Query 029133
Match_columns 198
No_of_seqs 225 out of 2596
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 3E-31 1E-35 217.3 15.1 134 54-194 6-158 (275)
2 2pcj_A ABC transporter, lipopr 100.0 3E-31 1E-35 211.3 12.7 132 54-194 3-155 (224)
3 3tif_A Uncharacterized ABC tra 100.0 2.8E-31 9.4E-36 213.0 11.8 133 55-194 1-160 (235)
4 2olj_A Amino acid ABC transpor 100.0 1.3E-30 4.4E-35 212.3 14.8 132 54-194 23-174 (263)
5 4g1u_C Hemin import ATP-bindin 100.0 1.5E-30 5.2E-35 212.2 14.6 133 53-194 9-156 (266)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 6.3E-31 2.2E-35 222.1 12.7 132 54-194 3-153 (359)
7 1sgw_A Putative ABC transporte 100.0 1.5E-30 5.2E-35 205.9 13.9 131 53-194 8-148 (214)
8 1z47_A CYSA, putative ABC-tran 100.0 1.3E-30 4.6E-35 220.0 14.2 135 52-194 11-160 (355)
9 2ihy_A ABC transporter, ATP-bi 100.0 5.2E-31 1.8E-35 216.3 11.4 136 52-194 18-176 (279)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-30 3.9E-35 211.8 12.8 133 53-194 13-161 (256)
11 3tui_C Methionine import ATP-b 100.0 9.2E-31 3.1E-35 221.3 12.6 135 52-194 21-178 (366)
12 1b0u_A Histidine permease; ABC 100.0 2.2E-30 7.7E-35 210.8 14.5 132 54-194 5-168 (262)
13 3rlf_A Maltose/maltodextrin im 100.0 1.5E-30 5.1E-35 221.2 13.4 131 55-194 3-148 (381)
14 1ji0_A ABC transporter; ATP bi 100.0 1.8E-30 6.1E-35 208.8 11.1 133 53-194 4-154 (240)
15 1g6h_A High-affinity branched- 100.0 1.3E-30 4.4E-35 211.6 10.2 132 54-194 6-168 (257)
16 2yyz_A Sugar ABC transporter, 100.0 6.5E-30 2.2E-34 216.1 13.6 131 55-194 3-148 (359)
17 2it1_A 362AA long hypothetical 100.0 9.8E-30 3.3E-34 215.3 14.6 131 55-194 3-148 (362)
18 2nq2_C Hypothetical ABC transp 100.0 6.2E-30 2.1E-34 207.2 11.8 130 55-194 4-143 (253)
19 1oxx_K GLCV, glucose, ABC tran 100.0 6E-30 2.1E-34 216.2 12.0 131 55-194 3-155 (353)
20 2yz2_A Putative ABC transporte 100.0 1.2E-29 4.1E-34 206.9 12.9 133 55-194 2-153 (266)
21 3d31_A Sulfate/molybdate ABC t 100.0 7E-30 2.4E-34 215.2 11.8 129 55-194 1-142 (348)
22 1g29_1 MALK, maltose transport 100.0 1.7E-29 6E-34 214.6 14.2 131 55-194 3-154 (372)
23 1v43_A Sugar-binding transport 100.0 1.1E-29 3.8E-34 215.7 12.3 131 55-194 11-156 (372)
24 2ff7_A Alpha-hemolysin translo 100.0 3.1E-29 1.1E-33 202.4 12.6 131 55-194 7-160 (247)
25 3nh6_A ATP-binding cassette SU 100.0 3.8E-29 1.3E-33 207.5 12.8 137 54-194 52-205 (306)
26 1mv5_A LMRA, multidrug resista 100.0 2.8E-29 9.6E-34 202.2 11.5 131 55-194 1-154 (243)
27 2pjz_A Hypothetical protein ST 100.0 2.9E-29 1E-33 204.2 11.7 129 55-194 1-143 (263)
28 2onk_A Molybdate/tungstate ABC 100.0 3.1E-29 1.1E-33 201.6 10.5 128 55-194 1-141 (240)
29 2zu0_C Probable ATP-dependent 100.0 4.8E-29 1.6E-33 203.4 10.7 136 53-194 18-179 (267)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 2.9E-29 9.8E-34 202.9 9.3 134 55-194 3-158 (250)
31 2pze_A Cystic fibrosis transme 100.0 3.3E-28 1.1E-32 194.3 14.1 130 54-194 5-145 (229)
32 2cbz_A Multidrug resistance-as 100.0 1.4E-28 4.7E-33 197.5 11.4 129 55-194 3-142 (237)
33 2qi9_C Vitamin B12 import ATP- 100.0 2.3E-28 7.7E-33 197.6 12.7 126 55-194 4-141 (249)
34 2ixe_A Antigen peptide transpo 100.0 1.4E-28 4.9E-33 201.0 11.4 132 54-194 15-171 (271)
35 2ghi_A Transport protein; mult 100.0 6.7E-28 2.3E-32 195.9 13.4 132 54-194 16-170 (260)
36 3qf4_A ABC transporter, ATP-bi 99.9 2E-27 6.8E-32 212.8 15.7 139 53-194 339-494 (587)
37 3gd7_A Fusion complex of cysti 99.9 1.2E-27 4E-32 204.3 12.1 136 53-194 17-170 (390)
38 3b5x_A Lipid A export ATP-bind 99.9 1E-26 3.5E-31 208.0 18.1 137 54-194 340-495 (582)
39 3b60_A Lipid A export ATP-bind 99.9 1.5E-26 5.1E-31 206.9 18.4 137 54-194 340-495 (582)
40 4a82_A Cystic fibrosis transme 99.9 1.1E-26 3.7E-31 207.7 17.2 138 53-194 337-492 (578)
41 4f4c_A Multidrug resistance pr 99.9 4.4E-27 1.5E-31 226.4 15.0 137 54-194 1075-1232(1321)
42 3qf4_B Uncharacterized ABC tra 99.9 3.5E-27 1.2E-31 211.7 13.2 137 54-194 353-506 (598)
43 4f4c_A Multidrug resistance pr 99.9 2E-26 6.7E-31 221.9 19.0 138 54-194 414-569 (1321)
44 2yl4_A ATP-binding cassette SU 99.9 6E-26 2.1E-30 203.5 18.4 135 56-194 342-498 (595)
45 3g5u_A MCG1178, multidrug resi 99.9 2.2E-25 7.5E-30 214.2 18.7 137 54-194 386-541 (1284)
46 2bbs_A Cystic fibrosis transme 99.9 3.4E-26 1.2E-30 188.6 10.2 126 54-194 39-174 (290)
47 1yqt_A RNAse L inhibitor; ATP- 99.9 2.9E-25 1E-29 196.9 8.8 130 53-194 285-416 (538)
48 3g5u_A MCG1178, multidrug resi 99.9 4.8E-25 1.6E-29 211.8 10.9 137 54-194 1029-1186(1284)
49 3bk7_A ABC transporter ATP-bin 99.9 3.6E-25 1.2E-29 198.6 9.0 130 53-194 355-486 (607)
50 2iw3_A Elongation factor 3A; a 99.9 8.3E-25 2.8E-29 203.6 11.6 76 53-128 669-745 (986)
51 3ozx_A RNAse L inhibitor; ATP 99.9 3.7E-24 1.3E-28 189.7 10.5 131 53-194 267-400 (538)
52 3j16_B RLI1P; ribosome recycli 99.9 1.2E-22 4.2E-27 182.1 8.5 126 59-194 350-482 (608)
53 3bk7_A ABC transporter ATP-bin 99.9 6.5E-23 2.2E-27 184.0 6.1 130 55-194 83-243 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.9 8.1E-23 2.8E-27 181.2 5.4 129 56-194 21-173 (538)
55 2iw3_A Elongation factor 3A; a 99.8 5.3E-21 1.8E-25 178.1 13.3 129 54-194 434-563 (986)
56 3j16_B RLI1P; ribosome recycli 99.8 9.5E-21 3.2E-25 169.8 5.9 127 60-194 82-236 (608)
57 3ozx_A RNAse L inhibitor; ATP 99.8 1.2E-19 4.2E-24 160.7 5.5 124 60-194 4-153 (538)
58 3ux8_A Excinuclease ABC, A sub 99.7 1.2E-18 3.9E-23 158.2 7.8 121 69-194 31-217 (670)
59 2npi_A Protein CLP1; CLP1-PCF1 99.7 4.1E-22 1.4E-26 173.6 -15.8 124 53-193 116-249 (460)
60 3ux8_A Excinuclease ABC, A sub 99.7 2.6E-17 9E-22 149.3 6.9 35 69-103 335-369 (670)
61 3b85_A Phosphate starvation-in 99.7 1.7E-19 5.9E-24 141.8 -6.7 56 68-128 12-75 (208)
62 3aez_A Pantothenate kinase; tr 99.7 1.9E-19 6.4E-24 149.7 -8.3 122 54-194 42-191 (312)
63 2v9p_A Replication protein E1; 99.7 8.9E-20 3E-24 151.0 -10.5 62 55-128 101-162 (305)
64 2vf7_A UVRA2, excinuclease ABC 99.6 5.8E-16 2E-20 142.9 11.3 48 53-106 500-548 (842)
65 1z6g_A Guanylate kinase; struc 99.6 4.9E-17 1.7E-21 128.4 1.0 44 69-115 10-53 (218)
66 2r6f_A Excinuclease ABC subuni 99.6 9.9E-16 3.4E-20 142.2 8.0 44 54-103 628-671 (972)
67 2dpy_A FLII, flagellum-specifi 99.6 1.3E-16 4.5E-21 138.1 1.7 63 54-117 130-192 (438)
68 3sop_A Neuronal-specific septi 99.6 3.4E-17 1.2E-21 133.5 -2.7 101 84-194 4-113 (270)
69 1tq4_A IIGP1, interferon-induc 99.6 2E-17 6.8E-22 142.1 -4.8 112 69-194 36-171 (413)
70 2ygr_A Uvrabc system protein A 99.6 1.6E-15 5.3E-20 141.3 6.6 44 54-103 646-689 (993)
71 2obl_A ESCN; ATPase, hydrolase 99.6 1.8E-16 6E-21 133.5 -0.1 63 54-117 44-106 (347)
72 2jeo_A Uridine-cytidine kinase 99.6 3.1E-16 1.1E-20 125.5 1.4 111 67-190 10-127 (245)
