 159 (287)
T PRK13637 156 AGVV 159 (287)
T ss_pred HHHH
Confidence 9874
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.5e-27 Score=193.82 Aligned_cols=134 Identities=25% Similarity=0.336 Sum_probs=103.5
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
+|.++|+++.|++. +.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 57899999999532 46999999999999999999999999999999999999999999988653
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++|++|++...+. ..++.+++.. ..... ..+.+.++++.+++.....++++.+||| ||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg-----Gq~qrl~ 155 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSG-----GQMRRVA 155 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCH-----HHHHHHH
Confidence 148999998521111 2243333321 11111 2346788999999964456889999999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++-
T Consensus 156 laral 160 (287)
T PRK13641 156 IAGVM 160 (287)
T ss_pred HHHHH
Confidence 99864
No 109
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-27 Score=208.07 Aligned_cols=139 Identities=26% Similarity=0.367 Sum_probs=109.2
Q ss_pred CCeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------e
Q 029133 53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~ 119 (198)
...|+++||+|.|+.+ .++|+|+||+|+|||++|||||||+||||+.++|..+|.|++|+|.+++. .
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 3479999999999854 46999999999999999999999999999999999999999999998873 3
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc-----cCccccccCCCCCChHHHHHhhcccc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA-----LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.||+|.|+|.. +..++.+++.......++++++++.+..+..+-.. ......--|..||||||||+||||+.
T Consensus 543 ~Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 543 KIGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred Heeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 59999999863 34566777776666777888887777666532111 11122233455666999999999974
No 110
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.95 E-value=1.6e-26 Score=207.50 Aligned_cols=137 Identities=26% Similarity=0.406 Sum_probs=111.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++||++.|++++++|+|+||+|++||++|||||||||||||+++|+++++|++|+|.+++. ..|+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 34999999999965678999999999999999999999999999999999999999999999652 3599
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc------ccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. + ..+..+++....+..+++++.++++..++.+.. .+..++ -.|.+||||||||++|||+-
T Consensus 407 ~V~Qd~~L-F--~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARal 480 (567)
T COG1132 407 IVSQDPLL-F--SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARAL 480 (567)
T ss_pred EEccccee-e--cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHHH
Confidence 99999742 2 356777776665556788899998888765322 233333 45677888999999999873
No 111
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=4.9e-27 Score=188.08 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=99.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCCeEEecCc------------
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAK------------ 118 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~-----~p~~G~i~~~~~------------ 118 (198)
|+++||++.|+ .+.+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 46899999995 467999999999999999999999999999999999999 999999988652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCcccccCc--cccccCCCCCChHHHHH
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTGNLALQP--MYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~L~~~~l~~~~~~~~--~~~LSG~~ls~Ge~~rv 188 (198)
..++|++|++.. +. .++.+++.. ..... ..+++.++++.+++.. ..+++ +.+||| ||||||
T Consensus 80 ~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSg-----G~~qrv 150 (227)
T cd03260 80 RRRVGMVFQKPNP-FP--GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSG-----GQQQRL 150 (227)
T ss_pred HhhEEEEecCchh-cc--ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCH-----HHHHHH
Confidence 148999998642 22 344333321 11111 2456788999999974 33444 588888 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 151 ~la~al 156 (227)
T cd03260 151 CLARAL 156 (227)
T ss_pred HHHHHH
Confidence 999864
No 112
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=3.1e-27 Score=187.15 Aligned_cols=130 Identities=28% Similarity=0.421 Sum_probs=100.3
Q ss_pred EEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEec
Q 029133 58 FSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFS 125 (198)
Q Consensus 58 ~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~~ 125 (198)
++++++.|++. +.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 67999999531 57999999999999999999999999999999999999999999988652 2489999
Q ss_pred cccCC-CCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 126 QHHVD-GLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 126 q~~~~-~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
|++.. ... .+..+++.. .... .....+.++++.+++. ...++++..||| ||+|||+||++.-
T Consensus 82 q~~~~~~~~--~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~laral~ 150 (211)
T cd03225 82 QNPDDQFFG--PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSG-----GQKQRVAIAGVLA 150 (211)
T ss_pred cChhhhcCC--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCH-----HHHHHHHHHHHHh
Confidence 98521 122 233333221 1111 1235677899999996 456788899999 9999999998753
No 113
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7e-27 Score=195.09 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=103.9
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
.|.++||++.|++. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48899999999643 25999999999999999999999999999999999999999999988521
Q ss_pred -----------------------eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCccccc
Q 029133 119 -----------------------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLAL 169 (198)
Q Consensus 119 -----------------------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~ 169 (198)
..+||++|++...+. ..++.+++.. ...+. ..+++.++++.++|..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 138999998522221 2344443321 11122 24567899999999645678
Q ss_pred CccccccCCCCCChHHHHHhhcccc
Q 029133 170 QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 170 ~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+++.+||| ||||||+||++-
T Consensus 161 ~~~~~LSg-----GqkqrvalA~aL 180 (305)
T PRK13651 161 RSPFELSG-----GQKRRVALAGIL 180 (305)
T ss_pred CChhhCCH-----HHHHHHHHHHHH
Confidence 89999999 999999999864
No 114
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=2.8e-27 Score=187.63 Aligned_cols=130 Identities=21% Similarity=0.265 Sum_probs=101.4
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------eeEE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA 122 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~i~ 122 (198)
|+++|+++.|+ ...+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEEC-CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 46899999995 467999999999999999999999999999999999999999999988652 2489
Q ss_pred EeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++..... .+..+++.. ..... ..+++.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 80 ~~~q~~~~~~~--~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al 150 (213)
T cd03262 80 MVFQQFNLFPH--LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSG-----GQQQRVAIARAL 150 (213)
T ss_pred EEecccccCCC--CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCH-----HHHHHHHHHHHH
Confidence 99998643222 233333211 11111 234678899999996 456788999999 999999999864
No 115
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.7e-27 Score=197.83 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=106.5
Q ss_pred CCeEEEEeeEEEcCC---------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----
Q 029133 53 PPIISFSDASFGYPG---------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~---------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----- 118 (198)
.++|+++||++.|+. ...+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 357999999999952 246899999999999999999999999999999999999999999988652
Q ss_pred ---------eeEEEeccccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCC
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSG 182 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~ 182 (198)
..|+|++|++...++...+....+. ..+.. ...+++.++|+.+++.....++++.+|||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg----- 157 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG----- 157 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH-----
Confidence 2499999996423333333322221 11111 12456889999999965456888999999
Q ss_pred hHHHHHhhcccc
Q 029133 183 GTNSRPCFVPRR 194 (198)
Q Consensus 183 Ge~~rv~la~~~ 194 (198)
||+|||+||++-
T Consensus 158 Gq~QRv~iArAL 169 (327)
T PRK11308 158 GQRQRIAIARAL 169 (327)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 116
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=185.92 Aligned_cols=133 Identities=22% Similarity=0.265 Sum_probs=102.9
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
+++++++|+..|+ .-.+|++|||++++||+++|+|+||+||||||++|+|+.+|.+|+|.+++. ..|
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5799999999995 567999999999999999999999999999999999999999999998763 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh--C-CC--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC--F-PG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~-~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+||-..-+. ..++.+++... . .. .....+.++.+.|---.+..+++.++||| ||+|.++||++-
T Consensus 81 ~~VPegR~iF~--~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSG-----GEQQMLAiaRAL 151 (237)
T COG0410 81 AYVPEGRRIFP--RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSG-----GEQQMLAIARAL 151 (237)
T ss_pred EeCcccccchh--hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCCh-----HHHHHHHHHHHH
Confidence 99999743222 33444443321 1 11 11222666777775434667888899999 999999999874
No 117
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=4.2e-27 Score=190.03 Aligned_cols=131 Identities=24% Similarity=0.307 Sum_probs=102.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------eeE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 121 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~i 121 (198)
+|+++++++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999995 467999999999999999999999999999999999999999999987652 148
Q ss_pred EEeccccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++..... .++.+++.. .... ...+.+.++++.+++. ...++++..||| ||+|||+||++-
T Consensus 80 ~~~~q~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrv~la~al 151 (240)
T PRK09493 80 GMVFQQFYLFPH--LTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSG-----GQQQRVAIARAL 151 (240)
T ss_pred EEEecccccCCC--CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCH-----HHHHHHHHHHHH
Confidence 999998542222 233333221 0111 1235677899999996 456788899999 999999999874
No 118
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.7e-27 Score=194.93 Aligned_cols=134 Identities=27% Similarity=0.325 Sum_probs=103.8
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
.|++++|++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999532 46999999999999999999999999999999999999999999988653
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++|++|++...+. ..++.+++.. ...+. ..+++.++++.+++.....++++.+||| ||+|||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg-----Gq~qrv~ 155 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSG-----GQMRRVA 155 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCH-----HHHHHHH
Confidence 148999998531111 2244433321 11111 1346788999999964556788999999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++-
T Consensus 156 lAraL 160 (290)
T PRK13634 156 IAGVL 160 (290)
T ss_pred HHHHH
Confidence 99864
No 119
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9.9e-27 Score=192.83 Aligned_cols=134 Identities=23% Similarity=0.334 Sum_probs=103.4
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
+|+++|+++.|+.. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 48899999999632 25899999999999999999999999999999999999999999988652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++|++|++...+ +..++.+++... ..+. ...++.++++.+++.....++++..||| ||||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg-----Gqkqrva 154 (288)
T PRK13643 81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSG-----GQMRRVA 154 (288)
T ss_pred HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCH-----HHHHHHH
Confidence 14899999852111 122444433211 1111 2346788999999964456788999999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++-
T Consensus 155 iA~aL 159 (288)
T PRK13643 155 IAGIL 159 (288)
T ss_pred HHHHH
Confidence 99864
No 120
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.4e-27 Score=192.42 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=102.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------eeEEEecc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQ 126 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------~~i~~~~q 126 (198)
+|.++++++.|++++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6899999999954467999999999999999999999999999999999999999999998763 24999999
Q ss_pred ccCCCCCCCCcHHHHHH----H---h--CC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMM----R---C--FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~---~--~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++.............+. . . .. ......+.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----G~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSG-----GQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 85321111111111111 0 0 00 11245677899999996 456788999999 999999999864
No 121
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=2.9e-26 Score=205.98 Aligned_cols=137 Identities=23% Similarity=0.350 Sum_probs=108.1
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
..|+++||++.|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 469999999999642 57999999999999999999999999999999999999999999998862 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++.. +..+..+++....+..+++++.++++.+++.+... +..+. -.|.+||||||||++|||+-
T Consensus 416 i~~~~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~-~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 416 MALVPQDPVL---FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred ceEEccCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeC-CCCCcCCHHHHHHHHHHHHH
Confidence 9999999742 34566666654444456788889999998853221 11222 23567888999999999874
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=3.9e-27 Score=187.88 Aligned_cols=130 Identities=20% Similarity=0.232 Sum_probs=99.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEEE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~~ 123 (198)
|+++|+++.|+ +.++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 46899999995 457999999999999999999999999999999999999999999987652 23899
Q ss_pred eccccCCCCCCCCcHHHHHHH--hCC--CCcHHHHHHHHHhc-CCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR--CFP--GVPEQKLRAHLGSF-GVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~L~~~-~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.... ..+..+++.. ... ......+.++++.+ ++. ...++++.+||| ||+|||+||++-
T Consensus 80 ~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 147 (222)
T cd03224 80 VPEGRRIFP--ELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSG-----GEQQMLAIARAL 147 (222)
T ss_pred eccccccCC--CCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCH-----HHHHHHHHHHHH
Confidence 999864222 2233333321 111 11234566788888 464 456788899999 999999999864
No 123
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=6.2e-27 Score=197.37 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=106.8
Q ss_pred CCeEEEEeeEEEcCC------------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--
Q 029133 53 PPIISFSDASFGYPG------------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~------------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-- 118 (198)
.++|+++||++.|+. ...+++|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999952 145899999999999999999999999999999999999999999988652
Q ss_pred ------------eeEEEeccccCCCCCCCCcHHHHHHH---hC-CCCc----HHHHHHHHHhcCCCcccccCccccccCC
Q 029133 119 ------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF-PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGF 178 (198)
Q Consensus 119 ------------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~ 178 (198)
..++|++|++...+....++.+++.. .. ...+ .+.+.++|+.+++..+..++++.+|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg- 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG- 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH-
Confidence 25999999963223333344443321 11 1112 356778999999965566888999999
Q ss_pred CCCChHHHHHhhcccc
Q 029133 179 GCSGGTNSRPCFVPRR 194 (198)
Q Consensus 179 ~ls~Ge~~rv~la~~~ 194 (198)
||+|||+||++.
T Consensus 165 ----G~~QRv~iArAL 176 (331)
T PRK15079 165 ----GQCQRIGIARAL 176 (331)
T ss_pred ----HHHHHHHHHHHH
Confidence 999999999874
No 124
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8e-27 Score=192.11 Aligned_cols=133 Identities=23% Similarity=0.324 Sum_probs=102.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~ 122 (198)
+|+++|+++.|++...+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 4789999999954456999999999999999999999999999999999999999999987652 2389
Q ss_pred EeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++...+ ...+..+++.. ...+. ..+.+.++++.+++. ...++++..||| ||+|||+||++-
T Consensus 81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrv~laral 151 (274)
T PRK13644 81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSG-----GQGQCVALAGIL 151 (274)
T ss_pred EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 9999853211 12233333321 11111 235677889999996 456788899999 999999999864
No 125
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.9e-27 Score=190.46 Aligned_cols=132 Identities=27% Similarity=0.406 Sum_probs=103.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+|.++|++++|+ ++.+|+++||+|.+|++++|+|+|||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 589999999995 567999999999999999999999999999999999999999999988763 14899
Q ss_pred eccccCCCCCCCCcHHHHHHHh-------C---CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRC-------F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|+..... ..+..+++... . .......+.++++.+++. ...++++.+||| ||+|||+||++
T Consensus 81 ~~q~~~~~~--~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPE--GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSG-----GQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCC--CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCH-----HHHHHHHHHHH
Confidence 999864222 22333333211 0 111245678899999996 456788899999 99999999987
Q ss_pred cc
Q 029133 194 RD 195 (198)
Q Consensus 194 ~~ 195 (198)
.-
T Consensus 153 l~ 154 (255)
T PRK11231 153 LA 154 (255)
T ss_pred Hh
Confidence 53
No 126
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.2e-27 Score=192.29 Aligned_cols=133 Identities=23% Similarity=0.334 Sum_probs=105.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
.++|.++++++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 9 ~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 46899999999995 467999999999999999999999999999999999999999999998762 148
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhC----------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCF----------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
+|++|+..... ..+..+++.... .....+++.++++.+++. ...++++.+||| ||+|||+||
T Consensus 88 ~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la 159 (265)
T PRK10575 88 AYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSG-----GERQRAWIA 159 (265)
T ss_pred EEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCH-----HHHHHHHHH
Confidence 99999853222 223433332110 011245678899999996 456788899999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 160 ral 162 (265)
T PRK10575 160 MLV 162 (265)
T ss_pred HHH
Confidence 864
No 127
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.4e-27 Score=193.75 Aligned_cols=134 Identities=23% Similarity=0.289 Sum_probs=103.4
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
.|++++|++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48899999999532 36999999999999999999999999999999999999999999988652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..|+|++|++...+. ..++.+++... ..+. ..+++.++++.+++.....++++.+||| ||+|||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg-----Gq~qrv~ 155 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSG-----GQMRKIA 155 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH-----HHHHHHH
Confidence 148999998521111 12444433211 1111 2356788999999963456788999999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++-
T Consensus 156 laraL 160 (286)
T PRK13646 156 IVSIL 160 (286)
T ss_pred HHHHH
Confidence 99864
No 128
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.8e-27 Score=189.78 Aligned_cols=131 Identities=17% Similarity=0.256 Sum_probs=103.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~ 122 (198)
+|+++++++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 689999999995 467999999999999999999999999999999999999999999988652 2489
Q ss_pred EeccccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.... ..++.+++... ... .....+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 82 ~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 152 (241)
T PRK10895 82 YLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSG-----GERRRVEIARAL 152 (241)
T ss_pred EeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCH-----HHHHHHHHHHHH
Confidence 9999853222 22333333211 111 1235678899999996 456788899999 999999999864
No 129
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=7.5e-27 Score=189.54 Aligned_cols=131 Identities=20% Similarity=0.277 Sum_probs=102.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------- 118 (198)
+|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 689999999995 457999999999999999999999999999999999999999999987531
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
..++|++|++.... ..++.+++.. ..... ..+.+.++++.+++. ...++++.+||| ||+|||
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSG-----GQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCCh-----HHHHHH
Confidence 24899999864222 2233333211 11111 234677899999996 455788899999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 154 ~la~al 159 (250)
T PRK11264 154 AIARAL 159 (250)
T ss_pred HHHHHH
Confidence 999874
No 130
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.3e-26 Score=187.26 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=103.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++|+++.|+ +..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999995 467999999999999999999999999999999999999999999998652 148
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
+|++|++.... ..+..+++.... ......++.++++.+++. ...++++.+||| ||+||
T Consensus 80 ~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----Ge~qr 151 (242)
T TIGR03411 80 GRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSH-----GQKQW 151 (242)
T ss_pred eEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHH
Confidence 99999854322 223333322110 011245678999999997 456788899999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 152 v~laral 158 (242)
T TIGR03411 152 LEIGMLL 158 (242)
T ss_pred HHHHHHH
Confidence 9999874
No 131
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=6.6e-27 Score=190.78 Aligned_cols=134 Identities=20% Similarity=0.242 Sum_probs=104.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------- 118 (198)
..|+++||++.|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4689999999995 467999999999999999999999999999999999999999999987652
Q ss_pred ---------eeEEEeccccCCCCCCCCcHHHHHHH----hCC---CCcHHHHHHHHHhcCCCcccccCccccccCCCCCC
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR----CFP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSG 182 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~ 182 (198)
..++|++|++... ...++.+++.. ... .....++.++++.+++.....++++.+|||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~--~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~----- 155 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG----- 155 (257)
T ss_pred cchHHHHHhhceEEEecCcccC--CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH-----
Confidence 2489999986422 12344333321 111 112456788999999974434678899999
Q ss_pred hHHHHHhhccccc
Q 029133 183 GTNSRPCFVPRRD 195 (198)
Q Consensus 183 Ge~~rv~la~~~~ 195 (198)
||+|||+||++--
T Consensus 156 G~~qrv~laral~ 168 (257)
T PRK10619 156 GQQQRVSIARALA 168 (257)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 132
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=191.81 Aligned_cols=134 Identities=21% Similarity=0.344 Sum_probs=104.4
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
++|+++|+++.|++ ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 47899999999953 245999999999999999999999999999999999999999999988763 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++...+ ...++.+++... ..+. ..+++.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 83 i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSg-----Gq~qrv~lAral 155 (279)
T PRK13650 83 IGMVFQNPDNQF-VGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSG-----GQKQRVAIAGAV 155 (279)
T ss_pred ceEEEcChHHhc-ccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCH-----HHHHHHHHHHHH
Confidence 899999852111 122433433211 1111 235678899999996 456888999999 999999999874
No 133
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=2.8e-27 Score=204.11 Aligned_cols=185 Identities=42% Similarity=0.737 Sum_probs=151.1
Q ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHhccc---cccccCCCCCCCCCCCCCCCCCCCeEEEEeeEEEcCCCCcceeeeeEE
Q 029133 3 SFIDKFRY-NAKRASLVQSRIKALERMGH---VDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFG 78 (198)
Q Consensus 3 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~l~~isl~ 78 (198)
.+|.++.. .++-.+++++..+.++++.. .+.+..+....+.|+.... .++|.+.+.|++|.|+++..++++++|-
T Consensus 334 ~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~-~p~pvi~~~nv~F~y~~~~~iy~~l~fg 412 (614)
T KOG0927|consen 334 DLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGK-IPPPVIMVQNVSFGYSDNPMIYKKLNFG 412 (614)
T ss_pred HHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccC-CCCCeEEEeccccCCCCcchhhhhhhcc
Confidence 34555444 24455677778887777742 3444555566676765433 3478999999999997766899999999
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCC-CcHHHHHHH
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAH 157 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (198)
|..++++++|||||||||||||+++|.+.|+.|.|.......++++.|+....++++.+...+++..++. ...+.++.+
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~i 492 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI 492 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHH
Confidence 9999999999999999999999999999999999988877888999998766778888888887766664 567889999
Q ss_pred HHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 158 LGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 158 L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
|.+|||+++....|+.+||+ |||.||++|++
T Consensus 493 lgrfgLtgd~q~~p~~~LS~-----Gqr~rVlFa~l 523 (614)
T KOG0927|consen 493 LGRFGLTGDAQVVPMSQLSD-----GQRRRVLFARL 523 (614)
T ss_pred HHHhCCCccccccchhhccc-----ccchhHHHHHH
Confidence 99999998888999999999 99999999986
No 134
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=6.7e-27 Score=187.64 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=99.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEEE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~~ 123 (198)
|+++||++.|+ ..++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 46899999995 467999999999999999999999999999999999999999999988652 24899
Q ss_pred eccccCCCCCCCCcHHHHHHH--hCCCC-cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMR--CFPGV-PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++.... ..+..+++.. ..... ..+.+.++++.+++.....++++.+||| ||+|||+||++-
T Consensus 80 ~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~-----G~~qrv~la~al 146 (230)
T TIGR03410 80 VPQGREIFP--RLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSG-----GQQQQLAIARAL 146 (230)
T ss_pred eccCCcccC--CCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCH-----HHHHHHHHHHHH
Confidence 999864322 2233333221 11111 2344567788876323456788999999 999999999864
No 135
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.6e-26 Score=191.19 Aligned_cols=134 Identities=24% Similarity=0.342 Sum_probs=105.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------ee
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~ 120 (198)
++|+++|+++.|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 47999999999953467999999999999999999999999999999999999999999988752 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++...+ ...+..+++.. ...+. ..+.+.++++.+++. ...++++..||| ||+||++||++-
T Consensus 84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~-----G~~qrl~laraL 156 (283)
T PRK13636 84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSF-----GQKKRVAIAGVL 156 (283)
T ss_pred EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCH-----HHHHHHHHHHHH
Confidence 899999863211 12344443321 11111 135678899999996 466889999999 999999999864
No 136
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.9e-27 Score=191.77 Aligned_cols=132 Identities=25% Similarity=0.336 Sum_probs=100.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------eeE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 121 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~i 121 (198)
+|+++||++.|+ ++.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 478999999995 467999999999999999999999999999999999999999999987652 148
Q ss_pred EEeccccCCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++...+. ..+...++. ....+. ..+.+.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSH-----GQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCH-----HHHHHHHHHHHH
Confidence 999998532111 112222211 111111 134567899999996 456788899999 999999999864
No 137
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=9.4e-27 Score=206.63 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=106.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
.++|+++|+++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 567999999999999999999999999999999999999999999998752 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhC--CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++... ...++.+++.... .....+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 88 i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la~aL 155 (510)
T PRK15439 88 IYLVPQEPLLF--PNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEV-----ADRQIVEILRGL 155 (510)
T ss_pred EEEEeccCccC--CCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCH-----HHHHHHHHHHHH
Confidence 89999986422 2334444433211 112346788999999997 456888999999 999999999864
No 138
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=189.01 Aligned_cols=133 Identities=19% Similarity=0.290 Sum_probs=103.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++|+++.|+ +.++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4799999999995 567999999999999999999999999999999999999999999988653 137
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh-------------C-----CC---CcHHHHHHHHHhcCCCcccccCccccccCCCC
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC-------------F-----PG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~-------------~-----~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~l 180 (198)
+|++|++..... .+..+++... . .. ...+.+.++++.+++. ...++++.+|||
T Consensus 83 ~~~~q~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~--- 156 (255)
T PRK11300 83 VRTFQHVRLFRE--MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAY--- 156 (255)
T ss_pred EEeccCcccCCC--CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCH---
Confidence 889998643222 2333332210 0 00 1124577889999996 456888999999
Q ss_pred CChHHHHHhhccccc
Q 029133 181 SGGTNSRPCFVPRRD 195 (198)
Q Consensus 181 s~Ge~~rv~la~~~~ 195 (198)
||+|||+||++.-
T Consensus 157 --G~~qrv~la~al~ 169 (255)
T PRK11300 157 --GQQRRLEIARCMV 169 (255)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999998743
No 139
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-26 Score=189.99 Aligned_cols=134 Identities=28% Similarity=0.411 Sum_probs=104.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
.++.++|+++.|++...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 36899999999954456999999999999999999999999999999999999999999998653 1489
Q ss_pred EeccccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++...+ ...++.+++.. ...+.+ .+.+.++++.+++. ...++++..||| |||||++||++-
T Consensus 82 ~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSG-----GEKKRVAIAGVI 152 (277)
T ss_pred EEecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 9999853111 12233333321 111222 34578899999996 456888899999 999999999874
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=190.43 Aligned_cols=135 Identities=24% Similarity=0.337 Sum_probs=104.1
Q ss_pred CCeEEEEeeEEEcC-CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
.++|.++|+++.|+ +.+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 45899999999995 2457999999999999999999999999999999999999999999987652 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++...+ ...+..+++.. ..... ....+.++++.+++. ...++++.+||| ||+||++||++-
T Consensus 85 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~laral 157 (271)
T PRK13632 85 IGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSG-----GQKQRVAIASVL 157 (271)
T ss_pred eEEEEeCHHHhc-CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCH-----HHHHHHHHHHHH
Confidence 899999852111 12233333321 11111 133577899999996 456788899999 999999999874
No 141
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=187.99 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=102.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------- 118 (198)
+|.++|+++.|+ .+.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 588999999995 467999999999999999999999999999999999999999999988642
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
..++|++|++.... ..+..+++.. ...+. ....+.++++.+++. ...++++..||| ||||||+|
T Consensus 81 ~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSG-----GQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHH
Confidence 14899999864222 2233333321 11111 235678899999996 456788899999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++.
T Consensus 153 aral 156 (242)
T PRK11124 153 ARAL 156 (242)
T ss_pred HHHH
Confidence 9874
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.3e-27 Score=191.07 Aligned_cols=133 Identities=26% Similarity=0.335 Sum_probs=105.3
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..+|.++|+++.|+ +..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45799999999995 467999999999999999999999999999999999999999999998753 148
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh---C-------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC---F-------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
+|++|+..... ..+..+++... . .......+.++++.+++. ...++++..||| ||+|||+||
T Consensus 84 ~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----Gq~qrv~la 155 (265)
T PRK10253 84 GLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSG-----GQRQRAWIA 155 (265)
T ss_pred EEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCh-----HHHHHHHHH
Confidence 99999864322 23334433211 0 011234678899999996 456888999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 156 ral 158 (265)
T PRK10253 156 MVL 158 (265)
T ss_pred HHH
Confidence 874
No 143
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=4.7e-26 Score=208.72 Aligned_cols=137 Identities=27% Similarity=0.378 Sum_probs=108.7
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|++ .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 46999999999964 356999999999999999999999999999999999999999999998863 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +..+..+++....+..+++++.++++.+++.+... +..+. -.|.+||||||||++|||+-
T Consensus 534 ~~v~q~~~l---f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~-~~g~~LSgGq~qri~lARal 608 (694)
T TIGR01846 534 GVVLQENVL---FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG-EKGANLSGGQRQRIAIARAL 608 (694)
T ss_pred eEEccCCee---hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEec-CCCCCCCHHHHHHHHHHHHH
Confidence 999999642 23466666654444567888889999988864221 22222 23667888999999999874
No 144
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3.2e-28 Score=187.55 Aligned_cols=133 Identities=22% Similarity=0.327 Sum_probs=105.9
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
..+.++++.++| +.+.+++++||+|.+||+++|+|||||||||.+.+++|+.+|++|+|.+++. ..|
T Consensus 3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 368899999999 4677999999999999999999999999999999999999999999998752 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHH---hCC---C--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMR---CFP---G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~---~~~---~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
||+||++.-+..++ +.++++. ... . ..+.++.++|+.|.+. ...+.+...||| |||+|+.||++
T Consensus 82 gYLpQE~SIFr~Lt--V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSG-----GERRR~EIARa 153 (243)
T COG1137 82 GYLPQEASIFRKLT--VEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSG-----GERRRVEIARA 153 (243)
T ss_pred ccccccchHhhcCc--HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCccccccc-----chHHHHHHHHH
Confidence 99999965333333 2222221 111 1 1234567999999997 577889999999 99999999987
Q ss_pred cc
Q 029133 194 RD 195 (198)
Q Consensus 194 ~~ 195 (198)
..
T Consensus 154 La 155 (243)
T COG1137 154 LA 155 (243)
T ss_pred Hh
Confidence 53
No 145
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.94 E-value=3.6e-26 Score=204.44 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=102.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++|+++.|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 36999999999965557999999999999999999999999999999999999999999998763 2589
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. ++. +...+ ....+++.+.++++.+++.... ..+-..+.|.+||||||||++||++-
T Consensus 401 ~v~q~~~l-f~~--ti~~n----~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 401 AVFTDFHL-FDQ--LLGPE----GKPANPALVEKWLERLKMAHKL-ELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred EEecChhH-HHH--hhccc----cCchHHHHHHHHHHHcCCchhh-hccccCCCCCCCCHHHHHHHHHHHHH
Confidence 99998632 211 11111 1234567788899999886432 22222235677888999999999874
No 146
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.1e-26 Score=190.00 Aligned_cols=133 Identities=26% Similarity=0.332 Sum_probs=102.1
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
.|.++++++.|++. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 47899999999632 36999999999999999999999999999999999999999999988652
Q ss_pred ---eeEEEeccccC-CCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 119 ---VRIAVFSQHHV-DGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 ---~~i~~~~q~~~-~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
..++|++|++. ..+. .+..+++.. ..... ..+.+.++++.+++.....++++.+||| ||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----G~~qrv 154 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSG-----GQMRRV 154 (280)
T ss_pred HHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH-----HHHHHH
Confidence 13899999852 1122 243333321 11111 1345678899999964456788899999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++.
T Consensus 155 ~la~al 160 (280)
T PRK13649 155 AIAGIL 160 (280)
T ss_pred HHHHHH
Confidence 999864
No 147
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-26 Score=189.42 Aligned_cols=132 Identities=26% Similarity=0.410 Sum_probs=103.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------eeE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 121 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~i 121 (198)
+|.++|+++.|++...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 4789999999964456999999999999999999999999999999999999999999987652 138
Q ss_pred EEeccccC-CCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHV-DGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~-~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++. ..+.. ++.+++.. ..... ..+.+.++++.+++. ...++++.+||| ||+||++||++-
T Consensus 81 ~~v~q~~~~~~~~~--tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~-----Gq~qrv~laral 152 (275)
T PRK13639 81 GIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSG-----GQKKRVAIAGIL 152 (275)
T ss_pred EEEeeChhhhhccc--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99999852 11222 33333321 11111 235678899999996 466888999999 999999999864
No 148
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=1.7e-26 Score=189.63 Aligned_cols=135 Identities=20% Similarity=0.305 Sum_probs=104.0
Q ss_pred eEEEEeeEEEcCC--------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------
Q 029133 55 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------- 118 (198)
+|.++||++.|++ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 6899999999963 467999999999999999999999999999999999999999999987653
Q ss_pred ------eeEEEeccccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 119 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++...+....+...++. ..... .....+.++++.+++.....++++..||| ||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~-----Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG-----GQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh-----HHH
Confidence 2499999986322222223332221 11111 12346789999999964456788889999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 158 qrl~laral 166 (268)
T PRK10419 158 QRVCLARAL 166 (268)
T ss_pred HHHHHHHHH
Confidence 999999874
No 149
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=197.39 Aligned_cols=117 Identities=23% Similarity=0.274 Sum_probs=91.8
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeEEEeccccCCCCCC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDL 134 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~ 134 (198)
.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++.....
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~- 120 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH- 120 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC-
Confidence 4799999999999999999999999999999999999999999998652 259999998643222
Q ss_pred CCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 135 SSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 135 ~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+..+++.. ...+. ..+++.++|+.+++. ...++++.+||| ||||||+||++.
T Consensus 121 -~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSg-----Gq~QRv~LArAL 179 (400)
T PRK10070 121 -MTVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSG-----GMRQRVGLARAL 179 (400)
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCH-----HHHHHHHHHHHH
Confidence 233333221 11111 235678899999997 456888999999 999999999874
No 150
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=190.29 Aligned_cols=134 Identities=26% Similarity=0.365 Sum_probs=104.9
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
++|++++|++.|++ .+++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 57999999999953 356999999999999999999999999999999999999999999998763 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. .....++.+++... ..... .+++.++++.+++. ...++++..||| ||+|||+||++-
T Consensus 84 ~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~-----G~~qrv~laral 155 (279)
T PRK13635 84 GMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSG-----GQKQRVAIAGVL 155 (279)
T ss_pred EEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCH-----HHHHHHHHHHHH
Confidence 999998521 11123444443211 11111 35678899999997 456788899999 999999999864
No 151
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=2.3e-26 Score=180.32 Aligned_cols=131 Identities=22% Similarity=0.263 Sum_probs=101.1
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------eeEEEeccc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH 127 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------~~i~~~~q~ 127 (198)
+|.++++++.|+ .+.+++ +||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|+
T Consensus 1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 478999999995 455665 99999999999999999999999999999999999999998763 237899987
Q ss_pred cCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 128 HVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
... ....++.+++.... .....+.+.++++.+++. +..++++..||| ||+||++||++.-
T Consensus 79 ~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~~rl~la~al~ 139 (195)
T PRK13541 79 LGL--KLEMTVFENLKFWSEIYNSAETLYAAIHYFKLH-DLLDEKCYSLSS-----GMQKIVAIARLIA 139 (195)
T ss_pred cCC--CccCCHHHHHHHHHHhcccHHHHHHHHHHcCCH-hhhccChhhCCH-----HHHHHHHHHHHHh
Confidence 532 22334444332111 111345678889999996 456788899999 9999999998754
No 152
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.2e-27 Score=187.96 Aligned_cols=132 Identities=27% Similarity=0.348 Sum_probs=105.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
+++++++|+++| ++..+++||||+|++||+++||||||||||||+++|+|+++|++|+|.+.+. ..|
T Consensus 3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578899999999 4677999999999999999999999999999999999999999999998763 247
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh------------CC------CCcHHHHHHHHHhcCCCcccccCccccccCCCCCCh
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC------------FP------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G 183 (198)
+.-+|.......+ ++++++.-. .+ ....++++++|+.++|. +.++.+..+||+ |
T Consensus 82 ~RTFQ~~rlF~~l--TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~Lsy-----G 153 (250)
T COG0411 82 ARTFQITRLFPGL--TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSY-----G 153 (250)
T ss_pred eeecccccccCCC--cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCCh-----h
Confidence 7778875433333 333332211 00 11246778999999997 577999999999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|++|+.||++-
T Consensus 154 ~qR~LEIArAL 164 (250)
T COG0411 154 QQRRLEIARAL 164 (250)
T ss_pred HhHHHHHHHHH
Confidence 99999999874
No 153
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.3e-27 Score=201.04 Aligned_cols=137 Identities=27% Similarity=0.416 Sum_probs=110.0
Q ss_pred eEEEEeeEEEcCCCC-cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 55 IISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
.++++||+|+|++.. ++|+|+||++.+||++||+|++|||||||+.+|+|.++|++|+|..++. ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 899999999997644 6999999999999999999999999999999999999999999998762 1477
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCc-----cccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+++|.... +..+..+++.-..++.+++++.++++.+++.+-..+.| .-..-|..|||||+||++|||..