73 1htw_A HI0065; nucleotide-bind 99.6 1.6E-17 5.5E-22 125.2 -6.3 57 59-117 11-67 (158)
74 4aby_A DNA repair protein RECN 99.6 6E-15 2.1E-19 126.2 8.2 37 70-107 49-85 (415)
75 3pih_A Uvrabc system protein A 99.6 6.5E-15 2.2E-19 136.9 8.9 39 55-99 589-627 (916)
76 4gp7_A Metallophosphoesterase; 99.5 2.9E-15 9.8E-20 113.8 1.5 30 74-103 1-30 (171)
77 3b9q_A Chloroplast SRP recepto 99.5 1.1E-15 3.9E-20 126.3 -3.4 109 72-194 90-216 (302)
78 2yv5_A YJEQ protein; hydrolase 99.4 3E-14 1E-18 117.7 2.6 110 78-193 161-301 (302)
79 2og2_A Putative signal recogni 99.4 5.8E-15 2E-19 124.7 -3.8 108 73-194 148-273 (359)
80 2pt7_A CAG-ALFA; ATPase, prote 99.4 2.6E-14 9E-19 119.5 0.1 47 71-117 160-206 (330)
81 3euj_A Chromosome partition pr 99.4 2.3E-13 8E-18 118.7 5.1 47 70-117 18-64 (483)
82 3asz_A Uridine kinase; cytidin 99.4 1.2E-13 4E-18 107.6 2.6 97 79-192 3-106 (211)
83 2rcn_A Probable GTPase ENGC; Y 99.4 3.5E-14 1.2E-18 119.8 -0.5 110 72-194 206-328 (358)
84 2qnr_A Septin-2, protein NEDD5 99.4 1.4E-14 4.9E-19 119.6 -4.1 115 59-193 2-127 (301)
85 1ye8_A Protein THEP1, hypothet 99.3 1.2E-13 4.2E-18 105.7 0.6 82 84-193 2-90 (178)
86 1p9r_A General secretion pathw 99.3 5.4E-15 1.9E-19 127.2 -9.9 57 57-116 145-201 (418)
87 2gza_A Type IV secretion syste 99.3 8.3E-14 2.9E-18 117.7 -2.8 72 57-128 137-231 (361)
88 1pui_A ENGB, probable GTP-bind 99.3 5.1E-13 1.7E-17 103.3 1.3 57 55-115 3-64 (210)
89 2f1r_A Molybdopterin-guanine d 99.2 1.5E-13 5.3E-18 104.6 -3.9 35 83-117 3-40 (171)
90 1u0l_A Probable GTPase ENGC; p 99.2 5.1E-13 1.7E-17 110.2 -1.0 101 77-177 164-294 (301)
91 1sq5_A Pantothenate kinase; P- 99.2 1E-13 3.5E-18 114.7 -5.7 59 54-115 36-115 (308)
92 1tf7_A KAIC; homohexamer, hexa 99.2 1.1E-12 3.6E-17 115.9 -0.3 123 55-193 12-147 (525)
93 2eyu_A Twitching motility prot 99.2 1E-12 3.4E-17 106.5 -0.5 46 70-117 15-61 (261)
94 2qm8_A GTPase/ATPase; G protei 99.2 8.3E-14 2.9E-18 116.7 -7.7 60 56-116 30-89 (337)
95 3lnc_A Guanylate kinase, GMP k 99.2 4.7E-12 1.6E-16 100.1 2.4 37 70-106 15-52 (231)
96 1in4_A RUVB, holliday junction 99.2 1.9E-14 6.5E-19 120.3 -12.5 130 56-195 19-178 (334)
97 1znw_A Guanylate kinase, GMP k 99.1 1.3E-11 4.4E-16 96.1 3.2 37 69-107 9-45 (207)
98 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 1.5E-11 5.1E-16 104.0 3.7 32 71-103 13-44 (365)
99 1t9h_A YLOQ, probable GTPase E 99.1 1.2E-12 4.2E-17 108.2 -3.1 103 77-186 168-302 (307)
100 1e69_A Chromosome segregation 99.1 4.1E-11 1.4E-15 99.5 5.5 33 73-106 16-48 (322)
101 2yhs_A FTSY, cell division pro 99.1 9.7E-12 3.3E-16 108.5 1.0 45 72-116 283-327 (503)
102 1s96_A Guanylate kinase, GMP k 99.1 9.4E-12 3.2E-16 98.2 0.7 51 77-127 11-70 (219)
103 2qag_B Septin-6, protein NEDD5 99.1 7.4E-12 2.5E-16 107.7 -1.3 69 55-128 16-91 (427)
104 1qhl_A Protein (cell division 99.1 1.9E-12 6.4E-17 102.8 -5.3 53 55-116 9-61 (227)
105 1tf7_A KAIC; homohexamer, hexa 99.0 4E-11 1.4E-15 105.8 2.2 94 76-194 275-368 (525)
106 2i3b_A HCR-ntpase, human cance 99.0 2.7E-11 9.1E-16 93.5 0.9 45 82-128 1-54 (189)
107 2qag_C Septin-7; cell cycle, c 99.0 8.9E-11 3E-15 100.9 3.9 51 54-111 10-60 (418)
108 3nwj_A ATSK2; P loop, shikimat 99.0 1.2E-11 4.2E-16 99.5 -1.4 53 54-106 16-72 (250)
109 1zp6_A Hypothetical protein AT 99.0 1.8E-10 6.2E-15 87.8 4.7 38 78-117 5-42 (191)
110 2ehv_A Hypothetical protein PH 99.0 4.4E-11 1.5E-15 94.7 1.2 58 56-116 7-66 (251)
111 3tr0_A Guanylate kinase, GMP k 99.0 1.1E-10 3.8E-15 89.9 3.2 32 76-107 1-32 (205)
112 3szr_A Interferon-induced GTP- 99.0 1.2E-11 4.1E-16 111.0 -3.0 71 55-128 10-106 (608)
113 3kta_A Chromosome segregation 99.0 4.3E-10 1.5E-14 85.2 5.7 93 73-166 18-138 (182)
114 2o8b_B DNA mismatch repair pro 99.0 2.3E-10 7.7E-15 107.9 4.8 55 53-108 748-814 (1022)
115 2oap_1 GSPE-2, type II secreti 99.0 6.2E-11 2.1E-15 104.4 0.7 48 70-117 248-295 (511)
116 1rj9_A FTSY, signal recognitio 99.0 1.9E-10 6.4E-15 95.0 3.2 37 81-117 101-137 (304)
117 1cr0_A DNA primase/helicase; R 99.0 6.2E-11 2.1E-15 96.9 0.0 45 70-114 23-68 (296)
118 4a74_A DNA repair and recombin 99.0 3E-10 1E-14 88.8 3.9 31 78-108 21-51 (231)
119 1ewq_A DNA mismatch repair pro 99.0 1.2E-10 4.1E-15 106.8 1.7 71 54-127 549-622 (765)
120 1lw7_A Transcriptional regulat 99.0 4.3E-11 1.5E-15 101.0 -1.4 44 72-115 158-207 (365)
121 1lvg_A Guanylate kinase, GMP k 98.9 1.9E-10 6.5E-15 89.0 2.2 28 80-107 2-29 (198)
122 1udx_A The GTP-binding protein 98.9 5.7E-10 1.9E-14 95.9 4.3 35 72-106 147-181 (416)
123 3a00_A Guanylate kinase, GMP k 98.9 4.1E-10 1.4E-14 86.1 2.4 26 82-107 1-26 (186)
124 3c8u_A Fructokinase; YP_612366 98.9 3E-10 1E-14 88.3 1.4 31 79-109 19-49 (208)
125 3e70_C DPA, signal recognition 98.9 4.2E-10 1.5E-14 93.8 2.0 38 79-116 126-163 (328)
126 2j41_A Guanylate kinase; GMP, 98.8 1.3E-09 4.6E-14 83.8 3.8 35 77-111 1-35 (207)
127 2ewv_A Twitching motility prot 98.8 2.9E-10 1E-14 96.3 -0.1 55 71-127 127-189 (372)
128 1nlf_A Regulatory protein REPA 98.8 4E-09 1.4E-13 85.5 5.3 99 78-189 26-128 (279)
129 3uie_A Adenylyl-sulfate kinase 98.8 2.5E-10 8.5E-15 88.2 -1.9 53 59-113 3-55 (200)
130 3jvv_A Twitching mobility prot 98.8 8.2E-10 2.8E-14 93.1 0.7 45 70-114 104-156 (356)
131 3thx_A DNA mismatch repair pro 98.8 3.5E-09 1.2E-13 99.0 4.4 58 54-111 630-699 (934)
132 3thx_B DNA mismatch repair pro 98.8 2.6E-09 9E-14 99.6 3.3 52 54-105 639-696 (918)
133 2w0m_A SSO2452; RECA, SSPF, un 98.7 1.1E-09 3.6E-14 85.5 0.2 47 69-115 9-56 (235)
134 1wb9_A DNA mismatch repair pro 98.7 5.1E-09 1.7E-13 96.6 4.5 72 54-126 576-652 (800)
135 1kgd_A CASK, peripheral plasma 98.7 3.7E-09 1.3E-13 80.3 2.4 34 80-113 3-37 (180)
136 2bbw_A Adenylate kinase 4, AK4 98.7 2.7E-09 9.3E-14 84.9 1.6 36 81-116 26-64 (246)
137 2bdt_A BH3686; alpha-beta prot 98.7 6.5E-09 2.2E-13 79.2 3.1 33 82-117 2-34 (189)
138 3vaa_A Shikimate kinase, SK; s 98.7 7.8E-09 2.7E-13 79.7 3.6 38 69-106 12-49 (199)
139 4eun_A Thermoresistant glucoki 98.7 7.7E-09 2.6E-13 79.7 3.2 38 76-117 23-60 (200)
140 2o5v_A DNA replication and rep 98.7 2.5E-08 8.6E-13 84.1 6.1 44 57-104 5-48 (359)
141 2x8a_A Nuclear valosin-contain 98.7 3.9E-09 1.3E-13 85.8 1.0 44 69-116 33-76 (274)
142 4e22_A Cytidylate kinase; P-lo 98.6 4E-09 1.4E-13 84.6 0.5 35 80-114 25-62 (252)
143 3ec2_A DNA replication protein 98.6 2.7E-09 9.2E-14 80.8 -1.1 37 76-112 32-68 (180)
144 1odf_A YGR205W, hypothetical 3 98.6 4.7E-09 1.6E-13 86.0 0.2 100 80-192 29-147 (290)
145 1w1w_A Structural maintenance 98.6 1.6E-08 5.6E-13 86.9 3.6 49 55-110 6-54 (430)
146 1n0w_A DNA repair protein RAD5 98.6 5E-08 1.7E-12 76.6 5.2 39 78-116 20-65 (243)
147 3tau_A Guanylate kinase, GMP k 98.6 3.4E-08 1.2E-12 76.7 4.0 29 80-108 6-34 (208)
148 3tqc_A Pantothenate kinase; bi 98.6 1.6E-09 5.3E-14 90.1 -4.2 53 60-113 65-125 (321)
149 1nij_A Hypothetical protein YJ 98.6 1.3E-08 4.5E-13 84.3 1.4 35 83-117 5-47 (318)
150 3ney_A 55 kDa erythrocyte memb 98.5 3.1E-08 1.1E-12 76.8 3.1 32 76-107 13-44 (197)
151 1rz3_A Hypothetical protein rb 98.5 1.6E-08 5.5E-13 78.1 1.5 37 79-115 19-55 (201)
152 2vp4_A Deoxynucleoside kinase; 98.5 2.8E-08 9.6E-13 78.4 2.9 37 76-116 14-50 (230)
153 2kjq_A DNAA-related protein; s 98.5 2.6E-08 8.8E-13 73.7 1.8 30 81-111 35-64 (149)
154 1zu4_A FTSY; GTPase, signal re 98.5 1.5E-08 5.3E-13 84.1 0.6 43 73-115 96-138 (320)
155 1pzn_A RAD51, DNA repair and r 98.5 4.8E-08 1.7E-12 82.0 3.5 47 71-117 119-173 (349)
156 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 7E-08 2.4E-12 82.2 4.2 40 78-117 16-67 (392)
157 1ixz_A ATP-dependent metallopr 98.5 2.5E-08 8.5E-13 79.5 1.2 56 56-116 26-81 (254)
158 1ls1_A Signal recognition part 98.5 9.9E-09 3.4E-13 84.3 -1.4 55 56-115 77-131 (295)
159 1iy2_A ATP-dependent metallopr 98.5 2.7E-08 9.3E-13 80.5 1.1 55 57-116 51-105 (278)
160 1vma_A Cell division protein F 98.5 2.6E-08 8.8E-13 82.3 0.9 42 74-115 96-137 (306)
161 1oix_A RAS-related protein RAB 98.5 9.1E-08 3.1E-12 72.9 3.7 34 84-117 31-75 (191)
162 1svm_A Large T antigen; AAA+ f 98.5 2.4E-08 8.4E-13 84.6 0.5 43 70-115 157-199 (377)
163 3ice_A Transcription terminati 98.4 2.6E-08 9E-13 84.5 0.1 52 55-106 133-198 (422)
164 3cr8_A Sulfate adenylyltranfer 98.4 4.7E-08 1.6E-12 86.7 1.3 40 78-117 365-406 (552)
165 1knq_A Gluconate kinase; ALFA/ 98.4 8.4E-08 2.9E-12 72.0 2.5 33 80-116 6-38 (175)
166 1kag_A SKI, shikimate kinase I 98.4 1.4E-07 4.9E-12 70.4 2.9 28 81-108 3-30 (173)
167 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 2.3E-07 8E-12 68.5 3.7 30 73-103 15-44 (149)
168 2qt1_A Nicotinamide riboside k 98.4 2.1E-07 7.3E-12 71.7 3.5 31 77-107 16-46 (207)
169 3k1j_A LON protease, ATP-depen 98.3 1.4E-07 4.8E-12 84.5 1.8 55 60-115 39-94 (604)
170 2f9l_A RAB11B, member RAS onco 98.3 2.8E-07 9.7E-12 70.4 2.9 24 84-107 7-30 (199)
171 2px0_A Flagellar biosynthesis 98.3 1.9E-07 6.5E-12 76.6 2.1 32 80-111 103-134 (296)
172 2p67_A LAO/AO transport system 98.3 5.3E-08 1.8E-12 81.4 -1.3 54 60-114 35-88 (341)
173 2cvh_A DNA repair and recombin 98.3 3.8E-07 1.3E-11 70.5 3.2 34 71-104 8-42 (220)
174 3lda_A DNA repair protein RAD5 98.2 7.5E-07 2.6E-11 76.1 4.9 34 78-111 174-209 (400)
175 1cke_A CK, MSSA, protein (cyti 98.2 1E-07 3.5E-12 74.3 -0.5 34 82-115 5-41 (227)
176 4eaq_A DTMP kinase, thymidylat 98.2 5.6E-07 1.9E-11 71.1 3.2 42 72-114 13-57 (229)
177 2www_A Methylmalonic aciduria 98.2 4.2E-07 1.4E-11 76.2 2.1 35 81-115 73-107 (349)
178 2pez_A Bifunctional 3'-phospho 98.1 7.4E-07 2.5E-11 67.1 2.1 31 80-111 3-33 (179)
179 3qks_A DNA double-strand break 98.1 1.5E-06 5.1E-11 67.3 3.7 30 73-103 15-44 (203)
180 1f6b_A SAR1; gtpases, N-termin 98.1 9.1E-07 3.1E-11 67.7 2.1 41 63-104 7-47 (198)
181 3qkt_A DNA double-strand break 98.1 1.9E-06 6.7E-11 71.7 4.3 31 72-103 14-44 (339)
182 3m6a_A ATP-dependent protease 98.1 3.8E-07 1.3E-11 80.8 -0.4 56 59-116 87-142 (543)
183 3t34_A Dynamin-related protein 98.1 1.4E-06 4.7E-11 73.1 2.8 42 70-114 25-68 (360)
184 4ad8_A DNA repair protein RECN 98.1 6.7E-07 2.3E-11 78.7 0.5 34 71-105 50-83 (517)
185 1jjv_A Dephospho-COA kinase; P 98.0 2.7E-06 9.3E-11 65.3 3.5 22 84-105 4-25 (206)
186 2dr3_A UPF0273 protein PH0284; 98.0 2.6E-06 8.8E-11 66.8 3.4 45 71-115 11-57 (247)
187 2ffh_A Protein (FFH); SRP54, s 98.0 1.5E-06 5.1E-11 74.7 2.0 53 58-115 79-131 (425)
188 1sxj_E Activator 1 40 kDa subu 98.0 2E-06 7E-11 71.2 2.5 33 84-116 38-71 (354)
189 1m7g_A Adenylylsulfate kinase; 98.0 1.1E-06 3.8E-11 68.1 0.5 40 77-116 20-61 (211)
190 2qag_A Septin-2, protein NEDD5 98.0 5.6E-07 1.9E-11 75.8 -1.5 51 54-111 16-66 (361)
191 2gj8_A MNME, tRNA modification 98.0 4.2E-06 1.4E-10 62.5 3.5 26 81-106 3-28 (172)
192 1y63_A LMAJ004144AAA protein; 98.0 3.9E-06 1.3E-10 63.6 3.1 32 74-105 2-33 (184)
193 2if2_A Dephospho-COA kinase; a 98.0 3.5E-06 1.2E-10 64.5 2.9 22 84-105 3-24 (204)
194 1m2o_B GTP-binding protein SAR 97.9 6.1E-06 2.1E-10 62.5 4.0 33 71-104 13-45 (190)
195 2yvu_A Probable adenylyl-sulfa 97.9 2.9E-06 1E-10 64.2 2.0 35 79-113 10-44 (186)
196 3auy_A DNA double-strand break 97.9 1.3E-05 4.5E-10 67.4 6.1 43 56-103 3-46 (371)
197 2dhr_A FTSH; AAA+ protein, hex 97.9 2.6E-06 9E-11 74.6 1.7 56 56-116 41-96 (499)
198 2zej_A Dardarin, leucine-rich 97.9 6.2E-06 2.1E-10 62.0 3.5 25 84-108 4-28 (184)
199 1j8m_F SRP54, signal recogniti 97.9 1.2E-06 4E-11 72.0 -0.7 54 58-115 77-131 (297)
200 2ohf_A Protein OLA1, GTP-bindi 97.9 6.3E-06 2.1E-10 70.2 3.8 38 79-116 19-67 (396)
201 2wji_A Ferrous iron transport 97.9 9E-06 3.1E-10 60.0 4.2 24 84-107 5-28 (165)
202 1mky_A Probable GTP-binding pr 97.9 9.8E-06 3.4E-10 69.7 4.9 34 84-117 182-227 (439)
203 2qor_A Guanylate kinase; phosp 97.9 5.9E-06 2E-10 63.5 3.1 30 78-107 8-37 (204)
204 3hr8_A Protein RECA; alpha and 97.9 4.5E-06 1.5E-10 70.2 2.1 35 79-113 58-92 (356)
205 2qtf_A Protein HFLX, GTP-bindi 97.8 1.2E-05 4E-10 67.8 4.3 37 81-117 177-225 (364)
206 1ega_A Protein (GTP-binding pr 97.8 5.7E-06 2E-10 67.8 2.1 26 81-106 7-32 (301)
207 2wjg_A FEOB, ferrous iron tran 97.7 1.7E-05 5.7E-10 59.4 3.4 22 84-105 9-30 (188)
208 2ga8_A Hypothetical 39.9 kDa p 97.7 3.4E-06 1.2E-10 70.8 -0.6 37 70-106 10-48 (359)
209 1sxj_C Activator 1 40 kDa subu 97.7 1.6E-06 5.4E-11 72.0 -2.7 44 68-111 30-75 (340)
210 3lxx_A GTPase IMAP family memb 97.7 2.4E-05 8.2E-10 61.5 4.2 29 84-112 31-59 (239)
211 3t61_A Gluconokinase; PSI-biol 97.7 1.5E-05 5.1E-10 61.0 2.7 25 82-106 18-42 (202)
212 3cm0_A Adenylate kinase; ATP-b 97.7 1.9E-05 6.6E-10 59.3 2.9 25 80-104 2-26 (186)
213 1q3t_A Cytidylate kinase; nucl 97.7 2.6E-05 8.9E-10 61.3 3.5 27 78-104 12-38 (236)
214 1np6_A Molybdopterin-guanine d 97.7 1.3E-05 4.6E-10 60.6 1.7 27 83-109 7-33 (174)
215 2ius_A DNA translocase FTSK; n 97.7 2.6E-05 8.7E-10 68.5 3.7 42 73-114 158-201 (512)
216 2vf7_A UVRA2, excinuclease ABC 97.6 3.2E-05 1.1E-09 71.6 4.3 40 54-99 14-53 (842)
217 1lv7_A FTSH; alpha/beta domain 97.6 1.9E-05 6.5E-10 62.7 2.3 35 71-107 36-70 (257)
218 2dy1_A Elongation factor G; tr 97.6 1.4E-05 4.7E-10 72.4 1.4 38 76-113 3-42 (665)
219 2zr9_A Protein RECA, recombina 97.5 3E-05 1E-09 64.9 2.5 36 78-113 57-92 (349)
220 3kb2_A SPBC2 prophage-derived 97.5 4.6E-05 1.6E-09 56.2 3.3 23 84-106 3-25 (173)
221 3r20_A Cytidylate kinase; stru 97.5 1.4E-05 4.8E-10 63.3 0.4 32 82-113 9-43 (233)
222 1ypw_A Transitional endoplasmi 97.5 2.7E-05 9.4E-10 71.9 2.3 33 77-109 233-265 (806)