T Consensus 416 vl~Qr~hl---F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 416 VLTQRVHL---FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred hhccchHH---HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 78876421 23455666665666778899999999999974333332 23344667888999999999863
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=1.2e-26 Score=188.67 Aligned_cols=130 Identities=23% Similarity=0.297 Sum_probs=101.3
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------------
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------- 118 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------------- 118 (198)
|+++||++.|+ ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999995 467999999999999999999999999999999999999999999987642
Q ss_pred -------eeEEEeccccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChH
Q 029133 119 -------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.... ..+..+++.. .... ...+.+.++++.+++. ...++.+.+||| ||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSG-----GQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCH-----HH
Confidence 24899999854322 2333333321 0111 1235678899999996 456788889999 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++-
T Consensus 152 ~qrv~laral 161 (252)
T TIGR03005 152 QQRVAIARAL 161 (252)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 155
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=1e-26 Score=193.89 Aligned_cols=124 Identities=27% Similarity=0.354 Sum_probs=95.3
Q ss_pred EcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEeccccCCCCC
Q 029133 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGLD 133 (198)
Q Consensus 64 ~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~q~~~~~~~ 133 (198)
.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++.....
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 563 467999999999999999999999999999999999999999999998762 248999998643222
Q ss_pred CCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++......+.....+. ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la~al 139 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSG-----GMRRRLDIAASL 139 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCH-----HHHHHHHHHHHH
Confidence 3322222221111121 235678999999997 456889999999 999999999864
No 156
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=2.7e-26 Score=186.14 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=101.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-----~G~i~~~~~----------- 118 (198)
+|+++|+++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999995 457999999999999999999999999999999999999998 999987642
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHH
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .+..+++.. ...+ ...+.+.++++.+++.. ...++++.+||| ||||
T Consensus 80 ~~~~i~~v~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----G~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNP-FP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG-----GQQQ 151 (247)
T ss_pred HHhheEEEecCccc-CC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCH-----HHHH
Confidence 248999998542 22 344333321 1111 12356788999999962 345778888999 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 152 rv~laral 159 (247)
T TIGR00972 152 RLCIARAL 159 (247)
T ss_pred HHHHHHHH
Confidence 99999874
No 157
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=1.3e-25 Score=200.82 Aligned_cols=137 Identities=22% Similarity=0.286 Sum_probs=104.0
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..++++|+++.|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 46999999999964 357999999999999999999999999999999999999999999998763 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. + ..+..+++....+..+++++.++++..++.+... +..+ .-.|.+||||||||++||++-
T Consensus 395 ~~v~q~~~l-f--~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~-~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 395 GYLPQDVEL-F--PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVI-GPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred EEecCCccc-c--cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccccc-CCCcCCCCHHHHHHHHHHHHH
Confidence 999999642 2 2356666653333356677777777777642211 1111 123556777999999999874
No 158
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=186.95 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=101.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~----------- 118 (198)
+|+++++++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 689999999995 46799999999999999999999999999999999999974 7999987652
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHHH
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
..++|++|++.... ..++.+++.. .... ...+.+.++++.+++.. ...++++.+||| ||+||
T Consensus 82 ~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----G~~qr 154 (250)
T PRK14247 82 RRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSG-----GQQQR 154 (250)
T ss_pred ccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCH-----HHHHH
Confidence 25899999864222 2333333321 1111 11356788999999853 235678888888 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 155 v~laral 161 (250)
T PRK14247 155 LCIARAL 161 (250)
T ss_pred HHHHHHH
Confidence 9999874
No 159
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.8e-26 Score=189.39 Aligned_cols=134 Identities=20% Similarity=0.275 Sum_probs=103.7
Q ss_pred CeEEEEeeEEEcCC-----CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------- 118 (198)
++|+++|+++.|++ .+++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 246999999999999999999999999999999999999999999987642
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
..++|++|++...+. ..+..+.+.. ...+. ..+.+.++++.+++. ...++++.+||| ||+|||+|
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~-----G~~qrv~l 155 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSG-----GQKQRVAI 155 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCH-----HHHHHHHH
Confidence 148999998531111 1223222211 11111 245678899999996 566888999999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 156 aral 159 (280)
T PRK13633 156 AGIL 159 (280)
T ss_pred HHHH
Confidence 9864
No 160
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=1.8e-26 Score=186.41 Aligned_cols=131 Identities=22% Similarity=0.295 Sum_probs=98.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCeEEecCc------------eeE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~G~i~~~~~------------~~i 121 (198)
|+++|+++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|++ +|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 46899999995 467999999999999999999999999999999999995 799999988652 127
Q ss_pred EEeccccCCCCCCCCcHHHHHH---HhCC--------C--CcHHHHHHHHHhcCCCcccccCccc-cccCCCCCChHHHH
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMM---RCFP--------G--VPEQKLRAHLGSFGVTGNLALQPMY-TLSGFGCSGGTNSR 187 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~---~~~~--------~--~~~~~~~~~L~~~~l~~~~~~~~~~-~LSG~~ls~Ge~~r 187 (198)
+|++|++...... +..+++. .... . ...+.+.++++.+++.....++++. .||| |||||
T Consensus 80 ~~v~q~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~-----G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGV--SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSG-----GEKKR 152 (243)
T ss_pred EeeeccccccCCc--CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCH-----HHHHH
Confidence 8999986432222 2222211 1100 0 1135678899999996445566776 4888 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 153 l~la~al 159 (243)
T TIGR01978 153 NEILQMA 159 (243)
T ss_pred HHHHHHH
Confidence 9999864
No 161
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.94 E-value=3.2e-26 Score=182.70 Aligned_cols=131 Identities=24% Similarity=0.271 Sum_probs=102.0
Q ss_pred EEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------
Q 029133 56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (198)
Q Consensus 56 i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------- 118 (198)
|+++|+++.|++. ..+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999532 56999999999999999999999999999999999999999999988652
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHH--H-hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMM--R-CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..++|++|++...... +..+++. . ..... ....+.++++.+++. ...++++.+||+ ||+||++||
T Consensus 82 ~~i~~~~q~~~~~~~~--t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~-----G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFL--TARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSG-----GQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCC--CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCH-----HHHHHHHHH
Confidence 2489999986432222 3322221 1 11111 234678899999996 456788899999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 154 ral 156 (220)
T TIGR02982 154 RAL 156 (220)
T ss_pred HHH
Confidence 864
No 162
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=2e-26 Score=187.85 Aligned_cols=131 Identities=26% Similarity=0.346 Sum_probs=103.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEe
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~ 124 (198)
|.++|+++.|+ +..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 67899999995 567999999999999999999999999999999999999999999998662 148999
Q ss_pred ccccCCCCCCCCcHHHHHHHh-------C--C-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMRC-------F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~-------~--~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++... ...++.+++... . . ....+.+.++++.+++. +..++++..||| ||+|||+||++-
T Consensus 81 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTA--VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSG-----GERQRVHVARAL 152 (256)
T ss_pred cccCccC--CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCH-----HHHHHHHHHHHH
Confidence 9986322 223444433211 0 0 11234678899999996 566888899999 999999999874
Q ss_pred c
Q 029133 195 D 195 (198)
Q Consensus 195 ~ 195 (198)
-
T Consensus 153 ~ 153 (256)
T TIGR03873 153 A 153 (256)
T ss_pred h
Confidence 3
No 163
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.2e-26 Score=185.49 Aligned_cols=133 Identities=19% Similarity=0.301 Sum_probs=101.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~--------- 118 (198)
+|+|+++|+++.|+ .+.+|+++||+|++|++++|+|||||||||||++|+|++. |++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 57899999999995 4579999999999999999999999999999999999974 68999987651
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .+..+++.. ...+ ...+++.++++.+++.. ...++++.+||| ||
T Consensus 83 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----Gq 154 (253)
T PRK14242 83 VELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG-----GQ 154 (253)
T ss_pred HHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH-----HH
Confidence 248999998632 22 244333321 1111 12456778899999853 234677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
||||+||++.
T Consensus 155 ~qrv~laral 164 (253)
T PRK14242 155 QQRLCIARAL 164 (253)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 164
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=2.1e-25 Score=200.98 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=105.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..++++|+++.|++..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 36999999999965457899999999999999999999999999999999999999999998763 2589
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----ccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----PMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. + ..+..+++....+..+++++.++++..++.+..... ..-.-.|.+||||||||++||++-
T Consensus 413 ~v~q~~~l-f--~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 413 TVFQDAGL-F--NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred EEccCCcc-C--cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 99999642 2 346666665443445677777888777765322111 111223566777999999999874
No 165
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=180.56 Aligned_cols=132 Identities=28% Similarity=0.389 Sum_probs=104.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+|+++|++++. .++.+++++||++++||.++|+||||||||||||.|+|.+.|++|++.+++. ..-+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 57899999999 4577999999999999999999999999999999999999999999998763 23688
Q ss_pred eccccCCCCCCCCcHHHHHHHhC----CC--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCF----PG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|+....|.++..+...+-+.. .. .+..-++.+|...++. .+..+...+||| ||+|||.||+.
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSG-----GEqQRVqlARv 149 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSG-----GEQQRVQLARV 149 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCc-----hHHHHHHHHHH
Confidence 99986555555544433332211 11 1223377899999997 466778889999 99999999975
No 166
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.5e-26 Score=188.40 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=102.1
Q ss_pred CeEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------
Q 029133 54 PIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------- 118 (198)
..|+++|+++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 458999999999543 24999999999999999999999999999999999999999999987542
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
..++|++|++...+ ...+..+++. ....+.. .+.+.++++.+++.....++++.+||| ||+||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~-----Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSG-----GQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhh-hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCH-----HHHHH
Confidence 14899999853211 1123333222 1111111 245678899999954456788899999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 159 v~laral 165 (289)
T PRK13645 159 VALAGII 165 (289)
T ss_pred HHHHHHH
Confidence 9999864
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.9e-26 Score=181.69 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=100.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|.++|+++.|+ +.. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 46899999995 333 3999999999999999999999999999999999999999998763 24899999
Q ss_pred ccCCCCCCCCcHHHHHHHhC----C--CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 127 HHVDGLDLSSNPLLYMMRCF----P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
++... ...++.+++.... . ...+.++.++++.+++. ...++++.+||| ||||||+||++.-
T Consensus 78 ~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~ia~al~ 144 (211)
T cd03298 78 ENNLF--AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSG-----GERQRVALARVLV 144 (211)
T ss_pred ccccC--CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCH-----HHHHHHHHHHHHh
Confidence 86432 2234444432111 0 12345688999999997 456788899999 9999999998753
No 168
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=9.8e-26 Score=219.93 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=108.5
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|+++ +++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+++. ..+
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 369999999999543 57999999999999999999999999999999999999999999998873 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+||++.. + ..+..+++... ...+++++.++++..++.+... +..+. -.|.+||||||||++|||+-
T Consensus 1313 ~iVpQdp~L-F--~gTIr~NL~~~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1313 SIIPQSPVL-F--SGTVRFNIDPF-SEHNDADLWEALERAHIKDVIDRNPFGLDAEVS-EGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred EEECCCCee-e--CccHHHHcCCC-CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceec-CCCCCCCHHHHHHHHHHHHH
Confidence 999999753 2 34666665432 2456788999999998864221 22222 35678899999999999973
No 169
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.94 E-value=7.9e-26 Score=184.17 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=102.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCCeEEecCc---------eeE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRI 121 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p----~~G~i~~~~~---------~~i 121 (198)
+|+++|+++.| + ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.+++. ..+
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 68999999999 3 5699999999999999999999999999999999999999 9999988653 249
Q ss_pred EEeccccCCCCCCCCcHHHHHH----HhCCCCcHHHHHHHHHhcCCCcc--cccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMM----RCFPGVPEQKLRAHLGSFGVTGN--LALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~L~~~~l~~~--~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++...+....+...... .......++++.++++.+++... ..++++.+||| ||+|||+||++-
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~-----Gq~qrv~laral 155 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSG-----GMLQRMMIALAL 155 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCH-----HHHHHHHHHHHH
Confidence 9999985312222222222211 11112234678899999999642 35778889999 999999999864
No 170
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.6e-26 Score=188.31 Aligned_cols=135 Identities=26% Similarity=0.340 Sum_probs=104.4
Q ss_pred CCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CeEEecCc----------
Q 029133 53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRSAK---------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~---G~i~~~~~---------- 118 (198)
..+|+++|+++.|++ ..++|+++||+|.+|++++|+||||||||||+++|+|+++|++ |+|.+++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 457999999999953 2469999999999999999999999999999999999999998 89987652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..++|++|++...+ ...++.+++.. ...... .+++.++++.+++. ...++++..||| ||+|||+||
T Consensus 83 ~~~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~-----G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSG-----GQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCH-----HHHHHHHHH
Confidence 24899999863111 12233333321 111222 24578899999997 456888999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 156 ral 158 (282)
T PRK13640 156 GIL 158 (282)
T ss_pred HHH
Confidence 874
No 171
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.6e-26 Score=203.72 Aligned_cols=132 Identities=21% Similarity=0.334 Sum_probs=102.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (198)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++......
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCC
Confidence 478999999995 5679999999999999999999999999999999999999999999988766799999985332222
Q ss_pred CCcHHHHHHH----------------hC---------------------C-CCcHHHHHHHHHhcCCCcccccCcccccc
Q 029133 135 SSNPLLYMMR----------------CF---------------------P-GVPEQKLRAHLGSFGVTGNLALQPMYTLS 176 (198)
Q Consensus 135 ~~~~~~~~~~----------------~~---------------------~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LS 176 (198)
+ +.+++.. .. . ...+.++.++|+.+++.....++++.+||
T Consensus 80 t--v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 80 T--VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred c--HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 2 2111110 00 0 01235677899999996434456889999
Q ss_pred CCCCCChHHHHHhhcccc
Q 029133 177 GFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 177 G~~ls~Ge~~rv~la~~~ 194 (198)
| ||||||+||++-
T Consensus 158 g-----Gq~qrv~lA~aL 170 (530)
T PRK15064 158 P-----GWKLRVLLAQAL 170 (530)
T ss_pred H-----HHHHHHHHHHHH
Confidence 9 999999999864
No 172
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=3.3e-26 Score=187.11 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=103.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecCc------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK------------ 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~~------------ 118 (198)
++|+++||++.|+ +..+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5799999999995 567999999999999999999999999999999999999986 499987652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCccccccCCCC
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~l 180 (198)
..++|++|++.... ..+..+++.... ......++.++++.+++. ...++++.+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~--- 155 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSG--- 155 (262)
T ss_pred HHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCH---
Confidence 13899999864222 234444332110 111245678999999996 456888999999
Q ss_pred CChHHHHHhhcccc
Q 029133 181 SGGTNSRPCFVPRR 194 (198)
Q Consensus 181 s~Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 156 --G~~qrv~laral 167 (262)
T PRK09984 156 --GQQQRVAIARAL 167 (262)
T ss_pred --HHHHHHHHHHHH
Confidence 999999999864
No 173
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=4.9e-26 Score=203.94 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=105.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.++|+++||++.|++++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....++|++|++....
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 45899999999995246799999999999999999999999999999999999999999999877678999999864322
Q ss_pred CCCCcHHHHHHH-------------------hCCC-----------------------CcHHHHHHHHHhcCCCcccccC
Q 029133 133 DLSSNPLLYMMR-------------------CFPG-----------------------VPEQKLRAHLGSFGVTGNLALQ 170 (198)
Q Consensus 133 ~~~~~~~~~~~~-------------------~~~~-----------------------~~~~~~~~~L~~~~l~~~~~~~ 170 (198)
.. ++.+++.. .... ..+.++.++++.+++. . .++
T Consensus 84 ~~--tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~ 159 (556)
T PRK11819 84 EK--TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDA 159 (556)
T ss_pred CC--cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccC
Confidence 22 22222110 0000 0134677889999995 3 578
Q ss_pred ccccccCCCCCChHHHHHhhccccc
Q 029133 171 PMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 171 ~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
++.+||| ||||||+||++.-
T Consensus 160 ~~~~LSg-----Gqkqrv~la~al~ 179 (556)
T PRK11819 160 KVTKLSG-----GERRRVALCRLLL 179 (556)
T ss_pred chhhcCH-----HHHHHHHHHHHHh
Confidence 8999999 9999999998753
No 174
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=2e-26 Score=204.12 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=104.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++|+++.|+ +..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 567999999999999999999999999999999999999999999988652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh---C---CCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC---F---PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
+|++|++... ...++.+++... . ... ..+++.++++.+++. +..++++.+||| ||||||+||
T Consensus 82 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la 153 (501)
T PRK10762 82 GIIHQELNLI--PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSI-----GEQQMVEIA 153 (501)
T ss_pred EEEEcchhcc--CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCH-----HHHHHHHHH
Confidence 9999985322 223444433211 0 011 134678899999997 456888999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 154 ~al 156 (501)
T PRK10762 154 KVL 156 (501)
T ss_pred HHH
Confidence 874
No 175
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.1e-26 Score=192.11 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCCeEEecCce--------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAKV-------- 119 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~----p~~G~i~~~~~~-------- 119 (198)
+|+++||++.|+.. ..+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999542 359999999999999999999999999999999999997 489999987631
Q ss_pred -------eEEEeccccCCCCCCCCcHH----HHHHHhC--C-CCcHHHHHHHHHhcCCCc--ccccCccccccCCCCCCh
Q 029133 120 -------RIAVFSQHHVDGLDLSSNPL----LYMMRCF--P-GVPEQKLRAHLGSFGVTG--NLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 120 -------~i~~~~q~~~~~~~~~~~~~----~~~~~~~--~-~~~~~~~~~~L~~~~l~~--~~~~~~~~~LSG~~ls~G 183 (198)
.++|++|++...++...+.. ..+.... . ....+++.++|+.+++.. ...++++.+||| |
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg-----G 157 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG-----G 157 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH-----H
Confidence 48999998643233332322 2221111 1 122466889999999963 345678899999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+|||+||++.
T Consensus 158 q~QRv~iArAL 168 (326)
T PRK11022 158 MSQRVMIAMAI 168 (326)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 176
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.2e-26 Score=188.95 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=100.5
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeE
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI 121 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i 121 (198)
.++++++.|+ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678999994 567999999999999999999999999999999999999999999987652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++...... ++.+++.. ...+ ...+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 105 ~~v~q~~~~~~~~--tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----Gq~qrv~lAral 175 (269)
T cd03294 105 SMVFQSFALLPHR--TVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSG-----GMQQRVGLARAL 175 (269)
T ss_pred EEEecCcccCCCC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCH-----HHHHHHHHHHHH
Confidence 9999986432222 33333221 1111 1235678899999996 456788899999 999999999874
No 177
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.7e-25 Score=218.99 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=108.7
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|.++ +++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+++. ..|
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 469999999999643 47999999999999999999999999999999999999999999998873 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+||++.. + ..+..+++... ...+++++.++++..++.+... +..+. -.|.+||||||||+||||+-
T Consensus 1316 siVpQdp~L-F--~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130 1316 GIIPQAPVL-F--SGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVS-EAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred EEECCCCcc-c--cccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCcccc-CCCCCCCHHHHHHHHHHHHH
Confidence 999999753 2 34666665432 2456788999999998853221 22222 25678999999999999973
No 178
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=2.8e-26 Score=173.09 Aligned_cols=135 Identities=24% Similarity=0.234 Sum_probs=104.1
Q ss_pred CeEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 54 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
.+|+++++++..+. ...+|++|+|.|.+||.++||||+||||||||-+++|+..|++|+|++.+.
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 36888888888753 246999999999999999999999999999999999999999999987542
Q ss_pred ---eeEEEeccccCCCCCCCC--cHHHHHHHhC--CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 ---VRIAVFSQHHVDGLDLSS--NPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
..+|||+|.+....+++. |+...+.... .......++.+|..+|+.. ..+.++.+||| ||+|||+||
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-Rl~HyP~qLSG-----GEQQRVAiA 158 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-RLTHYPAQLSG-----GEQQRVALA 158 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-ccccCccccCc-----hHHHHHHHH
Confidence 359999997543223321 2211111111 2234566889999999974 56778899999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 159 RAf 161 (228)
T COG4181 159 RAF 161 (228)
T ss_pred HHh
Confidence 875
No 179
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.5e-26 Score=186.70 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=103.9
Q ss_pred CCCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc-------
Q 029133 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 118 (198)
Q Consensus 51 ~~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~------- 118 (198)
.+.++|+++++++.|+ ...+|+++||+|.+|++++|+|||||||||||++|+|+++ |++|+|.+++.
T Consensus 35 ~~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 35 SGETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 3567899999999995 4679999999999999999999999999999999999987 68999987642
Q ss_pred ------eeEEEeccccCCCCCCCCcHHHHHHH--hC---CCCcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMR--CF---PGVPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +.. +..+++.. .. .....+++.++++.+++.. ...++++.+||| ||
T Consensus 114 ~~~~~~~~i~~v~q~~~l-~~~--tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSg-----Ge 185 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNP-FPK--SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG-----GQ 185 (285)
T ss_pred chHhhhccEEEEecCCcc-CcC--CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCH-----HH
Confidence 248999998642 222 44333321 11 1112456788999998852 245677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
||||+||++.
T Consensus 186 ~qrv~LAraL 195 (285)
T PRK14254 186 QQRLCIARAI 195 (285)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 180
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.9e-26 Score=184.04 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=101.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|.++++++.|+ .+.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4799999999995 467999999999999999999999999999999999999999999987652 148
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh--CCC--CcHHHHHHHHHhc-CCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPG--VPEQKLRAHLGSF-GVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~L~~~-~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+|++|+... + ...++.+++... ... .....+.++++.+ ++. +..++++.+||| ||+|||+||++--
T Consensus 83 ~~~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~-----G~~qrl~la~al~ 153 (237)
T PRK11614 83 AIVPEGRRV-F-SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSG-----GEQQMLAIGRALM 153 (237)
T ss_pred EEeccCccc-C-CCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCH-----HHHHHHHHHHHHH
Confidence 999998542 2 122444433221 111 1234566777877 464 345678888999 9999999998753
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.1e-26 Score=185.29 Aligned_cols=135 Identities=26% Similarity=0.311 Sum_probs=103.1
Q ss_pred CCeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
.++|.++++++.|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 4579999999999643 45899999999999999999999999999999999999999999998762 14
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++...+. ..+...++.. ..... ..+.+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 85 i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~laral 157 (269)
T PRK13648 85 IGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSG-----GQKQRVAIAGVL 157 (269)
T ss_pred eeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCH-----HHHHHHHHHHHH
Confidence 8999998631111 1222222211 11111 234677899999996 456788888999 999999999874
No 182
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-26 Score=192.44 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=103.2
Q ss_pred CeEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCCeEEecCc--------
Q 029133 54 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAK-------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~----p~~G~i~~~~~-------- 118 (198)
++|+++||++.|+. ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 36899999999942 2468999999999999999999999999999999999996 58999998652
Q ss_pred -------eeEEEeccccCCCCCCCCcHHHHHHH----h-CCC-------CcHHHHHHHHHhcCCCc--ccccCccccccC
Q 029133 119 -------VRIAVFSQHHVDGLDLSSNPLLYMMR----C-FPG-------VPEQKLRAHLGSFGVTG--NLALQPMYTLSG 177 (198)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~~----~-~~~-------~~~~~~~~~L~~~~l~~--~~~~~~~~~LSG 177 (198)
..|+|++|++...++...++...+.. . ... ...+++.++|+.++|.. +..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 14999999864333333333222211 1 000 12356789999999974 234678899999
Q ss_pred CCCCChHHHHHhhcccc
Q 029133 178 FGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 178 ~~ls~Ge~~rv~la~~~ 194 (198)
||+|||+||++-
T Consensus 162 -----G~~QRv~iArAL 173 (330)
T PRK15093 162 -----GECQKVMIAIAL 173 (330)
T ss_pred -----HHHHHHHHHHHH
Confidence 999999999874
No 183
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.3e-26 Score=206.60 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=106.5
Q ss_pred CCeEEEEeeEEEcCC----------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----
Q 029133 53 PPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~----------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---- 118 (198)
.++|+++||++.|+. ...+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999951 136899999999999999999999999999999999999999999998652
Q ss_pred ----------eeEEEeccccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCC
Q 029133 119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCS 181 (198)
Q Consensus 119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls 181 (198)
..|+|++|++...+....++..++.. .... ...+++.++|+.++|.....++++.+|||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg---- 466 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG---- 466 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH----
Confidence 14899999863223333344333221 1111 12356789999999964456889999999
Q ss_pred ChHHHHHhhcccc
Q 029133 182 GGTNSRPCFVPRR 194 (198)
Q Consensus 182 ~Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 467 -GqrQRv~iAraL 478 (623)
T PRK10261 467 -GQRQRICIARAL 478 (623)
T ss_pred -HHHHHHHHHHHH
Confidence 999999999874
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=3.8e-26 Score=194.34 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=96.1
Q ss_pred EcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeEEEecccc
Q 029133 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHH 128 (198)
Q Consensus 64 ~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i~~~~q~~ 128 (198)
+| +.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 56 3567999999999999999999999999999999999999999999998762 2599999986
Q ss_pred CCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
...... ++.+++.. ...+. ..+++.++|+.++|. ...++++.+||| ||||||+||++.
T Consensus 81 ~l~~~~--TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSG-----Gq~QRV~lARAL 144 (363)
T TIGR01186 81 ALFPHM--TILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSG-----GMQQRVGLARAL 144 (363)
T ss_pred cCCCCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 432222 33333221 11122 245678999999996 467889999999 999999999874
No 185
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=9.2e-26 Score=179.81 Aligned_cols=131 Identities=26% Similarity=0.347 Sum_probs=100.1
Q ss_pred eEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
.|+++++++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 37899999999542 56999999999999999999999999999999999999999999998763 2489
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCc-----------cccccCCCCCChHHHHHhhc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----------MYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSG~~ls~Ge~~rv~la 191 (198)
|++|++.. +. .+..+++...........+.++++.+++.. ..++. +.+||| ||+|||+||
T Consensus 82 ~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~LSg-----G~~qrl~la 152 (220)
T cd03245 82 YVPQDVTL-FY--GTLRDNITLGAPLADDERILRAAELAGVTD-FVNKHPNGLDLQIGERGRGLSG-----GQRQAVALA 152 (220)
T ss_pred EeCCCCcc-cc--chHHHHhhcCCCCCCHHHHHHHHHHcCcHH-HHHhccccccceecCCCccCCH-----HHHHHHHHH
Confidence 99998642 22 255554432222223456778888888863 33433 346666 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 153 ~al 155 (220)
T cd03245 153 RAL 155 (220)
T ss_pred HHH
Confidence 864
No 186
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.7e-26 Score=203.66 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=104.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++|+++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 5799999999995 567999999999999999999999999999999999999999999988652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh------CCC-------CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC------FPG-------VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
+|++|++.... ..++.+++... ..+ ...+++.++++.+++. ...++++.+||| ||||||
T Consensus 83 ~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----G~~qrv 154 (510)
T PRK09700 83 GIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSI-----SHKQML 154 (510)
T ss_pred EEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCH-----HHHHHH
Confidence 99999854222 22333333211 001 1135678899999997 456889999999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++.
T Consensus 155 ~ia~al 160 (510)
T PRK09700 155 EIAKTL 160 (510)
T ss_pred HHHHHH
Confidence 999874
No 187
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=4.7e-26 Score=187.36 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=102.4
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--------CCeEEecCc--------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--------SGTVFRSAK-------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~--------~G~i~~~~~-------- 118 (198)
+|+++|+++.|+ ++.+|+++||+|.+|++++|+|||||||||||++|+|+++|+ +|+|.+++.
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 478999999995 567999999999999999999999999999999999999998 999998652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|+....+. .+..+++... .. ....+.+.++++.+++. ...++++.+||| ||+
T Consensus 80 ~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~ 151 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSG-----GEL 151 (272)
T ss_pred HHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCH-----HHH
Confidence 137899998532222 3444433211 00 11234577899999996 456788899999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 152 qrv~laral 160 (272)
T PRK13547 152 ARVQFARVL 160 (272)
T ss_pred HHHHHHHHH
Confidence 999999864
No 188
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5e-26 Score=182.93 Aligned_cols=129 Identities=25% Similarity=0.364 Sum_probs=101.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++||++.|+ .. ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~l~~~~l~~~~~-~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYH-HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEEC-Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 478999999995 33 24999999999999999999999999999999999999999998753 2489999
Q ss_pred cccCCCCCCCCcHHHHHHHhC-C-----CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCF-P-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++... ...+..+++.... . ....+++.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 78 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 144 (232)
T PRK10771 78 QENNLF--SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSG-----GQRQRVALARCL 144 (232)
T ss_pred cccccc--cCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCH-----HHHHHHHHHHHH
Confidence 985322 2234444432110 1 11245688999999996 467889999999 999999999864
No 189
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.2e-26 Score=178.99 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=101.4
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-----CeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~-----G~i~~~~~--------- 118 (198)
.+.+++++|+++|+ .+.+|++||++|+++.++||+||+|||||||||++..+....+ |+|.+++.
T Consensus 5 ~~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 45789999999994 6779999999999999999999999999999999999998876 88877652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHHh---C---CCCcHHHHHHHHHhcCCCcccc---cCccccccCCCCCChHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---F---PGVPEQKLRAHLGSFGVTGNLA---LQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~---~~~~~~LSG~~ls~Ge~ 185 (198)
.++|+|+|.+. .++ .+.++++... + ...-++.++..|....|.++.. +++...||| ||+
T Consensus 84 ~~lRr~vGMVFQkPn-PFp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSG-----GQQ 155 (253)
T COG1117 84 VELRRRVGMVFQKPN-PFP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG-----GQQ 155 (253)
T ss_pred HHHHHHheeeccCCC-CCC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCCh-----hHH
Confidence 36999999874 233 4555554422 1 1123466778888888865332 344444555 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
||+||||+-
T Consensus 156 QRLcIARal 164 (253)
T COG1117 156 QRLCIARAL 164 (253)
T ss_pred HHHHHHHHH
Confidence 999999874
No 190
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.6e-26 Score=181.91 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=101.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|.++++++.|+ .+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999995 467999999999999999999999999999999999999999999988652 35899999
Q ss_pred ccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++...... +..+++. ....+ ...+.+.++++.+++. ...++.+..||+ ||+|||+||++-
T Consensus 80 ~~~~~~~~--t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~-----G~~qrl~laral 145 (232)
T cd03300 80 NYALFPHL--TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSG-----GQQQRVAIARAL 145 (232)
T ss_pred ccccCCCC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 86432222 3333322 11111 1245677899999997 456788888999 999999999874
No 191
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=1.1e-25 Score=177.67 Aligned_cols=129 Identities=26% Similarity=0.325 Sum_probs=96.2
Q ss_pred EEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC
Q 029133 56 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (198)
Q Consensus 56 i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (198)
|+++||++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l- 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWI- 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchh-
Confidence 4689999999643 3699999999999999999999999999999999999999999999887 79999998642
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCccccccCCCCCChHHHHHhhccccc
Q 029133 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+ ..+..+++.... ......+.+++..+++... ..+.++..||+ ||+|||+||++.-
T Consensus 78 ~--~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~-----G~~qrv~laral~ 143 (204)
T cd03250 78 Q--NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSG-----GQKQRISLARAVY 143 (204)
T ss_pred c--cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCH-----HHHHHHHHHHHHh
Confidence 2 335555544321 1223344455555554321 12344566666 9999999998753
No 192
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.6e-26 Score=192.31 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=100.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------e
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 119 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~ 119 (198)
||++ ||++.|+ +. .+ |+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4677 9999995 33 33 899999999999999999999999999999999999999987541 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.++|++|++.... ..+..+++.........+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 77 ~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----Gq~qRvalaraL 143 (352)
T PRK11144 77 RIGYVFQDARLFP--HYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSG-----GEKQRVAIGRAL 143 (352)
T ss_pred CEEEEcCCcccCC--CCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCH-----HHHHHHHHHHHH
Confidence 4899999864322 234444433221223456788999999997 456888999999 999999999874
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=184.70 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=102.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
.+.|+++||++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++| ++|+|.+++.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45899999999995 46799999999999999999999999999999999999975 8999987651
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCCh
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~G 183 (198)
..++|++|++.. +. .++.+++.. ...+ ...+++.++++.+++.. ...++++.+||| |
T Consensus 96 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----G 167 (267)
T PRK14235 96 VELRARVGMVFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG-----G 167 (267)
T ss_pred HHHhhceEEEecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH-----H
Confidence 248999998542 22 244443321 1111 11355778999999953 234667888888 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+|||+||++.
T Consensus 168 q~qrv~laral 178 (267)
T PRK14235 168 QQQRLCIARAI 178 (267)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 194
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.2e-26 Score=183.68 Aligned_cols=133 Identities=22% Similarity=0.245 Sum_probs=101.4
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
.++|+++++++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 45899999999995 46799999999999999999999999999999999999997 5899987542
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .++.+++.. .... ...+.+.++++.+++.. ...++++.+||| ||
T Consensus 84 ~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg-----G~ 155 (254)
T PRK14273 84 LELRRKIGMVFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG-----GQ 155 (254)
T ss_pred HHHhhceEEEeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH-----HH
Confidence 248999998642 22 344443321 1111 12356778888888731 235677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
||||+||++.
T Consensus 156 ~qrv~laral 165 (254)
T PRK14273 156 QQRLCIARTL 165 (254)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.7e-26 Score=185.45 Aligned_cols=134 Identities=23% Similarity=0.279 Sum_probs=102.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~--------- 118 (198)
.++|+++||++.|+ ...+|+|+||+|++|++++|+|||||||||||++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 46899999999995 4679999999999999999999999999999999999987 68999987652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCC---CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .++.+++.. ...+ ..++.+.++++.+++.. ...++++.+||| ||||
T Consensus 90 ~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----G~~q 161 (269)
T PRK14259 90 VEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSG-----GQQQ 161 (269)
T ss_pred HHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCH-----HHHH
Confidence 148999998642 22 244443321 1111 12355677888887742 345677888888 9999
Q ss_pred HHhhccccc
Q 029133 187 RPCFVPRRD 195 (198)
Q Consensus 187 rv~la~~~~ 195 (198)
||+||++.-
T Consensus 162 rl~laral~ 170 (269)
T PRK14259 162 RLCIARTIA 170 (269)
T ss_pred HHHHHHHHh
Confidence 999998753
No 196
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=9.3e-26 Score=179.16 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=100.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
++++||++.|+ . ++.|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 46899999995 2 568999999999999999999999999999999999999999998653 24899999
Q ss_pred ccCCCCCCCCcHHHHHHHh---C---CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMMRC---F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++... ...+..+++... . ....++++.++++.+++. +..++++.+||| ||+|||+||++-
T Consensus 78 ~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~laral 143 (213)
T TIGR01277 78 ENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSG-----GQRQRVALARCL 143 (213)
T ss_pred cCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCH-----HHHHHHHHHHHH
Confidence 86432 223443433211 1 112345678899999996 456888899999 999999999863
No 197
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=183.79 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=100.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~---------- 118 (198)
.+|+++|+++.|+ +..+|+++||+|++|++++|+|||||||||||++|+|+++| ++|+|.+++.