223 4ag6_A VIRB4 ATPase, type IV s 97.5 3.5E-05 1.2E-09 65.1 2.4 35 81-115 34-68 (392)
224 1qhx_A CPT, protein (chloramph 97.5 7.3E-05 2.5E-09 55.7 3.8 26 82-107 3-28 (178)
225 1jal_A YCHF protein; nucleotid 97.5 0.00011 3.9E-09 61.8 5.3 36 82-117 2-48 (363)
226 2ygr_A Uvrabc system protein A 97.5 6.5E-05 2.2E-09 70.5 3.9 39 55-99 25-63 (993)
227 2r6f_A Excinuclease ABC subuni 97.5 6.6E-05 2.2E-09 70.2 3.9 29 71-99 33-61 (972)
228 1ex7_A Guanylate kinase; subst 97.5 6.4E-05 2.2E-09 57.4 3.2 21 85-105 4-24 (186)
229 3kl4_A SRP54, signal recogniti 97.5 3.1E-05 1E-09 66.7 1.5 35 81-115 96-130 (433)
230 1kht_A Adenylate kinase; phosp 97.4 8.3E-05 2.8E-09 55.7 3.7 25 82-106 3-27 (192)
231 3k53_A Ferrous iron transport 97.4 6.4E-05 2.2E-09 60.3 3.1 24 84-107 5-28 (271)
232 2p5t_B PEZT; postsegregational 97.4 2.1E-05 7.3E-10 62.6 0.1 30 78-107 28-57 (253)
233 1vht_A Dephospho-COA kinase; s 97.4 8.3E-05 2.8E-09 57.4 3.4 23 82-104 4-26 (218)
234 3lw7_A Adenylate kinase relate 97.4 8.5E-05 2.9E-09 54.6 3.3 19 84-102 3-21 (179)
235 2jaq_A Deoxyguanosine kinase; 97.4 8.6E-05 3E-09 56.2 3.4 23 84-106 2-24 (205)
236 2rhm_A Putative kinase; P-loop 97.4 7.4E-05 2.5E-09 56.2 2.8 27 80-106 3-29 (193)
237 1via_A Shikimate kinase; struc 97.4 8.4E-05 2.9E-09 55.4 3.0 23 84-106 6-28 (175)
238 3pih_A Uvrabc system protein A 97.4 5.3E-05 1.8E-09 70.7 2.2 30 70-99 12-41 (916)
239 2ze6_A Isopentenyl transferase 97.4 8.9E-05 3E-09 59.1 3.2 23 84-106 3-25 (253)
240 1gtv_A TMK, thymidylate kinase 97.3 4.9E-05 1.7E-09 58.3 1.2 25 84-108 2-26 (214)
241 2v54_A DTMP kinase, thymidylat 97.3 0.00014 4.6E-09 55.3 3.6 26 81-106 3-28 (204)
242 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.7E-09 54.0 3.4 22 83-104 3-24 (181)
243 3iij_A Coilin-interacting nucl 97.3 0.00014 4.7E-09 54.4 3.3 25 80-104 9-33 (180)
244 2ged_A SR-beta, signal recogni 97.3 0.00013 4.5E-09 54.6 3.2 25 83-107 49-73 (193)
245 3b1v_A Ferrous iron uptake tra 97.3 0.0002 6.7E-09 57.8 4.3 23 84-106 5-27 (272)
246 3trf_A Shikimate kinase, SK; a 97.3 0.00016 5.6E-09 54.1 3.6 25 82-106 5-29 (185)
247 1uf9_A TT1252 protein; P-loop, 97.3 0.00013 4.5E-09 55.3 3.0 23 83-105 9-31 (203)
248 2erx_A GTP-binding protein DI- 97.3 0.00033 1.1E-08 51.0 5.1 22 84-105 5-26 (172)
249 1fzq_A ADP-ribosylation factor 97.3 0.00013 4.4E-09 54.5 2.9 28 84-111 18-49 (181)
250 3ihw_A Centg3; RAS, centaurin, 97.3 0.00029 1E-08 52.8 4.8 28 84-111 22-54 (184)
251 2r6a_A DNAB helicase, replicat 97.3 3.1E-05 1.1E-09 66.9 -0.9 42 70-111 191-232 (454)
252 3q72_A GTP-binding protein RAD 97.3 0.00014 4.9E-09 52.9 2.9 24 84-107 4-27 (166)
253 1z0j_A RAB-22, RAS-related pro 97.2 0.00026 9E-09 51.5 4.3 23 84-106 8-30 (170)
254 2nzj_A GTP-binding protein REM 97.2 0.00019 6.4E-09 52.6 3.5 24 84-107 6-29 (175)
255 1z2a_A RAS-related protein RAB 97.2 0.00025 8.5E-09 51.5 4.0 23 84-106 7-29 (168)
256 3q85_A GTP-binding protein REM 97.2 0.0002 6.8E-09 52.3 3.4 24 84-107 4-27 (169)
257 2ce7_A Cell division protein F 97.2 5.8E-05 2E-09 65.7 0.6 36 69-106 38-73 (476)
258 1nn5_A Similar to deoxythymidy 97.2 0.00019 6.7E-09 54.8 3.4 27 79-105 6-32 (215)
259 1xjc_A MOBB protein homolog; s 97.2 0.00019 6.4E-09 54.0 3.2 26 83-108 5-30 (169)
260 3cf0_A Transitional endoplasmi 97.2 0.0001 3.5E-09 60.1 1.8 31 77-107 44-74 (301)
261 2plr_A DTMP kinase, probable t 97.2 0.0002 6.8E-09 54.5 3.4 28 81-108 3-30 (213)
262 2dyk_A GTP-binding protein; GT 97.2 0.00019 6.7E-09 51.8 3.2 23 84-106 3-25 (161)
263 3tw8_B RAS-related protein RAB 97.2 0.0002 6.8E-09 52.7 3.2 23 84-106 11-33 (181)
264 1gvn_B Zeta; postsegregational 97.2 0.00016 5.4E-09 58.8 2.8 26 81-106 32-57 (287)
265 2wwf_A Thymidilate kinase, put 97.2 0.00022 7.4E-09 54.5 3.4 26 80-105 8-33 (212)
266 2c95_A Adenylate kinase 1; tra 97.2 0.00022 7.5E-09 53.7 3.4 27 80-106 7-33 (196)
267 3llm_A ATP-dependent RNA helic 97.2 0.00014 4.8E-09 57.0 2.4 26 79-104 73-98 (235)
268 4fcw_A Chaperone protein CLPB; 97.2 0.00013 4.3E-09 59.1 2.1 31 83-113 48-78 (311)
269 2lkc_A Translation initiation 97.2 0.00024 8.1E-09 52.3 3.5 26 81-106 7-32 (178)
270 2ce2_X GTPase HRAS; signaling 97.2 0.00019 6.5E-09 51.8 2.8 23 84-106 5-27 (166)
271 3t1o_A Gliding protein MGLA; G 97.2 0.00023 7.8E-09 53.2 3.4 25 84-108 16-40 (198)
272 1nks_A Adenylate kinase; therm 97.2 0.00021 7.1E-09 53.5 3.1 24 84-107 3-26 (194)
273 1kao_A RAP2A; GTP-binding prot 97.2 0.00022 7.6E-09 51.5 3.2 22 84-105 5-26 (167)
274 1tev_A UMP-CMP kinase; ploop, 97.2 0.00023 7.7E-09 53.4 3.3 24 82-105 3-26 (196)
275 3ake_A Cytidylate kinase; CMP 97.2 0.00021 7.2E-09 54.3 3.1 23 84-106 4-26 (208)
276 1u8z_A RAS-related protein RAL 97.2 0.00023 7.7E-09 51.6 3.1 23 84-106 6-28 (168)
277 1z08_A RAS-related protein RAB 97.2 0.00032 1.1E-08 51.1 4.0 23 84-106 8-30 (170)
278 2e87_A Hypothetical protein PH 97.2 0.0002 6.8E-09 59.8 3.1 26 81-106 166-191 (357)
279 1ky3_A GTP-binding protein YPT 97.2 0.00032 1.1E-08 51.6 3.9 23 84-106 10-32 (182)
280 1c1y_A RAS-related protein RAP 97.2 0.00033 1.1E-08 50.8 4.0 22 84-105 5-26 (167)
281 1ek0_A Protein (GTP-binding pr 97.2 0.00032 1.1E-08 50.9 3.9 23 84-106 5-27 (170)
282 3lxw_A GTPase IMAP family memb 97.1 0.00024 8.3E-09 56.2 3.4 24 84-107 23-46 (247)
283 3pqc_A Probable GTP-binding pr 97.1 0.00021 7.3E-09 53.3 2.9 23 84-106 25-47 (195)
284 2z0h_A DTMP kinase, thymidylat 97.1 0.00026 8.8E-09 53.3 3.3 23 84-106 2-24 (197)
285 1svi_A GTP-binding protein YSX 97.1 0.00022 7.5E-09 53.4 2.9 24 83-106 24-47 (195)
286 1g16_A RAS-related protein SEC 97.1 0.00022 7.5E-09 51.9 2.8 23 84-106 5-27 (170)
287 1moz_A ARL1, ADP-ribosylation 97.1 0.00015 5E-09 53.8 1.9 23 82-104 18-40 (183)
288 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.00025 8.7E-09 52.1 3.2 23 84-106 9-31 (177)
289 2cxx_A Probable GTP-binding pr 97.1 0.00032 1.1E-08 52.1 3.7 23 84-106 3-25 (190)
290 2vli_A Antibiotic resistance p 97.1 0.00019 6.6E-09 53.5 2.4 26 81-106 4-29 (183)
291 2fn4_A P23, RAS-related protei 97.1 0.00025 8.4E-09 52.2 2.9 22 84-105 11-32 (181)
292 2oil_A CATX-8, RAS-related pro 97.1 0.00027 9.3E-09 53.0 3.2 23 84-106 27-49 (193)
293 1r2q_A RAS-related protein RAB 97.1 0.00029 9.7E-09 51.2 3.1 22 84-105 8-29 (170)
294 2hxs_A RAB-26, RAS-related pro 97.1 0.00033 1.1E-08 51.5 3.5 23 84-106 8-30 (178)
295 4dsu_A GTPase KRAS, isoform 2B 97.1 0.00042 1.4E-08 51.4 4.0 23 84-106 6-28 (189)
296 1upt_A ARL1, ADP-ribosylation 97.1 0.0003 1E-08 51.3 3.1 23 83-105 8-30 (171)
297 3bc1_A RAS-related protein RAB 97.1 0.0003 1E-08 52.3 3.1 22 84-105 13-34 (195)
298 3cbq_A GTP-binding protein REM 97.1 0.00024 8.2E-09 53.9 2.6 22 84-105 25-46 (195)
299 1r8s_A ADP-ribosylation factor 97.1 0.00031 1.1E-08 50.9 3.1 21 84-104 2-22 (164)
300 3clv_A RAB5 protein, putative; 97.1 0.00043 1.5E-08 51.7 3.9 23 84-106 9-31 (208)
301 1aky_A Adenylate kinase; ATP:A 97.0 0.00041 1.4E-08 53.6 3.8 26 81-106 3-28 (220)
302 3fb4_A Adenylate kinase; psych 97.0 0.00034 1.2E-08 53.7 3.3 23 84-106 2-24 (216)
303 1fnn_A CDC6P, cell division co 97.0 0.00026 8.8E-09 58.8 2.8 29 81-109 41-71 (389)
304 1z0f_A RAB14, member RAS oncog 97.0 0.00034 1.2E-08 51.3 3.1 23 84-106 17-39 (179)
305 1zd8_A GTP:AMP phosphotransfer 97.0 0.00036 1.2E-08 54.2 3.4 27 80-106 5-31 (227)
306 3con_A GTPase NRAS; structural 97.0 0.00034 1.2E-08 52.2 3.1 23 84-106 23-45 (190)
307 3iby_A Ferrous iron transport 97.0 0.00033 1.1E-08 55.9 3.1 23 84-106 3-25 (256)
308 2g6b_A RAS-related protein RAB 97.0 0.00036 1.2E-08 51.4 3.1 23 84-106 12-34 (180)
309 2y8e_A RAB-protein 6, GH09086P 97.0 0.00044 1.5E-08 50.7 3.6 22 84-105 16-37 (179)
310 1v5w_A DMC1, meiotic recombina 97.0 0.00045 1.5E-08 57.4 4.0 28 78-105 118-145 (343)
311 2a9k_A RAS-related protein RAL 97.0 0.00051 1.7E-08 50.7 3.9 23 84-106 20-42 (187)
312 2w58_A DNAI, primosome compone 97.0 0.00034 1.2E-08 53.2 3.0 31 83-113 55-85 (202)
313 2cjw_A GTP-binding protein GEM 97.0 0.00037 1.2E-08 52.7 3.1 22 84-105 8-29 (192)
314 3tkl_A RAS-related protein RAB 97.0 0.00049 1.7E-08 51.4 3.9 23 84-106 18-40 (196)
315 2bwj_A Adenylate kinase 5; pho 97.0 0.0004 1.4E-08 52.4 3.3 28 79-106 9-36 (199)
316 2pt5_A Shikimate kinase, SK; a 97.0 0.00044 1.5E-08 50.8 3.4 23 84-106 2-24 (168)
317 3kkq_A RAS-related protein M-R 97.0 0.00052 1.8E-08 50.8 3.9 22 84-105 20-41 (183)
318 1e6c_A Shikimate kinase; phosp 97.0 0.00037 1.3E-08 51.4 3.0 24 83-106 3-26 (173)
319 3t5g_A GTP-binding protein RHE 97.0 0.00075 2.6E-08 49.8 4.7 21 84-104 8-28 (181)
320 2efe_B Small GTP-binding prote 97.0 0.00056 1.9E-08 50.4 4.0 23 84-106 14-36 (181)
321 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00048 1.7E-08 51.3 3.6 22 84-105 9-30 (184)
322 1wf3_A GTP-binding protein; GT 97.0 0.00041 1.4E-08 56.7 3.4 23 84-106 9-31 (301)
323 2pbr_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 51.8 3.3 23 84-106 2-24 (195)
324 2z43_A DNA repair and recombin 97.0 0.00066 2.2E-08 55.9 4.7 28 78-105 103-130 (324)
325 3dl0_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 53.2 3.3 23 84-106 2-24 (216)
326 2bme_A RAB4A, RAS-related prot 97.0 0.0005 1.7E-08 51.0 3.6 23 84-106 12-34 (186)
327 1ksh_A ARF-like protein 2; sma 97.0 0.00044 1.5E-08 51.4 3.3 26 81-106 17-42 (186)
328 3llu_A RAS-related GTP-binding 97.0 0.00045 1.5E-08 52.2 3.3 25 84-108 22-46 (196)
329 3bos_A Putative DNA replicatio 97.0 0.00052 1.8E-08 52.9 3.8 27 81-107 51-77 (242)
330 1nrj_B SR-beta, signal recogni 97.0 0.00055 1.9E-08 52.4 3.8 24 84-107 14-37 (218)
331 3t5d_A Septin-7; GTP-binding p 97.0 0.00037 1.3E-08 55.9 2.9 23 84-106 10-32 (274)
332 1vg8_A RAS-related protein RAB 97.0 0.00043 1.5E-08 52.3 3.2 23 84-106 10-32 (207)
333 2gf9_A RAS-related protein RAB 97.0 0.00043 1.5E-08 51.7 3.1 23 84-106 24-46 (189)
334 2qby_A CDC6 homolog 1, cell di 97.0 0.00035 1.2E-08 57.7 2.8 30 80-109 43-72 (386)
335 2bov_A RAla, RAS-related prote 97.0 0.00045 1.5E-08 52.1 3.1 23 84-106 16-38 (206)
336 2cdn_A Adenylate kinase; phosp 96.9 0.00058 2E-08 51.9 3.8 26 81-106 19-44 (201)
337 1qf9_A UMP/CMP kinase, protein 96.9 0.00044 1.5E-08 51.7 3.0 24 82-105 6-29 (194)
338 2fg5_A RAB-22B, RAS-related pr 96.9 0.00041 1.4E-08 52.1 2.9 23 84-106 25-47 (192)
339 3a1s_A Iron(II) transport prot 96.9 0.00049 1.7E-08 54.9 3.5 23 84-106 7-29 (258)
340 2il1_A RAB12; G-protein, GDP, 96.9 0.00047 1.6E-08 51.9 3.1 23 84-106 28-50 (192)
341 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00049 1.7E-08 54.9 3.4 25 81-105 3-27 (260)
342 1zak_A Adenylate kinase; ATP:A 96.9 0.00042 1.4E-08 53.6 2.9 26 81-106 4-29 (222)
343 4bas_A ADP-ribosylation factor 96.9 0.0005 1.7E-08 51.5 3.2 22 84-105 19-40 (199)
344 3cnl_A YLQF, putative uncharac 96.9 0.00052 1.8E-08 55.1 3.5 29 83-111 100-128 (262)
345 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00048 1.6E-08 50.9 3.1 22 84-105 7-28 (186)
346 2gf0_A GTP-binding protein DI- 96.9 0.00043 1.5E-08 51.9 2.9 22 84-105 10-31 (199)
347 1zbd_A Rabphilin-3A; G protein 96.9 0.00053 1.8E-08 51.7 3.4 23 84-106 10-32 (203)
348 2dby_A GTP-binding protein; GD 96.9 0.00035 1.2E-08 58.9 2.6 23 84-106 3-25 (368)
349 3oes_A GTPase rhebl1; small GT 96.9 0.00043 1.5E-08 52.4 2.8 23 84-106 26-48 (201)
350 2a5j_A RAS-related protein RAB 96.9 0.0005 1.7E-08 51.5 3.2 23 84-106 23-45 (191)
351 3dz8_A RAS-related protein RAB 96.9 0.00044 1.5E-08 51.8 2.8 23 84-106 25-47 (191)
352 2xtp_A GTPase IMAP family memb 96.9 0.00048 1.6E-08 54.5 3.2 23 84-106 24-46 (260)
353 4dhe_A Probable GTP-binding pr 96.9 0.00026 8.8E-09 54.4 1.5 24 83-106 30-53 (223)
354 2h57_A ADP-ribosylation factor 96.9 0.00038 1.3E-08 52.1 2.4 23 84-106 23-45 (190)
355 1z06_A RAS-related protein RAB 96.9 0.00052 1.8E-08 51.3 3.2 23 84-106 22-44 (189)
356 1ukz_A Uridylate kinase; trans 96.9 0.00054 1.9E-08 52.0 3.3 23 83-105 16-38 (203)
357 3i8s_A Ferrous iron transport 96.9 0.00049 1.7E-08 55.4 3.2 23 84-106 5-27 (274)
358 2o52_A RAS-related protein RAB 96.9 0.00051 1.7E-08 52.0 3.1 23 84-106 27-49 (200)
359 2qu8_A Putative nucleolar GTP- 96.9 0.00054 1.8E-08 53.1 3.3 23 84-106 31-53 (228)
360 3iev_A GTP-binding protein ERA 96.9 0.00054 1.8E-08 56.1 3.4 24 83-106 11-34 (308)
361 1zuh_A Shikimate kinase; alpha 96.9 0.00064 2.2E-08 50.1 3.5 23 83-105 8-30 (168)
362 3reg_A RHO-like small GTPase; 96.9 0.00073 2.5E-08 50.7 3.9 23 84-106 25-47 (194)
363 2ew1_A RAS-related protein RAB 96.9 0.00065 2.2E-08 51.8 3.6 22 84-105 28-49 (201)
364 1zj6_A ADP-ribosylation factor 96.9 0.00055 1.9E-08 51.0 3.1 23 83-105 17-39 (187)
365 1zd9_A ADP-ribosylation factor 96.9 0.00056 1.9E-08 51.2 3.1 22 84-105 24-45 (188)
366 2iwr_A Centaurin gamma 1; ANK 96.9 0.00041 1.4E-08 51.1 2.4 22 84-105 9-30 (178)
367 3bwd_D RAC-like GTP-binding pr 96.9 0.00057 1.9E-08 50.4 3.1 24 83-106 9-32 (182)
368 3b9p_A CG5977-PA, isoform A; A 96.9 0.0006 2E-08 54.9 3.5 27 81-107 53-79 (297)
369 1x3s_A RAS-related protein RAB 96.9 0.00056 1.9E-08 51.0 3.1 23 84-106 17-39 (195)
370 2atv_A RERG, RAS-like estrogen 96.9 0.00058 2E-08 51.4 3.2 23 83-105 29-51 (196)
371 2iyv_A Shikimate kinase, SK; t 96.9 0.00055 1.9E-08 51.2 3.0 23 83-105 3-25 (184)
372 2f7s_A C25KG, RAS-related prot 96.9 0.00066 2.3E-08 51.8 3.5 24 84-107 27-50 (217)