T Consensus 3 ~~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 3 KRIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred ccEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 3689999999995 45799999999999999999999999999999999999974 7999988652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|+..... ..++.+++.. .... ...+.+.++++.+++.. ...++++.+||| ||+
T Consensus 82 ~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG-----GQQ 154 (258)
T ss_pred HHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH-----HHH
Confidence 24899999853222 2233333321 1111 11345678899998842 345677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 155 qrv~laral 163 (258)
T PRK14241 155 QRLCIARAI 163 (258)
T ss_pred HHHHHHHHH
Confidence 999999874
No 198
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.9e-26 Score=204.95 Aligned_cols=133 Identities=21% Similarity=0.271 Sum_probs=103.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (198)
+|.++||++.|+ ++.+|+|+||+|.+|+++||+||||||||||||+|+|++.|++|+|.+++...++|++|+... ...
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-CCC
Confidence 478999999995 567999999999999999999999999999999999999999999999887789999986421 111
Q ss_pred CCc--HHH------H----------------H---HHh---CC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCCh
Q 029133 135 SSN--PLL------Y----------------M---MRC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 135 ~~~--~~~------~----------------~---~~~---~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G 183 (198)
+.. ... . + ... .. ...+.++.++|..+||.....++++.+||| |
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSg-----G 153 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSG-----G 153 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCH-----H
Confidence 110 000 0 0 000 00 112457889999999964456889999999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|||||+||++-
T Consensus 154 erqRv~LA~aL 164 (638)
T PRK10636 154 WRMRLNLAQAL 164 (638)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 199
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=6e-26 Score=198.40 Aligned_cols=138 Identities=22% Similarity=0.299 Sum_probs=113.9
Q ss_pred CCCeEEEEeeEEEcCC------C----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---
Q 029133 52 GPPIISFSDASFGYPG------G----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~------~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--- 118 (198)
..++++++||++.|.. . ..+++||||+|.+||++||||+||||||||.|+|+|+++|++|+|.+++.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4578999999999962 1 35799999999999999999999999999999999999999999998653
Q ss_pred ----------eeEEEeccccCCCCCCCCcHHHHHHHh---CC----CCcHHHHHHHHHhcCCCcccccCccccccCCCCC
Q 029133 119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCS 181 (198)
Q Consensus 119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls 181 (198)
.++-+++|++...++...++.+.+... +. ....+++.++|+.++++....++++.+|||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSG---- 432 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSG---- 432 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCc----
Confidence 257788998877777777765544321 11 122456889999999998788999999999
Q ss_pred ChHHHHHhhcccc
Q 029133 182 GGTNSRPCFVPRR 194 (198)
Q Consensus 182 ~Ge~~rv~la~~~ 194 (198)
|||||||||++.
T Consensus 433 -GQrQRvaIARAL 444 (539)
T COG1123 433 -GQRQRVAIARAL 444 (539)
T ss_pred -chhHHHHHHHHH
Confidence 999999999875
No 200
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.9e-26 Score=183.91 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=100.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~---------- 118 (198)
++|+++||++.|+ ..++|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4789999999995 46799999999999999999999999999999999999987 4999987642
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.... ..+..+++.. .... .....+.++++.+++.. ...++++.+||| ||
T Consensus 82 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG-----GQ 154 (253)
T ss_pred HHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH-----HH
Confidence 24899999854222 2233333221 1111 11245778899998842 235677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
||||+||++-
T Consensus 155 ~qrv~laral 164 (253)
T PRK14267 155 RQRLVIARAL 164 (253)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 201
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=2.9e-25 Score=216.92 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=108.7
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|+++ .++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|.+++. ..+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 469999999999643 46999999999999999999999999999999999999999999999873 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc------ccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+||++.. + ..+..+++... ...+++++.++++.+++.+.. .+..+. -.|.+||||||||+||||+-
T Consensus 1363 ~iVpQdp~L-F--~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1363 TIIPQDPVL-F--SGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECA-EGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred eEECCCCcc-c--CccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceec-CCCCcCCHHHHHHHHHHHHH
Confidence 999999753 2 34566655322 246788899999999885322 122333 25678899999999999973
No 202
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.1e-26 Score=202.37 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=104.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCeEEecCc------------e
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------V 119 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p--~~G~i~~~~~------------~ 119 (198)
++|+++|+++.|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++| ++|+|.+++. .
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5799999999995 56799999999999999999999999999999999999996 8999988652 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHh---C--C--C--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRC---F--P--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~---~--~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
.++|++|++.... ..++.+++... . . . ...+++.++++.+++. ...++++.+||| ||||||+|
T Consensus 83 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gqkqrv~l 154 (506)
T PRK13549 83 GIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGL-----GQQQLVEI 154 (506)
T ss_pred CeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCH-----HHHHHHHH
Confidence 4899999863222 23444433211 0 0 1 1135678999999996 456889999999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 155 a~al 158 (506)
T PRK13549 155 AKAL 158 (506)
T ss_pred HHHH
Confidence 9874
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9e-26 Score=199.97 Aligned_cols=132 Identities=23% Similarity=0.326 Sum_probs=104.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++|+++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5799999999995 467999999999999999999999999999999999999999999988652 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh----CCC-----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC----FPG-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
+|++|++.... ..++.+++... ... ...+++.++++.+++. ...++++.+||| ||||||+||+
T Consensus 82 ~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~qrv~lar 153 (501)
T PRK11288 82 AIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSI-----GQRQMVEIAK 153 (501)
T ss_pred EEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCH-----HHHHHHHHHH
Confidence 99999853222 23343333211 011 1135678899999996 445788899999 9999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+-
T Consensus 154 al 155 (501)
T PRK11288 154 AL 155 (501)
T ss_pred HH
Confidence 64
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=183.24 Aligned_cols=134 Identities=21% Similarity=0.311 Sum_probs=101.7
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc--------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~-------- 118 (198)
+.++|+++|+++.|+ +..+|+++||+|.+|++++|+|+|||||||||++|+|+++ |++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 456899999999995 5679999999999999999999999999999999999864 78999987641
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCCh
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~G 183 (198)
..++|++|++.. +. .+..+++... ... ..++.+.+++..+++.. ...++++.+||| |
T Consensus 97 ~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----G 168 (268)
T PRK14248 97 VVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG-----G 168 (268)
T ss_pred HHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH-----H
Confidence 248999998642 22 2444433211 111 11345677888888842 234677888888 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+|||+||++.
T Consensus 169 q~qrl~laral 179 (268)
T PRK14248 169 QQQRLCIARTL 179 (268)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 205
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.4e-25 Score=181.69 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=101.3
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
.++|+++++++.|+ .+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 46899999999995 56799999999999999999999999999999999999985 8999987542
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .+..+++.. ...+.. .+.+.++++.+++.. ...++++..||| ||+
T Consensus 89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----G~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSG-----GQQ 160 (258)
T ss_pred HHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH-----HHH
Confidence 138999998642 22 233333221 111111 245778999998842 334677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 161 qrv~laral 169 (258)
T PRK14268 161 QRLCIARTL 169 (258)
T ss_pred HHHHHHHHH
Confidence 999999874
No 206
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-25 Score=179.69 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=97.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
.|+++|+++.|++.+.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3789999999954456999999999999999999999999999999999999999999988752 24899
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhhccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|++.. +. .+..+++..........++.+++..+++.. ...++++..||| ||||||+||++
T Consensus 82 ~~q~~~~-~~--~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~-----G~~~rv~la~a 153 (229)
T cd03254 82 VLQDTFL-FS--GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQ-----GERQLLAIARA 153 (229)
T ss_pred ecCCchh-hh--hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCH-----HHHHHHHHHHH
Confidence 9998532 22 244444432222223344555555555431 122345677777 99999999986
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 154 l 154 (229)
T cd03254 154 M 154 (229)
T ss_pred H
Confidence 4
No 207
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=2e-25 Score=216.86 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=110.4
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------------------
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----------------------- 108 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p----------------------- 108 (198)
..|+++||+|.|++ +.++|+|+||+|++|+++|||||||||||||+++|+|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 35999999999963 34799999999999999999999999999999999999999
Q ss_pred -------------------------------CCCeEEecCc-----------eeEEEeccccCCCCCCCCcHHHHHHHhC
Q 029133 109 -------------------------------SSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCF 146 (198)
Q Consensus 109 -------------------------------~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 146 (198)
++|+|.+++. ..|+||+|++.. +..+..+++....
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L---F~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML---FNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc---ccccHHHHHhcCC
Confidence 6999998763 259999999753 3456777776554
Q ss_pred CCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 147 PGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 147 ~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+..+++++.++++..++.+... +..++ -.|.+||||||||++|||+-
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARAL 1373 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHH
Confidence 5567888999999988853221 22333 34677888999999999974
No 208
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=184.44 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=103.0
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
++|+++|+++.|++. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 378999999999632 35899999999999999999999999999999999999999999988652 24
Q ss_pred EEEeccccC-CCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 121 IAVFSQHHV-DGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|++|++. .... .++.+++.. ...+.. .+++.++++.+++. ...++++.+||| ||+|||+||++
T Consensus 83 i~~v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~lAra 154 (277)
T PRK13642 83 IGMVFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSG-----GQKQRVAVAGI 154 (277)
T ss_pred eEEEEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCH-----HHHHHHHHHHH
Confidence 899999852 1222 233333321 111111 24567899999996 456788899999 99999999986
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 155 L 155 (277)
T PRK13642 155 I 155 (277)
T ss_pred H
Confidence 4
No 209
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=6.1e-25 Score=197.34 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=106.1
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|.++++++.|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 35899999999964 357999999999999999999999999999999999999999999998763 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. + ..+..+++....+..+++++.++++..++.+... +..++ -.|.+||||||||++||++-
T Consensus 392 ~~v~q~~~l-f--~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 392 AVVSQTPFL-F--SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG-ERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred EEEccCCee-c--cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceec-CCCCcCCHHHHHHHHHHHHH
Confidence 999998642 2 3466666654334456778888888888753221 11222 23566777999999999864
No 210
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-25 Score=180.59 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=100.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|.++++++.|+ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|++++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46899999995 33 899999999999999999999999999999999999999999988752 25899999
Q ss_pred ccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+....... +..+++. ..... ...+.+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 79 ~~~~~~~~--t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~laral 144 (235)
T cd03299 79 NYALFPHM--TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSG-----GEQQRVAIARAL 144 (235)
T ss_pred cCccCCCc--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCH-----HHHHHHHHHHHH
Confidence 85422222 3333222 11111 1234577899999996 456788899999 999999999864
No 211
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.93 E-value=7.8e-26 Score=176.56 Aligned_cols=120 Identities=30% Similarity=0.455 Sum_probs=92.2
Q ss_pred CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------eeEEEeccccC-CCC
Q 029133 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIAVFSQHHV-DGL 132 (198)
Q Consensus 67 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~i~~~~q~~~-~~~ 132 (198)
+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++. ..+
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3467999999999999999999999999999999999999999999987642 14899999852 122
Q ss_pred CCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
. .+..+++.. ..... ..+.+.++++.+++. ...++++.+||| ||+|||+||++.
T Consensus 83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 142 (190)
T TIGR01166 83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSG-----GEKKRVAIAGAV 142 (190)
T ss_pred c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 2 233333321 11111 134678899999996 456888899999 999999999874
No 212
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.9e-27 Score=179.73 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=103.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~ 124 (198)
|+++.+++++|+.-..+++||||+++.|++++|+|||||||||+||+|++++.|++|.|.+++- ..||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 5789999999965334899999999999999999999999999999999999999999998752 247777
Q ss_pred ccccCCCCCCCCcHHH-HHHHh---CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLL-YMMRC---FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+.....+-.++..... ++... .....+.++.++.+.|++. +..++.+..+|- |+||||+||++-
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~-----G~kqkV~iARAl 148 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFST-----GMKQKVAIARAL 148 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhch-----hhHHHHHHHHHH
Confidence 7443222223322222 12111 1233467888999999996 567899999999 999999999873
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=1.5e-25 Score=180.50 Aligned_cols=131 Identities=24% Similarity=0.375 Sum_probs=94.3
Q ss_pred EEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
|+++|+++.|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999953 357999999999999999999999999999999999999999999998762 24899
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhhccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|++.. ++ .++.+++...........+.+.++.+++.. ...++++.+||| ||||||+||++
T Consensus 81 ~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSg-----G~~qrv~lara 152 (237)
T cd03252 81 VLQENVL-FN--RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG-----GQRQRIAIARA 152 (237)
T ss_pred EcCCchh-cc--chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCH-----HHHHHHHHHHH
Confidence 9998632 22 344444432111222333333333333211 223556777888 99999999986
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 153 l 153 (237)
T cd03252 153 L 153 (237)
T ss_pred H
Confidence 4
No 214
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=183.59 Aligned_cols=133 Identities=22% Similarity=0.344 Sum_probs=101.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~--------- 118 (198)
..+|+++|+++.|+ ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999995 4579999999999999999999999999999999999986 58999987641
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .+..+++.. ..... ..+++.++++.+++.. ...++++.+||| ||
T Consensus 90 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSG-----GQ 161 (260)
T ss_pred HHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCH-----HH
Confidence 248999998642 22 344443321 11111 1356778999999842 335677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++-
T Consensus 162 ~qrv~laral 171 (260)
T PRK10744 162 QQRLCIARGI 171 (260)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 215
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.5e-25 Score=182.52 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=101.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~--------- 118 (198)
.++|.++|+++.|+ ++++|+|+||+|.+||+++|+|||||||||||++|+|+++ |++|+|.+++.
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46899999999995 5679999999999999999999999999999999999996 58999987642
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .++.+++... ..+ ..+..+.++++.+++.. ...++++.+||| ||
T Consensus 97 ~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~-----G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSG-----GQ 168 (267)
T ss_pred HHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCH-----HH
Confidence 248999998532 22 2444443221 111 12345678899998852 245677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++-
T Consensus 169 ~qrl~laral 178 (267)
T PRK14237 169 QQRLCIARAI 178 (267)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 216
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=203.78 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=104.8
Q ss_pred CCCeEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------
Q 029133 52 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------- 118 (198)
..++|+++||++.|+. ..++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 3568999999999952 246999999999999999999999999999999999999999999976431
Q ss_pred ---------------eeEEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc--ccccCcccc
Q 029133 119 ---------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG--NLALQPMYT 174 (198)
Q Consensus 119 ---------------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~--~~~~~~~~~ 174 (198)
..|+|++|++...+....++..++.. ...+. ..+++.++|+.+++.. ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 24899999862112222333332221 11111 2356788999999963 246788999
Q ss_pred ccCCCCCChHHHHHhhcccc
Q 029133 175 LSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 175 LSG~~ls~Ge~~rv~la~~~ 194 (198)
||| ||||||+||++-
T Consensus 169 LSg-----Gq~QRv~iA~AL 183 (623)
T PRK10261 169 LSG-----GMRQRVMIAMAL 183 (623)
T ss_pred CCH-----HHHHHHHHHHHH
Confidence 999 999999999874
No 217
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4.4e-26 Score=180.46 Aligned_cols=132 Identities=22% Similarity=0.416 Sum_probs=107.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------eeEEEeccc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH 127 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------~~i~~~~q~ 127 (198)
++++++|+++| +++.+++|+||++++|++++++|||||||||++|+|.|++.|++|+|.|++. .+|||+|.+
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 58999999999 5678999999999999999999999999999999999999999999999874 369999998
Q ss_pred cCCCCCCCCcHHHHHHHhCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 128 HVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
...+..++..+...+.....+.. +..+..+|+++++.. ...+++.+||- |.+|++.+.++
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~-~~~~kIk~LSK-----GnqQKIQfisa 144 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG-KKTKKIKELSK-----GNQQKIQFISA 144 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc-cccchHHHhhh-----hhhHHHHHHHH
Confidence 65444343322222233333443 456778999999975 56789999999 99999998654
No 218
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=189.93 Aligned_cols=138 Identities=21% Similarity=0.283 Sum_probs=107.3
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
-.+.++++++.-++ .+++++++||++.+||.++||||+|||||||.|+|.|..+|++|.|+.++. ..|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 47899999987765 458999999999999999999999999999999999999999999998762 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc-----cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA-----LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
||+||+... +..++.+++.+.....+.+.+-++....+..+-.. +...-.-.|..||||||||++||++.
T Consensus 413 GYLPQdVeL---F~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 413 GYLPQDVEL---FDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred CcCccccee---cCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 999999642 35677778777665666666666666666532111 12222345666888999999999874
No 219
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=1.7e-25 Score=171.41 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=86.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (198)
|+++++++.|++.+.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|++.. . .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~-~--~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL-P--L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-c--c
Confidence 468999999954457999999999999999999999999999999999999999999999887789999998632 1 2
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+..+++... ++.+||| ||+||++||++-
T Consensus 78 ~tv~~nl~~~-------------------------~~~~LS~-----G~~~rv~laral 106 (166)
T cd03223 78 GTLREQLIYP-------------------------WDDVLSG-----GEQQRLAFARLL 106 (166)
T ss_pred ccHHHHhhcc-------------------------CCCCCCH-----HHHHHHHHHHHH
Confidence 3444433210 3466777 999999999864
No 220
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=181.35 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=101.4
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCeEEecCc-----------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-----------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~---p~~G~i~~~~~-----------~~ 120 (198)
+++++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 578999999995 4679999999999999999999999999999999999974 79999988652 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh---CC-----CCcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHHHHh
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC---FP-----GVPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
++|++|++.. +. .++.+++... .. ....+++.++++.+++.. ...++++..||| ||+|||+
T Consensus 81 i~~~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~~qrv~ 152 (246)
T PRK14269 81 VGMVFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG-----GQQQRLC 152 (246)
T ss_pred EEEEecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCH-----HHHHHHH
Confidence 8999998642 22 3444443211 11 112345778999999953 234667788888 9999999
Q ss_pred hccccc
Q 029133 190 FVPRRD 195 (198)
Q Consensus 190 la~~~~ 195 (198)
||++.-
T Consensus 153 laral~ 158 (246)
T PRK14269 153 IARALA 158 (246)
T ss_pred HHHHHh
Confidence 998753
No 221
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-26 Score=174.65 Aligned_cols=134 Identities=23% Similarity=0.401 Sum_probs=102.1
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCcee----------EEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----------IAVF 124 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~----------i~~~ 124 (198)
++..++|+... ++..+|.++||++.+||.+.|.||||||||||||+|+|+.+|++|+|++++... +-|+
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 46678888887 467899999999999999999999999999999999999999999999875321 1122
Q ss_pred ccccCCCCCCCCcHHHH--HHHh-CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccccC
Q 029133 125 SQHHVDGLDLSSNPLLY--MMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRDSH 197 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~~~ 197 (198)
.-.+ .+....+.+++ ++.. +...+...+.++++.++|. ...+.|+.+||- |||+||+||++--|+
T Consensus 81 GH~~--giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~~~LSA-----GQqRRvAlArL~ls~ 148 (209)
T COG4133 81 GHQP--GIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVGQLSA-----GQQRRVALARLWLSP 148 (209)
T ss_pred hccc--cccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccchhhcch-----hHHHHHHHHHHHcCC
Confidence 2111 22222333333 3322 2224678899999999997 567899999999 999999999986554
No 222
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=8.5e-27 Score=175.36 Aligned_cols=129 Identities=20% Similarity=0.341 Sum_probs=101.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEe
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~ 124 (198)
++++++.+.- ++..+|+++||++.+||+++|+||+|||||||+|+++.++.|++|++.+.+. ..|+|+
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 3445555444 3567999999999999999999999999999999999999999999998763 248899
Q ss_pred ccccCCCCCCCCcHHHHH----HHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 125 SQHHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.|.+.. + ..++.+++ .......+...+..+|.+|+++....++++.+||| ||+||++|++-
T Consensus 83 ~Q~paL-f--g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSG-----GE~QriAliR~ 147 (223)
T COG4619 83 AQTPAL-F--GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSG-----GEKQRIALIRN 147 (223)
T ss_pred HcCccc-c--ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccc-----hHHHHHHHHHH
Confidence 998643 2 22333322 11223456777889999999998888999999999 99999999863
No 223
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=2.3e-25 Score=187.82 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=104.0
Q ss_pred CCCeEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecCc-------
Q 029133 52 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~~------- 118 (198)
..++|+++||++.|.. ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999942 246899999999999999999999999999999999999996 999998763
Q ss_pred --------eeEEEeccccCCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCc--ccccCccccccCCCCC
Q 029133 119 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTG--NLALQPMYTLSGFGCS 181 (198)
Q Consensus 119 --------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSG~~ls 181 (198)
..|+|++|++...++...+....+. ..+.... .+++.++|+.+++.. ...++.+.+|||
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg---- 164 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG---- 164 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH----
Confidence 1599999996423333333322221 1111111 356788999999963 223567888888
Q ss_pred ChHHHHHhhcccc
Q 029133 182 GGTNSRPCFVPRR 194 (198)
Q Consensus 182 ~Ge~~rv~la~~~ 194 (198)
||+|||+||++-
T Consensus 165 -G~~QRv~IArAL 176 (330)
T PRK09473 165 -GMRQRVMIAMAL 176 (330)
T ss_pred -HHHHHHHHHHHH
Confidence 999999999874
No 224
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=180.45 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=101.3
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
.++|.++|+++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46899999999995 46799999999999999999999999999999999999875 7999987642
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHH--HhCCCC-----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .+..+++. ....+. ...++.++++.+++.. ...++++..||| ||
T Consensus 81 ~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~ 152 (251)
T PRK14270 81 VELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG-----GQ 152 (251)
T ss_pred HHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH-----HH
Confidence 248999998642 22 34333332 111111 1345678899998742 235677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++.
T Consensus 153 ~qrv~laral 162 (251)
T PRK14270 153 QQRLCIARTI 162 (251)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 225
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=198.21 Aligned_cols=131 Identities=31% Similarity=0.502 Sum_probs=107.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
.+|.++++++.| +++.+|+++||+|.+|+++||||+||||||||||+|+|...|++|+|......+++|++|++.....
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence 478999999999 5678999999999999999999999999999999999999999999999988999999999753322
Q ss_pred CCCcHHHHHHHh-----------------------------------C-CCCcHHHHHHHHHhcCCCcccccCccccccC
Q 029133 134 LSSNPLLYMMRC-----------------------------------F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177 (198)
Q Consensus 134 ~~~~~~~~~~~~-----------------------------------~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG 177 (198)
.++.+.+... . ....+.++..+|..++++.. ++++.+|||
T Consensus 81 --~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 81 --KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred --ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 1222211100 0 01124678889999999854 889999999
Q ss_pred CCCCChHHHHHhhcccc
Q 029133 178 FGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 178 ~~ls~Ge~~rv~la~~~ 194 (198)
|||.||+||++-
T Consensus 157 -----G~r~Rv~LA~aL 168 (530)
T COG0488 157 -----GWRRRVALARAL 168 (530)
T ss_pred -----HHHHHHHHHHHH
Confidence 999999999874
No 226
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.6e-25 Score=180.71 Aligned_cols=134 Identities=20% Similarity=0.287 Sum_probs=101.0
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCCeEEecCc--------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK-------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~--p---~~G~i~~~~~-------- 118 (198)
.+++|+++|+++.|+ .+.+|+++||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 9 ~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 456899999999995 4679999999999999999999999999999999999987 3 6899987542
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCccccccCCCCCCh
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~G 183 (198)
..++|++|++.. +.. +..+++.. ...+. . ..++.++++.+++.. +..++++.+||| |
T Consensus 88 ~~~~~~~i~~v~q~~~~-~~~--tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~-----G 159 (259)
T PRK14274 88 LVELRKNIGMVFQKGNP-FPQ--SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG-----G 159 (259)
T ss_pred HHHHhhceEEEecCCcc-ccc--CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH-----H
Confidence 248999998642 222 44443321 11111 1 245667888888853 234677888888 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+|||+||++.
T Consensus 160 q~qrv~laral 170 (259)
T PRK14274 160 QQQRLCIARAL 170 (259)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 227
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4e-25 Score=179.74 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=99.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~--p---~~G~i~~~~~---------- 118 (198)
..|+++|+++.|+ ...+|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+++.
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999995 4679999999999999999999999999999999999986 4 6899987652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH---hCC--C--CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP--G--VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~--~--~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.... ..+..+++.. ... . ...+.+.++++.+++.. ...++++.+||| ||+
T Consensus 82 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG-----GQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH-----HHH
Confidence 13899999854222 2233333221 111 1 12345778899999853 234567788888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 155 qrl~laral 163 (252)
T PRK14256 155 QRLCIARTI 163 (252)
T ss_pred HHHHHHHHH
Confidence 999999864
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=1e-25 Score=200.85 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=103.7
Q ss_pred CCeEEEEeeEEEcCC----------CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----
Q 029133 53 PPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~----------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---- 118 (198)
.++|+++|+++.|+. ++.+|+++||+|++|++++|+||||||||||+++|+|++ |++|+|++++.
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 468999999999951 356999999999999999999999999999999999998 58999998652
Q ss_pred ----------eeEEEeccccCCCCCCCCcHHHHHHH---hC----CC-CcHHHHHHHHHhcCCCcccccCccccccCCCC
Q 029133 119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF----PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGC 180 (198)
Q Consensus 119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~----~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~l 180 (198)
..++|++|++...+....++.+++.. .. .. ..++++.++|+.+++.....++++.+|||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--- 428 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG--- 428 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH---
Confidence 24899999852112222233333221 11 11 12356789999999964456889999999
Q ss_pred CChHHHHHhhcccc
Q 029133 181 SGGTNSRPCFVPRR 194 (198)
Q Consensus 181 s~Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 429 --G~~qrv~la~al 440 (529)
T PRK15134 429 --GQRQRIAIARAL 440 (529)
T ss_pred --HHHHHHHHHHHH
Confidence 999999999874
No 229
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=2.4e-25 Score=199.38 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=102.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
.+|+++|+++.|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....++|++|++.....
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence 47999999999952467999999999999999999999999999999999999999999998776789999998643222
Q ss_pred CCCcHHHHHHH-------------------hCCCC-----------------------cHHHHHHHHHhcCCCcccccCc
Q 029133 134 LSSNPLLYMMR-------------------CFPGV-----------------------PEQKLRAHLGSFGVTGNLALQP 171 (198)
Q Consensus 134 ~~~~~~~~~~~-------------------~~~~~-----------------------~~~~~~~~L~~~~l~~~~~~~~ 171 (198)
.+ +.+++.. ..... ...++.+++..+++. . .+++
T Consensus 83 ~t--v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~ 158 (552)
T TIGR03719 83 KT--VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDAD 158 (552)
T ss_pred Cc--HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccCc
Confidence 22 2222110 00001 013456678888885 2 4778
Q ss_pred cccccCCCCCChHHHHHhhcccc
Q 029133 172 MYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 172 ~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+.+||| ||||||+||++-
T Consensus 159 ~~~LSg-----Gqkqrv~la~al 176 (552)
T TIGR03719 159 VTKLSG-----GERRRVALCRLL 176 (552)
T ss_pred hhhcCH-----HHHHHHHHHHHH
Confidence 899999 999999999874
No 230
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=2.8e-25 Score=179.19 Aligned_cols=130 Identities=23% Similarity=0.259 Sum_probs=101.0
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q 126 (198)
|+++++++.|+ .+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 46899999995 467999999999999999999999999999999999999999999987642 24899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++..... .+..+++.. .... ...+.+.++++.+++. ...++++..||+ ||+||++||++-
T Consensus 80 ~~~~~~~--~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~-----G~~qrl~laral 145 (237)
T TIGR00968 80 HYALFKH--LTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSG-----GQRQRVALARAL 145 (237)
T ss_pred ChhhccC--CcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCH-----HHHHHHHHHHHH
Confidence 8642222 233332221 1111 1235677899999996 456788888999 999999999874
No 231
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-25 Score=179.95 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=99.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~----------- 118 (198)
.|.++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 588999999995 45799999999999999999999999999999999999763 6899987642
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHH
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .+..+++.. ...+ ..++.+.++++.+++.. ...++++.+||| ||+|
T Consensus 82 ~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----G~~q 153 (250)
T PRK14240 82 LRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG-----GQQQ 153 (250)
T ss_pred HhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH-----HHHH
Confidence 248999998532 22 233333321 1111 12456778888888742 234677888888 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 154 rv~laral 161 (250)
T PRK14240 154 RLCIARAL 161 (250)
T ss_pred HHHHHHHH
Confidence 99999864
No 232
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.2e-25 Score=180.00 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=100.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~----------- 118 (198)
+|+++|+++.|+ ...+|+++||+|++|++++|+|||||||||||++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 689999999995 46799999999999999999999999999999999999984 8999987651
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCcc---cccCccccccCCCCCChHHH
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTGN---LALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~~---~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .+..+++.. .... ..++.+.++++.+++... ..++++.+||| ||+|
T Consensus 82 ~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----Gq~q 153 (250)
T PRK14262 82 YRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG-----GQQQ 153 (250)
T ss_pred hhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH-----HHHH
Confidence 248999998642 22 343333321 1111 123446778888888532 35677888888 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
|++||++-
T Consensus 154 r~~la~al 161 (250)
T PRK14262 154 RLCIARAL 161 (250)
T ss_pred HHHHHHHH
Confidence 99999874
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=1.7e-25 Score=198.97 Aligned_cols=135 Identities=24% Similarity=0.267 Sum_probs=104.3
Q ss_pred CCeEEEEeeEEEcCC----CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec-Cc---------
Q 029133 53 PPIISFSDASFGYPG----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~-~~--------- 118 (198)
.++|+++|+++.|++ ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ +.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 468999999999942 2469999999999999999999999999999999999999999999984 21
Q ss_pred --------eeEEEeccccCCCCCCCCcHHHHHHH--h--CCC-CcHHHHHHHHHhcCCCc----ccccCccccccCCCCC
Q 029133 119 --------VRIAVFSQHHVDGLDLSSNPLLYMMR--C--FPG-VPEQKLRAHLGSFGVTG----NLALQPMYTLSGFGCS 181 (198)
Q Consensus 119 --------~~i~~~~q~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~~L~~~~l~~----~~~~~~~~~LSG~~ls 181 (198)
..++|++|++... ...++.+++.. . ... ..++++.++++.+++.. +..++++.+|||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg---- 430 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE---- 430 (520)
T ss_pred hhhHHHHhhhEEEEccCcccC--CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH----
Confidence 2489999985322 22344443321 1 111 12356778999999964 245789999999
Q ss_pred ChHHHHHhhcccc
Q 029133 182 GGTNSRPCFVPRR 194 (198)
Q Consensus 182 ~Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 431 -Gq~qrv~laral 442 (520)
T TIGR03269 431 -GERHRVALAQVL 442 (520)
T ss_pred -HHHHHHHHHHHH
Confidence 999999999864
No 234
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.2e-25 Score=182.27 Aligned_cols=134 Identities=19% Similarity=0.307 Sum_probs=99.6
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc--------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~-------- 118 (198)
+.++|.++|+++.|+ +..+|+|+||+|.+|++++|+|+|||||||||++|+|+++ |++|+|.+++.
T Consensus 21 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 456899999999995 4579999999999999999999999999999999999987 69999987652
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCccccccCCCCCCh
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~G 183 (198)
..++|++|++.. +. .+..+++.. ..... . +..+.++++.+++.. ...++++..||| |
T Consensus 100 ~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSg-----G 171 (271)
T PRK14238 100 VEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSG-----G 171 (271)
T ss_pred HHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCH-----H
Confidence 248999998642 22 244444321 11111 1 234566677775421 234667788888 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+|||+||++-
T Consensus 172 e~qrv~laraL 182 (271)
T PRK14238 172 QQQRLCIARCL 182 (271)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 235
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=1.6e-25 Score=198.37 Aligned_cols=133 Identities=14% Similarity=0.239 Sum_probs=102.1
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCeEEecCc------------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p--~~G~i~~~~~------------~~ 120 (198)
+|+++|+++.|+ +..+|+++||+|.+|++++|+|||||||||||++|+|+++| ++|+|.+++. ..
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999995 56799999999999999999999999999999999999987 7999988652 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--CC--C------CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FP--G------VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~--~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
++|++|++.... ..++.+++... .. . ...+++.++++.+++.....++++.+||| ||||||+|
T Consensus 80 i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----G~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGG-----GQQQLVEI 152 (500)
T ss_pred EEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCH-----HHHHHHHH
Confidence 899999864222 23333333211 00 0 11346788999999974333577899999 99999999
Q ss_pred ccccc
Q 029133 191 VPRRD 195 (198)
Q Consensus 191 a~~~~ 195 (198)
|++.-
T Consensus 153 A~al~ 157 (500)
T TIGR02633 153 AKALN 157 (500)
T ss_pred HHHHh
Confidence 98743
No 236
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=181.23 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC---------------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--------------- 117 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~--------------- 117 (198)
.++|.++++++.|+ ++.+|+|+||+|.+|++++|+|+|||||||||++|+|+++|++|+|.+++
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46899999999995 56799999999999999999999999999999999999999997765442
Q ss_pred --ceeEEEeccccCCCCCCCCcHHHHHHH--hCCC-Cc----HHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 118 --KVRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-VP----EQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 118 --~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
...++|++|++..... .+..+++.. ...+ .. ...+.++++.+++.. +..++++..||+ ||+
T Consensus 87 ~~~~~i~~~~q~~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~-----G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPH--LSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSG-----GQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCC--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCH-----HHH
Confidence 1248999998643222 233333221 1011 11 245678899999853 234567788888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
||++||++-
T Consensus 160 qrl~laral 168 (257)
T PRK14246 160 QRLTIARAL 168 (257)
T ss_pred HHHHHHHHH
Confidence 999999864
No 237
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=3.4e-25 Score=176.63 Aligned_cols=130 Identities=24% Similarity=0.349 Sum_probs=98.8
Q ss_pred EEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
|+++|+++.|++ .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999964 347999999999999999999999999999999999999999999988652 24899
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCccccccCCCCCChHHHHHhhccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|++. .+. .+..+++.. ......+++.++++.+++.... .++++..||| ||+|||+||++
T Consensus 83 ~~q~~~-l~~--~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~-----G~~qr~~lara 153 (221)
T cd03244 83 IPQDPV-LFS--GTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSV-----GQRQLLCLARA 153 (221)
T ss_pred ECCCCc-ccc--chHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCH-----HHHHHHHHHHH
Confidence 999864 222 344444431 1123455667777777775322 1245666777 99999999986
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 154 l 154 (221)
T cd03244 154 L 154 (221)
T ss_pred H
Confidence 4
No 238
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.7e-25 Score=182.65 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=101.5
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc--------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~-------- 118 (198)
+.++|.++++++.|+ +..+|+|+||+|.+|++++|+|||||||||||++|+|+.. |++|+|.+++.
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 456899999999995 4569999999999999999999999999999999999864 49999987642
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCCh
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~G 183 (198)
..++|++|++.. +. .++.+++.. ...+. ..+.+.++++.+++.. +..++++..||| |
T Consensus 115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg-----G 186 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG-----G 186 (286)
T ss_pred hHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH-----H
Confidence 248999998642 22 244444331 11111 1345678888888741 344677888888 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|+|||+||++-
T Consensus 187 q~qrv~LAraL 197 (286)
T PRK14275 187 QQQRLCVARTL 197 (286)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 239
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.93 E-value=3.2e-25 Score=177.46 Aligned_cols=133 Identities=22% Similarity=0.381 Sum_probs=100.7
Q ss_pred CCeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------e
Q 029133 53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~ 119 (198)
.++|+++++++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5689999999999642 36999999999999999999999999999999999999999999998752 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHhCCCCcH---------HHHHHHHHhc--CCCcccccCccccccCCCCCChHHHHH
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---------QKLRAHLGSF--GVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~L~~~--~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
.++|++|++.. +. .++.+++......... ..+.++++.+ ++. ...++++.+||| ||+|||
T Consensus 89 ~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSg-----G~~qrv 159 (226)
T cd03248 89 KVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSG-----GQKQRV 159 (226)
T ss_pred hEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCH-----HHHHHH
Confidence 48999998532 22 2444443311111111 1235667777 665 345677888888 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++.
T Consensus 160 ~laral 165 (226)
T cd03248 160 AIARAL 165 (226)
T ss_pred HHHHHH
Confidence 999874
No 240
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=198.56 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=103.9
Q ss_pred CCeEEEEeeEEEcC--CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCeEEecCc-----------
Q 029133 53 PPIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAK----------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-p~~G~i~~~~~----------- 118 (198)
.++|+++|+++.|+ ++..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 45899999999994 23568999999999999999999999999999999999999 59999998652
Q ss_pred -eeEEEeccccC-CCCCCCCcHHHHHHH----hCC-----C--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP-----G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~----~~~-----~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++. ..+....+..+++.. ... . ...+++.++++.+++.....++++.+||| |||
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----G~k 411 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSG-----GNQ 411 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCH-----HHH
Confidence 23899999852 111122233333211 111 1 12356789999999963456889999999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 412 qrv~lA~al 420 (506)
T PRK13549 412 QKAVLAKCL 420 (506)
T ss_pred HHHHHHHHH
Confidence 999999874
No 241
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=191.61 Aligned_cols=137 Identities=23% Similarity=0.365 Sum_probs=105.7
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
...|+++||+|.|+.++++|+||||++.+|+.+|||||+|+||||++|+|..+++..+|.|.+++. ..|
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 346999999999988899999999999999999999999999999999999999999999999874 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
|.||||.... ..+.+.++....+....+++.++.+..++.+... +..++ --|-+|||||||||+||+.
T Consensus 615 GVVPQDtvLF---NdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VG-ERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 615 GVVPQDTVLF---NDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG-ERGLKLSGGEKQRVAIART 688 (790)
T ss_pred CcccCcceee---cceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhh-hcccccCCcchhhHHHHHH
Confidence 9999996532 2344444444445566677777776666643221 11222 3355677799999999985
No 242
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.93 E-value=4.3e-25 Score=178.95 Aligned_cols=134 Identities=22% Similarity=0.273 Sum_probs=97.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCeEEecCc------------ee
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~G~i~~~~~------------~~ 120 (198)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+++. ..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 478999999995 467999999999999999999999999999999999995 699999988752 24
Q ss_pred EEEeccccCCCCCCCCcHHHH-----HHHhCC-C-C----cHHHHHHHHHhcCCCcccccCccc-cccCCCCCChHHHHH
Q 029133 121 IAVFSQHHVDGLDLSSNPLLY-----MMRCFP-G-V----PEQKLRAHLGSFGVTGNLALQPMY-TLSGFGCSGGTNSRP 188 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~-----~~~~~~-~-~----~~~~~~~~L~~~~l~~~~~~~~~~-~LSG~~ls~Ge~~rv 188 (198)
++|++|++......+...+.. +..... . . ..+.+.++++.+++.....++++. .||| ||||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~-----G~~qrv 154 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG-----GEKKRN 154 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCH-----HHHHHH
Confidence 899999854322222111111 000000 0 1 134567888999996445566664 6888 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 155 ~laral 160 (248)
T PRK09580 155 DILQMA 160 (248)
T ss_pred HHHHHH
Confidence 999864
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=2.6e-25 Score=198.20 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=102.9
Q ss_pred CCeEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc------
Q 029133 53 PPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------ 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~------ 118 (198)
.++|+++++++.|++ .+.+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 357999999999953 24799999999999999999999999999999999999987 7999987541
Q ss_pred ---------eeEEEeccccCCCCCCCCcHHHHHH---Hh---CCC-CcHHHHHHHHHhcCCCcc--cccCccccccCCCC
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RC---FPG-VPEQKLRAHLGSFGVTGN--LALQPMYTLSGFGC 180 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~---~~---~~~-~~~~~~~~~L~~~~l~~~--~~~~~~~~LSG~~l 180 (198)
..++|++|++...+....+....+. .. ... ...+++.++++.+++... ..++++.+|||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg--- 159 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG--- 159 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH---
Confidence 2489999985311221122222111 11 111 124667899999999631 34788999999
Q ss_pred CChHHHHHhhcccc
Q 029133 181 SGGTNSRPCFVPRR 194 (198)
Q Consensus 181 s~Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 160 --Ge~qrv~iAraL 171 (529)
T PRK15134 160 --GERQRVMIAMAL 171 (529)
T ss_pred --HHHHHHHHHHHH
Confidence 999999999874
No 244
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=6e-25 Score=178.56 Aligned_cols=134 Identities=22% Similarity=0.346 Sum_probs=99.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCeEEecCc------------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------ 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~--~~p~~G~i~~~~~------------ 118 (198)
+++|.+++|++.|+ ++.+|+++||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 45799999999995 45799999999999999999999999999999999998 5899999987642
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHH---Hh---C---CCCc----HHHHHHHHHhcCCCcccccCccc-cccCCCCCChH
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMM---RC---F---PGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGFGCSGGT 184 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~---~~---~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSG~~ls~Ge 184 (198)
..++|++|++...... +...++. .. . .... .+.+.++|+.+++.....++++. .||| ||
T Consensus 84 ~~~~~~~q~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg-----G~ 156 (252)
T CHL00131 84 LGIFLAFQYPIEIPGV--SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG-----GE 156 (252)
T ss_pred eeEEEEeccccccccc--cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH-----HH
Confidence 1377888875322112 2222211 10 0 0111 24567889999996444566776 4888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++-
T Consensus 157 ~qrv~la~al 166 (252)
T CHL00131 157 KKRNEILQMA 166 (252)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 245
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.9e-25 Score=177.38 Aligned_cols=131 Identities=25% Similarity=0.392 Sum_probs=95.5
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEe
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~ 124 (198)
|+++++++.|++...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 468999999954466999999999999999999999999999999999999999999998762 238999
Q ss_pred ccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++.. +. .+..+++...........+.+.+..+++.. ...++++..||| ||+|||+||++.
T Consensus 81 ~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~-----G~~~rl~la~aL 152 (236)
T cd03253 81 PQDTVL-FN--DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG-----GEKQRVAIARAI 152 (236)
T ss_pred CCCChh-hc--chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH-----HHHHHHHHHHHH
Confidence 998642 22 355555432222222333444455444421 122345567777 999999999864
No 246
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.92 E-value=9.7e-25 Score=195.53 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=99.6
Q ss_pred CeEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------
Q 029133 54 PIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------- 118 (198)
..|+++||++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 469999999999642 35899999999999999999999999999999999999999999998763
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCcccccc-CCCCCChHHHHHhhcccc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS-GFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LS-G~~ls~Ge~~rv~la~~~ 194 (198)
..++|++|++.. ++ .+...+. .+..+++++.++++.+++.+.. ...+..+. +.+||||||||++||++-
T Consensus 416 ~~i~~v~q~~~l-f~--~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~-~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 416 DLFSAIFADFHL-FD--DLIGPDE---GEHASLDNAQQYLQRLEIADKV-KIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhCcEEccChhh-hh--hhhhccc---ccchhHHHHHHHHHHcCCchhh-cccccccCCcccCCHHHHHHHHHHHHH
Confidence 248999998642 21 1221111 1234567788999999997432 22111111 134555999999999863
No 247
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.6e-25 Score=182.48 Aligned_cols=133 Identities=20% Similarity=0.355 Sum_probs=100.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
.++|.++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 56899999999995 56799999999999999999999999999999999999986 6999987652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCcc---cccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTGN---LALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~~l~~~---~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .+...++... ..... ...+.++++.+++... ..++.+.+||| ||+
T Consensus 98 ~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg-----Gq~ 169 (276)
T PRK14271 98 EFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG-----GQQ 169 (276)
T ss_pred HHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH-----HHH
Confidence 248999998642 22 2444333211 11112 2335678899988632 24567788888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 170 qrl~LAral 178 (276)
T PRK14271 170 QLLCLARTL 178 (276)
T ss_pred HHHHHHHHH
Confidence 999999874
No 248
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.4e-25 Score=170.41 Aligned_cols=132 Identities=23% Similarity=0.358 Sum_probs=103.3
Q ss_pred eEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEeccc
Q 029133 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQH 127 (198)
Q Consensus 55 ~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q~ 127 (198)
++.+.+++.+|++. ..+|+|+|++|.+||.++++||+||||||||++++|+..|..|+|.++++ ..-|.|+|+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 56788999999542 24999999999999999999999999999999999999999999998875 246889998
Q ss_pred cCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 128 HVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
... -...+..++... ...+.. .+.+.+.|..+|+.+ ..++.+.+||| ||||||.||++.
T Consensus 83 ~~L--lPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSG-----GmrQRvGiARAL 147 (259)
T COG4525 83 EAL--LPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSG-----GMRQRVGIARAL 147 (259)
T ss_pred Ccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecc-----hHHHHHHHHHHh
Confidence 532 122344443321 112322 355678899999974 45889999999 999999999874
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.5e-25 Score=176.74 Aligned_cols=123 Identities=23% Similarity=0.250 Sum_probs=94.8
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeEEEe
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF 124 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i~~~ 124 (198)
+|+++|++ ..+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 5 ~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 89999954 444 99999999 999999999999999999999999999999987652 148999
Q ss_pred ccccCCCCCCCCcHHHHHHH--h-CC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMR--C-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++.... ..+..+++.. . .. ...+.++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 81 ~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al 146 (214)
T cd03297 81 FQQYALFP--HLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSG-----GEKQRVALARAL 146 (214)
T ss_pred ecCCccCC--CCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCH-----HHHHHHHHHHHH
Confidence 99864322 2233333221 1 11 11245678899999996 456788899999 999999999864
No 250
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=1.9e-24 Score=211.19 Aligned_cols=136 Identities=19% Similarity=0.309 Sum_probs=109.1
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|+++ +++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+++. ..|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 369999999999654 45999999999999999999999999999999999999999999998863 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+||++.. + ..++.+++.. ....+++++.++++.+++.+... +..+. -.|.+||||||||+||||+-
T Consensus 1387 ~iVpQdp~L-F--~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vg-e~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1387 SMIPQDPVL-F--DGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVL-EGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred eEECCCCcc-c--cccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCccccccccc-CCcCcCCHHHHHHHHHHHHH
Confidence 999999753 2 3466666532 22456788999999999964221 22233 35678999999999999864
No 251
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.2e-25 Score=177.78 Aligned_cols=132 Identities=22% Similarity=0.329 Sum_probs=99.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CC---CCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QP---SSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p---~~G~i~~~~~---------- 118 (198)
++|+++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+. .| ++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4799999999995 467999999999999999999999999999999999985 46 5899987642
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .++.+++.. ...+ .....+.++++.+++.. ...++++.+||| |||
T Consensus 83 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~~ 154 (252)
T PRK14239 83 DLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG-----GQQ 154 (252)
T ss_pred hhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH-----HHH
Confidence 248999998642 22 244333321 1111 12345677888888742 234677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 155 qrv~laral 163 (252)
T PRK14239 155 QRVCIARVL 163 (252)
T ss_pred HHHHHHHHH
Confidence 999999864
No 252
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=1.1e-25 Score=171.32 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=99.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|.+.+|.+.|+. .--.++++|+.||++||+||+||||||||++|+|+..|.+|+|.+++. ..+++++
T Consensus 1 ~l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 3677899999942 235678999999999999999999999999999999999999998763 3588888
Q ss_pred cccCCCCCCCCcHHHHHHHh-C-----CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRC-F-----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
|++.....+ ++..++... . ....++.+..++..+|+. ...++.+.+||| ||||||+||+.
T Consensus 78 QEnNLFaHL--tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSG-----GqRQRvALARc 143 (231)
T COG3840 78 QENNLFAHL--TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSG-----GQRQRVALARC 143 (231)
T ss_pred hccccchhh--hhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCc-----hHHHHHHHHHH
Confidence 875432222 222222211 1 234578899999999997 466888999999 99999999985
No 253
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=4.2e-25 Score=178.04 Aligned_cols=131 Identities=25% Similarity=0.381 Sum_probs=93.7
Q ss_pred EEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 56 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 56 i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
|+++|+++.|++ +.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999953 246999999999999999999999999999999999999999999988762 2489
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhhcc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
|++|++.. +. .+..+++...........+.+.++.+++.. ...++++.+||| ||+|||+||+
T Consensus 81 ~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~-----G~~qrv~la~ 152 (238)
T cd03249 81 LVSQEPVL-FD--GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSG-----GQKQRIAIAR 152 (238)
T ss_pred EECCchhh-hh--hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCH-----HHHHHHHHHH
Confidence 99998532 22 244444332111122233334444333321 223456677888 9999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+.
T Consensus 153 al 154 (238)
T cd03249 153 AL 154 (238)
T ss_pred HH
Confidence 64
No 254
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=7.9e-25 Score=174.35 Aligned_cols=129 Identities=24% Similarity=0.295 Sum_probs=96.3
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeE
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI 121 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i 121 (198)
.+.++.+.|++...+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999975567999999999999999999999999999999999999999999988542 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCccccccCCCCCChHHHHHhhc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
+|++|++.. ++ .+..+++.... ......+.++++.+++.... .+.++..||| ||+|||+||
T Consensus 82 ~~~~q~~~~-~~--~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~-----G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWL-LN--ATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG-----GQRQRICVA 152 (218)
T ss_pred EEEcCCCcc-cc--ccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH-----HHHHHHHHH
Confidence 999998642 22 34555443221 12234455667777664211 2345667777 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++-
T Consensus 153 ral 155 (218)
T cd03290 153 RAL 155 (218)
T ss_pred HHH
Confidence 864
No 255
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=3.6e-25 Score=188.36 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=95.9
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeEEEe
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF 124 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i~~~ 124 (198)
||++.|+ +.. + ++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999995 443 4 999999999999999999999999999999999999999987542 248999
Q ss_pred ccccCCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++..... .++.+++... .. .....++.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 81 ~q~~~l~~~--~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSg-----GqkqRvalAraL 146 (354)
T TIGR02142 81 FQEARLFPH--LSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSG-----GEKQRVAIGRAL 146 (354)
T ss_pred ecCCccCCC--CcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 998643222 2333333211 11 11234678999999997 467889999999 999999999874
No 256
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.2e-25 Score=178.93 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=97.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-----~G~i~~~~~----------- 118 (198)
+|.++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 688999999995 567999999999999999999999999999999999999875 899987641
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHH
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.... ..+..+++.. ..... . .+.+.+++..+++.. ...++++.+||| ||+|
T Consensus 83 ~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSG-----GQQQ 155 (252)
T ss_pred hhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCH-----HHHH
Confidence 24899999864222 2233333321 11111 1 234555666676531 234677888888 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 156 rv~laral 163 (252)
T PRK14272 156 RLCIARAL 163 (252)
T ss_pred HHHHHHHH
Confidence 99999864
No 257
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.7e-25 Score=175.73 Aligned_cols=131 Identities=24% Similarity=0.422 Sum_probs=95.4
Q ss_pred EEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
|+++|+++.|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999543 26999999999999999999999999999999999999999999988652 24899
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCCcHHHHH---------HHHHhc--CCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR---------AHLGSF--GVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
++|++.. +. .+..+++...........+. ++++.+ ++. ...++++.+||| ||+|||+||+
T Consensus 81 ~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~-----G~~qrv~la~ 151 (234)
T cd03251 81 VSQDVFL-FN--DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSG-----GQRQRIAIAR 151 (234)
T ss_pred eCCCCee-cc--ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCH-----HHHHHHHHHH
Confidence 9998642 22 35555443221111222232 334444 443 234566778888 9999999998
Q ss_pred ccc
Q 029133 193 RRD 195 (198)
Q Consensus 193 ~~~ 195 (198)
+--
T Consensus 152 al~ 154 (234)
T cd03251 152 ALL 154 (234)
T ss_pred HHh
Confidence 743
No 258
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.8e-25 Score=179.68 Aligned_cols=134 Identities=17% Similarity=0.243 Sum_probs=100.8
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc--------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~-------- 118 (198)
..++|.++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|++.| ++|+|.+++.
T Consensus 17 ~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 456899999999995 45799999999999999999999999999999999999863 6899987641
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .++.+++... ... ..++.+.++++.+++.. +..++++.+||| ||+
T Consensus 96 ~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg-----Gq~ 167 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG-----GQQ 167 (274)
T ss_pred hHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCH-----HHH
Confidence 248999998642 22 2444433211 111 12345667788888732 234677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 168 qrv~LAraL 176 (274)
T PRK14265 168 QRLCIARAI 176 (274)
T ss_pred HHHHHHHHH
Confidence 999999874
No 259
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=197.04 Aligned_cols=134 Identities=11% Similarity=0.153 Sum_probs=102.5
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
.++|+++|+++.|. .+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 263 ~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 45899999998773 3899999999999999999999999999999999999999999998652 24
Q ss_pred EEEeccccC-CCCCCCCcHHHHHHHh-------C-------C-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChH
Q 029133 121 IAVFSQHHV-DGLDLSSNPLLYMMRC-------F-------P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~~-------~-------~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge 184 (198)
++|++|++. ..+....++.+++... . . ......+.++|+.+++..+..++++.+||| ||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gq 414 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG-----GN 414 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh-----HH
Confidence 899999731 1122223444332211 0 0 011245778999999963456889999999 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
||||+||++-
T Consensus 415 ~qrv~lAral 424 (510)
T PRK09700 415 QQKVLISKWL 424 (510)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 260
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=4.4e-25 Score=178.01 Aligned_cols=123 Identities=25% Similarity=0.310 Sum_probs=91.1
Q ss_pred EEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEecc-ccCCC
Q 029133 63 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQ-HHVDG 131 (198)
Q Consensus 63 ~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~q-~~~~~ 131 (198)
+.| +.+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++| .....
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 456 3467999999999999999999999999999999999999999999988653 24889874 33221
Q ss_pred CCCCCcHHHHH--HHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 132 LDLSSNPLLYM--MRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 132 ~~~~~~~~~~~--~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.. .+..+++ ....... ....+.++++.+++. ...++++..||| ||+||++||++-
T Consensus 108 ~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrl~la~al 168 (236)
T cd03267 108 WD--LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSL-----GQRMRAEIAAAL 168 (236)
T ss_pred CC--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 22 2332222 1111111 234567889999996 456788899999 999999999764
No 261
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.4e-25 Score=177.68 Aligned_cols=132 Identities=19% Similarity=0.267 Sum_probs=100.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~---------- 118 (198)
++|.++|+++.|+ .+.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4789999999995 4679999999999999999999999999999999999997 47999987652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .+..+++.. ...+. .+..+.++++.+++.. ...++++.+||| ||+
T Consensus 82 ~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----Gq~ 153 (251)
T PRK14251 82 ELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG-----GQQ 153 (251)
T ss_pred HhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH-----HHH
Confidence 138999998532 22 244433321 11111 1345678889888842 234677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
||++||++-
T Consensus 154 qr~~laral 162 (251)
T PRK14251 154 QRICIARAL 162 (251)
T ss_pred HHHHHHHHH
Confidence 999999864
No 262
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=177.08 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=99.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-----~G~i~~~~~---------- 118 (198)
++|.++++++.|+ .+.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5789999999995 467999999999999999999999999999999999999997 699987541
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +.. +..+++.. ...+. .++.+.+++..+++.. ...++++..||| ||+
T Consensus 82 ~~~~~i~~v~q~~~~-~~~--tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNP-FPK--SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG-----GQQ 153 (251)
T ss_pred HhhceEEEEecCCcc-CcC--cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH-----HHH
Confidence 249999998642 222 44333321 11111 1345667788888742 234677788888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 154 qrv~laral 162 (251)
T PRK14249 154 QRLCIARVL 162 (251)
T ss_pred HHHHHHHHH
Confidence 999999864
No 263
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=2.8e-25 Score=196.31 Aligned_cols=137 Identities=23% Similarity=0.324 Sum_probs=103.4
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCeEEecCc------------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK------------ 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-~~G~i~~~~~------------ 118 (198)
..++|+++|+++.|+ +..+|+|+||+|.+|++++|+||||||||||+++|+|+.+| ++|+|.+++.
T Consensus 257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 356899999999995 45699999999999999999999999999999999998876 6999988642
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHh-------CCCC---cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
..++|++|++........+....+... .... .++.+.++++.+++.....++++.+||| ||||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gq~qrv 410 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSW-----GQQRLA 410 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCH-----HHHHHH
Confidence 248999997532222212222221100 0011 1356789999999974356889999999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 411 ~la~al 416 (490)
T PRK10938 411 LIVRAL 416 (490)
T ss_pred HHHHHH
Confidence 999864
No 264
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=176.84 Aligned_cols=132 Identities=21% Similarity=0.319 Sum_probs=99.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---CCC--CCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQP--SSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~---~~p--~~G~i~~~~~---------- 118 (198)
++|+++|+++.|+ .+.+|+|+||+|.+|++++|+||||||||||+++|+|+ ++| ++|+|.+++.
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5789999999995 46799999999999999999999999999999999997 454 5899987642
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .+..+++.. .... ..++.+.++++.+++.. ...++++.+||| ||+
T Consensus 81 ~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----G~~ 152 (250)
T PRK14245 81 ELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSG-----GQQ 152 (250)
T ss_pred HHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCH-----HHH
Confidence 148999998642 22 244333321 1111 12356778899999853 234677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 153 qrv~laral 161 (250)
T PRK14245 153 QRLCIARAM 161 (250)
T ss_pred HHHHHHHHH
Confidence 999999864
No 265
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=3.1e-25 Score=195.98 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=101.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 689999999995 456999999999999999999999999999999999999999999987542 12789
Q ss_pred eccccCCCC-CC-----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGL-DL-----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++...+ .. ..+....+.. .....+++.++++.+++. +..++++.+||| ||||||+||++.
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la~al 150 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQD--EVKDPARCEQLAQQFGIT-ALLDRRFKYLST-----GETRKTLLCQAL 150 (490)
T ss_pred eccCcchhhcccchhhccccHHHhccc--chhHHHHHHHHHHHcCCH-hhhhCCcccCCH-----HHHHHHHHHHHH
Confidence 998743111 10 1122222110 112346688999999996 456889999999 999999999874
No 266
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=178.69 Aligned_cols=133 Identities=16% Similarity=0.231 Sum_probs=101.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~--------- 118 (198)
.++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46899999999995 4579999999999999999999999999999999999987 48999987541
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|+... +.. +..+++.. ...+. .++.+.++++.+++.. ...++++..||| ||
T Consensus 102 ~~~~~~i~~v~q~~~l-~~~--tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNP-FPK--SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG-----GQ 173 (272)
T ss_pred HHHhccEEEEecCCcc-Ccc--cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH-----HH
Confidence 248999998532 222 44443321 11111 1345778889888853 234667788888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++-
T Consensus 174 ~qrv~laral 183 (272)
T PRK14236 174 QQRLVIARAI 183 (272)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 267
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.92 E-value=5.1e-25 Score=176.41 Aligned_cols=132 Identities=15% Similarity=0.265 Sum_probs=99.8
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCeEEecCc--------ee
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK--------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~---p~~G~i~~~~~--------~~ 120 (198)
.+.+++++++|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 46789999999654 579999999999999999999999999999999999999 99999998653 35
Q ss_pred EEEeccccCCCCCCCCcHHHHHH---H-hC-CCCc----HHHHHH-HHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMM---R-CF-PGVP----EQKLRA-HLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~---~-~~-~~~~----~~~~~~-~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
++|++|++..... .++.+++. . .. .... ...+.+ +++.+++. ...++.+..||| ||+|||+|
T Consensus 83 i~~~~q~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPG--LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISG-----GERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcC--CcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCH-----HHHHHHHH
Confidence 8999998543222 23333222 1 11 1111 123444 78888886 455778888999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 155 aral 158 (226)
T cd03234 155 AVQL 158 (226)
T ss_pred HHHH
Confidence 9874
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=177.71 Aligned_cols=136 Identities=21% Similarity=0.314 Sum_probs=101.6
Q ss_pred CCCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc-------
Q 029133 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------- 118 (198)
Q Consensus 51 ~~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~------- 118 (198)
+....|+++|+++.|+ .+.+|+|+||+|.+||+++|+|+||||||||+++|+|++.| ++|+|.+++.
T Consensus 12 ~~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 12 PTQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3456899999999995 45799999999999999999999999999999999999975 7999987531
Q ss_pred --------eeEEEeccccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCC
Q 029133 119 --------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGC 180 (198)
Q Consensus 119 --------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~l 180 (198)
..++|++|++.. +. .+..+++... ..+ ..++.+.++++.+++.. ...++++..|||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~--- 164 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNP-FP--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG--- 164 (265)
T ss_pred ccCHHHHhccEEEEccCCcC-Cc--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH---
Confidence 248999998542 22 2443333211 111 12356678888887742 234567788888
Q ss_pred CChHHHHHhhccccc
Q 029133 181 SGGTNSRPCFVPRRD 195 (198)
Q Consensus 181 s~Ge~~rv~la~~~~ 195 (198)
||+|||+||++.-
T Consensus 165 --G~~qrv~laral~ 177 (265)
T PRK14252 165 --GQQQRLCIARALA 177 (265)
T ss_pred --HHHHHHHHHHHHH
Confidence 9999999998743
No 269
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.92 E-value=9.9e-25 Score=198.77 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=104.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
..|+++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++....++|++|++.. +.
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l-~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM-TL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCC-CC
Confidence 46999999999964557999999999999999999999999999999999999999999988777789999999642 22
Q ss_pred CCCcHHHHHHHhC-------CCCcHHHHHHHHHhcCCCcccccCcc-----ccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNLALQPM-----YTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+..+++.... ....++++.++++.+++.+ ..+++. .. .+.+||||||||++||++-
T Consensus 529 --~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~-~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 529 --GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQD-WMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred --cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH-HHhhcCCcccccc-cccCCCHHHHHHHHHHHHH
Confidence 25555543211 2234677889999999964 333332 11 1224555999999999874
No 270
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=176.42 Aligned_cols=133 Identities=20% Similarity=0.296 Sum_probs=99.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~--p---~~G~i~~~~~--------- 118 (198)
.++|+++|+++.|+ .+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 46799999999995 4679999999999999999999999999999999999875 5 5899987652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCC--C---cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~---~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .+...++.. ...+ . .++.+.++++.+++.. +..++++.+||| ||
T Consensus 82 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~-----Gq 153 (252)
T PRK14255 82 VQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG-----GQ 153 (252)
T ss_pred HHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCH-----HH
Confidence 248999998542 22 233333221 1111 1 1244567788887642 234677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++.
T Consensus 154 ~qrv~laral 163 (252)
T PRK14255 154 QQRVCIARVL 163 (252)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 271
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.2e-25 Score=179.53 Aligned_cols=133 Identities=22% Similarity=0.248 Sum_probs=99.5
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~--------- 118 (198)
.++|+++||++.|+ ..++|+|+||+|.+|++++|+|+||||||||+++|+|++. |++|+|.+++.
T Consensus 8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 35899999999995 4579999999999999999999999999999999999986 48999987652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .+..+++... ... ...+.+.+++..+++.. ...++++.+||| ||+|
T Consensus 87 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg-----Gq~q 158 (264)
T PRK14243 87 VEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSG-----GQQQ 158 (264)
T ss_pred HHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCH-----HHHH
Confidence 248999998632 22 2444433211 111 12345667788887742 234567788888 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 159 rv~laral 166 (264)
T PRK14243 159 RLCIARAI 166 (264)
T ss_pred HHHHHHHH
Confidence 99999875
No 272
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.9e-26 Score=176.47 Aligned_cols=131 Identities=21% Similarity=0.353 Sum_probs=102.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce-----------eEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-----------~i~~ 123 (198)
+|+++|+++.| +.+.+++++|++|++|.+++|+|||||||||||.+++.+.++++|+|.+++.. .++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 57899999999 56789999999999999999999999999999999999999999999987632 3555
Q ss_pred eccccCCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
+.|.......++...+..+.++. ...++..+.++++-|+|. +..++...+||| |||||..+|-
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSG-----GQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSG-----GQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhccc-----chhhhhhhhe
Confidence 66653222222222233222211 123467789999999997 678999999999 9999988774
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=7.7e-25 Score=196.90 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=105.7
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (198)
..++++++++++.|+ + ..|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ ..++|++|+....
T Consensus 337 ~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~~~ 412 (590)
T PRK13409 337 RETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIKPD 412 (590)
T ss_pred CceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEecccccCC
Confidence 356899999999995 3 35899999999999999999999999999999999999999999886 5799999986432
Q ss_pred CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 132 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
...++.+++...... .....+.++|+.+++. +..++++.+||| ||||||+||++.-
T Consensus 413 --~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSG-----Ge~QRvaiAraL~ 469 (590)
T PRK13409 413 --YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSG-----GELQRVAIAACLS 469 (590)
T ss_pred --CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCH-----HHHHHHHHHHHHh
Confidence 233444433221111 1234567899999997 567899999999 9999999998753
No 274
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=2.1e-24 Score=170.59 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=95.6
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++++++.|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999642 47999999999999999999999999999999999999999999998752 249
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. +. .+...++... .......+.++++ .+.++..||| ||+|||+||++-
T Consensus 85 ~~v~q~~~~-~~--~tv~~~l~~~-~~~~~~~~~~~l~--------~~~~~~~LS~-----G~~qrv~laral 140 (207)
T cd03369 85 TIIPQDPTL-FS--GTIRSNLDPF-DEYSDEEIYGALR--------VSEGGLNLSQ-----GQRQLLCLARAL 140 (207)
T ss_pred EEEecCCcc-cC--ccHHHHhccc-CCCCHHHHHHHhh--------ccCCCCcCCH-----HHHHHHHHHHHH
Confidence 999998632 22 3454444221 1223444555554 2456788888 999999999864
No 275
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=176.30 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=98.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~----------- 118 (198)
+|+++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 689999999995 56799999999999999999999999999999999999986 5999987642
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHHH
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
..++|++|++.. +. .+..+++.. ..... .++++.++++.+++.. ...++++.+||| ||+||
T Consensus 82 ~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~-----G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSG-----GQQQR 153 (249)
T ss_pred HhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCH-----HHHHH
Confidence 248999998642 22 243333321 11111 1345667788888743 234667788888 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 154 v~laral 160 (249)
T PRK14253 154 LCIARTI 160 (249)
T ss_pred HHHHHHH
Confidence 9999864
No 276
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=4.7e-25 Score=195.32 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=103.1
Q ss_pred CCeEEEEeeEEEcC--CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCeEEecCc-----------
Q 029133 53 PPIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK----------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-~~G~i~~~~~----------- 118 (198)
.++|+++|+++.|+ ++..+|+|+||+|.+||+++|+|||||||||||++|+|+++| ++|+|.+++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 45899999999983 234689999999999999999999999999999999999995 8999998652
Q ss_pred -eeEEEeccccC-CCCCCCCcHHHHHHH----hC---CC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CF---PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~----~~---~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++. ..+....++.+++.. .. .. ..++.+.++|+.+++.....++++.+||| |||
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gqk 409 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSG-----GNQ 409 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCH-----HHH
Confidence 24899999852 011112233222211 01 01 12356789999999964446889999999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 410 qrv~la~al 418 (500)
T TIGR02633 410 QKAVLAKML 418 (500)
T ss_pred HHHHHHHHH
Confidence 999999874
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.9e-25 Score=196.30 Aligned_cols=128 Identities=25% Similarity=0.235 Sum_probs=99.7
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeEEEec
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFS 125 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i~~~~ 125 (198)
++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368999995 467999999999999999999999999999999999999999999998652 2489999
Q ss_pred cccCCCCCCCCcHHHHHHHh---CCC--C----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRC---FPG--V----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~---~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.... ..++.+++... ... . ..+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 80 q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~qrv~lA~al 149 (491)
T PRK10982 80 QELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSV-----SQMQMIEIAKAF 149 (491)
T ss_pred ccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCH-----HHHHHHHHHHHH
Confidence 9863222 23443333211 011 1 134677899999997 456788999999 999999999864
No 278
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=8.9e-25 Score=194.38 Aligned_cols=131 Identities=20% Similarity=0.317 Sum_probs=99.4
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCeEEecC----------------
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSA---------------- 117 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~G~i~~~~---------------- 117 (198)
|+++|+++.|+ ++.+|+++||+|.+|++++|+|||||||||||++|+|++ +|++|+|.++.
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 567999999999999999999999999999999999997 79999998751
Q ss_pred ----------------------------ceeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCC
Q 029133 118 ----------------------------KVRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGV 163 (198)
Q Consensus 118 ----------------------------~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l 163 (198)
...++|++|++...+. ..+..+++.. ...+. ..+++.++++.+++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 1138999996311111 1233332211 11111 23567889999999
Q ss_pred CcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 164 TGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 164 ~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
. ...++++.+||| ||||||+||++-
T Consensus 159 ~-~~~~~~~~~LSg-----Gq~qrv~iA~al 183 (520)
T TIGR03269 159 S-HRITHIARDLSG-----GEKQRVVLARQL 183 (520)
T ss_pred h-hhhhcCcccCCH-----HHHHHHHHHHHH
Confidence 6 456788999999 999999999874
No 279
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=7.3e-25 Score=177.85 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=91.5
Q ss_pred EcCCCCcceeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcH
Q 029133 64 GYPGGPILFKNLNFGID-----LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP 138 (198)
Q Consensus 64 ~y~~~~~~l~~isl~i~-----~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~ 138 (198)
.|++....+++++|++. +|++++|+|||||||||||++|+|+++|++|+|.+++. .++|++|+....+. .++
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~~~--~tv 78 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKADYE--GTV 78 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCCCC--CCH
Confidence 45433346677777776 79999999999999999999999999999999998765 79999998643222 333
Q ss_pred HHHHHHhC--CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 139 LLYMMRCF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
.+++.... .......+.++++.+++. ...++++.+||| ||+|||+||++.-
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSg-----Ge~qrv~iaraL~ 131 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIE-QILDREVPELSG-----GELQRVAIAACLS 131 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCH-HHhhCChhhCCH-----HHHHHHHHHHHHh
Confidence 33332111 111234467889999996 456788999999 9999999998753
No 280
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=177.61 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=100.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~---------- 118 (198)
++|+++|+++.|+ ...+|+|+||+|.+|++++|+|+|||||||||++|+|+++| ++|+|.+++.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4789999999995 46799999999999999999999999999999999999985 4899987642
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHH---hC---CCC-cHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CF---PGV-PEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~---~~---~~~-~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|++.. +. .++.+++.. .. ... ..+.+.++++.+++.. ...++++.+||| ||+
T Consensus 85 ~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG-----GQQ 156 (259)
T ss_pred hhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH-----HHH
Confidence 148999998642 22 344443321 11 111 1345678889888842 245677788888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++.