373 2p5s_A RAS and EF-hand domain 96.9 0.00059 2E-08 51.5 3.2 24 83-106 29-52 (199)
374 2xb4_A Adenylate kinase; ATP-b 96.9 0.00063 2.2E-08 52.8 3.4 23 84-106 2-24 (223)
375 2h17_A ADP-ribosylation factor 96.9 0.0005 1.7E-08 51.1 2.7 23 84-106 23-45 (181)
376 2q3h_A RAS homolog gene family 96.9 0.00068 2.3E-08 51.1 3.4 24 83-106 21-44 (201)
377 3cph_A RAS-related protein SEC 96.8 0.00061 2.1E-08 51.7 3.1 24 83-106 21-44 (213)
378 1uj2_A Uridine-cytidine kinase 96.8 0.00064 2.2E-08 53.8 3.3 23 83-105 23-45 (252)
379 2grj_A Dephospho-COA kinase; T 96.8 0.00068 2.3E-08 51.8 3.3 23 83-105 13-35 (192)
380 2bcg_Y Protein YP2, GTP-bindin 96.8 0.00056 1.9E-08 51.8 2.8 23 84-106 10-32 (206)
381 1gwn_A RHO-related GTP-binding 96.8 0.00076 2.6E-08 51.6 3.6 23 84-106 30-52 (205)
382 3c5c_A RAS-like protein 12; GD 96.8 0.00066 2.3E-08 50.9 3.2 22 84-105 23-44 (187)
383 2j1l_A RHO-related GTP-binding 96.8 0.00065 2.2E-08 52.1 3.2 22 84-105 36-57 (214)
384 2g3y_A GTP-binding protein GEM 96.8 0.00076 2.6E-08 52.2 3.5 23 84-106 39-61 (211)
385 2fh5_B SR-beta, signal recogni 96.8 0.00093 3.2E-08 50.9 3.9 24 83-106 8-31 (214)
386 2fv8_A H6, RHO-related GTP-bin 96.8 0.00062 2.1E-08 51.8 2.9 23 84-106 27-49 (207)
387 2wsm_A Hydrogenase expression/ 96.8 0.00065 2.2E-08 52.1 2.9 23 83-105 31-53 (221)
388 2f6r_A COA synthase, bifunctio 96.8 0.00067 2.3E-08 54.8 3.1 22 83-104 76-97 (281)
389 1jwy_B Dynamin A GTPase domain 96.8 0.0007 2.4E-08 55.0 3.1 24 84-107 26-49 (315)
390 2b6h_A ADP-ribosylation factor 96.8 0.0007 2.4E-08 51.0 2.9 23 83-105 30-52 (192)
391 2fu5_C RAS-related protein RAB 96.8 0.00048 1.6E-08 51.0 1.9 23 84-106 10-32 (183)
392 1jbk_A CLPB protein; beta barr 96.7 0.001 3.5E-08 49.0 3.7 26 81-106 42-67 (195)
393 1e4v_A Adenylate kinase; trans 96.7 0.00077 2.6E-08 51.8 3.0 23 84-106 2-24 (214)
394 2gco_A H9, RHO-related GTP-bin 96.7 0.001 3.4E-08 50.4 3.6 23 84-106 27-49 (201)
395 1a7j_A Phosphoribulokinase; tr 96.7 0.00035 1.2E-08 56.9 1.1 25 82-106 5-29 (290)
396 2atx_A Small GTP binding prote 96.7 0.0008 2.7E-08 50.4 2.9 22 84-105 20-41 (194)
397 3v9p_A DTMP kinase, thymidylat 96.7 0.00073 2.5E-08 53.1 2.7 29 79-107 22-50 (227)
398 2aka_B Dynamin-1; fusion prote 96.7 0.0008 2.7E-08 54.1 2.9 24 84-107 28-51 (299)
399 1h65_A Chloroplast outer envel 96.7 0.00088 3E-08 53.5 3.1 23 84-106 41-63 (270)
400 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0011 3.8E-08 57.5 3.9 42 71-113 141-182 (473)
401 3def_A T7I23.11 protein; chlor 96.7 0.00093 3.2E-08 53.2 3.2 23 84-106 38-60 (262)
402 3tlx_A Adenylate kinase 2; str 96.7 0.001 3.6E-08 52.4 3.3 25 81-105 28-52 (243)
403 4djt_A GTP-binding nuclear pro 96.7 0.00043 1.5E-08 53.0 1.0 23 84-106 13-35 (218)
404 1l8q_A Chromosomal replication 96.7 0.00089 3E-08 54.7 2.9 28 82-109 37-64 (324)
405 2hup_A RAS-related protein RAB 96.6 0.00096 3.3E-08 50.6 2.9 23 84-106 31-53 (201)
406 4edh_A DTMP kinase, thymidylat 96.6 0.0011 3.9E-08 51.4 3.3 29 80-108 4-32 (213)
407 3be4_A Adenylate kinase; malar 96.6 0.0011 3.9E-08 51.1 3.3 25 82-106 5-29 (217)
408 3q3j_B RHO-related GTP-binding 96.6 0.0011 3.7E-08 50.9 3.1 22 84-105 29-50 (214)
409 2hf9_A Probable hydrogenase ni 96.6 0.00097 3.3E-08 51.3 2.8 23 84-106 40-62 (226)
410 1ltq_A Polynucleotide kinase; 96.6 0.0011 3.9E-08 53.4 3.4 22 83-104 3-24 (301)
411 3lv8_A DTMP kinase, thymidylat 96.6 0.0012 4.3E-08 52.1 3.4 27 81-107 26-52 (236)
412 4dcu_A GTP-binding protein ENG 96.6 0.00093 3.2E-08 57.6 2.9 23 83-105 24-46 (456)
413 3cpj_B GTP-binding protein YPT 96.6 0.0012 4.1E-08 50.8 3.2 23 84-106 15-37 (223)
414 4gzl_A RAS-related C3 botulinu 96.6 0.001 3.6E-08 50.5 2.8 22 83-104 31-52 (204)
415 2x77_A ADP-ribosylation factor 96.6 0.00072 2.5E-08 50.4 1.9 23 83-105 23-45 (189)
416 1ypw_A Transitional endoplasmi 96.6 0.00032 1.1E-08 64.8 -0.2 32 76-107 505-536 (806)
417 3h4m_A Proteasome-activating n 96.6 0.0012 4.1E-08 52.7 3.3 29 79-107 48-76 (285)
418 3d3q_A TRNA delta(2)-isopenten 96.6 0.0012 4.1E-08 55.0 3.3 24 84-107 9-32 (340)
419 1njg_A DNA polymerase III subu 96.6 0.0016 5.4E-08 49.7 3.7 23 84-106 47-69 (250)
420 1sxj_D Activator 1 41 kDa subu 96.6 0.00037 1.3E-08 57.3 -0.0 34 73-106 47-82 (353)
421 4tmk_A Protein (thymidylate ki 96.6 0.0015 5.1E-08 50.8 3.5 27 81-107 2-28 (213)
422 3zvl_A Bifunctional polynucleo 96.5 0.0014 4.9E-08 55.9 3.6 28 79-106 255-282 (416)
423 2yc2_C IFT27, small RAB-relate 96.5 0.00049 1.7E-08 51.9 0.6 22 84-105 22-43 (208)
424 2p65_A Hypothetical protein PF 96.5 0.0013 4.3E-08 48.5 2.8 27 81-107 42-68 (187)
425 1ak2_A Adenylate kinase isoenz 96.5 0.0017 6E-08 50.6 3.8 26 81-106 15-40 (233)
426 2i1q_A DNA repair and recombin 96.5 0.0015 5.1E-08 53.5 3.4 27 78-104 94-120 (322)
427 3a8t_A Adenylate isopentenyltr 96.5 0.0017 5.9E-08 54.0 3.8 27 81-107 39-65 (339)
428 2h92_A Cytidylate kinase; ross 96.5 0.0016 5.3E-08 50.0 3.2 25 82-106 3-27 (219)
429 2j0v_A RAC-like GTP-binding pr 96.5 0.0018 6.3E-08 49.1 3.6 22 84-105 11-32 (212)
430 1ko7_A HPR kinase/phosphatase; 96.5 0.0021 7.3E-08 52.9 4.1 34 70-104 133-166 (314)
431 3crm_A TRNA delta(2)-isopenten 96.5 0.0016 5.5E-08 53.9 3.4 24 83-106 6-29 (323)
432 2z4s_A Chromosomal replication 96.5 0.0013 4.3E-08 56.6 2.8 25 82-106 130-154 (440)
433 3exa_A TRNA delta(2)-isopenten 96.4 0.0018 6.1E-08 53.4 3.4 25 82-106 3-27 (322)
434 2ocp_A DGK, deoxyguanosine kin 96.4 0.0017 5.7E-08 50.9 3.1 26 82-107 2-27 (241)
435 3ld9_A DTMP kinase, thymidylat 96.4 0.002 6.8E-08 50.5 3.3 28 80-107 19-46 (223)
436 3tmk_A Thymidylate kinase; pho 96.4 0.0021 7.1E-08 50.1 3.4 29 80-108 3-31 (216)
437 3bh0_A DNAB-like replicative h 96.4 0.0022 7.4E-08 52.6 3.6 34 71-104 57-90 (315)
438 2qmh_A HPR kinase/phosphorylas 96.4 0.0028 9.4E-08 49.0 3.9 35 71-106 24-58 (205)
439 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0023 7.9E-08 50.2 3.6 27 80-106 37-63 (262)
440 3dm5_A SRP54, signal recogniti 96.4 0.0016 5.4E-08 56.2 2.8 29 81-109 99-127 (443)
441 1puj_A YLQF, conserved hypothe 96.4 0.0023 8E-08 51.7 3.6 26 84-109 122-147 (282)
442 2zts_A Putative uncharacterize 96.3 0.0031 1.1E-07 48.9 4.2 24 79-102 27-50 (251)
443 3foz_A TRNA delta(2)-isopenten 96.3 0.0023 8E-08 52.6 3.4 24 83-106 11-34 (316)
444 3r7w_A Gtpase1, GTP-binding pr 96.3 0.003 1E-07 51.5 4.0 24 83-106 4-27 (307)
445 2r62_A Cell division protease 96.3 0.00043 1.5E-08 55.0 -1.1 31 73-105 37-67 (268)
446 1u94_A RECA protein, recombina 96.3 0.0032 1.1E-07 52.7 4.1 28 79-106 60-87 (356)
447 2hjg_A GTP-binding protein ENG 96.2 0.0022 7.4E-08 55.0 3.0 23 84-106 5-27 (436)
448 1wxq_A GTP-binding protein; st 96.2 0.0024 8.2E-08 54.2 3.2 23 84-106 2-24 (397)