T Consensus 157 qrv~laral 165 (259)
T PRK14260 157 QRLCIARAL 165 (259)
T ss_pred HHHHHHHHH
Confidence 999999874
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=2.7e-25 Score=172.27 Aligned_cols=112 Identities=34% Similarity=0.555 Sum_probs=84.8
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCC
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 136 (198)
+++|+++.|+ ...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. + . ...
T Consensus 1 ~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~-~--------~--~~~- 67 (180)
T cd03214 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD-L--------A--SLS- 67 (180)
T ss_pred CeeEEEEEEC-CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-C--------C--cCC-
Confidence 3689999995 4679999999999999999999999999999999999999999999876421 0 0 001
Q ss_pred cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
... +... -..+.++++.+++. +..++++..||| ||+||++||++.
T Consensus 68 -~~~-~~~~-----i~~~~q~l~~~gl~-~~~~~~~~~LS~-----G~~qrl~laral 112 (180)
T cd03214 68 -PKE-LARK-----IAYVPQALELLGLA-HLADRPFNELSG-----GERQRVLLARAL 112 (180)
T ss_pred -HHH-HHHH-----HhHHHHHHHHcCCH-hHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 100 0000 01111288999997 455778888999 999999999864
No 282
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=180.19 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=102.1
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc--------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~-------- 118 (198)
..++|.++||++.|+ ...+|+++||+|.+|++++|+|+|||||||||++|+|+++ |++|+|.+++.
T Consensus 42 ~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 456899999999995 4679999999999999999999999999999999999986 68999987642
Q ss_pred -----eeEEEeccccCCCCCCCCcHHHHHHHh---C-------------C---CCcHHHHHHHHHhcCCCc---ccccCc
Q 029133 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC---F-------------P---GVPEQKLRAHLGSFGVTG---NLALQP 171 (198)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~-------------~---~~~~~~~~~~L~~~~l~~---~~~~~~ 171 (198)
..++|++|++.. +. .++.+++... . . ....+.+.++++.+++.. ...+++
T Consensus 121 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 121 LVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred HHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 248999998532 22 2443333211 0 0 011345778899998842 234667
Q ss_pred cccccCCCCCChHHHHHhhccccc
Q 029133 172 MYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 172 ~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
+.+||| ||+|||+||++.-
T Consensus 198 ~~~LSg-----Gq~qrv~LAraL~ 216 (305)
T PRK14264 198 ALGLSG-----GQQQRLCIARCLA 216 (305)
T ss_pred cccCCH-----HHHHHHHHHHHHh
Confidence 788888 9999999998753
No 283
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=2.1e-24 Score=177.67 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=103.5
Q ss_pred eEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
.|.++|+++.|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++++. ..++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 3789999999953 4579999999999999999999999999999999999997 7899998762 2589
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCcccc------ccCCCCCChHHHHHhhccccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT------LSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~------LSG~~ls~Ge~~rv~la~~~~ 195 (198)
|++|++.. +. .+...++... .....+++.++++.+++.. ..++.+.. -+|.+|||||+|||+||++--
T Consensus 81 ~v~q~~~l-f~--~tv~~nl~~~-~~~~~~~~~~~l~~~gL~~-~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 81 VIPQKVFI-FS--GTFRKNLDPY-GKWSDEEIWKVAEEVGLKS-VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred EECCCccc-ch--hhHHHHhhhc-cCCCHHHHHHHHHHcCCHH-HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 99998642 22 3555554322 1245677889999999963 34444443 134556669999999998743
No 284
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-25 Score=177.56 Aligned_cols=136 Identities=26% Similarity=0.389 Sum_probs=103.9
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------e
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 119 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~ 119 (198)
..+.|.++|+++.| +++.+|+|+||+|++||..+|+|||||||||||++++|.++|++|.+.+-+. .
T Consensus 28 ~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 35789999999999 5678999999999999999999999999999999999999999998875432 3
Q ss_pred eEEEeccccCCCCCCCCcHHHHH----H---HhC----CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYM----M---RCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~----~---~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
+|||++......+....+..+.+ . ..+ .....+++..+|+.+++. +..++++.+||- ||||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~-----Ge~rrv 180 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQ-----GEQRRV 180 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCH-----hHHHHH
Confidence 58888654322222211211111 0 011 112346677899999997 578999999999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
.|||+-
T Consensus 181 LiaRAL 186 (257)
T COG1119 181 LIARAL 186 (257)
T ss_pred HHHHHH
Confidence 999974
No 285
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=7.8e-25 Score=187.25 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------------ee
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------------VR 120 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------------~~ 120 (198)
++.+.| +...+|+|+||+|++||+++|+|+|||||||||++|+|+++|++|+|.+++. ..
T Consensus 29 ~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 455667 4567899999999999999999999999999999999999999999998752 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++.... ..+..+++... ..+. ..+.+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 108 i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSg-----Gq~QRV~LARAL 179 (382)
T TIGR03415 108 VSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSG-----GMQQRVGLARAF 179 (382)
T ss_pred EEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 999999864322 23334333211 1111 235678999999997 456888999999 999999999874
No 286
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=175.23 Aligned_cols=133 Identities=18% Similarity=0.259 Sum_probs=99.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
.++|.++++++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|++.| ++|+|.+++.
T Consensus 4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 45899999999995 56799999999999999999999999999999999999763 4899987641
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGT 184 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge 184 (198)
..++|++|++.. +. .++.+++.. ...+ ..+..+.++++.+++.. ...++++..||| ||
T Consensus 83 ~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----G~ 154 (253)
T PRK14261 83 VALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG-----GQ 154 (253)
T ss_pred hhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH-----HH
Confidence 248999998642 22 244443321 1111 11345677888888742 234677888888 99
Q ss_pred HHHHhhcccc
Q 029133 185 NSRPCFVPRR 194 (198)
Q Consensus 185 ~~rv~la~~~ 194 (198)
+|||+||++.
T Consensus 155 ~qrv~laral 164 (253)
T PRK14261 155 QQRLCIARTL 164 (253)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 287
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=2.6e-24 Score=195.41 Aligned_cols=129 Identities=22% Similarity=0.359 Sum_probs=100.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (198)
+|.+++|++.|+ +..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|.+....
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~-- 79 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV-- 79 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC--
Confidence 689999999995 56799999999999999999999999999999999999999999999987667889888642111
Q ss_pred CCcHHHHH---------------------------------H------HhCC-CCcHHHHHHHHHhcCCCcccccCcccc
Q 029133 135 SSNPLLYM---------------------------------M------RCFP-GVPEQKLRAHLGSFGVTGNLALQPMYT 174 (198)
Q Consensus 135 ~~~~~~~~---------------------------------~------~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~ 174 (198)
..+.+..+ . .... .....++.++|..++|. .++++.+
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~ 156 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSS 156 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhh
Confidence 11111000 0 0000 11245688899999996 2688999
Q ss_pred ccCCCCCChHHHHHhhcccc
Q 029133 175 LSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 175 LSG~~ls~Ge~~rv~la~~~ 194 (198)
||| ||||||+||++-
T Consensus 157 LSg-----GekqRv~LAraL 171 (635)
T PRK11147 157 LSG-----GWLRKAALGRAL 171 (635)
T ss_pred cCH-----HHHHHHHHHHHH
Confidence 999 999999999874
No 288
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=175.27 Aligned_cols=130 Identities=19% Similarity=0.258 Sum_probs=97.6
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc------------
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------------ 118 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~------------ 118 (198)
-+++|+++.|+ .+.+|+|+||+|.+|++++|+|+||||||||+++|+|++. |++|+|.+++.
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 46899999995 5679999999999999999999999999999999999986 47999988652
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCcc---cccCccccccCCCCCChHHH
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTGN---LALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~L~~~~l~~~---~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +.. ++.+++... ..+ ..++.+.++++.+++... ..++++..||| ||+|
T Consensus 85 ~~~i~~v~q~~~~-~~~--tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~-----Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNP-FPK--SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG-----GQQQ 156 (251)
T ss_pred hhhEEEEecCccc-ccC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH-----HHHH
Confidence 148999998532 222 333332211 111 123456788999998531 34567788888 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 157 rv~laral 164 (251)
T PRK14244 157 RLCIARAI 164 (251)
T ss_pred HHHHHHHH
Confidence 99999874
No 289
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=188.87 Aligned_cols=134 Identities=21% Similarity=0.283 Sum_probs=108.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
.+.+++++++|+|+ +..+|+++||+|++||++||+|.||||||||+|+|+|.++|++|+|.+++. ..
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 46899999999995 578999999999999999999999999999999999999999999999864 35
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH--hCC---C-C----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFP---G-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~---~-~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
|+.+.|+.....++ ++.++++. ... + . ...+++++|+.+++..+ .+.++.+||. ||||.|+|
T Consensus 85 I~~V~QEl~L~p~L--sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~Lsi-----aqrQ~VeI 156 (500)
T COG1129 85 IATVHQELSLVPNL--SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSI-----AQRQMVEI 156 (500)
T ss_pred cEEEeechhccCCc--cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCH-----HHHHHHHH
Confidence 99999986543333 34444321 111 1 1 24667889999999633 7889999999 99999999
Q ss_pred ccccc
Q 029133 191 VPRRD 195 (198)
Q Consensus 191 a~~~~ 195 (198)
|++-.
T Consensus 157 ArAl~ 161 (500)
T COG1129 157 ARALS 161 (500)
T ss_pred HHHHh
Confidence 99754
No 290
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.2e-24 Score=179.01 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=99.7
Q ss_pred CCCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc-------
Q 029133 52 GPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~------- 118 (198)
...+|.++|+++.|.+ ..++|+|+||+|.+|+++||+|||||||||||++|+|+.. |++|+|.+++.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3468999999999953 3569999999999999999999999999999999999986 57999987542
Q ss_pred ------eeEEEeccccCCCCCCCCcHHHHHH--HhCCCCc-----HHHHHHHHHhcCCCcc---cccCccccccCCCCCC
Q 029133 119 ------VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP-----EQKLRAHLGSFGVTGN---LALQPMYTLSGFGCSG 182 (198)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~L~~~~l~~~---~~~~~~~~LSG~~ls~ 182 (198)
..++|++|++.. +. .+..+++. ....... ++.+.++++.+++..+ ..++++.+|||
T Consensus 157 ~~~~lr~~i~~v~q~~~~-~~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg----- 228 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTP-FE--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG----- 228 (329)
T ss_pred chHhhhccEEEEecCCcc-CC--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH-----
Confidence 259999998753 22 34444443 1111111 1235678888887432 23455666666
Q ss_pred hHHHHHhhcccc
Q 029133 183 GTNSRPCFVPRR 194 (198)
Q Consensus 183 Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 229 GqkqRl~LARAl 240 (329)
T PRK14257 229 GQQQRLCIARAI 240 (329)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 291
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.8e-24 Score=174.45 Aligned_cols=134 Identities=17% Similarity=0.200 Sum_probs=102.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc---------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~--------- 118 (198)
++.+.+++++++|+ +..+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 46799999999994 56799999999999999999999999999999999999986 7999987652
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHHh--C---CCCcHHHHHHHHHhcCCCcc---cccCccccccCCCCCChHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F---PGVPEQKLRAHLGSFGVTGN---LALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~L~~~~l~~~---~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .+..+++... . .....+.+.++++.+++... ..++++..||| ||+|
T Consensus 85 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~-----G~~q 156 (261)
T PRK14263 85 VVVRRYIGMVFQQPNP-FS--MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG-----GQQQ 156 (261)
T ss_pred HhhhhceEEEecCCcc-cc--ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH-----HHHH
Confidence 238999998642 22 3444433211 1 11123567889999998532 23456677888 9999
Q ss_pred HHhhccccc
Q 029133 187 RPCFVPRRD 195 (198)
Q Consensus 187 rv~la~~~~ 195 (198)
|++||++.-
T Consensus 157 rv~laral~ 165 (261)
T PRK14263 157 RLCIARAIA 165 (261)
T ss_pred HHHHHHHHH
Confidence 999998753
No 292
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.3e-24 Score=202.67 Aligned_cols=139 Identities=24% Similarity=0.383 Sum_probs=108.8
Q ss_pred CCeEEEEeeEEEcCCCC--cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------e
Q 029133 53 PPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~ 119 (198)
...|+++||.|+|+.++ .+|+++||+|++|+.++|||||||||||++++|.++|.|++|+|.+++. .
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 34799999999998643 7999999999999999999999999999999999999999999998873 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc-----cCccccccCCCCCChHHHHHhhcccc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA-----LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.||.|.|+|.. +..+..+++....++.+++++.++++..+...... ......--|..|||||||||||||+-
T Consensus 428 ~iglV~QePvl---F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 428 QIGLVSQEPVL---FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred hcCeeeechhh---hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 59999999853 34566777776666777888888887776542111 11111222345677999999999863
No 293
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=8.4e-24 Score=206.33 Aligned_cols=135 Identities=16% Similarity=0.265 Sum_probs=107.6
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||+++|++ .+++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|.+++. ..+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 46999999999964 3679999999999999999999999999999999999997 7999998863 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc------ccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|+||++.. + ..++..++.. ....+++++.++|+.+++.+.. .+..+.+ .|.+||||||||+||||+-
T Consensus 1295 s~IpQdp~L-F--~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1295 GVIPQKVFI-F--SGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred EEEeCCCcc-C--ccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHH
Confidence 999999753 2 3466665532 2235688999999999985322 2333332 5678999999999999964
No 294
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.1e-24 Score=173.74 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=99.8
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CCeEEecCc----------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK---------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-----~G~i~~~~~---------- 118 (198)
++|+++|+++.|+ ...+|+|+||+|++|++++|+|+|||||||||++|+|+++|+ +|+|.+++.
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4799999999995 457999999999999999999999999999999999999985 788876541
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHH
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|+... +. .+..+++... ..+ ...+.+.++++.+++.. ...++++.+||| ||+
T Consensus 85 ~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg-----Gq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG-----GQQ 156 (261)
T ss_pred HhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH-----HHH
Confidence 238999998532 22 3444333211 111 11345678899998742 235677888888 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 157 qrv~laral 165 (261)
T PRK14258 157 QRLCIARAL 165 (261)
T ss_pred HHHHHHHHH
Confidence 999999864
No 295
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.8e-24 Score=169.55 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=88.2
Q ss_pred eEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCeEEecCc----------
Q 029133 55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK---------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~---p~~G~i~~~~~---------- 118 (198)
.+.++||+|.|+. ++.+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999963 4579999999999999999999999999999999999999 89999987652
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..++|++|+.... ...++.+++.... .. . .++++..||| ||+||++||++-
T Consensus 83 ~~i~~~~q~~~~~--~~~tv~~~l~~~~------~~-------~-----~~~~~~~LS~-----Ge~qrl~laral 133 (202)
T cd03233 83 GEIIYVSEEDVHF--PTLTVRETLDFAL------RC-------K-----GNEFVRGISG-----GERKRVSIAEAL 133 (202)
T ss_pred ceEEEEecccccC--CCCcHHHHHhhhh------hh-------c-----cccchhhCCH-----HHHHHHHHHHHH
Confidence 1488999875322 2234444332110 00 0 3567788888 999999999864
No 296
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.91 E-value=2.7e-24 Score=172.18 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=95.1
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (198)
+.+++++++|+ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. +.++.+... +...
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~~~--~~~~ 98 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLGGG--FNPE 98 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccccc--CCCC
Confidence 77899999994 5779999999999999999999999999999999999999999999987642 111111111 1122
Q ss_pred CcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 136 SNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 136 ~~~~~~~~--~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.++.+++. ...... ..+.+.++++.+++. +..++++..||| ||||||+||++-
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~laral 157 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSS-----GMKARLAFAIAT 157 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 23333322 111111 134567889999996 456788899999 999999999864
No 297
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-24 Score=174.63 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=95.7
Q ss_pred CeEEEEeeEEEcCCC--------CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEec
Q 029133 54 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 125 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~ 125 (198)
++++++||++.|.-. ..+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|++.+..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~------ 76 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD------ 76 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc------
Confidence 578999999999532 268999999999999999999999999999999999999999999876432
Q ss_pred cccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
. ..+. .....+++.++|+.+|+..+..++.+.+||| ||+|||.||++-
T Consensus 77 --i---~~~~-----------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG-----GQrQRi~IARAL 124 (268)
T COG4608 77 --I---TKLS-----------KEERRERVLELLEKVGLPEEFLYRYPHELSG-----GQRQRIGIARAL 124 (268)
T ss_pred --h---hhcc-----------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc-----hhhhhHHHHHHH
Confidence 0 0011 1123567899999999998889999999999 999999999874
No 298
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=2.4e-24 Score=184.60 Aligned_cols=131 Identities=20% Similarity=0.304 Sum_probs=107.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
+.++++++++.|+ +..++++|||+|++||+.||+|.||||||||+++|.|+++|++|+|+++++ ..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5789999999996 677899999999999999999999999999999999999999999999874 359
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCC---------CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
|+|.|++..... .++.+++..... ....+++.++.+.+||+- ..+..+.+||= ||||||.|.+
T Consensus 82 GMVhQHF~Lv~~--lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsV-----G~qQRVEIlK 153 (501)
T COG3845 82 GMVHQHFMLVPT--LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSV-----GEQQRVEILK 153 (501)
T ss_pred cEEeeccccccc--cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCc-----chhHHHHHHH
Confidence 999999754333 344444332221 123577889999999974 45788999999 9999999876
Q ss_pred c
Q 029133 193 R 193 (198)
Q Consensus 193 ~ 193 (198)
+
T Consensus 154 a 154 (501)
T COG3845 154 A 154 (501)
T ss_pred H
Confidence 4
No 299
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.2e-24 Score=172.93 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=98.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCeEEecCc-----------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK----------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-----p~~G~i~~~~~----------- 118 (198)
+|.+++|++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+.. |++|+|.+++.
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 588999999995 4679999999999999999999999999999999999864 48999987652
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCccccccCCCCCChHHH
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~---~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
..++|++|++.. +. .+..+++... ... ..++.+.++++.+++.. ...++++..||| ||+|
T Consensus 82 ~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~-----Gq~q 153 (250)
T PRK14266 82 LRKKVGMVFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSG-----GQQQ 153 (250)
T ss_pred HhhheEEEecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCH-----HHHH
Confidence 148999998642 22 2444433211 111 12355778899998843 234667788888 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 154 rv~laral 161 (250)
T PRK14266 154 RLCIARTI 161 (250)
T ss_pred HHHHHHHH
Confidence 99999874
No 300
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.1e-24 Score=164.69 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=105.9
Q ss_pred CeEEEEeeEEEcCCC--------CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------
Q 029133 54 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------- 118 (198)
+.++++|+++.|... ..+++.|||+++.|+.+||+|.||||||||.|+|+|+++|++|+|.+++.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 357888888877421 24679999999999999999999999999999999999999999998763
Q ss_pred ----eeEEEeccccCCCCCCCCcH---HHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNP---LLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
..|-+++|++...++.+.+. ++.-.+..... ..+++.+.|..+|+-++..+-++..||- |||||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~-----~QKQR 157 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAP-----GQKQR 157 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCc-----hhHHH
Confidence 24778888876545444332 22111111222 2467889999999998888999999999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
||||++.
T Consensus 158 VaLARAL 164 (267)
T COG4167 158 VALARAL 164 (267)
T ss_pred HHHHHHH
Confidence 9999873
No 301
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.91 E-value=4.7e-24 Score=159.81 Aligned_cols=70 Identities=46% Similarity=0.748 Sum_probs=64.7
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEecc
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q 126 (198)
++++++++.|+ ...+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEEC-CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc
Confidence 46899999995 45799999999999999999999999999999999999999999999988777888887
No 302
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=7.1e-24 Score=164.57 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=63.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
+++|+++|+++.| +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3579999999998 899999999999999999999999999999999999999999988652 24
Q ss_pred EEEecccc
Q 029133 121 IAVFSQHH 128 (198)
Q Consensus 121 i~~~~q~~ 128 (198)
++|++|++
T Consensus 77 i~~~~q~~ 84 (182)
T cd03215 77 IAYVPEDR 84 (182)
T ss_pred eEEecCCc
Confidence 88888874
No 303
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=1.5e-23 Score=205.30 Aligned_cols=135 Identities=21% Similarity=0.325 Sum_probs=107.8
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-CeEEecCceeEEEeccccCC
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVD 130 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~-G~i~~~~~~~i~~~~q~~~~ 130 (198)
..|.++|+++.|+. .+++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|.+. ..|+|++|++..
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~--~~Iayv~Q~p~L 690 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR--GTVAYVPQVSWI 690 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc--CeEEEEcCcccc
Confidence 46999999999963 3578999999999999999999999999999999999999999 999864 369999999753
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----CccccccCCCCCChHHHHHhhcccc
Q 029133 131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+..+..+++....+ .+++++.++++.+++..+... ...-.-.|.+|||||||||+|||+-
T Consensus 691 ---fngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 691 ---FNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred ---CCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 34566666654332 467888999999998654321 1122234677888999999999974
No 304
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.9e-24 Score=163.77 Aligned_cols=72 Identities=28% Similarity=0.501 Sum_probs=63.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~~ 125 (198)
+.++++++.|+ ..++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 46899999995 457999999999999999999999999999999999999999999987653 2478888
Q ss_pred ccc
Q 029133 126 QHH 128 (198)
Q Consensus 126 q~~ 128 (198)
|++
T Consensus 80 q~~ 82 (173)
T cd03230 80 EEP 82 (173)
T ss_pred cCC
Confidence 875
No 305
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=1.4e-23 Score=204.88 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=106.2
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (198)
..|+++|+++.|+. .+++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|.+.. -...|+|++|++..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~L- 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSWI- 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCcccc-
Confidence 46999999999964 357999999999999999999999999999999999999999987642 23469999999753
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----CccccccCCCCCChHHHHHhhcccc
Q 029133 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+..+..+++.... ..+++++.++++..++.++... ...-.-.|.+|||||||||+|||+-
T Consensus 691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 2456666665433 3567888899998888644321 1122234677888999999999974
No 306
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=7.4e-24 Score=163.87 Aligned_cols=102 Identities=29% Similarity=0.496 Sum_probs=81.4
Q ss_pred EEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeEEEe
Q 029133 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (198)
Q Consensus 56 i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i~~~ 124 (198)
|+++++++.|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999543 36999999999999999999999999999999999999999999998763 247888
Q ss_pred ccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++.. +. .+..+++ +..||| ||+||++||++-
T Consensus 81 ~q~~~~-~~--~tv~~~i-----------------------------~~~LS~-----G~~qrv~laral 113 (178)
T cd03247 81 NQRPYL-FD--TTLRNNL-----------------------------GRRFSG-----GERQRLALARIL 113 (178)
T ss_pred ccCCee-ec--ccHHHhh-----------------------------cccCCH-----HHHHHHHHHHHH
Confidence 886521 11 1222211 566777 999999999864
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=1.3e-23 Score=204.15 Aligned_cols=137 Identities=23% Similarity=0.329 Sum_probs=100.3
Q ss_pred eEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC-c-----------ee
Q 029133 55 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-K-----------VR 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~-~-----------~~ 120 (198)
.|+++||++.|+.. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ . ..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 69999999999643 3699999999999999999999999999999999999999999999942 1 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhC------------------------------------------------------
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCF------------------------------------------------------ 146 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 146 (198)
|+|++|++.. +. .+..+++....
T Consensus 462 Ig~V~Q~~~L-F~--~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPLL-FS--NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEecccccc-hh--ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 8999998642 22 24444433210
Q ss_pred ---CCCcHHHHHHHHHhcCCCcccccCc-----cccccCCCCCChHHHHHhhcccc
Q 029133 147 ---PGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 147 ---~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
...+++++.++++.+++.+.....| .-.-.|.+|||||||||+||++-
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl 594 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 0124567888888888853221111 01123455666999999999874
No 308
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.91 E-value=5e-24 Score=171.14 Aligned_cols=119 Identities=23% Similarity=0.293 Sum_probs=89.6
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCCeEEecCc---------eeEEEeccccCCCCCCCCc
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRIAVFSQHHVDGLDLSSN 137 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p----~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~ 137 (198)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..++|++|++...+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 8999998762 2599999986311222223
Q ss_pred HHHHHH---HhC---CCCcHHHHHHHHHhcCCCc--ccccCccccccCCCCCChHHHHHhhcccc
Q 029133 138 PLLYMM---RCF---PGVPEQKLRAHLGSFGVTG--NLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 138 ~~~~~~---~~~---~~~~~~~~~~~L~~~~l~~--~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
...++. ... .....+++.++++.+++.. ...++++..||| ||||||+||++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~-----G~~qrv~laral 140 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSG-----GMLQRVMIALAL 140 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCH-----HHHHHHHHHHHH
Confidence 222211 111 1112356789999999963 345778888999 999999999875
No 309
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.2e-24 Score=165.32 Aligned_cols=61 Identities=30% Similarity=0.592 Sum_probs=56.5
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
|+++++++.|+ .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46899999995 46799999999999999999999999999999999999999999998755
No 310
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.5e-24 Score=161.34 Aligned_cols=135 Identities=25% Similarity=0.298 Sum_probs=108.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC---------------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--------------- 117 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~--------------- 117 (198)
.|.+.+.++++.|++ ..-.+||||++.|||+++|||.+||||||||+||++.+.|+.|+|.+..
T Consensus 4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 568999999999954 4578999999999999999999999999999999999999999997642
Q ss_pred -----ceeEEEeccccCCCCCCCC----cHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 118 -----KVRIAVFSQHHVDGLDLSS----NPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 118 -----~~~i~~~~q~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
+...|++.|++...+.+.. ++-+.++ ..+++...+.+.++|+.+.++.+..+..+.++|| |++
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSG-----GMq 157 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSG-----GMQ 157 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccch-----HHH
Confidence 1247999999865544332 2222222 2334555677889999999988777888899999 999
Q ss_pred HHHhhccc
Q 029133 186 SRPCFVPR 193 (198)
Q Consensus 186 ~rv~la~~ 193 (198)
||+.||+-
T Consensus 158 QRLQiARn 165 (258)
T COG4107 158 QRLQIARN 165 (258)
T ss_pred HHHHHHHH
Confidence 99999974
No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=7e-24 Score=187.89 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=99.5
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
.+++.++++++ .+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 45799999984 2689999999999999999999999999999999999999999998652 24
Q ss_pred EEEeccccC-CCCCCCCcHHHHHHH----hC-------C-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 121 IAVFSQHHV-DGLDLSSNPLLYMMR----CF-------P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~----~~-------~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
++|++|++. ..+....+...++.. .. . ....+.+.++|+.+++.....++++.+||| |||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gekqr 403 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSG-----GNQQK 403 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCH-----HHHHH
Confidence 899999852 111122233332211 00 0 012346789999999953456889999999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 404 v~lA~al 410 (501)
T PRK10762 404 VAIARGL 410 (501)
T ss_pred HHHHHHH
Confidence 9999874
No 312
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.90 E-value=4.4e-24 Score=171.56 Aligned_cols=115 Identities=28% Similarity=0.323 Sum_probs=88.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce------eEEEeccccCCCCCCCCcHHHHHHHh
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRC 145 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~------~i~~~~q~~~~~~~~~~~~~~~~~~~ 145 (198)
|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|++.... ..++.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHHHHH
Confidence 578999999999999999999999999999999999999999987532 2589999864222 22333332211
Q ss_pred ----CCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 146 ----FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 146 ----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..... .+.+.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----G~~qrv~la~al 129 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSG-----GMKQRVAIARAL 129 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCH-----HHHHHHHHHHHH
Confidence 11121 34578899999997 456788899999 999999999864
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=2.7e-23 Score=171.67 Aligned_cols=129 Identities=25% Similarity=0.325 Sum_probs=93.9
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (198)
..+.|+++++++.. +.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ .++|++|+...
T Consensus 36 ~~~~l~i~nls~~~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~l- 109 (282)
T cd03291 36 DDNNLFFSNLCLVG---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWI- 109 (282)
T ss_pred CCCeEEEEEEEEec---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCcccc-
Confidence 35679999999852 4699999999999999999999999999999999999999999999876 58999998632
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCccccccCCCCCChHHHHHhhcccc
Q 029133 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+. .+..+++.... ......+.+++..+++.... ...++..||| ||+|||+||++-
T Consensus 110 ~~--~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg-----Gq~qrv~lAraL 174 (282)
T cd03291 110 MP--GTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG-----GQRARISLARAV 174 (282)
T ss_pred cc--cCHHHHhhccc-ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH-----HHHHHHHHHHHH
Confidence 22 25555443211 11223344555655553211 1122345666 999999999864
No 314
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=1.8e-23 Score=170.56 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=94.6
Q ss_pred CCeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
...|+++++++.|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4579999999999642 46999999999999999999999999999999999999999999998652 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhh
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
++|++|++.. +. .+..+++... .......+.+++..+++.. ...+.++.+||| ||+||++|
T Consensus 97 i~~v~q~~~l-~~--~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~-----G~~qrl~l 167 (257)
T cd03288 97 LSIILQDPIL-FS--GSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV-----GQRQLFCL 167 (257)
T ss_pred EEEECCCCcc-cc--cHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH-----HHHHHHHH
Confidence 8999998632 22 2333332211 1112233444444444421 122334456666 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 168 aral 171 (257)
T cd03288 168 ARAF 171 (257)
T ss_pred HHHH
Confidence 9874
No 315
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=1.9e-23 Score=205.42 Aligned_cols=136 Identities=23% Similarity=0.307 Sum_probs=107.0
Q ss_pred CCeEEEEeeEEEcC-CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeE
Q 029133 53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i 121 (198)
.+.|+++||++.|+ +++.+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 46899999999995 3467999999999999999999999999999999999999999999998763 248
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
||++|+......++......+.....+. .++++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSG-----GqKQRLsLArAL 1076 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSG-----GMQRKLSVAIAF 1076 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 9999986432233332222222111121 245678999999997 567889999999 999999999864
No 316
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=9.3e-24 Score=196.99 Aligned_cols=136 Identities=24% Similarity=0.308 Sum_probs=109.0
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
--|+++||+|.|+.+ .++|+|+||+|++|+.+|||||+||||||.+.+|-.+|+|++|.|.+++. ..
T Consensus 986 G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred eEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 359999999999843 47999999999999999999999999999999999999999999999763 35
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc------ccCccccccCCCCCChHHHHHhhccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++.|.|+|.. +..+..+++.......+++++.++++..+...-. -|.+++ --|..||||||||+||||+
T Consensus 1066 i~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG-erG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1066 IGLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG-ERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred cceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC-cccCcCCchHHHHHHHHHH
Confidence 9999999853 3446667766553346888898888887764211 123332 3466788899999999997
No 317
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.3e-24 Score=187.80 Aligned_cols=133 Identities=15% Similarity=0.212 Sum_probs=100.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
++.+.+++++.. .+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 346889999732 4899999999999999999999999999999999999999999998652 24
Q ss_pred EEEeccccC-CCCCCCCcHHHHHHHh---C--------CC-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 121 IAVFSQHHV-DGLDLSSNPLLYMMRC---F--------PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
++|++|++. ..+....+...++... . .. ...+.+.++|+.+++..+..++++.+||| |||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gq~qr 404 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSG-----GNQQK 404 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCH-----HHHHH
Confidence 899999852 1111223333332210 0 00 11346789999999953456889999999 99999
Q ss_pred Hhhccccc
Q 029133 188 PCFVPRRD 195 (198)
Q Consensus 188 v~la~~~~ 195 (198)
|+||++--
T Consensus 405 l~la~al~ 412 (501)
T PRK11288 405 AILGRWLS 412 (501)
T ss_pred HHHHHHHc
Confidence 99998753
No 318
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=3.1e-23 Score=182.01 Aligned_cols=131 Identities=25% Similarity=0.331 Sum_probs=97.5
Q ss_pred CCeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCcee-EEEeccccC
Q 029133 53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR-IAVFSQHHV 129 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~-i~~~~q~~~ 129 (198)
.+++.++||++.|++. +++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++... +++ ...
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~---~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAI---SSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEe---ccc
Confidence 4589999999999653 4689999999999999999999999999999999999999999999876532 222 111
Q ss_pred CCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 130 DGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+....++.+++.. ...+.. .+.+.++++.+++. ...++++..||| ||||||+||++.
T Consensus 96 --l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSG-----GQrQRVaLArAL 158 (549)
T PRK13545 96 --LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSS-----GMKSRLGFAISV 158 (549)
T ss_pred --cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCH-----HHHHHHHHHHHH
Confidence 1111233333211 111221 23456789999996 456788999999 999999999864
No 319
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=2e-23 Score=163.64 Aligned_cols=76 Identities=29% Similarity=0.415 Sum_probs=66.9
Q ss_pred CeEEEEeeEEEcCC-----CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCeEEecCc--------
Q 029133 54 PIISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK-------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~G~i~~~~~-------- 118 (198)
+.|+++++++.|++ ..++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++.
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35889999999964 257999999999999999999999999999999999999 999999988653
Q ss_pred eeEEEeccccC
Q 029133 119 VRIAVFSQHHV 129 (198)
Q Consensus 119 ~~i~~~~q~~~ 129 (198)
..++|++|++.
T Consensus 82 ~~i~~~~q~~~ 92 (194)
T cd03213 82 KIIGYVPQDDI 92 (194)
T ss_pred heEEEccCccc
Confidence 24889998753
No 320
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.90 E-value=1.6e-23 Score=161.33 Aligned_cols=73 Identities=36% Similarity=0.704 Sum_probs=63.7
Q ss_pred EEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
|+++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999642 46999999999999999999999999999999999999999999998752 24778
Q ss_pred ecccc
Q 029133 124 FSQHH 128 (198)
Q Consensus 124 ~~q~~ 128 (198)
++|++
T Consensus 81 ~~q~~ 85 (173)
T cd03246 81 LPQDD 85 (173)
T ss_pred ECCCC
Confidence 87764
No 321
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.3e-23 Score=186.65 Aligned_cols=132 Identities=19% Similarity=0.294 Sum_probs=99.4
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------e
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 119 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~ 119 (198)
..++|.++++++ .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 356899999983 1589999999999999999999999999999999999999999988653 2
Q ss_pred eEEEeccccC-CCCCCCCcHHHHHHH------hC---CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 120 RIAVFSQHHV-DGLDLSSNPLLYMMR------CF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 120 ~i~~~~q~~~-~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
.++|++|++. ..+....+...++.. .. ....++.+.++|+.+++.....++++.+||| ||||||+
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----G~kqrl~ 413 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSG-----GNQQKVL 413 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCc-----HHHHHHH
Confidence 4899999742 111222233332210 00 1112345788999999963456889999999 9999999
Q ss_pred hcccc
Q 029133 190 FVPRR 194 (198)
Q Consensus 190 la~~~ 194 (198)
||++-
T Consensus 414 la~al 418 (510)
T PRK15439 414 IAKCL 418 (510)
T ss_pred HHHHH
Confidence 99874
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=183.91 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=100.4
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
.++|+++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..
T Consensus 248 ~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 4589999999875 35899999999999999999999999999999999999999999998752 12
Q ss_pred EEEeccccC---CCCCCCC---cHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 121 IAVFSQHHV---DGLDLSS---NPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 121 i~~~~q~~~---~~~~~~~---~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
++|++|+.. ...+.+. +....+... ..+ ..+..++++++.+++..+..++++.+||| |||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gq~qr 399 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSG-----GNQQK 399 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCc-----HHHHH
Confidence 899999742 1111111 111111111 001 12356788999999954456889999999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++.
T Consensus 400 v~la~al 406 (491)
T PRK10982 400 VIIGRWL 406 (491)
T ss_pred HHHHHHH
Confidence 9999864
No 323
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=8.3e-23 Score=199.82 Aligned_cols=135 Identities=20% Similarity=0.276 Sum_probs=100.2
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
..|+++|+++.|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++.. +
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l-~ 711 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAWI-Q 711 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCccc-c
Confidence 36999999999964 35799999999999999999999999999999999999999999999875 69999999642 2
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----CccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..+..+++.... ..++++..++++..++..+... ...-.-.|.+|||||||||+|||+-
T Consensus 712 --~~Ti~eNI~~g~-~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 712 --NDSLRENILFGK-ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred --CCcHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 346666654322 2344555566665555422211 1111123556666999999999875
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=3.2e-23 Score=203.86 Aligned_cols=136 Identities=23% Similarity=0.320 Sum_probs=106.1
Q ss_pred CCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------eeE
Q 029133 53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----------~~i 121 (198)
..+|+++||++.|++ .+.+++|+||+|++||+++|+||||||||||||+|+|++.|++|+|.+++. ..|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 457999999999964 257999999999999999999999999999999999999999999998762 249
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
||++|+......++......+.....+.. ++.+.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSG-----GqKqRLslA~AL 2085 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSG-----GNKRKLSTAIAL 2085 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99999854322333332222221111221 34567889999996 567899999999 999999999863
No 325
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.90 E-value=1.1e-23 Score=171.16 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=94.2
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEec
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFS 125 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~~ 125 (198)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+++. ..++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 46677764 27899999999999999999999999999999999985 5999988653 1389999
Q ss_pred cccCCCCCCCCcHHHHHHHhC-CC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCF-PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
|++..... .+...++.... .. ...+.+.++++.+++. ...++++..||| ||+|||+||++--
T Consensus 76 q~~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~la~al~ 142 (248)
T PRK03695 76 QQQTPPFA--MPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSG-----GEWQRVRLAAVVL 142 (248)
T ss_pred ccCccCCC--ccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCH-----HHHHHHHHHHHHh
Confidence 98532222 23433332211 11 1245678899999996 456788899999 9999999998753
No 326
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=5.2e-23 Score=168.62 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=86.2
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHH--hC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CF 146 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~ 146 (198)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. +++++|.... ....+..+++.. ..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~~~--~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAGL--SGQLTGIENIEFKMLC 112 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEecccCC--CCCCcHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998764 4566665322 122233333321 11
Q ss_pred CCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 147 PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 147 ~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+.. .+.+..+++.+++. +..++++.+||| ||+|||+||++.
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----Gq~qrv~Laral 158 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSS-----GMRAKLGFSINI 158 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCH-----HHHHHHHHHHHH
Confidence 1222 23345678888886 456788889999 999999999864
No 327
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.6e-23 Score=159.88 Aligned_cols=73 Identities=37% Similarity=0.651 Sum_probs=63.0
Q ss_pred EEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce-----------eEEE
Q 029133 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (198)
Q Consensus 56 i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-----------~i~~ 123 (198)
|+++++++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999543 269999999999999999999999999999999999999999999887631 3677
Q ss_pred ecccc
Q 029133 124 FSQHH 128 (198)
Q Consensus 124 ~~q~~ 128 (198)
++|++
T Consensus 81 ~~~~~ 85 (171)
T cd03228 81 VPQDP 85 (171)
T ss_pred EcCCc
Confidence 77764
No 328
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.7e-23 Score=159.80 Aligned_cols=61 Identities=23% Similarity=0.492 Sum_probs=56.5
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
|.++|+++.|+ +.++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 61 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG 61 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 46899999995 45799999999999999999999999999999999999999999998764
No 329
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=5.5e-24 Score=157.34 Aligned_cols=108 Identities=31% Similarity=0.429 Sum_probs=85.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEEeccccCCCCCCCCcHHH
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLL 140 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~ 140 (198)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|+..... ..+...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 68999999999999999999999999999999999999999988752 25999999843212 223333
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCcc----ccccCCCCCChHHHHHhhcccc
Q 029133 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----YTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~----~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+ ....++.+++..+++.. ..++.+ ..||+ ||||||+||++.
T Consensus 79 ~-------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~-----Ge~~rl~la~al 123 (137)
T PF00005_consen 79 N-------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSG-----GEKQRLALARAL 123 (137)
T ss_dssp H-------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCH-----HHHHHHHHHHHH
T ss_pred c-------ccccccccccccccccc-ccccccccccchhhH-----HHHHHHHHHHHH
Confidence 2 23566788899888753 334444 88888 999999999874
No 330
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.8e-23 Score=161.84 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=83.1
Q ss_pred eEEEEeeEEEcCC---CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCeEEecCc-------eeEE
Q 029133 55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK-------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~G~i~~~~~-------~~i~ 122 (198)
.|+++++++.|++ .+++|+++||+|++|++++|+|||||||||||++|+|++ +|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6889999999953 257999999999999999999999999999999999986 489999998763 2589
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. ....++.+++... ..+. .||| ||+|||+||++-
T Consensus 83 ~~~q~~~~--~~~~tv~~~l~~~----------~~~~--------------~LSg-----Ge~qrv~la~al 123 (192)
T cd03232 83 YVEQQDVH--SPNLTVREALRFS----------ALLR--------------GLSV-----EQRKRLTIGVEL 123 (192)
T ss_pred EecccCcc--ccCCcHHHHHHHH----------HHHh--------------cCCH-----HHhHHHHHHHHH
Confidence 99987532 1223443333210 0000 5777 999999999864
No 331
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=1e-22 Score=167.47 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=103.8
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-C----CCCeEEecCc--------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-P----SSGTVFRSAK-------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-p----~~G~i~~~~~-------- 118 (198)
.++++||+..|... ..+++||||+|.+||++||||.|||||||+.+.|+|+++ | .+|+|.+++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 36899999998532 368999999999999999999999999999999999998 3 5689987763
Q ss_pred -------eeEEEeccccCCCCCCCCcHHHH---HHHhCCCC-----cHHHHHHHHHhcCCCcc--cccCccccccCCCCC
Q 029133 119 -------VRIAVFSQHHVDGLDLSSNPLLY---MMRCFPGV-----PEQKLRAHLGSFGVTGN--LALQPMYTLSGFGCS 181 (198)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~L~~~~l~~~--~~~~~~~~LSG~~ls 181 (198)
..|+|++|++...++...++-.. ....+... ..+++.++|+.++|+.. ..+.++.+|||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG---- 156 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG---- 156 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC----
Confidence 25999999976555544332211 11222211 24578899999999854 56788999999
Q ss_pred ChHHHHHhhccc
Q 029133 182 GGTNSRPCFVPR 193 (198)
Q Consensus 182 ~Ge~~rv~la~~ 193 (198)
||+|||.||-+
T Consensus 157 -GMrQRV~IAma 167 (316)
T COG0444 157 -GMRQRVMIAMA 167 (316)
T ss_pred -cHHHHHHHHHH
Confidence 99999999865
No 332
>PLN03211 ABC transporter G-25; Provisional
Probab=99.89 E-value=4.4e-23 Score=187.62 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=93.1
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCeEEecCc-------eeEEEecccc
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--SGTVFRSAK-------VRIAVFSQHH 128 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~--~G~i~~~~~-------~~i~~~~q~~ 128 (198)
++++++.|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.+++. ..++|++|+.
T Consensus 71 ~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred cccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 445666774 467999999999999999999999999999999999999985 899998764 2489999985
Q ss_pred CCCCCCCCcHHHHHHHh--CC-CCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 129 VDGLDLSSNPLLYMMRC--FP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.....++......+... .+ ... .+.+.++++.+++.. ..+..+.+-...+|||||||||+||++-
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSgGerqRv~ia~aL 221 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEM 221 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hcCceeCCCCCCCcChhhhhHHHHHHHH
Confidence 43222333222222111 11 111 245778999999963 3333332222223344999999999763
No 333
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.89 E-value=3.3e-23 Score=163.12 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=62.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCeEEecCc------------eeE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~--~~p~~G~i~~~~~------------~~i 121 (198)
+.++|+++.|+ +..+|+|+||+|.+|++++|+|+||||||||+++|+|+ ++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 46899999995 46799999999999999999999999999999999999 5899999998652 137
Q ss_pred EEecccc
Q 029133 122 AVFSQHH 128 (198)
Q Consensus 122 ~~~~q~~ 128 (198)
+|++|++
T Consensus 80 ~~v~q~~ 86 (200)
T cd03217 80 FLAFQYP 86 (200)
T ss_pred EEeecCh
Confidence 8888874
No 334
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.9e-23 Score=177.33 Aligned_cols=149 Identities=43% Similarity=0.826 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCCCCCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc
Q 029133 39 DYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118 (198)
Q Consensus 39 ~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~ 118 (198)
.++|.||.+.+. .+|++-+.+|+|.|++.+++|.+++|-|.-..+||||||||.||||||++|.|-+.|..|+..-+-.
T Consensus 571 ~VkF~FPep~~L-~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr 649 (807)
T KOG0066|consen 571 SVKFQFPEPTKL-NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR 649 (807)
T ss_pred EEEEecCCCCCC-CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce
Confidence 456777765443 4678999999999988889999999999999999999999999999999999999999999988888
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+||++.|+....+....++..++.+.+ ..+.+.++..|..|||......-.+..||| ||+.||+||-+.
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSG-----GQKaRValaeLa 719 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSG-----GQKARVALAELA 719 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCC-----cchHHHHHHHHh
Confidence 8999999987666677777777665543 466788999999999976555557888999 999999998653
No 335
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=1.6e-22 Score=184.14 Aligned_cols=134 Identities=21% Similarity=0.288 Sum_probs=104.2
Q ss_pred CeEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
++|+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999531 46999999999999999999999999999999999999999999988652
Q ss_pred ---eeEEEeccccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 119 ---VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++|++|++...... +..+++. ....+ ..++++.++++.+++. +..++++.+||| ||+||++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~--tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~-----Gq~qrv~ 154 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHL--TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSG-----GQQQRVS 154 (648)
T ss_pred HHhccEEEEeCCcccCCCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCH-----HHHHHHH
Confidence 2489999986432222 3222221 11111 1245678899999997 456888899999 9999999
Q ss_pred hccccc
Q 029133 190 FVPRRD 195 (198)
Q Consensus 190 la~~~~ 195 (198)
||++.-
T Consensus 155 LAraL~ 160 (648)
T PRK10535 155 IARALM 160 (648)
T ss_pred HHHHHh
Confidence 998753
No 336
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=6.7e-24 Score=161.54 Aligned_cols=132 Identities=21% Similarity=0.257 Sum_probs=104.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------- 118 (198)
+.+.++|+.++| +...+|++||++...|+++.|||.+|||||||||||.-+..|+.|.|.+++.
T Consensus 5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468999999999 4667999999999999999999999999999999999999999999987652
Q ss_pred ---------eeEEEeccccCCCCCCCCcHHHHHHHhC-------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCC
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSG 182 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~ 182 (198)
.++++++|++..+. -.+++.+..... .....++++.+|..+|+. +..+.++..|||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWs--HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSG----- 155 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWS--HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSG----- 155 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhH--HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCc-----
Confidence 14778888753221 123444433211 112246677899999997 566788999999
Q ss_pred hHHHHHhhcccc
Q 029133 183 GTNSRPCFVPRR 194 (198)
Q Consensus 183 Ge~~rv~la~~~ 194 (198)
||+||++||++.
T Consensus 156 GQQQR~aIARaL 167 (256)
T COG4598 156 GQQQRVAIARAL 167 (256)
T ss_pred hHHHHHHHHHHH
Confidence 999999999874
No 337
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=176.68 Aligned_cols=136 Identities=20% Similarity=0.260 Sum_probs=106.4
Q ss_pred CeEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CCeEEecCc--------
Q 029133 54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSAK-------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~----~G~i~~~~~-------- 118 (198)
++++++||++.|... ..+++||||+|.+||++||||.+||||||+.++|.|++++. +|+|.+++.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999998532 25899999999999999999999999999999999999988 799988762
Q ss_pred -------eeEEEeccccCCCCCCCCcHHHH---HHHhCCC----CcHHHHHHHHHhcCCCcccc-cCccccccCCCCCCh
Q 029133 119 -------VRIAVFSQHHVDGLDLSSNPLLY---MMRCFPG----VPEQKLRAHLGSFGVTGNLA-LQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~L~~~~l~~~~~-~~~~~~LSG~~ls~G 183 (198)
..|+|++|++...++...++-.. ....+.. ...+++.++|+.++|++... ++++.+||| |
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSG-----G 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSG-----G 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCc-----h
Confidence 35999999986555543332221 1222221 23567789999999976443 358999999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|||||.||.+-
T Consensus 159 ~rQRv~iAmAL 169 (539)
T COG1123 159 MRQRVMIAMAL 169 (539)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 338
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=1.4e-22 Score=162.04 Aligned_cols=112 Identities=29% Similarity=0.415 Sum_probs=85.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------eeEEEeccccCCCCCCCCcHHHHHHHh-----
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVDGLDLSSNPLLYMMRC----- 145 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------~~i~~~~q~~~~~~~~~~~~~~~~~~~----- 145 (198)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++........+..+++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999998874 249999998643222233444433211
Q ss_pred --C--C-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 146 --F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 146 --~--~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
. . ....+.+.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~-----G~~qrv~laral 128 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSG-----GQRQRVLVARAL 128 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 0 1 11235688899999997 456778889999 999999999764
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=8.8e-23 Score=166.44 Aligned_cols=126 Identities=23% Similarity=0.253 Sum_probs=91.6
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE-----------ecCc---------
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK--------- 118 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~-----------~~~~--------- 118 (198)
.+|+++|++...+|+++|+ +.+|++++|+|||||||||||++|+|+++|++|+|. +++.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3788999644468999994 999999999999999999999999999999999995 2221
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
..++|++|+... .+. +....+... .....+..+.++++.+++. ...++++.+||| ||||||+||++
T Consensus 83 ~~~~~~i~~~~~~~~~-~~~--~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~-----G~~qrv~lara 153 (255)
T cd03236 83 LEGDVKVIVKPQYVDL-IPK--AVKGKVGELLKKKDERGKLDELVDQLELR-HVLDRNIDQLSG-----GELQRVAIAAA 153 (255)
T ss_pred hhcccceeeecchhcc-Cch--HHHHHHHHHhchhHHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHH
Confidence 125677776422 111 111111111 1112346678999999997 455788889999 99999999986
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
.
T Consensus 154 l 154 (255)
T cd03236 154 L 154 (255)
T ss_pred H
Confidence 4
No 340
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8e-23 Score=154.31 Aligned_cols=132 Identities=21% Similarity=0.299 Sum_probs=101.3
Q ss_pred eEEEEeeEEEcC----C--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC-----------
Q 029133 55 IISFSDASFGYP----G--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----------- 117 (198)
Q Consensus 55 ~i~~~~l~~~y~----~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~----------- 117 (198)
.+.++|++++|- + .-++|.++||++..||.+++-||+|+|||||||+|.+-|.|++|+|.+.-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 577888887763 2 24799999999999999999999999999999999999999999997531
Q ss_pred --------ceeEEEeccccCCCCCCCCcHHH----HHHHh-CC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCCh
Q 029133 118 --------KVRIAVFSQHHVDGLDLSSNPLL----YMMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 118 --------~~~i~~~~q~~~~~~~~~~~~~~----~~~~~-~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G 183 (198)
...|||++|...- -.+...++ .+... .+ .....++..+|.++++++.++..++.++|| |
T Consensus 84 pr~vl~vRr~TiGyVSQFLRv--iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSG-----G 156 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRV--IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSG-----G 156 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHh--ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCC-----c
Confidence 1258999997421 11222222 11111 11 123567789999999999889999999999 9
Q ss_pred HHHHHhhccc
Q 029133 184 TNSRPCFVPR 193 (198)
Q Consensus 184 e~~rv~la~~ 193 (198)
|+|||.||+-
T Consensus 157 EqQRVNIaRg 166 (235)
T COG4778 157 EQQRVNIARG 166 (235)
T ss_pred hheehhhhhh
Confidence 9999999974
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=2.9e-22 Score=159.34 Aligned_cols=114 Identities=11% Similarity=0.164 Sum_probs=78.2
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE-ecCce-eEEEeccccCCCCCCCCcHHHHHH--Hh
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-RSAKV-RIAVFSQHHVDGLDLSSNPLLYMM--RC 145 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~-~~~~~-~i~~~~q~~~~~~~~~~~~~~~~~--~~ 145 (198)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. +++.. .++ +.+. +....+..+++. ..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~---~~~~--l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLG---ANSF--ILPGLTGEENARMMAS 75 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccc---cccc--cCCcCcHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999996 54432 122 2211 111223333221 11
Q ss_pred CCCCcHHHH-HHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 146 FPGVPEQKL-RAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 146 ~~~~~~~~~-~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..+.....+ ..++..+++. ...++++..||| |||||++||++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~lS~-----G~~qrv~la~al 119 (213)
T PRK15177 76 LYGLDGDEFSHFCYQLTQLE-QCYTDRVSEYSV-----TMKTHLAFAINL 119 (213)
T ss_pred HcCCCHHHHHHHHHHHhChh-HHhhchHhhcCH-----HHHHHHHHHHHH
Confidence 112232322 3344556775 345788899999 999999999864
No 342
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=6.3e-22 Score=188.00 Aligned_cols=138 Identities=20% Similarity=0.332 Sum_probs=107.7
Q ss_pred CCCeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------e
Q 029133 52 GPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~ 119 (198)
....|+++|++.+|..+ +.+|++|||+|++||++||||+.|||||||+.+|-++..|.+|+|.+++. .
T Consensus 1135 ~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 34579999999999644 57999999999999999999999999999999999999999999999873 3
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccc------cccCCCCCChHHHHHhhccc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY------TLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSG~~ls~Ge~~rv~la~~ 193 (198)
+++..||+|.. + ..+...++- -....++++++++|+..++..... +.+. .-.|.|+|.||||.|||||+
T Consensus 1215 rlsIIPQdPvL-F--sGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~-~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1215 RLSIIPQDPVL-F--SGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVS-SLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred cCeeeCCCCce-e--cCccccccC-cccccCHHHHHHHHHHhChHHHHh-hCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence 69999999853 2 222221111 112346788999999999864332 2222 23478999999999999997
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 1290 L 1290 (1381)
T KOG0054|consen 1290 L 1290 (1381)
T ss_pred H
Confidence 3
No 343
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=162.87 Aligned_cols=114 Identities=22% Similarity=0.251 Sum_probs=90.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeEEEeccccCCCCCCCCc
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDLSSN 137 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~~~ 137 (198)
=+++|+++...++||.|++|||||||+|+|+|+.+|+.|.|.+++. .+||||+|+...+...+..
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 4788899888899999999999999999999999999999988763 3699999995433333332
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
-...+..+ ......+.++.+.+|+. .+.++.+.+||| ||||||+|+++.
T Consensus 95 gNL~YG~~--~~~~~~fd~iv~lLGI~-hLL~R~P~~LSG-----GEkQRVAIGRAL 143 (352)
T COG4148 95 GNLRYGMW--KSMRAQFDQLVALLGIE-HLLDRYPGTLSG-----GEKQRVAIGRAL 143 (352)
T ss_pred cchhhhhc--ccchHhHHHHHHHhCcH-HHHhhCCCccCc-----chhhHHHHHHHH
Confidence 22222222 22456778899999997 577899999999 999999999874
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=2.4e-22 Score=155.36 Aligned_cols=66 Identities=29% Similarity=0.329 Sum_probs=58.1
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccc
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~ 127 (198)
.|+++.|+ +..+++++ |+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-~i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-TPVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-EEEEEccc
Confidence 47899995 56788884 999999999999999999999999999999999999998753 47888775
No 345
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=3.4e-22 Score=163.53 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=94.1
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------eeEEEeccccCCCCCCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~ 135 (198)
-+.|+||+|+.||+++|.|-+|||||||+|+|.+++.|++|+|.+++. .++++|+|.+.. -+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL--lPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL--LPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc--ccc
Confidence 358999999999999999999999999999999999999999998763 358999998542 233
Q ss_pred CcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 136 SNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 136 ~~~~~~~~~~--~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
.+++++.... ..+. .++++.++|+.+||.. ..++++.+||| |+||||.||++..
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~yp~eLSG-----GMqQRVGLARAla 180 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEG-YADKYPNELSG-----GMQQRVGLARALA 180 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-hhhcCcccccc-----hHHHHHHHHHHHc
Confidence 4555544322 1222 2567889999999975 56889999999 9999999999753
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.87 E-value=9.1e-22 Score=192.17 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=85.7
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 148 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 148 (198)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++.. ++ .++.+++.... .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~l-~~--~Ti~eNI~~g~-~ 512 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSWI-MP--GTIKDNIIFGL-S 512 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCcc-CC--ccHHHHHHhcc-c
Confidence 3589999999999999999999999999999999999999999999876 69999999753 22 36666654221 1
Q ss_pred CcHHHHHHHHHhcCCCcccc-----cC-ccccccCCCCCChHHHHHhhcccc
Q 029133 149 VPEQKLRAHLGSFGVTGNLA-----LQ-PMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 149 ~~~~~~~~~L~~~~l~~~~~-----~~-~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+..+..++++.+++..+.. +. .++ -.|.+|||||||||+||++-
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi~lARAl 563 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARISLARAV 563 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHHHHHHHH
Confidence 23334445555555432211 11 121 22455666999999999874
No 347
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=6.4e-21 Score=181.25 Aligned_cols=137 Identities=24% Similarity=0.350 Sum_probs=111.3
Q ss_pred CCCeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccC
Q 029133 52 GPPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV 129 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~ 129 (198)
..+.+.++|.++.++. ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|++.+++. ++|++|.++
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~pW 592 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQPW 592 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEeccccH
Confidence 4568999999999964 235899999999999999999999999999999999999999999998775 899999975
Q ss_pred CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCcccc-----ccCCCCCChHHHHHhhcccc
Q 029133 130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----LSG~~ls~Ge~~rv~la~~~ 194 (198)
- ...++.+++.-. ...++++.+++++...|..|..--|.++ --|-+|||||||||+|||+-
T Consensus 593 I---~ngTvreNILFG-~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV 658 (1381)
T KOG0054|consen 593 I---QNGTVRENILFG-SPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV 658 (1381)
T ss_pred h---hCCcHHHhhhcC-ccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH
Confidence 2 345566665533 3567899999999999987654333332 33677888999999999974
No 348
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.4e-22 Score=166.98 Aligned_cols=137 Identities=23% Similarity=0.315 Sum_probs=106.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..+.+.+++|.|.+.+++|+++||++++|+.++|+||+|+||||++++|..++++.+|.|.+++. ..||
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 35889999999988889999999999999999999999999999999999999999999998763 2499
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCc-----cccccCCCCCChHHHHHhhccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.+||+.... ..+.+.+.....+..+++++..+++.+.+.+-...-| .-..-|..|||||||||+||+.
T Consensus 341 ~VPQDtvLF---NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 341 IVPQDTVLF---NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred cCcccceeh---hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 999997542 2345555555555667777777777777643221111 1223345677799999999985
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=7.1e-22 Score=156.79 Aligned_cols=119 Identities=29% Similarity=0.361 Sum_probs=87.7
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHH--HHHh
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY--MMRC 145 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~--~~~~ 145 (198)
..++|+||||+|++||.++|||+||||||||||+|+|.++|++|+|.+.++.. ++-.. ...++...+..++ +...
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~--~li~l-g~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA--PLIEL-GAGFDPELTGRENIYLRGL 115 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe--hhhhc-ccCCCcccchHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999877542 11111 1122222222222 1111
Q ss_pred CCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 146 FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 146 ~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
..+ ..++.+.++++..+|. +..++|+.++|- |++.|++++-+..
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSS-----GM~aRLaFsia~~ 163 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSS-----GMYARLAFSVATH 163 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccH-----HHHHHHHHhhhhh
Confidence 222 3356677888888885 677999999999 9999999987654
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=1.1e-20 Score=173.22 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=90.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCCeEEecCceeEEEeccccC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFRSAKVRIAVFSQHHV 129 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~---~p~~G~i~~~~~~~i~~~~q~~~ 129 (198)
..+|.++|+++.|+ +..+|+|+||+|.+|+++||||||||||||||++|+|.. .|++|+|. |++|+..
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~--------~~~Q~~~ 245 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL--------HVEQEVV 245 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE--------EEeccCC
Confidence 45799999999995 567999999999999999999999999999999999974 46667664 4444321
Q ss_pred CCCCCCC-----------------------------------------------cH----HHHHHH---hC-CCCcHHHH
Q 029133 130 DGLDLSS-----------------------------------------------NP----LLYMMR---CF-PGVPEQKL 154 (198)
Q Consensus 130 ~~~~~~~-----------------------------------------------~~----~~~~~~---~~-~~~~~~~~ 154 (198)
..+.+. .. +..+.. .. ....+.++
T Consensus 246 -g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~ 324 (718)
T PLN03073 246 -GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARA 324 (718)
T ss_pred -CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 111000 00 000000 00 01224567
Q ss_pred HHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 155 RAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 155 ~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
.++|..++|.....++++.+||| ||||||+||++.-
T Consensus 325 ~~~L~~lgl~~~~~~~~~~~LSg-----G~k~rv~LA~aL~ 360 (718)
T PLN03073 325 ASILAGLSFTPEMQVKATKTFSG-----GWRMRIALARALF 360 (718)
T ss_pred HHHHHHCCCChHHHhCchhhCCH-----HHHHHHHHHHHHh
Confidence 78889999965556788999999 9999999998753
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-21 Score=151.86 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=100.9
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCeEEecCc------------e
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------V 119 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~G~i~~~~~------------~ 119 (198)
.+++++||...-.+.+.+|+++||+|++||+.+|+||||||||||.++|+|.- .+++|+|.+++. .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 36899999999954348999999999999999999999999999999999985 789999998763 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHh--CC--C---CcHHHHHHHHHhcCCCcccccCcc-ccccCCCCCChHHHHHhhc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FP--G---VPEQKLRAHLGSFGVTGNLALQPM-YTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~--~---~~~~~~~~~L~~~~l~~~~~~~~~-~~LSG~~ls~Ge~~rv~la 191 (198)
.+...+|.|....-++...++..... .. + .....+++.++.+++++..+++.+ ..+|| |||.|..|+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSG-----GEkKR~Eil 156 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSG-----GEKKRNEIL 156 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCc-----chHHHHHHH
Confidence 36666887754333332222221111 11 1 235678899999999987777776 34556 999999887
Q ss_pred cc
Q 029133 192 PR 193 (198)
Q Consensus 192 ~~ 193 (198)
+.
T Consensus 157 Q~ 158 (251)
T COG0396 157 QL 158 (251)
T ss_pred HH
Confidence 64
No 352
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=4.8e-22 Score=149.16 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=103.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------------
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------- 118 (198)
.|+++++++.|+ ...+|-||+|+-+.||.++++||+|+|||||||.|.-+..|.+|+..+.+.
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 488999999994 567899999999999999999999999999999999999999999976541
Q ss_pred -eeEEEeccccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
..+|+++|....+..+ ++..++... ..+ ....++.++|+++.+. +..|+.+-.||| ||+|||+|
T Consensus 81 r~~vgmvfqqy~lwphl--tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsg-----gqqqrvai 152 (242)
T COG4161 81 RRNVGMVFQQYNLWPHL--TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSG-----GQQQRVAI 152 (242)
T ss_pred HHhhhhhhhhhccCchh--HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceeccc-----chhhhHHH
Confidence 2589998875433333 333333221 011 2245677899999997 577899999999 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++.
T Consensus 153 aral 156 (242)
T COG4161 153 ARAL 156 (242)
T ss_pred HHHH
Confidence 9863
No 353
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=9.6e-22 Score=151.33 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=103.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------ee
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~ 120 (198)
+.+.+++|+++|+ +..+++++||+|.+||.-+|||||||||||+|.+|+|--+|+.|++++++. ..
T Consensus 4 ~iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 5789999999995 567899999999999999999999999999999999999999999998772 24
Q ss_pred EEEeccccCCCCCCCCcHHH------------HHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 121 IAVFSQHHVDGLDLSSNPLL------------YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
||.-+|.+.-...++....+ .+........+.++.++|...+|. +..+.+...||- ||||++
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSH-----GqKQwL 156 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSH-----GQKQWL 156 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhcc-----chhhhh
Confidence 66667765322222221111 111122234467899999999997 567889999999 999999
Q ss_pred hhccc
Q 029133 189 CFVPR 193 (198)
Q Consensus 189 ~la~~ 193 (198)
.|+-+
T Consensus 157 EIGMl 161 (249)
T COG4674 157 EIGML 161 (249)
T ss_pred hhhee
Confidence 98754
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=3.5e-21 Score=162.05 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=111.4
Q ss_pred CCCeEEEEeeEEEcCCC----------CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---
Q 029133 52 GPPIISFSDASFGYPGG----------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~----------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--- 118 (198)
..+.++.+++.+.|+-. ..+++++||++++|+.++|||.+|||||||=.+|.+++.+. |+|.+.+.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 45689999999888521 24789999999999999999999999999999999999888 99988652
Q ss_pred -----------eeEEEeccccCCCCCCCCcHHHHHHHh---C-C----CCcHHHHHHHHHhcCCCcccccCccccccCCC
Q 029133 119 -----------VRIAVFSQHHVDGLDLSSNPLLYMMRC---F-P----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFG 179 (198)
Q Consensus 119 -----------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~-~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ 179 (198)
..+-.|+||+.-.++.+.++-..+... + + ...++++.++|..+|+++...++++.++||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG-- 429 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG-- 429 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc--
Confidence 258899999876677766654433221 1 1 123578899999999999889999999999
Q ss_pred CCChHHHHHhhccc
Q 029133 180 CSGGTNSRPCFVPR 193 (198)
Q Consensus 180 ls~Ge~~rv~la~~ 193 (198)
|||||++||++
T Consensus 430 ---GQRQRIAIARA 440 (534)
T COG4172 430 ---GQRQRIAIARA 440 (534)
T ss_pred ---chhhHHHHHHH
Confidence 99999999986
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=3.8e-21 Score=186.73 Aligned_cols=139 Identities=14% Similarity=0.193 Sum_probs=101.1
Q ss_pred CeEEEEeeEEEcC---CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCeEEecCc-------ee
Q 029133 54 PIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~---p~~G~i~~~~~-------~~ 120 (198)
.+++++||++.|+ +.+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ |++|+|.+++. ..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 4689999999984 24579999999999999999999999999999999999997 78999998763 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--CC-CCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|++|+.......+......+... .+ ..+ .+.+.++++.+++. +..++.+++ .|.+|||||||||+||++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~-~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGV-PGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCC-CCCCCCHHHhhHHHHHHH
Confidence 8999997532223332222222111 11 111 34678999999996 456777662 122344499999999975
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 916 L 916 (1394)
T TIGR00956 916 L 916 (1394)
T ss_pred H
Confidence 3
No 356
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=1.5e-21 Score=150.74 Aligned_cols=91 Identities=24% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce------eEEEeccccCCCCCCCCcHHHH
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLY 141 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~------~i~~~~q~~~~~~~~~~~~~~~ 141 (198)
..++|+|+||+|++|++++|+|||||||||||++|. +++|++.+.+.. .++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH---------------
Confidence 356899999999999999999999999999999985 468998765321 1222221
Q ss_pred HHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccccc
Q 029133 142 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 142 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
.++|+.+++.....++++.+||| ||+||++||++.-
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSg-----Gq~qrl~laral~ 103 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSG-----GELQRVKLASELF 103 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCH-----HHHHHHHHHHHHh
Confidence 46889999964446788899999 9999999998743
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=1e-21 Score=176.76 Aligned_cols=125 Identities=21% Similarity=0.241 Sum_probs=93.5
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE-----------ecC-----------
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSA----------- 117 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~-----------~~~----------- 117 (198)
+++++|++...+|++++ ++++|++++|+||||||||||||+|+|+++|++|+|. +++
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 48899964346899999 8999999999999999999999999999999999996 432
Q ss_pred --ceeEEEeccccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 118 --KVRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 118 --~~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
...+++.+|....... +..++.+.+.. ......+.++++.+++. ...++++.+||| ||+|||+||++-
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---~~~~~~~~~~l~~l~l~-~~~~~~~~~LSg-----Ge~qrv~ia~al 227 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK---VDERGKLDEVVERLGLE-NILDRDISELSG-----GELQRVAIAAAL 227 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh---hhHHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 1235666664321111 11233333321 12345688999999996 456899999999 999999999864
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=2.9e-21 Score=143.25 Aligned_cols=132 Identities=27% Similarity=0.440 Sum_probs=101.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecCc---------eeEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK---------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~~---------~~i~ 122 (198)
++.++||+.+.+ +..+|-++||+|.+||++.|+||+||||||||..+.|.+.+. +|++.+++. ..+|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 578899999985 567999999999999999999999999999999999999885 799988763 3599
Q ss_pred EeccccCCCCCC--CCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 123 VFSQHHVDGLDL--SSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 123 ~~~q~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
+++|+......+ ..+....+.....+ .....+..+|++.++++ ..++.+.+||| |||.||+|.+.
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g-~f~~dP~tlSG-----GQrARvaL~R~ 148 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDG-AFHQDPATLSG-----GQRARVALLRA 148 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccch-hhhcChhhcCc-----chHHHHHHHHH
Confidence 999986433223 33322211111111 22455678999999985 45778899999 99999998764
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=9e-21 Score=143.67 Aligned_cols=59 Identities=39% Similarity=0.706 Sum_probs=54.5
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
++++++.|+ +..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~~~~~~~~~-~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~ 60 (157)
T cd00267 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 (157)
T ss_pred eEEEEEEeC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 578999995 45799999999999999999999999999999999999999999998765
No 360
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.2e-20 Score=156.81 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=93.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEecccc-CCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH-VDG 131 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~-~~~ 131 (198)
-..|+++|+.+.|.+...-+.+||++|++||++-|+|.||||||||+++|+|+++|++|+|.+++..- +.+. ..+
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV----~~e~ledY 395 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----SAEQLEDY 395 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC----CCCCHHHH
Confidence 34699999999996544667899999999999999999999999999999999999999999886431 0000 000
Q ss_pred CCCCCcH------HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 132 LDLSSNP------LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 132 ~~~~~~~------~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
..+-..+ ++.+.........+.+..+|.++.+.. ...-.-+++|-.+||-|||+|+++.-
T Consensus 396 R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~-ktsl~d~~fs~~kLStGQkKRlAll~ 461 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAH-KTSLNDGRFSNLKLSTGQKKRLALLL 461 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhh-hhcccCCcccccccccchHHHHHHHH
Confidence 0000001 111111111245788888999888853 22223366777888889999988643
No 361
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=159.64 Aligned_cols=132 Identities=25% Similarity=0.322 Sum_probs=106.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
+..|.++|++..-+++..+++++||.|++|+.+-|.||||||||||+|+|+|+.+--+|+|.......+-|+||.+..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~-- 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYL-- 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCC--
Confidence 468999999999987788999999999999999999999999999999999999999999988877779999999753
Q ss_pred CCCCcHHHHHHHhC--CCCcHHHHHHHHHhcCCCccccc------CccccccCCCCCChHHHHHhhccc
Q 029133 133 DLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~------~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
+ ..+..+.+.... ...+++++.++|..++|.+ +.+ +--..||+ ||||||++||.