449 1p5z_B DCK, deoxycytidine kina 96.2 0.0015 5.1E-08 51.9 1.8 28 80-107 22-49 (263)
450 3n70_A Transport activator; si 96.2 0.0035 1.2E-07 45.2 3.6 29 81-109 23-51 (145)
451 3gj0_A GTP-binding nuclear pro 96.2 0.0016 5.5E-08 49.9 1.9 22 84-105 17-39 (221)
452 2orw_A Thymidine kinase; TMTK, 96.2 0.0033 1.1E-07 47.5 3.4 23 81-103 2-25 (184)
453 2xau_A PRE-mRNA-splicing facto 96.2 0.001 3.5E-08 61.2 0.5 32 79-110 106-137 (773)
454 3th5_A RAS-related C3 botulinu 95.1 0.00087 3E-08 50.7 0.0 23 83-105 31-53 (204)
455 2chg_A Replication factor C sm 96.1 0.0031 1.1E-07 47.5 3.1 23 84-106 40-62 (226)
456 3p32_A Probable GTPase RV1496/ 96.1 0.0031 1.1E-07 52.6 3.2 25 82-106 79-103 (355)
457 4hlc_A DTMP kinase, thymidylat 96.1 0.0038 1.3E-07 48.1 3.3 26 82-107 2-27 (205)
458 3l0i_B RAS-related protein RAB 96.1 0.00072 2.5E-08 51.0 -0.8 24 84-107 35-58 (199)
459 2v1u_A Cell division control p 96.0 0.0029 1E-07 52.2 2.7 28 80-107 42-69 (387)
460 4a1f_A DNAB helicase, replicat 96.0 0.0038 1.3E-07 51.9 3.4 36 72-107 36-71 (338)
461 3umf_A Adenylate kinase; rossm 96.0 0.0028 9.6E-08 49.4 2.4 28 79-106 26-53 (217)
462 2x2e_A Dynamin-1; nitration, h 96.0 0.0024 8.3E-08 53.1 2.1 23 84-106 33-55 (353)
463 2v3c_C SRP54, signal recogniti 96.0 0.0024 8.3E-08 54.8 2.1 26 83-108 100-125 (432)
464 3sr0_A Adenylate kinase; phosp 96.0 0.0044 1.5E-07 47.8 3.3 23 84-106 2-24 (206)
465 3syl_A Protein CBBX; photosynt 96.0 0.0044 1.5E-07 49.9 3.5 26 81-106 66-91 (309)
466 3geh_A MNME, tRNA modification 96.0 0.0035 1.2E-07 54.3 2.9 25 81-105 223-247 (462)
467 1lnz_A SPO0B-associated GTP-bi 95.9 0.0052 1.8E-07 51.1 3.8 32 74-105 150-181 (342)
468 3eph_A TRNA isopentenyltransfe 95.9 0.0042 1.4E-07 52.9 3.1 24 83-106 3-26 (409)
469 2q6t_A DNAB replication FORK h 95.9 0.0046 1.6E-07 53.1 3.3 37 71-107 189-225 (444)
470 3ec1_A YQEH GTPase; atnos1, at 95.9 0.0045 1.5E-07 51.9 3.1 25 81-105 161-185 (369)
471 2qpt_A EH domain-containing pr 95.9 0.004 1.4E-07 55.1 2.9 24 83-106 66-89 (550)
472 1d2n_A N-ethylmaleimide-sensit 95.8 0.0051 1.8E-07 48.8 3.1 26 81-106 63-88 (272)
473 2bjv_A PSP operon transcriptio 95.8 0.0091 3.1E-07 47.1 4.5 29 81-109 28-56 (265)
474 2qgz_A Helicase loader, putati 95.8 0.0067 2.3E-07 49.6 3.7 26 82-107 152-177 (308)
475 3sjy_A Translation initiation 95.8 0.0057 2E-07 51.8 3.4 23 84-106 10-32 (403)
476 3c5h_A Glucocorticoid receptor 95.7 0.0057 1.9E-07 48.4 3.2 21 84-104 21-50 (255)
477 1ofh_A ATP-dependent HSL prote 95.7 0.006 2.1E-07 48.9 3.3 25 82-106 50-74 (310)
478 2hjg_A GTP-binding protein ENG 95.7 0.0059 2E-07 52.2 3.4 24 84-107 177-200 (436)
479 3hws_A ATP-dependent CLP prote 95.7 0.0062 2.1E-07 50.6 3.3 25 82-106 51-75 (363)
480 3h2y_A GTPase family protein; 95.7 0.0047 1.6E-07 51.8 2.6 26 81-106 159-184 (368)
481 3dpu_A RAB family protein; roc 95.7 0.0062 2.1E-07 53.5 3.4 23 84-106 43-65 (535)
482 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0068 2.3E-07 49.8 3.5 27 80-106 43-69 (322)
483 3l0o_A Transcription terminati 95.7 0.0063 2.2E-07 51.7 3.3 31 75-105 168-198 (427)
484 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0066 2.2E-07 50.2 3.3 28 78-105 119-146 (331)
485 3o47_A ADP-ribosylation factor 95.7 0.0045 1.5E-07 51.0 2.3 23 84-106 167-189 (329)
486 2qen_A Walker-type ATPase; unk 95.7 0.0075 2.6E-07 49.0 3.7 26 81-106 30-55 (350)
487 3t15_A Ribulose bisphosphate c 95.7 0.0067 2.3E-07 49.1 3.3 25 82-106 36-60 (293)
488 3pvs_A Replication-associated 95.6 0.0046 1.6E-07 53.3 2.3 33 77-109 43-77 (447)
489 1mky_A Probable GTP-binding pr 95.6 0.0069 2.4E-07 51.8 3.5 23 84-106 3-25 (439)
490 2j69_A Bacterial dynamin-like 95.6 0.0066 2.2E-07 55.2 3.5 26 81-106 68-93 (695)
491 2qby_B CDC6 homolog 3, cell di 95.6 0.0072 2.5E-07 50.0 3.5 25 82-106 45-69 (384)
492 3uk6_A RUVB-like 2; hexameric 95.6 0.0072 2.5E-07 49.9 3.4 28 81-108 69-96 (368)
493 3gmt_A Adenylate kinase; ssgci 95.6 0.0078 2.7E-07 47.3 3.4 23 83-105 9-31 (230)
494 4dkx_A RAS-related protein RAB 95.6 0.0077 2.6E-07 46.6 3.3 21 84-104 15-35 (216)
495 3gee_A MNME, tRNA modification 95.6 0.0048 1.7E-07 53.6 2.3 26 81-106 232-257 (476)
496 3d8b_A Fidgetin-like protein 1 95.6 0.0083 2.8E-07 49.9 3.7 27 80-106 115-141 (357)
497 1xp8_A RECA protein, recombina 95.6 0.0089 3E-07 50.2 3.8 26 79-104 71-96 (366)
498 1f5n_A Interferon-induced guan 95.6 0.0059 2E-07 54.5 2.8 24 83-106 39-62 (592)
499 3tqf_A HPR(Ser) kinase; transf 95.5 0.012 4.2E-07 44.3 4.1 25 80-104 14-38 (181)
500 1g41_A Heat shock protein HSLU 95.5 0.0071 2.4E-07 52.1 3.1 25 84-108 52-76 (444)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=3e-31 Score=217.26 Aligned_cols=134 Identities=25% Similarity=0.366 Sum_probs=107.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------ee
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~ 120 (198)
++|+++||++.|++...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 57999999999965556999999999999999999999999999999999999999999998763 14
Q ss_pred EEEeccccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|||++|++...+. ..++.+++. ....+.. .+++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 86 ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg-----GqkQRv~iAraL 158 (275)
T 3gfo_A 86 IGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSF-----GQKKRVAIAGVL 158 (275)
T ss_dssp EEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCH-----HHHHHHHHHHHH
T ss_pred EEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCH-----HHHHHHHHHHHH
Confidence 9999998632221 334444332 1222222 45688999999996 567899999999 999999999874
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=3e-31 Score=211.31 Aligned_cols=132 Identities=21% Similarity=0.295 Sum_probs=105.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------- 118 (198)
++|+++|+++.|+ ...+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999995 467999999999999999999999999999999999999999999998652
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
..++|++|++...... ++.+++.. ...+ ...+++.++++.+++. +..++++.+||| ||||||+||+
T Consensus 82 ~~i~~v~q~~~l~~~~--tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~qrv~lar 153 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPEL--TALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSG-----GEQQRVAIAR 153 (224)
T ss_dssp HHEEEECSSCCCCTTS--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCH-----HHHHHHHHHH
T ss_pred CcEEEEecCcccCCCC--CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCH-----HHHHHHHHHH
Confidence 2399999986432223 33333211 1111 1245688999999996 466889999999 9999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+.