T Consensus 468 p-~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~vLS~-----GEqQRlafARi 529 (604)
T COG4178 468 P-QGTLREALCYPNAAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDRVLSG-----GEQQRLAFARL 529 (604)
T ss_pred C-CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhhhcCh-----hHHHHHHHHHH
Confidence 2 224444333221 1256888999999999963 322 12245666 99999999985
No 362
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=5e-21 Score=153.94 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=84.4
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce----------eEEEe-ccccCCCCCCCCcH
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF-SQHHVDGLDLSSNP 138 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~----------~i~~~-~q~~~~~~~~~~~~ 138 (198)
.+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.+++.. .++++ .|.....+++....
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 47899999999999999999999999999999999999999999987632 24433 22222223332211
Q ss_pred HHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 139 LLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 139 ~~~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
-..+....+.. -.++...+.+.+++++ ..+.|+..||- |||+|+.||.+
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~-~lk~~vr~LSl-----GqRmraeLaaa 170 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEG-FLKWPVRKLSL-----GQRMRAELAAA 170 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-hhhhhhhhccc-----hHHHHHHHHHH
Confidence 11111111112 2456677788888874 56789999999 99999999864
No 363
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=4.8e-20 Score=167.11 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=90.6
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecCce--------eEEEeccccCCCCCCCC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV--------RIAVFSQHHVDGLDLSS 136 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~~~--------~i~~~~q~~~~~~~~~~ 136 (198)
.+++|+|+|++|++||.++|+|||||||||||++|+|..+|. +|+|.+++.. .++|++|+......++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 7999988743 47999998643222333
Q ss_pred cHHHHHHHhC--C-C----CcHHHHHHHHHhcCCCcccccCccccc-cCCCCCChHHHHHhhcccc
Q 029133 137 NPLLYMMRCF--P-G----VPEQKLRAHLGSFGVTGNLALQPMYTL-SGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 137 ~~~~~~~~~~--~-~----~~~~~~~~~L~~~~l~~~~~~~~~~~L-SG~~ls~Ge~~rv~la~~~ 194 (198)
.+...+.... + . ....++.++++.+++.+ ..+.++++- .+.+|||||||||+||++-
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 2222222111 1 1 12346889999999974 456676641 0123555999999999864
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=2.9e-19 Score=161.46 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=105.3
Q ss_pred eEEEEeeEEEcCCC----CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCeEEecCc--------e
Q 029133 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------V 119 (198)
Q Consensus 55 ~i~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p---~~G~i~~~~~--------~ 119 (198)
.+.+++++....+. +.+|++||.++++||++||+||+||||||||++|+|.... .+|+|.+++. .
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 46778888776433 6799999999999999999999999999999999999975 7899999983 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
..||+.|+-.....+++.+...+... .+. ..++++++++..+++. .-.+..+++....++|||||+||+||.
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHHHH
Confidence 48999998543334444333333221 121 2257789999999997 567788887666667779999999985
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=1.5e-19 Score=175.68 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=96.9
Q ss_pred eEEEEeeEEEcC------------CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCeEEecCc--
Q 029133 55 IISFSDASFGYP------------GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK-- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~------------~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p--~~G~i~~~~~-- 118 (198)
.+.++||++..+ +.+.+|+|+|++|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998863 123699999999999999999999999999999999999763 7899988752
Q ss_pred ------eeEEEeccccCCCCCCCCcHHHHHHH--hCC-CCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
..++|++|+......++..+...+.. ..+ ..+ .+.+.++++.+++. +..++.++.-...+||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHHHH
Confidence 24899999853322233222222211 111 112 23578899999997 44566653111122444999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||+||++-
T Consensus 1026 kRvsIa~aL 1034 (1470)
T PLN03140 1026 KRLTIAVEL 1034 (1470)
T ss_pred HHHHHHHHH
Confidence 999999753
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=2.3e-19 Score=174.38 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=85.4
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCCeEEecCc----------eeEEEeccccCCCCC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSAK----------VRIAVFSQHHVDGLD 133 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~----~p~~G~i~~~~~----------~~i~~~~q~~~~~~~ 133 (198)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+. .|++|+|.+++. ..++|++|+......
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999986 579999998763 138999997433223
Q ss_pred CCCcHHHHHHHh--CC-----CCcH----HH-HHHHHHhcCCCcccccCcc-----ccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRC--FP-----GVPE----QK-LRAHLGSFGVTGNLALQPM-----YTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~--~~-----~~~~----~~-~~~~L~~~~l~~~~~~~~~-----~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++......+... .+ .... ++ +..+|+.++|.+ ..++++ ..||| ||||||+||++-
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSG-----GerkRvsIA~aL 224 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-TRNTKVGNDFVRGVSG-----GERKRVSIAEAS 224 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-ccCceeCCCcCCCCCc-----ccchHHHHHHHH
Confidence 333222222111 11 1111 22 356899999963 445544 45666 999999999753
No 367
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=141.77 Aligned_cols=133 Identities=25% Similarity=0.318 Sum_probs=95.1
Q ss_pred EEEEeeEEEcC----CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce-----------e
Q 029133 56 ISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------R 120 (198)
Q Consensus 56 i~~~~l~~~y~----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-----------~ 120 (198)
+.+.++.+.|. ..+++|.++|++|..|+++.|+|.||||||||+++|+|.+.|++|+|.+++.. .
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 44555555442 23579999999999999999999999999999999999999999999987631 3
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhC-----CCC----c---HHHHHHHHHhcCCC-cccccCccccccCCCCCChHHHH
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCF-----PGV----P---EQKLRAHLGSFGVT-GNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~----~---~~~~~~~L~~~~l~-~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
++-|+|++........++.+++..+. .+. . ....++.+..+++. ....+.++.-||| ||||-
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSG-----GQRQa 156 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSG-----GQRQA 156 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccc-----hHHHH
Confidence 67789998655444444444332110 111 1 23455667766553 2456788999999 99999
Q ss_pred Hhhccc
Q 029133 188 PCFVPR 193 (198)
Q Consensus 188 v~la~~ 193 (198)
|.|+-+
T Consensus 157 lsL~MA 162 (263)
T COG1101 157 LSLLMA 162 (263)
T ss_pred HHHHHH
Confidence 988654
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=3.7e-19 Score=174.37 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=83.4
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (198)
++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ..|+|++|++.. + ..+..+++....
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~l-~--~~Tv~enI~~~~- 745 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAWI-M--NATVRGNILFFD- 745 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCcc-C--CCcHHHHHHcCC-
Confidence 3568999999999999999999999999999999999999999999874 369999998743 2 345555554321
Q ss_pred CCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhhcccc
Q 029133 148 GVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 148 ~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..+.+++.++++..++.. ...+....+||| ||||||+||++-
T Consensus 746 ~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSG-----GQkqRvaLARAl 797 (1560)
T PTZ00243 746 EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSG-----GQKARVSLARAV 797 (1560)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCH-----HHHHHHHHHHHH
Confidence 122333444444333321 122344455555 999999999874
No 369
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.79 E-value=2.8e-19 Score=150.65 Aligned_cols=100 Identities=24% Similarity=0.280 Sum_probs=75.4
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cH
Q 029133 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PE 151 (198)
Q Consensus 87 lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~ 151 (198)
|+|||||||||||++|+|+++|++|+|.+++. ..++|++|++..... .++.+++.. ...+. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~--~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPH--MTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCC--CcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999999999998763 249999998643222 233333321 11111 13
Q ss_pred HHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 152 QKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 152 ~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+++.++++.+++. ...++++.+||| ||||||+||++.
T Consensus 79 ~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~qRvalaraL 115 (325)
T TIGR01187 79 PRVLEALRLVQLE-EFADRKPHQLSG-----GQQQRVALARAL 115 (325)
T ss_pred HHHHHHHHHcCCc-chhcCChhhCCH-----HHHHHHHHHHHH
Confidence 5678899999996 466888999999 999999999874
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=145.28 Aligned_cols=137 Identities=23% Similarity=0.292 Sum_probs=104.1
Q ss_pred CCeEEEEeeEEEcC---CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCeEEecCc------
Q 029133 53 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------ 118 (198)
Q Consensus 53 ~~~i~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-----~~G~i~~~~~------ 118 (198)
.+.+.++||++.|. +...++++|||+|.+||.+||||.+|||||-..+.|+++++- -+|+|.+++.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 56899999999884 235789999999999999999999999999999999999864 2688887652
Q ss_pred ---------eeEEEeccccCCCCCCCCcHH---HHHHHhCCC----CcHHHHHHHHHhcCCCcc--cccCccccccCCCC
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPL---LYMMRCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGFGC 180 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~L~~~~l~~~--~~~~~~~~LSG~~l 180 (198)
.+|++++|++...++.-.+.- ......+.+ ..++++.++|+.+|+.+. ..+.++.+|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG--- 160 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG--- 160 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc---
Confidence 369999999865444322221 111222333 235778899999999752 34678899999
Q ss_pred CChHHHHHhhcccc
Q 029133 181 SGGTNSRPCFVPRR 194 (198)
Q Consensus 181 s~Ge~~rv~la~~~ 194 (198)
||||||+||-+.
T Consensus 161 --GqRQRVMIAMAL 172 (534)
T COG4172 161 --GQRQRVMIAMAL 172 (534)
T ss_pred --chhhHHHHHHHH
Confidence 999999998653
No 371
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=1.1e-18 Score=169.84 Aligned_cols=121 Identities=23% Similarity=0.212 Sum_probs=85.8
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecCc--------eeEEEeccccCCCCCCCCc
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK--------VRIAVFSQHHVDGLDLSSN 137 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~~~~ 137 (198)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++|++|+......++..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56999999999999999999999999999999999999998 999998763 2489999984332233332
Q ss_pred HHHHHHHhCC--C--------C--cH--------------------------HHHHHHHHhcCCCccc----ccCccccc
Q 029133 138 PLLYMMRCFP--G--------V--PE--------------------------QKLRAHLGSFGVTGNL----ALQPMYTL 175 (198)
Q Consensus 138 ~~~~~~~~~~--~--------~--~~--------------------------~~~~~~L~~~~l~~~~----~~~~~~~L 175 (198)
....+..... + . .+ ..+..+|+.+||.... .+..+..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 2222211100 0 0 00 1245689999996321 23455667
Q ss_pred cCCCCCChHHHHHhhcccc
Q 029133 176 SGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 176 SG~~ls~Ge~~rv~la~~~ 194 (198)
|| ||||||.||.+-
T Consensus 338 SG-----GerkRVsia~aL 351 (1470)
T PLN03140 338 SG-----GQKKRVTTGEMI 351 (1470)
T ss_pred Cc-----ccceeeeehhhh
Confidence 77 999999999753
No 372
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.76 E-value=1.2e-18 Score=163.25 Aligned_cols=134 Identities=22% Similarity=0.325 Sum_probs=105.9
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
..+.++++++.|+....++++++|.|++||..++.|+|||||||++++|+|..+|++|++.+.+. ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 57899999999964333889999999999999999999999999999999999999999998442 239
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
||.||.......++......+.....+ .-.+.+..+|+.+++. ...+++++.+|| |+|+|+++|.+
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySg-----G~kRkLs~aia 712 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSG-----GNKRRLSFAIA 712 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCC-----cchhhHHHHHH
Confidence 999998433334444444433333233 2245678899999997 467899999999 99999988765
No 373
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.76 E-value=3.6e-18 Score=148.99 Aligned_cols=135 Identities=20% Similarity=0.329 Sum_probs=100.1
Q ss_pred CCCCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--e-EEEecc
Q 029133 51 PGPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--R-IAVFSQ 126 (198)
Q Consensus 51 ~~~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~--~-i~~~~q 126 (198)
+...+|++++|++.-+. +..+.+|+||+|+.|+-+.|+||||||||+|||+|+|+.+..+|++....+. + +-|+||
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 34578999999999876 5678899999999999999999999999999999999999999999765443 3 899999
Q ss_pred ccCCCCCCCCcHHHHHHH-------hCCCCcHHHHHHHHHhcCCCccccc-----------CccccccCCCCCChHHHHH
Q 029133 127 HHVDGLDLSSNPLLYMMR-------CFPGVPEQKLRAHLGSFGVTGNLAL-----------QPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSG~~ls~Ge~~rv 188 (198)
.|.. ... +..+.+.. .....+++++...|+.+++.. ... .-...||+ ||+||+
T Consensus 509 rPYm--t~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~h-l~~r~ggld~~~~~dW~dvLS~-----GEqQRL 579 (659)
T KOG0060|consen 509 RPYM--TLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGH-LLEREGGLDQQVDWDWMDVLSP-----GEQQRL 579 (659)
T ss_pred CCCc--ccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhh-HHHHhCCCCchhhccHHhhcCH-----HHHHHH
Confidence 8753 221 22221110 112345677888888887752 221 12355666 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
++||+-
T Consensus 580 a~ARLf 585 (659)
T KOG0060|consen 580 AFARLF 585 (659)
T ss_pred HHHHHH
Confidence 999863
No 374
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.75 E-value=3e-18 Score=146.18 Aligned_cols=129 Identities=20% Similarity=0.305 Sum_probs=93.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
...++..++.+.|+ + +-|+--.=+|..||+++++||||.|||||.++|+|.++|++|. ....+++|=||......
T Consensus 340 ~~lv~y~~~~k~~g-~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~~~ 414 (591)
T COG1245 340 DTLVEYPDLKKTYG-D-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISPDY 414 (591)
T ss_pred ceeeecchheeecC-c-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecCCC
Confidence 34566677777774 2 3344444457788999999999999999999999999999998 55778999999865433
Q ss_pred CCCCcHHHHHHHhCCC-C-cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRCFPG-V-PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~-~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..++...+...... . +.-.-.++++-++|. ...++++.+||| ||.|||+||.+.
T Consensus 415 --~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSG-----GELQRvaIaa~L 470 (591)
T COG1245 415 --DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSG-----GELQRVAIAAAL 470 (591)
T ss_pred --CCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCc-----hhHHHHHHHHHh
Confidence 34444433332211 1 122234788999996 677999999999 999999998653
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=7.5e-18 Score=135.13 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=70.9
Q ss_pred CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHH-HHHhc--------------------CCCCCCCeEEecCceeEEEec
Q 029133 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAG--------------------ELQPSSGTVFRSAKVRIAVFS 125 (198)
Q Consensus 67 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl-k~l~g--------------------~~~p~~G~i~~~~~~~i~~~~ 125 (198)
....+|+++||+|++||+++|+|+||||||||+ .+|.. ++.|..+.+. .....+..
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 82 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE---GLSPAIAI 82 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc---CCCceEEe
Confidence 345689999999999999999999999999995 33321 1112111110 01122333
Q ss_pred cccCCCCCCCCcHH------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+.....+...+.. ..+.............++|..+++.....++++.+||| ||+|||+||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----G~~qrv~laral 152 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSG-----GEAQRIRLATQI 152 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCH-----HHHHHHHHHHHH
Confidence 33221222221211 11111111111223357899999974346788999999 999999999864
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.70 E-value=1.4e-17 Score=130.87 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=72.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC---------eEEecC--------ceeEEEeccccCCCCCCC
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG---------TVFRSA--------KVRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G---------~i~~~~--------~~~i~~~~q~~~~~~~~~ 135 (198)
++++|++.+| +++|+||||||||||+++|+|++.|..| ++.+.+ ...++|++|++...+ .
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~--~ 90 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY--S 90 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce--e
Confidence 6789999999 9999999999999999999999877643 343322 246899999864321 0
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
....+++.++++. . ...++++..||| |||||++||++
T Consensus 91 ------------~~~~~~~~~~l~~---~-~~~~~~~~~LS~-----G~kqrl~la~~ 127 (197)
T cd03278 91 ------------IISQGDVSEIIEA---P-GKKVQRLSLLSG-----GEKALTALALL 127 (197)
T ss_pred ------------EEehhhHHHHHhC---C-CccccchhhcCH-----HHHHHHHHHHH
Confidence 0123466677777 2 345678899999 99999999985
No 377
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.70 E-value=4.3e-17 Score=141.20 Aligned_cols=131 Identities=24% Similarity=0.290 Sum_probs=99.1
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC-C
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL-D 133 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~-~ 133 (198)
-|.++|+-.--+....++..++|+|++|-.+.|+||||||||+|+|+|.|+.+.+.|.........+-|.||.|.... .
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 488899888777667788999999999999999999999999999999999999999998887778999999875321 1
Q ss_pred CCCcH-----HHHHHHhCCCCcHHHHHHHHHhcCCCcccccC---------ccccccCCCCCChHHHHHhhccc
Q 029133 134 LSSNP-----LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ---------PMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 134 ~~~~~-----~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~---------~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++..+ .+.+.+ .+..++++..+|..+.|.. ...+ --..||| |||||+++|+.
T Consensus 561 lRDQIIYPdS~e~~~~--kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~dWkd~Lsg-----GekQR~~mARm 626 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKR--KGYTDQDLEAILDIVHLEH-ILQREGGWDAVRDWKDVLSG-----GEKQRMGMARM 626 (728)
T ss_pred ccceeecCCcHHHHHh--cCCCHHHHHHHHHHhhHHH-HHHhccChhhhccHHhhccc-----hHHHHHHHHHH
Confidence 11110 122222 2566788888888877742 2211 1245666 99999999975
No 378
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=6.1e-17 Score=139.75 Aligned_cols=128 Identities=29% Similarity=0.400 Sum_probs=87.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---eeEEEeccccCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---VRIAVFSQHHVD 130 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---~~i~~~~q~~~~ 130 (198)
.-|.+.+.+..|+ ++.+|++-++++..|.+++|||+||+|||||||+|+. |.|..-.. .+-.+++-. ..
T Consensus 79 ~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~ 150 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QS 150 (582)
T ss_pred cceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hh
Confidence 4688889999995 6789999999999999999999999999999999988 33321100 000111100 01
Q ss_pred CCCCCCcHHHHHHHh---CCCCcHHHHHH-HHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 131 GLDLSSNPLLYMMRC---FPGVPEQKLRA-HLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.++.+....+++... ......+++.. +|..+||++++..+|+.+||| |.|+|++||++-
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSG-----GWrMrlaLARAl 213 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSG-----GWRMRLALARAL 213 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCc-----chhhHHHHHHHH
Confidence 111121222222211 01113344555 899999999999999999999 999999999974
No 379
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.65 E-value=1.7e-15 Score=118.00 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=92.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce-----------eE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-----------~i 121 (198)
..+|++.++.|.|+...+++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.+.. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4579999999999876789999999999999999999999999999999999888878888765431 24
Q ss_pred EEeccccCC----CC--CC--CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 122 AVFSQHHVD----GL--DL--SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 122 ~~~~q~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
.|+.-+-.. .. ++ +... ..+.....+.+.++-+.+++.++++- . =.+..+|- |||+||+||-
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDIdl-~--WRmHkvSD-----GqrRRVQicM 160 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDIDL-R--WRMHKVSD-----GQRRRVQICM 160 (291)
T ss_pred eEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheeccc-e--EEEeeccc-----cchhhhHHHH
Confidence 444332100 00 00 1111 11222223444455567788887752 2 24678999 9999999874
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.65 E-value=1.3e-16 Score=121.38 Aligned_cols=124 Identities=23% Similarity=0.301 Sum_probs=90.6
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce-----------eEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-----------~i~~ 123 (198)
++++++|...- -|-.+|..+..||++-+||||||||||||-.++|+. |-+|+|.+++.. .-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 56777776543 257789999999999999999999999999999985 778999987642 2467
Q ss_pred eccccCCCCCCCCcHHHHHHHhCCCC-cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCFPGV-PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
+.|+....+ ...++.++....++. ....+.++...++++ +...+.+..||| ||-|||-||.
T Consensus 77 LsQqq~p~f--~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSG-----GEWQRVRLAa 138 (248)
T COG4138 77 LSQQQTPPF--AMPVWHYLTLHQPDKTRTELLNDVAGALALD-DKLGRSTNQLSG-----GEWQRVRLAA 138 (248)
T ss_pred HhhccCCcc--hhhhhhhhhhcCchHHHHHHHHHHHhhhccc-chhhhhhhhcCc-----ccceeeEEeE
Confidence 777643222 223333333222322 235567788899997 566788899999 9999998875
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=2.6e-16 Score=136.65 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=92.7
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCC-
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG- 131 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~- 131 (198)
+..+.++++++.|. +..+++|+.|.+.+|++++|+|+|||||||+|++|+|-..|..-++.+ ..+.++....
T Consensus 73 s~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccCCCch
Confidence 34689999999994 678999999999999999999999999999999999999997765532 1111111000
Q ss_pred ---------------------------C-C-CCCcHHHHHHH----hCCCCcHHHHHHHHHhcCCCcccccCccccccCC
Q 029133 132 ---------------------------L-D-LSSNPLLYMMR----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGF 178 (198)
Q Consensus 132 ---------------------------~-~-~~~~~~~~~~~----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~ 178 (198)
. + .....++.... ......+.++..+|..+++...+.++++..|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg- 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG- 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc-
Confidence 0 0 00000011100 011122456778999999998888999999999
Q ss_pred CCCChHHHHHhhccc
Q 029133 179 GCSGGTNSRPCFVPR 193 (198)
Q Consensus 179 ~ls~Ge~~rv~la~~ 193 (198)
|+++|++||++
T Consensus 225 ----GwrmR~aLAr~ 235 (614)
T KOG0927|consen 225 ----GWRMRAALARA 235 (614)
T ss_pred ----hHHHHHHHHHH
Confidence 99999999986
No 382
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=2.6e-15 Score=121.25 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=32.5
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
|+++|.. .|+ +..++.+++ |++++|+|||||||||||++|+++
T Consensus 4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence 3444432 463 455677776 789999999999999999999844
No 383
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=122.87 Aligned_cols=119 Identities=23% Similarity=0.300 Sum_probs=86.3
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCCeEEecCceeEEEeccccCCCCCCCCcHHH
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--------LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 140 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~--------~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~ 140 (198)
..+++|+||+|++|++++|+|+|||||||||++|+|. ++|++|.|.+..+.--+.+|-.....+. ..+.+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tile 474 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILE 474 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHH
Confidence 3688999999999999999999999999999999985 5799998877654422334443332233 345555
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccc-cCccccccCCCCCChHHHHHhhccccc
Q 029133 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLA-LQPMYTLSGFGCSGGTNSRPCFVPRRD 195 (198)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~~~l~~~~~-~~~~~~LSG~~ls~Ge~~rv~la~~~~ 195 (198)
.+... .+ +-..+.++|.++|+.+... .+++.+||- |||-|+-||++-.
T Consensus 475 hl~s~-tG-D~~~AveILnraGlsDAvlyRr~f~ELSt-----GQKeR~KLAklla 523 (593)
T COG2401 475 HLRSK-TG-DLNAAVEILNRAGLSDAVLYRRKFSELST-----GQKERAKLAKLLA 523 (593)
T ss_pred HHhhc-cC-chhHHHHHHHhhccchhhhhhccHhhcCc-----chHHHHHHHHHHh
Confidence 44432 22 2344568999999986543 346788888 9999999998754
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.53 E-value=1.1e-14 Score=115.64 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=74.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhc-CCCCCCCeEEec----------CceeEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGID-LDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRS----------AKVRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~-~Ge~~~lvG~NGsGKSTLlk~l~g-~~~p~~G~i~~~----------~~~~i~ 122 (198)
.|+++|+. .|.+ . .+++|+.. +|++++|+|||||||||||++|++ ++-+..+..... ....|+
T Consensus 5 ~i~l~nf~-~y~~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFRE-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCC-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 47788888 5533 2 56677654 589999999999999999999995 444443333321 123577
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+++|+......... ..+.+.+.+.+ .+...++. ...++++.+||| ||+||++||++-
T Consensus 80 ~~f~~~~~~~~~~r---------~~gl~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~-----G~~~r~~la~al 138 (213)
T cd03279 80 FTFQLGGKKYRVER---------SRGLDYDQFTRIVLLPQGEFD-RFLARPVSTLSG-----GETFLASLSLAL 138 (213)
T ss_pred EEEEECCeEEEEEE---------ecCCCHHHHHHhhhhhhcchH-HHhcCCccccCH-----HHHHHHHHHHHH
Confidence 77776421111100 11333333332 23444443 455778888888 999999998865
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.48 E-value=2.1e-14 Score=116.81 Aligned_cols=107 Identities=21% Similarity=0.163 Sum_probs=70.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCC-CeEEecC--------------ceeEEEeccccCCC-------CCCCCc--
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA--------------KVRIAVFSQHHVDG-------LDLSSN-- 137 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~-G~i~~~~--------------~~~i~~~~q~~~~~-------~~~~~~-- 137 (198)
..+++||||||||||||+++|++++.+.. |++.+.+ ...+++++|++... .....+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 67999999999999999999999998863 4554422 23688888874210 000111
Q ss_pred --HHHHH-HHh-C--CCCcHHHHHHHHHhcCCCc-------------------ccccCccccccCCCCCChHHHHHhhcc
Q 029133 138 --PLLYM-MRC-F--PGVPEQKLRAHLGSFGVTG-------------------NLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 138 --~~~~~-~~~-~--~~~~~~~~~~~L~~~~l~~-------------------~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
..... ... . .....+++.++|+.+++.. +..+.++.+||+ ||+||++||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~-----G~~qr~~la~ 179 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSG-----GQRSLVALSL 179 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCH-----HHHHHHHHHH
Confidence 10000 000 1 1124578889999999852 223467788888 9999999997
Q ss_pred c
Q 029133 193 R 193 (198)
Q Consensus 193 ~ 193 (198)
+
T Consensus 180 a 180 (251)
T cd03273 180 I 180 (251)
T ss_pred H
Confidence 4
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.47 E-value=9.8e-13 Score=113.60 Aligned_cols=139 Identities=22% Similarity=0.344 Sum_probs=105.6
Q ss_pred CCCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------
Q 029133 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (198)
Q Consensus 51 ~~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------ 118 (198)
++.+.+++++|+..-..+...+++|||+|+.||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.+++.
T Consensus 253 pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 45789999999988754456789999999999999999999999999999999999999999998763
Q ss_pred -eeEEEeccccC-CCCCCCCcHHHHHHH-hCC-------C-----CcHHHHHHHHHhcCCCcccccCccccccCCCCCCh
Q 029133 119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR-CFP-------G-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~-~~~-------~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G 183 (198)
..++|+|.+.. ..+-+..+..+++.. .+. + .-.....++++.|++.......++..||| |
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG-----G 407 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG-----G 407 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC-----c
Confidence 25899998842 222223333332211 111 1 12456778999999975555678899999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
.+||+-+|+--
T Consensus 408 NqQK~IlaREl 418 (501)
T COG3845 408 NQQKLILAREL 418 (501)
T ss_pred ceehhhhhhhh
Confidence 99999998753
No 387
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=3.1e-14 Score=116.31 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.2
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l 102 (198)
.|+|++++|+.|..++|+|++|||||||++.+
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 58999999999999999999999999999865
No 388
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=1.5e-15 Score=120.75 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=70.3
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (198)
|+++|.. .|+ +..++++++| ++++|+|||||||||||++|+-.+-.+...+ ....++|+++.......++
T Consensus 6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCCCCCCc
Confidence 5666666 673 5668888887 8999999999999999999983211110000 0123566665532211111
Q ss_pred CcHHH-H--------HHHhCC-CCcHHH----HHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 136 SNPLL-Y--------MMRCFP-GVPEQK----LRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 136 ~~~~~-~--------~~~~~~-~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..... . ...... ...... ..++++.+++. +..++++..||+ ||+||++||++.
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~~~~~lS~-----G~~~r~~la~al 142 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP-KKSWKNISNLSG-----GEKTLSSLALVF 142 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc-cccccchhhcCH-----HHHHHHHHHHHH
Confidence 11000 0 000000 000111 14556777775 445677888888 999999999854
No 389
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=5.4e-13 Score=126.01 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=94.8
Q ss_pred CeEEEEeeEEEc---CCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCeEEecCc--------ee
Q 029133 54 PIISFSDASFGY---PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAK--------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y---~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~--p~~G~i~~~~~--------~~ 120 (198)
.+....|+.+.- ++.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.+++. ..
T Consensus 786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred ceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccc
Confidence 455566666543 134679999999999999999999999999999999999753 24677777763 35
Q ss_pred EEEeccccCCCCCCCCcHHHHHH---HhCCCC---cH-HHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMM---RCFPGV---PE-QKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
+||+.|+-.....+++.+-+.+. +..... ++ +.++++++.+++. +..+.-++ +-|.+||..||+|+.||.
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG-~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVG-LPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhcc-CCCCCCCHHHhceeeEEE
Confidence 89999974332334443333222 221111 22 5688999999996 34444443 555668889999999875
No 390
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.9e-12 Score=113.29 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=100.4
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------e
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 119 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~ 119 (198)
+.+.+++++++..- .++|+||++++||+++|.|-=|||+|-|+++|.|..++.+|+|.+++. .
T Consensus 260 ~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 260 GEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 45678888887432 479999999999999999999999999999999999999999998874 2
Q ss_pred eEEEeccccC-CCCCCCCcHHHHH-----HHhC------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 120 RIAVFSQHHV-DGLDLSSNPLLYM-----MRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 120 ~i~~~~q~~~-~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
.|+|+|.+.. ..+-+..++..++ .... .....+.+.++...+++.....+.++.+||| |.+||
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSG-----GNQQK 409 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSG-----GNQQK 409 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCc-----hhhhh
Confidence 5999998743 1222222222221 1111 1112456778999999987667789999999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|.||+..
T Consensus 410 VvlarwL 416 (500)
T COG1129 410 VVLARWL 416 (500)
T ss_pred HHHHHHH
Confidence 9999753
No 391
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.35 E-value=1.2e-12 Score=103.51 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=59.2
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHh----cCCCCCCCeEEec--------CceeEEEecccc-CCCCCCCC--cHHH
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIA----GELQPSSGTVFRS--------AKVRIAVFSQHH-VDGLDLSS--NPLL 140 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~----g~~~p~~G~i~~~--------~~~~i~~~~q~~-~~~~~~~~--~~~~ 140 (198)
++++.+| +++|+|||||||||||++|+ |...|+.|.+... ....+++++|+. ...+.... +.+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 4566677 99999999999999999994 9999988765311 123588888875 21111111 2222
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
.+.. ..+..+.+.+ ++++..||+ ||+||+.
T Consensus 96 ~~~~----~~~~~~~~~~----------~~~~~~LS~-----G~~~~~~ 125 (204)
T cd03240 96 NVIF----CHQGESNWPL----------LDMRGRCSG-----GEKVLAS 125 (204)
T ss_pred ceee----echHHHHHHH----------hcCccccCc-----cHHHHHH
Confidence 2211 1123333333 567788999 9999743
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.34 E-value=2.9e-12 Score=90.75 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=38.7
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
..+|++++|++++|++++|+||||||||||++++. +|++.+.+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g 44 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVG 44 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEee
Confidence 46899999999999999999999999999999986 78887654
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.3e-12 Score=110.39 Aligned_cols=128 Identities=23% Similarity=0.310 Sum_probs=89.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (198)
-|.++|.+.+- .++.+|.|.|+.|-.|.+++||||||-||||||+-|+...-...- ...+-|+.|+....-..
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp------nIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP------NIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC------CCceEeeeeeeeecCcH
Confidence 48888888877 457799999999999999999999999999999999764322211 12234444443211000
Q ss_pred CC-cH-----------------------------------HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCC
Q 029133 135 SS-NP-----------------------------------LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGF 178 (198)
Q Consensus 135 ~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~ 178 (198)
.. ++ ++.+........+.+++.+|.-+||+.++.++|...+||
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSG- 415 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSG- 415 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCC-
Confidence 00 00 000111111233677889999999999999999999999
Q ss_pred CCCChHHHHHhhcccc
Q 029133 179 GCSGGTNSRPCFVPRR 194 (198)
Q Consensus 179 ~ls~Ge~~rv~la~~~ 194 (198)
|.|+||.||++.
T Consensus 416 ----GWRMRvSLARAL 427 (807)
T KOG0066|consen 416 ----GWRMRVSLARAL 427 (807)
T ss_pred ----ceeeehhHHHHH
Confidence 999999999873
No 394
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.33 E-value=3.1e-12 Score=109.08 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=89.1
Q ss_pred EEcCCCCcceeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCCCCCCC-eEEecCceeEEEeccccCCCCCCCC
Q 029133 63 FGYPGGPILFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLIAGELQPSSG-TVFRSAKVRIAVFSQHHVDGLDLSS 136 (198)
Q Consensus 63 ~~y~~~~~~l~~isl~i~~Ge-----~~~lvG~NGsGKSTLlk~l~g~~~p~~G-~i~~~~~~~i~~~~q~~~~~~~~~~ 136 (198)
+.|++.+..+.++.|.|..|+ ++..+|.||.|||||+++++|.++|++| +|- ...++|=||......+.+.
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p---~lnVSykpqkispK~~~tv 419 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP---VLNVSYKPQKISPKREGTV 419 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc---ccceeccccccCccccchH
Confidence 456655567789999999885 6889999999999999999999999976 332 3568888987654333333
Q ss_pred cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..+..-.-+......+.+.+.++-+.+. ...++.+.+||| ||.|||+||...
T Consensus 420 R~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSg-----gelQRval~KOG 471 (592)
T KOG0063|consen 420 RQLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSG-----GELQRVALALCL 471 (592)
T ss_pred HHHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCc-----hhhHHHHHHHhc
Confidence 3222111111123456677888888886 566889999999 999999998754
No 395
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=4.2e-12 Score=99.91 Aligned_cols=102 Identities=25% Similarity=0.271 Sum_probs=64.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-----Ce----EEecC--ceeEEEeccccCCCCCCCCcHHH
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GT----VFRSA--KVRIAVFSQHHVDGLDLSSNPLL 140 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~-----G~----i~~~~--~~~i~~~~q~~~~~~~~~~~~~~ 140 (198)
++++++++.+| +.+|+|||||||||||.+|.-.+.... |. +...+ ...|.+.+++... .+ +
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~-~~---~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGL-DA---N--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCc-cC---C---
Confidence 46677777776 889999999999999999875433322 11 00001 2245555554321 11 1
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
......+..+.++|.. . ...++++.+||+ |||||++||++.
T Consensus 84 ----~~~~~~~~~~~~~l~~---~-~~~~~~~~~lS~-----G~k~r~~ia~al 124 (198)
T cd03276 84 ----PLCVLSQDMARSFLTS---N-KAAVRDVKTLSG-----GERSFSTVCLLL 124 (198)
T ss_pred ----cCCHHHHHHHHHHhcc---c-cccCCcccccCh-----hHHHHHHHHHHH
Confidence 1111234567777776 3 445778899999 999999998753
No 396
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=8.1e-13 Score=107.27 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
.+++|+|||||||||||.+|++++.+..|++.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r 54 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLR 54 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 49999999999999999999999988777664
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.30 E-value=1.5e-12 Score=111.75 Aligned_cols=124 Identities=23% Similarity=0.274 Sum_probs=75.5
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------------
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------------- 118 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------------- 118 (198)
++.++|+..-+.|..+- ..++|.+++|+|+||.||||.+++|+|.+.|.=|...-...
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45678853322333222 35799999999999999999999999999998876632111
Q ss_pred ---eeEEEeccccCC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 119 ---VRIAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 119 ---~~i~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.++..=+|-... .--+..++-+.+... .......++.+.++|. ..+++.+.+||| ||.|||+||.+
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---de~g~~devve~l~L~-nvl~r~v~~LSG-----GELQr~aIaa~ 227 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKV---DERGKFDEVVERLGLE-NVLDRDVSELSG-----GELQRVAIAAA 227 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhh---hhcCcHHHHHHHhcch-hhhhhhhhhcCc-----hHHHHHHHHHH
Confidence 111111111000 000001111111000 1123456788999996 577899999999 99999999865
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.20 E-value=8.5e-12 Score=98.18 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=39.8
Q ss_pred ceeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------cCCCCCCCeEEecCceeEEEecccc
Q 029133 71 LFKNLNFGIDLDS-RIAMVGPNGIGKSTILKLIA--------GELQPSSGTVFRSAKVRIAVFSQHH 128 (198)
Q Consensus 71 ~l~~isl~i~~Ge-~~~lvG~NGsGKSTLlk~l~--------g~~~p~~G~i~~~~~~~i~~~~q~~ 128 (198)
-+.++||++.+|+ +++|+|||||||||||++|+ |.+.|....+ .++|++|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------~~~~~~~~~ 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------SLPVFENIF 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------cCcCccEEE
Confidence 3568899999996 69999999999999999999 6666653322 355666653
No 399
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.18 E-value=2e-11 Score=106.28 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=42.4
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-eEEecC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFRSA 117 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G-~i~~~~ 117 (198)
.+|++|||+|.+||+++|+|||||||||||+ +|+..|++| +|.+++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg 66 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA 66 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence 5799999999999999999999999999999 788888888 798866
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.18 E-value=4.3e-11 Score=93.97 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=91.4
Q ss_pred eEEEEeeEEEcC---CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CCeEEecC----------
Q 029133 55 IISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSA---------- 117 (198)
Q Consensus 55 ~i~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~----~G~i~~~~---------- 117 (198)
.+.++||+..+. +...+++++|+++..||+-++||.+|||||-..|.|+|..+.. .-...++.
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 466777777663 2335889999999999999999999999999999999987642 11111111
Q ss_pred -----ceeEEEeccccCCCCCCCCcHHHHHHHhC------------CCCcHHHHHHHHHhcCCCc--ccccCccccccCC
Q 029133 118 -----KVRIAVFSQHHVDGLDLSSNPLLYMMRCF------------PGVPEQKLRAHLGSFGVTG--NLALQPMYTLSGF 178 (198)
Q Consensus 118 -----~~~i~~~~q~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~~~l~~--~~~~~~~~~LSG~ 178 (198)
...|++.+|++..-++.+..+-..+.... .+....++-++|+++|+.+ +.+.-++.+|--
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe- 161 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE- 161 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc-
Confidence 12477788886544444432211111111 1344677889999999974 234457788998
Q ss_pred CCCChHHHHHhhcccc
Q 029133 179 GCSGGTNSRPCFVPRR 194 (198)
Q Consensus 179 ~ls~Ge~~rv~la~~~ 194 (198)
||-|+|+||-+-
T Consensus 162 ----GE~QKVMIA~A~ 173 (330)
T COG4170 162 ----GECQKVMIAIAL 173 (330)
T ss_pred ----Ccceeeeeehhh
Confidence 999999888653
No 401
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.18 E-value=1.1e-10 Score=109.83 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=37.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l 102 (198)
+.|++++++. ..|+++||+|+.|++++|+|+||||||||++.+
T Consensus 613 ~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 613 KFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred ceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 4678888751 248999999999999999999999999999875
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.16 E-value=8.8e-11 Score=115.47 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=36.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHH
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILK 100 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk 100 (198)
..+++++++. ..|+++||+|+.|++++|+|+||||||||++
T Consensus 599 ~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 599 GTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 3678887752 2689999999999999999999999999999
No 403
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=2.1e-10 Score=107.82 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHH
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILK 100 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk 100 (198)
+.|++++++. ..|+|+||+|+.|++++|+|+||||||||++
T Consensus 611 ~~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 611 KFLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred ceEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 3688888862 2589999999999999999999999999997
No 404
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=2.1e-10 Score=108.83 Aligned_cols=124 Identities=25% Similarity=0.295 Sum_probs=86.6
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecCc--------eeEEEeccccCCCCCCCCc
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK--------VRIAVFSQHHVDGLDLSSN 137 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~~~~ 137 (198)
..+++|++.-+++|+.+.++||.||||||||+.|+|-.+-. .|+|.+++. ..++|.+|+-.....++..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 46899999999999999999999999999999999987543 467877652 4589998874333334332
Q ss_pred H-HHHHHHh------CCCCcH-H----HHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 138 P-LLYMMRC------FPGVPE-Q----KLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 138 ~-~~~~~~~------~~~~~~-~----~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
. ++...+. .+..++ + ....+++.+|++. -.+..+++=...+.|||||.||.++-.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-~~dT~VGnd~~RGvSGGerKRvsi~E~ 274 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-CADTLVGNDMVRGVSGGERKRVSIGEM 274 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-hccceecccccccccCcccceeeeeee
Confidence 2 2222221 111222 2 2347899999974 456666666666677799999998754
No 405
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.99 E-value=5e-10 Score=89.62 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=53.1
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCCCeEEecCceeEEEeccc
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g-~~~p~~G~i~~~~~~~i~~~~q~ 127 (198)
..+.+|++|++.+|++++|+||||+||||||++|++ .+.+..|...+.....++|++|-
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 468899999999999999999999999999999999 77899999988877778877664
No 406
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=2.5e-09 Score=93.10 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=55.5
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+.+..++++..|..+..+++.++ +|.+|++++|+|+||||||||+++|+++..|+.|.|..
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 456889999999965667888886 99999999999999999999999999999999998765
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.91 E-value=4.2e-10 Score=88.66 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=39.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCCCeEEecCceeEEEeccc
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g-~~~p~~G~i~~~~~~~i~~~~q~ 127 (198)
+-..|+++.+|++++|+|||||||||||++|++ .+.+..|.+.......++|+.|.
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi 75 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRI 75 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEE
Confidence 345577788999999999999999999999993 33344554443333445555543
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.90 E-value=7.6e-10 Score=86.13 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=40.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
.-+.+.++.|+.++|+||||||||||+++|+++++|+.|.|.+..
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 445677899999999999999999999999999999999887654
No 409
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.83 E-value=2.7e-09 Score=84.02 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.7
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
..++++++|+. |++++|+||||||||||||+|+|..
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 35677777665 7999999999999999999999865
No 410
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.81 E-value=9.5e-09 Score=88.19 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=50.4
Q ss_pred CeEEEEeeEEEcCCCCccee-----------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFK-----------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~-----------~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
..+.+++|++.|++.+.+|+ |+++.|.+|++++|+||.|||||||++.|+..+...
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 46899999999987667887 999999999999999999999999999999987543
No 411
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=1.3e-08 Score=81.07 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=42.1
Q ss_pred eeEEEeCC--CEEEEECCCCCcHHHHHHHHhc--CCCCCCCeEEecCceeEEEecccc
Q 029133 75 LNFGIDLD--SRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHH 128 (198)
Q Consensus 75 isl~i~~G--e~~~lvG~NGsGKSTLlk~l~g--~~~p~~G~i~~~~~~~i~~~~q~~ 128 (198)
.++.+..+ .+++|+||||+|||||||.|+. .+ +..|.+.+.....++|++|..
T Consensus 20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~ 76 (213)
T cd03281 20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIF 76 (213)
T ss_pred ceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeee
Confidence 34445555 6899999999999999999983 33 677888777778899998864
No 412
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.73 E-value=1.3e-08 Score=64.87 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=31.1
Q ss_pred eeeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 72 FKNLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 72 l~~isl~i~~-Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
+++.++++.+ |+.+.|+|||||||||||.+|.-.+-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445677775 56999999999999999999877766554
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=1.1e-08 Score=80.80 Aligned_cols=38 Identities=29% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
..++++|++|++..|++++|+||||+|||||+++|+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999844
No 414
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.72 E-value=1.7e-08 Score=87.84 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=53.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
+.+..+.++..+..+..+++++ |+|.+|++++|+|+||+|||||+++|+++..++.|.+..
T Consensus 128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~ 188 (433)
T PRK07594 128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL 188 (433)
T ss_pred CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEE
Confidence 3567777777775566789999 999999999999999999999999999999999986654
No 415
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.69 E-value=3.4e-08 Score=83.11 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=45.7
Q ss_pred eEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 61 l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
+...|..+..+++.+ |.+.+|++++|+|+||+|||||+++|++...|+.|.+..
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~ 102 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL 102 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 333454455689999 999999999999999999999999999999998876643
No 416
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.66 E-value=8e-08 Score=83.60 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=49.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
.+.-+.++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|++..+|+.|.|.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~ 188 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVIS 188 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEE
Confidence 456667777775455677775 99999999999999999999999999999999887653
No 417
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.66 E-value=9.1e-09 Score=78.32 Aligned_cols=43 Identities=33% Similarity=0.368 Sum_probs=32.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
....++.+..+.+++|+|||||||||+++.++...-...|.+.
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~ 53 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATR 53 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3445566666679999999999999999998777666655443
No 418
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.65 E-value=2.7e-08 Score=88.18 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=51.8
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
+.+++..| +...+++++++.+..|+.++|+||||+|||||+++|+|+++|.+|++.+.
T Consensus 187 ~~d~~~v~-Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le 244 (506)
T PRK09862 187 QHDLSDVI-GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALE 244 (506)
T ss_pred ccCeEEEE-CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEe
Confidence 35788888 45568899999999999999999999999999999999999999987654
No 419
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.63 E-value=1.9e-08 Score=79.99 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=26.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
++++.+.+.+ .+.+|+|+|||||||||..|+-.+-
T Consensus 14 ~~~~~i~~~~-g~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 14 YDETEFRPGP-SLNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred cceeEEecCC-CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3555666544 3789999999999999998876653
No 420
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=2.7e-08 Score=86.56 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=39.6
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
+..+++++ |+|.+|++++|+|+||+|||||+++|+|+..|+.+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 35689999 99999999999999999999999999999988853
No 421
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=4.2e-08 Score=85.68 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=43.2
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
..+++++ |.+.+|++++|+|+||+|||||+++|+++..|+.|.|..
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~ 191 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIAL 191 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 4588999 999999999999999999999999999999999998865
No 422
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.62 E-value=3.5e-07 Score=74.41 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
+.|..|++++|+||+|+|||||++.|++......+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f 45 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP 45 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccC
Confidence 47889999999999999999999999998877543
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.62 E-value=9.2e-09 Score=95.56 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=50.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCC-CEEEEECCCCCcHHHHHHHHhcC-CCCCCC-eEEecCceeEEEecccc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGE-LQPSSG-TVFRSAKVRIAVFSQHH 128 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~G-e~~~lvG~NGsGKSTLlk~l~g~-~~p~~G-~i~~~~~~~i~~~~q~~ 128 (198)
.+.++++.+-+-.. .-+-++|+++..+ ++++|+||||+|||||||+|++. +.+..| .|.......++|+.|..
T Consensus 295 ~i~l~~~rhPll~~-~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~ 370 (771)
T TIGR01069 295 KIILENARHPLLKE-PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370 (771)
T ss_pred CEEEccccCceecC-CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence 56676665432111 1133578999877 89999999999999999999998 667777 44333334567776653
No 424
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.61 E-value=4.1e-08 Score=78.28 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=42.0
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCeEEecCceeEEEeccc
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-p~~G~i~~~~~~~i~~~~q~ 127 (198)
..+.++++|++.+ ++++|+||||+|||||||++++..- ...|.........++|++|.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i 76 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRI 76 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeE
Confidence 4578999999887 9999999999999999999976432 22343333334456666553
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=4.2e-07 Score=83.23 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=33.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHH
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl 99 (198)
.|++++.+ .--|+||+.+|+-|-.+||+|-+|||||||+
T Consensus 606 ~L~l~gA~------~nNLkni~v~iPLg~~t~VTGVSGSGKSTLI 644 (935)
T COG0178 606 WLELKGAR------RNNLKNIDVEIPLGVFTCVTGVSGSGKSTLI 644 (935)
T ss_pred eEEEeccc------ccCcccceeecccccEEEEEecCCCCHHHhH
Confidence 57776554 1247999999999999999999999999998
No 426
>PRK08149 ATP synthase SpaL; Validated
Probab=98.55 E-value=1.3e-07 Score=82.28 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=41.8
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CeEEe
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFR 115 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~---G~i~~ 115 (198)
+..+++++ ++|.+|++++|+|+||+|||||+++|+++..++. |.|..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~ 187 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGE 187 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEee
Confidence 45689999 9999999999999999999999999999998886 55543
No 427
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.54 E-value=9.3e-08 Score=78.65 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=32.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
.-++|+||||||||||+++|+|++.|++|+|.+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g 146 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG 146 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence 56899999999999999999999999999998765
No 428
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.53 E-value=1e-07 Score=83.08 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=44.9
Q ss_pred EcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 64 ~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+..+..+++++ |++.+|++++|+|+||+|||||+++|++...|+.|.+..
T Consensus 128 ~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 178 (422)
T TIGR02546 128 PLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL 178 (422)
T ss_pred ccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 343345689999 999999999999999999999999999999999887754
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.52 E-value=6.6e-08 Score=81.06 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=38.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 75 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 75 isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
+++.++.|+.++|+||+|||||||+++|+++++|..+.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 4577889999999999999999999999999999998776643
No 430
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.52 E-value=8.6e-08 Score=75.31 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=26.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999975
No 431
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.51 E-value=1.6e-07 Score=82.03 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=43.9
Q ss_pred CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 67 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.+..+++++ |++.+|++++|+|+||+|||||+++|++...++.|.|...
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~i 197 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALI 197 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEE
Confidence 345689999 9999999999999999999999999999999998877643
No 432
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.50 E-value=1.6e-07 Score=72.73 Aligned_cols=24 Identities=54% Similarity=0.643 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+.+|+||||||||++|..|+-..
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999999986543
No 433
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.50 E-value=9.8e-08 Score=74.17 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=25.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
|++++|+||||||||||+++|++...|
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998765
No 434
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.50 E-value=2.6e-07 Score=80.69 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=67.7
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCeEEecC-----------------ceeEEEe-----c
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSA-----------------KVRIAVF-----S 125 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~~~~-----------------~~~i~~~-----~ 125 (198)
..+++++ |+|.+|++++|+|+||+|||||+++|+++.++. .|.|...+ ....+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3577887 999999999999999999999999999988543 34444311 0123344 6
Q ss_pred cccCCCCCCCC---cHHHHHHHhCCC-----CcHHHHHHHHHhcCCC----cccccCccccccC
Q 029133 126 QHHVDGLDLSS---NPLLYMMRCFPG-----VPEQKLRAHLGSFGVT----GNLALQPMYTLSG 177 (198)
Q Consensus 126 q~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~L~~~~l~----~~~~~~~~~~LSG 177 (198)
|++...+.... ...+.+...... .+..++.+++..+++. +.....+++.+|-
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~ 294 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH
Confidence 65432222111 112222211111 2357788999999994 3445677777774
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=6e-08 Score=85.47 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=41.9
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEecccc
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 128 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~ 128 (198)
++++.++.+..|.+++||||||+||||++..|++.+.+..|.. +|+++.++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------kV~LI~~Dt 296 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------KVALLTTDS 296 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------eEEEEeCCc
Confidence 4556677788899999999999999999999999887776642 456666664
No 436
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.49 E-value=1.5e-07 Score=81.64 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=47.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
+.-..++..|..+..+++.+ |++.+|++++|+|+||+|||||+++|+++..|+.+.+.
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~ 169 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVG 169 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 33344555554345688888 99999999999999999999999999999999876553
No 437
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.49 E-value=1.6e-07 Score=81.53 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=45.6
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
..++..+..+..+++ .+|+|.+|++++|+|+||+|||||+++|+++..|+.|.|..
T Consensus 118 ~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~ 173 (418)
T TIGR03498 118 ARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIAL 173 (418)
T ss_pred cCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 334444434445654 69999999999999999999999999999999999987754
No 438
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.48 E-value=1.1e-07 Score=73.49 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+|++++|+|+||||||||+++|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999999877
No 439
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.47 E-value=9.9e-08 Score=76.61 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=30.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
.+..+++|+||||||||||+++|++++.+.+|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 3467999999999999999999999999999974
No 440
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=2.2e-07 Score=74.43 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
...+.+|+++++.++++++|+||||+||||||++++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 346889999999999999999999999999999975
No 441
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.47 E-value=2.3e-07 Score=80.55 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=45.4
Q ss_pred EEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 62 ~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
+..|..+..+++++ |++.+|++++|+|+||+|||||+++|++...++.|.|..
T Consensus 118 ~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~ 170 (413)
T TIGR03497 118 RDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIAL 170 (413)
T ss_pred hhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEE
Confidence 33443445688999 999999999999999999999999999999999887653
No 442
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=8.4e-08 Score=83.27 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=35.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCCeEEecCceeEEEeccc
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~----~p~~G~i~~~~~~~i~~~~q~ 127 (198)
+..|++++||||||+||||+++.|++.+ .+..+.+......+++++.|.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL 240 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL 240 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH
Confidence 4789999999999999999999998853 344444433444556666664
No 443
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.46 E-value=1.8e-07 Score=81.87 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=41.8
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
+..+++.+ |.|.+|++++|+|+||+|||||+++|++...|+.|.+.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~ 195 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIA 195 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEE
Confidence 45688999 99999999999999999999999999999999887654
No 444
>PRK05922 type III secretion system ATPase; Validated
Probab=98.45 E-value=3.3e-07 Score=79.75 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=41.3
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
+..+++.+ ++|.+|++++|+|+||+|||||+++|++..+++.|.+..
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~l 190 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIAL 190 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEE
Confidence 34466665 999999999999999999999999999999999987743
No 445
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.45 E-value=1e-07 Score=75.32 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
++|++++|+||||||||||+++|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999999999875
No 446
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.40 E-value=5.6e-07 Score=70.45 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=48.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHH
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLG 159 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~L~ 159 (198)
+++|+||||||||||.++|++++ ..+.+ .+++.+.. .............. ..+ ..+.+.+.+.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~--------~v~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV--------VIISQDSY-YKDLSHEELEERKNNNYDHPDAFDFDLLISHLQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe--------EEEEeccc-ccccccccHHHhccCCCCCCCcccHHHHHHHHH
Confidence 58999999999999999999987 23333 23333321 11111111111100 011 123445567777
Q ss_pred hcCCCcccccCccccccCCCCCChHHHHH
Q 029133 160 SFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 160 ~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
.+.... ....|....|. |++++.
T Consensus 70 ~l~~~~-~~~~p~~d~~~-----~~~~~~ 92 (198)
T cd02023 70 DLKNGK-SVEIPVYDFKT-----HSRLKE 92 (198)
T ss_pred HHHCCC-CEecccccccc-----CcccCC
Confidence 776643 44667777777 776543
No 447
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.39 E-value=3.8e-07 Score=79.71 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=38.0
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
+..+++.+ |+|.+|++++|+|+||+|||||+++|+++..|+
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45688999 999999999999999999999999999998876
No 448
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.38 E-value=3.5e-07 Score=90.75 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=44.0
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
+...++.+.+. ....|+|++|+|++|++++|+|+||||||||+..+ ++. .|++.+..
T Consensus 936 l~~~~i~i~~~-~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e 992 (1809)
T PRK00635 936 PVPADITIKNA-YQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE 992 (1809)
T ss_pred cccceEEEecc-ccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence 34556776763 33568999999999999999999999999987766 332 78886543
No 449
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.37 E-value=4.3e-07 Score=79.01 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=35.9
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
..+++.+ |+|.+|++++|+|+||+|||||+++|++...++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 3466777 999999999999999999999999999988775
No 450
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.37 E-value=2.5e-07 Score=76.79 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC--CCCCeEE
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ--PSSGTVF 114 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~--p~~G~i~ 114 (198)
-.++||.|+||||||||+++|.+++. |.+|.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~ 96 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVE 96 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceE
Confidence 46899999999999999999999987 7777764
No 451
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.34 E-value=4.7e-07 Score=70.11 Aligned_cols=34 Identities=44% Similarity=0.617 Sum_probs=26.8
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++++++++.+| +++|+||||+||||+|.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 47778888775 99999999999999998875443
No 452
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.33 E-value=5.6e-07 Score=69.23 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
|++++|+||||||||||++.|+..+.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999987654
No 453
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=5.7e-07 Score=78.38 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=44.3
Q ss_pred eEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 61 l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
++..+..+..+++++ +++.+|++++|+|+||+|||||+++|++...++.+.|..
T Consensus 137 i~~~l~tgi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~ 190 (434)
T PRK08472 137 IDEVFSVGVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVAL 190 (434)
T ss_pred cceeccchhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEe
Confidence 343443234578999 999999999999999999999999999998888776653
No 454
>PLN02796 D-glycerate 3-kinase
Probab=98.32 E-value=1.7e-07 Score=79.26 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=34.4
Q ss_pred cceeeeeEEE---eCCCE-----EEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 70 ILFKNLNFGI---DLDSR-----IAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 70 ~~l~~isl~i---~~Ge~-----~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.+++.+++.+ ++|+. ++|+|+||||||||++.|.+++.+.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4677788776 56776 9999999999999999999999875
No 455
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.29 E-value=1e-06 Score=76.76 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
+..+++++ |++.+|++++|+|+||+|||||+++|++...++-
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 34588999 9999999999999999999999999999998864
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=3.9e-07 Score=84.05 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=36.4
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
++++.++.+.+|++++||||||+||||++..|++.+....|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 56778888888999999999999999999999999876666
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=98.29 E-value=7.2e-07 Score=76.26 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=45.8
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------eeEEEeccc
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQH 127 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------~~i~~~~q~ 127 (198)
++.+.-.|.+|++++|+|+||+|||||+++|+|...|+.|+|..... ..+.+++|.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~ 248 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG 248 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC
Confidence 34455557889999999999999999999999999999999986542 246777765
No 458
>PRK15494 era GTPase Era; Provisional
Probab=98.28 E-value=5.9e-07 Score=76.33 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=46.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCC-------EEEEECCCCCcHHHHHHHHhcCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDS-------RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge-------~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+++.++++.|+.....++.++++++.|+ .++|+|+.|+|||||++.|.|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 18 DTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred ccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 46778889999766678999999999999 99999999999999999998864
No 459
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=7.2e-07 Score=77.89 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=38.2
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CeEEec
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRS 116 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~---G~i~~~ 116 (198)
+++.+ |+|.+|++++|+|+||+|||||+++|+++.+|+. |.|...
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Iger 212 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGER 212 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEEC
Confidence 44444 9999999999999999999999999999999985 656443
No 460
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.28 E-value=1.1e-06 Score=86.45 Aligned_cols=44 Identities=27% Similarity=0.327 Sum_probs=37.4
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
|.+..|++.+| +++|+|+|||||||+|++|++++.|..|.+.++
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~ 61 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEEC
Confidence 34557788775 999999999999999999999999998877544
No 461
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.28 E-value=4.5e-07 Score=72.52 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
++||.|+||||||||++.|++++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999875
No 462
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.28 E-value=1.2e-06 Score=77.80 Aligned_cols=53 Identities=32% Similarity=0.492 Sum_probs=44.7
Q ss_pred eEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCeEEe
Q 029133 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVFR 115 (198)
Q Consensus 61 l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~---g~~~p~~G~i~~ 115 (198)
+...+ +...+++|+.+.+ ++.+++|.||+||||||+.+.|+ |+...++|.++.
T Consensus 265 ~A~~~-g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR 320 (512)
T PRK13477 265 IAVRC-GSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR 320 (512)
T ss_pred EEEEe-CCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence 34456 4567999999988 88999999999999999999999 777778888864
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.27 E-value=7.7e-07 Score=68.41 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|.+++|+||||||||||++.|++.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999764
No 464
>PRK06820 type III secretion system ATPase; Validated
Probab=98.25 E-value=1.4e-06 Score=76.06 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=42.3
Q ss_pred eEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 61 l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
++-.+..+..+++.+ +++.+|++++|+|+||+|||||+++|++...|+.+
T Consensus 143 ~~~~l~TGi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~ 192 (440)
T PRK06820 143 IEQMLTTGIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVM 192 (440)
T ss_pred chhhccCCCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEE
Confidence 333443345688999 99999999999999999999999999999988764
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=6.9e-07 Score=75.22 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=33.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+|++++|+||||+||||++..|++.+.+..++|.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLL 147 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEE
Confidence 578999999999999999999999999988888864
No 466
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.24 E-value=8.6e-07 Score=73.14 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=28.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
+++|+|+||||||||+++|++++.+..+.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 48999999999999999999999988776543
No 467
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.24 E-value=8.5e-07 Score=70.44 Aligned_cols=29 Identities=45% Similarity=0.655 Sum_probs=23.8
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l 102 (198)
+.+.+.+.+ ..++|+||||+|||||+.+|
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi 44 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAI 44 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHH
Confidence 345555544 69999999999999999999
No 468
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=1.7e-06 Score=69.11 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.6
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
...+-+|++|++.+|++++|+||||+|||||+++++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 34688999999999999999999999999999999765
No 469
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.21 E-value=2.1e-06 Score=65.12 Aligned_cols=29 Identities=45% Similarity=0.800 Sum_probs=26.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC----CCCCCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE----LQPSSG 111 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~----~~p~~G 111 (198)
-+++|+|+||||||||++.|.+. +.|+.|
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 45999999999999999999997 568888
No 470
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=2.4e-06 Score=84.09 Aligned_cols=35 Identities=37% Similarity=0.782 Sum_probs=29.8
Q ss_pred CCEEEEECCCCCcHHHHHHHH----hcCCCCC-CCeEEec
Q 029133 82 DSRIAMVGPNGIGKSTILKLI----AGELQPS-SGTVFRS 116 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l----~g~~~p~-~G~i~~~ 116 (198)
..+++|+|||||||||+|.+| .|..+|. .|.+++.
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~ 67 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVH 67 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEec
Confidence 359999999999999999999 5999996 6776553
No 471
>PRK00098 GTPase RsgA; Reviewed
Probab=98.21 E-value=1.6e-06 Score=72.39 Aligned_cols=35 Identities=29% Similarity=0.532 Sum_probs=32.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.|.+++|+|+||+|||||++.|+|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58999999999999999999999999999999864
No 472
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.21 E-value=1.1e-06 Score=67.99 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=28.3
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+|+++++..+++ +++|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~-ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEA-KILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCC-EEEEECCCCCCHHHHHHHHhc
Confidence 577888887665 459999999999999999988
No 473
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.19 E-value=9.7e-07 Score=78.50 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=45.5
Q ss_pred CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 67 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
+...+++.+++.+..|+.+.|+||||+|||||++.|.++++|.+|++.+..
T Consensus 196 Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~ 246 (499)
T TIGR00368 196 GQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIET 246 (499)
T ss_pred CcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEec
Confidence 345678999999999999999999999999999999999999999876543
No 474
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.18 E-value=2.1e-06 Score=69.07 Aligned_cols=50 Identities=28% Similarity=0.327 Sum_probs=38.1
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCCeEEe
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI-LKLIAGELQPSSGTVFR 115 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTL-lk~l~g~~~p~~G~i~~ 115 (198)
+.++++.+.++++ +++|+++.|+|+|||||||| +++++++.++....+++
T Consensus 8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi 58 (230)
T PRK08533 8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYV 58 (230)
T ss_pred EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4556676666432 78999999999999999999 69999887665444443
No 475
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.18 E-value=1.8e-06 Score=67.69 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=28.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.++|+|+||+|||||++.|+|...+++|.+...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 489999999999999999999988887766543
No 476
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.17 E-value=1.5e-06 Score=72.11 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=34.7
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 74 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+...+. +.+++++|+||+|||||++.|.|...++.|++..
T Consensus 154 ~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 154 ELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred HHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 3334444 5899999999999999999999999999998864
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.17 E-value=1.7e-06 Score=68.25 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++.+++|+|+||||||||.+.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999987
No 478
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.14 E-value=1.1e-06 Score=75.70 Aligned_cols=109 Identities=24% Similarity=0.266 Sum_probs=67.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--eEEEecc----cc-----CCCCCCCCc--HHHHHHHh
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIAVFSQ----HH-----VDGLDLSSN--PLLYMMRC 145 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~--~i~~~~q----~~-----~~~~~~~~~--~~~~~~~~ 145 (198)
-++|++.++||-||.||||-+++++|-.+|.-|.......+ .++|+.- +. ...+..... ..+.+.+.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 46899999999999999999999999999988866432222 1333311 10 000100000 01111110
Q ss_pred C---------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 146 F---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 146 ~---------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
. ...+.....+++..+.|. ...++-+..||| ||-||.+||..
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~lsg-----gelqrfaia~~ 227 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLN-NLLDREVEQLSG-----GELQRFAIAMV 227 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHh-hHHHhhhhhccc-----chhhhhhhhhh
Confidence 0 011223455778888886 456788999999 99999998864
No 479
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.12 E-value=3e-06 Score=64.40 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
++.+++++|++|+|||||++.|.+......|+|.-
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~ 68 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE 68 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence 45899999999999999999999998877788754
No 480
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.10 E-value=9.7e-07 Score=68.60 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=31.4
Q ss_pred EEEECCCCCcHHHHHHHHh-cCCCCCCCeEEecCceeEEEeccc
Q 029133 85 IAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 85 ~~lvG~NGsGKSTLlk~l~-g~~~p~~G~i~~~~~~~i~~~~q~ 127 (198)
++|+||||+|||||||.++ ..+.+..|.........++|+.+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i 45 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI 45 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE
Confidence 6799999999999999998 444455665555555566666553
No 481
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.07 E-value=2.7e-06 Score=70.05 Aligned_cols=44 Identities=30% Similarity=0.503 Sum_probs=33.8
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
++++++.|++.. ++.+ +|++++|+|+||+|||||+++|++.+..
T Consensus 58 ~~~l~~~~~~~~-~~~~------~~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 58 LEDMSSHFNTEN-VFEK------EVQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred hcccEEeeCCcc-cccC------CCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 677777774322 3332 7799999999999999999999988654
No 482
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=5.3e-06 Score=72.45 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=34.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 74 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
|.-|++.+|++++|+|+||+|||||+++|++...|+.
T Consensus 150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 5668999999999999999999999999999998874
No 483
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.05 E-value=7.4e-06 Score=75.30 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=34.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCC-EEEEECCCCCcHHHHHHHH
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDS-RIAMVGPNGIGKSTILKLI 102 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge-~~~lvG~NGsGKSTLlk~l 102 (198)
.|.++|+...++ . +.++|+..+|. +++|+||||+||||||++|
T Consensus 5 ~l~l~nf~~~~~-~----~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 5 QLTLENFGPYRG-R----QTFDLSPSSPKPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred EEEEeceEEEcC-C----ceeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence 477888887663 2 46688887765 8999999999999999987
No 484
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.05 E-value=6.8e-06 Score=79.24 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=36.3
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEE---eCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGI---DLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i---~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.|.++|+.-.. +. ..|+|+. ..+.+++|+|||||||||+|.+|+..
T Consensus 5 ~l~~~nf~s~~-~~----~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~a 53 (1047)
T PRK10246 5 SLRLKNLNSLK-GE----WKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLA 53 (1047)
T ss_pred EEEeecceeEc-CC----ceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 47788887554 22 3579984 45899999999999999999999843
No 485
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.05 E-value=1.7e-06 Score=66.64 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=28.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHh---cCCCCCCCeEE
Q 029133 82 DSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVF 114 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~---g~~~p~~G~i~ 114 (198)
..+++|+|++||||||+.+.|+ |+..++.|.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 4689999999999999999999 88888877654
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=3e-06 Score=72.65 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=33.8
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.++++.++.+..|.+++|+||||+||||++..|++.+..
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999886543
No 487
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.03 E-value=3.7e-06 Score=70.58 Aligned_cols=38 Identities=37% Similarity=0.593 Sum_probs=32.7
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
-|.+.+++..+++.+.||||||+||||+|.+|-..+.+
T Consensus 13 ~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~ 50 (440)
T COG3950 13 CFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNK 50 (440)
T ss_pred hhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHh
Confidence 36788999999999999999999999999988665544
No 488
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.03 E-value=2.5e-06 Score=71.24 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=36.2
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
.+|+++++....+.+++|+|++|||||||+..|+..+....
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~ 62 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRG 62 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 47889999999999999999999999999999998765543
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.03 E-value=5.2e-06 Score=71.03 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=26.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.++..++|+|||||||||+|++|++.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58899999999999999999999998853
No 490
>PRK00064 recF recombination protein F; Reviewed
Probab=98.02 E-value=1.2e-05 Score=68.88 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=30.6
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
-++++++++.+| +.+|+|||||||||||.+|..+..
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 356788888876 999999999999999999986543
No 491
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.02 E-value=1.1e-05 Score=57.72 Aligned_cols=35 Identities=37% Similarity=0.679 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC-CeEEe
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFR 115 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~-G~i~~ 115 (198)
.+..+.|+||+|+||||+++.|+..+.... +-+++
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 367899999999999999999999887765 33433
No 492
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=3.5e-06 Score=62.78 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=25.3
Q ss_pred EEEECCCCCcHHHHHHHHh--cCCCCCCCeE
Q 029133 85 IAMVGPNGIGKSTILKLIA--GELQPSSGTV 113 (198)
Q Consensus 85 ~~lvG~NGsGKSTLlk~l~--g~~~p~~G~i 113 (198)
++|+|++|||||||++.|+ +...+.+|++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~ 32 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP 32 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence 7899999999999999999 7777777664
No 493
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.99 E-value=8.1e-06 Score=64.27 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
+++|+||||||||||++.+.+.+.+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~ 30 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ 30 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc
Confidence 6899999999999999999999887655
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.99 E-value=6.4e-06 Score=64.61 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=31.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCeEEecC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSA 117 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~~~~ 117 (198)
++|.+++|+|+||||||||.+.|++.+.+. .|.+.+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 568899999999999999999999987654 35677764
No 495
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=8.4e-06 Score=67.27 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=27.6
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++++.+.+.+| .++|+|||||||||+|.+|+=+
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~~ 44 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALSLL 44 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 346677777665 8999999999999999988643
No 496
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.96 E-value=8.3e-06 Score=73.36 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=29.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
-+++|.||||||||||++.|++++ |..|.|..++
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDd 99 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDN 99 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcc
Confidence 379999999999999999999997 5677777654
No 497
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.96 E-value=7e-06 Score=60.79 Aligned_cols=26 Identities=46% Similarity=0.853 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.++|+||+|||||||++.|+..+++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999987654
No 498
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.95 E-value=5e-06 Score=61.30 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 029133 85 IAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 85 ~~lvG~NGsGKSTLlk~l~g~ 105 (198)
++|+|++|||||||++.|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999997
No 499
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.95 E-value=8.9e-06 Score=63.90 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCeEEe
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFR 115 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~~ 115 (198)
.+.|+||+||||||+++.|++.+.+. .|.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t 35 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILT 35 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEE
Confidence 68999999999999999988888754 566543
No 500
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.95 E-value=1e-05 Score=68.78 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=34.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
+..+.-+.|+|++|||||||++.|++.++++.+.+.+..
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 567888999999999999999999999999888776544
Done!