T Consensus 154 al 155 (224)
T 2pcj_A 154 AL 155 (224)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=2.8e-31 Score=212.96 Aligned_cols=133 Identities=22% Similarity=0.276 Sum_probs=104.7
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
+|+++||++.|+++ ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47899999999532 35899999999999999999999999999999999999999999998762
Q ss_pred --eeEEEeccccCCCCCCCCcHHHHHHH--hC---CCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHH
Q 029133 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CF---PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSR 187 (198)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~---~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~r 187 (198)
..++|++|++.... ..++.+++.. .. ... ..+++.++++.+++.....++++.+||| |||||
T Consensus 81 ~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-----Gq~QR 153 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG-----GQQQR 153 (235)
T ss_dssp HHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH-----HHHHH
T ss_pred hhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCH-----HHHHH
Confidence 14999999864322 2344443321 11 111 2356788999999975445889999999 99999
Q ss_pred Hhhcccc
Q 029133 188 PCFVPRR 194 (198)
Q Consensus 188 v~la~~~ 194 (198)
|+||++-
T Consensus 154 v~iAral 160 (235)
T 3tif_A 154 VAIARAL 160 (235)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=1.3e-30 Score=212.27 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=105.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------ee
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~ 120 (198)
++|+++||++.|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999994 567999999999999999999999999999999999999999999998752 13
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
++|++|++..... .++.+++.. ...+. ..+++.++++.+++. +..++++.+||| ||||||+||++
T Consensus 102 i~~v~Q~~~l~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg-----GqkQRv~lAra 173 (263)
T 2olj_A 102 VGMVFQRFNLFPH--MTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSG-----GQAQRVAIARA 173 (263)
T ss_dssp EEEECSSCCCCTT--SCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCH-----HHHHHHHHHHH
T ss_pred EEEEeCCCcCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCH-----HHHHHHHHHHH
Confidence 9999998643222 233333221 11122 145678999999996 567889999999 99999999987
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
.
T Consensus 174 L 174 (263)
T 2olj_A 174 L 174 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=1.5e-30 Score=212.19 Aligned_cols=133 Identities=23% Similarity=0.302 Sum_probs=109.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
.++|+++||++.|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 9 ~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 35899999999994 578999999999999999999999999999999999999999999998763 138
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh---C-CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC---F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++...+ ..++.+++... . .....+++.++++.+++. ...++++.+||| ||||||+||++-
T Consensus 88 ~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAF--PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSG-----GEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCS--CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCH-----HHHHHHHHHHHH
T ss_pred EEEecCCccCC--CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 99999864333 34454444321 1 123467788999999997 467888999999 999999999874
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=6.3e-31 Score=222.07 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=108.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------ee
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------~~ 120 (198)
++|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 3699999999994 577999999999999999999999999999999999999999999998653 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|||++|++... ...++.+++.... .. ...+++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 82 ig~vfQ~~~l~--p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSG-----Gq~QRValArAL 153 (359)
T 3fvq_A 82 LGYLVQEGVLF--PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSG-----GQQQRAALARAL 153 (359)
T ss_dssp CEEECTTCCCC--TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCH-----HHHHHHHHHHHH
T ss_pred EEEEeCCCcCC--CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99999986432 2345555544221 11 1246788999999997 577899999999 999999999874
No 7
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=1.5e-30 Score=205.89 Aligned_cols=131 Identities=24% Similarity=0.335 Sum_probs=105.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce------eEEEecc
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ 126 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~------~i~~~~q 126 (198)
..+|+++||++.|+ + .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 45899999999995 4 79999999999999999999999999999999999999999999988742 4999999
Q ss_pred ccCCCCCCCCcHHHHHH---HhCC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMM---RCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++.... ..++.+++. .... ....+++.++++.+++.. . ++++.+||| ||||||+||++-
T Consensus 86 ~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSg-----Gqkqrv~laraL 148 (214)
T 1sgw_A 86 EIIVPR--KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQ-----GTIRRVQLASTL 148 (214)
T ss_dssp SCCCCT--TSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCH-----HHHHHHHHHHHT
T ss_pred CCcCCC--CCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCH-----HHHHHHHHHHHH
Confidence 864322 234433322 1111 223677889999999974 4 788999999 999999999864
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=1.3e-30 Score=219.97 Aligned_cols=135 Identities=26% Similarity=0.345 Sum_probs=108.3
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEE
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA 122 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~ 122 (198)
++++|+++||++.|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 5678999999999932457999999999999999999999999999999999999999999998763 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.....+ ++.+++.. ...+. .++++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 91 ~v~Q~~~l~~~l--tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSG-----Gq~QRvalArAL 160 (355)
T 1z47_A 91 LVFQNYALFQHM--TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSG-----GQQQRVALARAL 160 (355)
T ss_dssp EECGGGCCCTTS--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCH-----HHHHHHHHHHHH
T ss_pred EEecCcccCCCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCH-----HHHHHHHHHHHH
Confidence 999986433333 33333221 11111 245788999999996 567899999999 999999999874
No 9
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=5.2e-31 Score=216.28 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=107.4
Q ss_pred CCCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-------------
Q 029133 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------- 118 (198)
..++|+++||++.|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 345799999999995 567999999999999999999999999999999999999999999998752
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHhC-------C--C-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF-------P--G-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~-------~--~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
..++|++|++...+....++.+++.... . . ...+++.++|+.+++. +..++++.+||| ||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----GqkqRv 170 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLST-----GEKQRV 170 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCH-----HHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCH-----HHHHHH
Confidence 1399999985322333335555443210 0 1 1235678999999996 567889999999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 171 ~lAraL 176 (279)
T 2ihy_A 171 MIARAL 176 (279)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.1e-30 Score=211.83 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=105.7
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce----------eEE
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIA 122 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~----------~i~ 122 (198)
-++|+++||++.|+ +..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.. .++
T Consensus 13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 35799999999994 5679999999999999999999999999999999999999999999987631 499
Q ss_pred EeccccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.... ..++.+++.. ...+.. .+++.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 92 ~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSg-----Gq~qRv~lAraL 161 (256)
T 1vpl_A 92 YLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSK-----GMVRKLLIARAL 161 (256)
T ss_dssp EECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCH-----HHHHHHHHHHHH
T ss_pred EEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 9999864322 2343333221 111111 35678999999996 466889999999 999999999864
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=9.2e-31 Score=221.34 Aligned_cols=135 Identities=18% Similarity=0.229 Sum_probs=107.2
Q ss_pred CCCeEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc----------
Q 029133 52 GPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (198)
Q Consensus 52 ~~~~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------- 118 (198)
..++|+++||++.|++. ..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 35689999999999532 35899999999999999999999999999999999999999999998763
Q ss_pred ----eeEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHH
Q 029133 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
..|||++|++.... ..++.+++.. ...+. ..+++.++|+.+++. +..++++.+||| ||||||
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSG-----GqkQRV 172 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSG-----GQKQRV 172 (366)
T ss_dssp HHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCH-----HHHHHH
T ss_pred HHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCH-----HHHHHH
Confidence 24999999864322 3344433321 11122 245688999999997 567899999999 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 173 aIArAL 178 (366)
T 3tui_C 173 AIARAL 178 (366)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999875
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=2.2e-30 Score=210.77 Aligned_cols=132 Identities=22% Similarity=0.274 Sum_probs=105.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------------- 118 (198)
++|+++||++.|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999994 567999999999999999999999999999999999999999999988652
Q ss_pred ---------eeEEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCccc-ccCccccccCCCCC
Q 029133 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNL-ALQPMYTLSGFGCS 181 (198)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~~~-~~~~~~~LSG~~ls 181 (198)
..++|++|++..... .++.+++.. ...+. ..+++.++|+.+++. +. .++++.+|||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~--ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSg---- 156 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSH--MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSG---- 156 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTT--SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCH----
T ss_pred ChhhHHHHhcceEEEecCcccCCC--CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCH----
Confidence 138999998643222 233333221 11122 235678999999997 45 6889999999
Q ss_pred ChHHHHHhhcccc
Q 029133 182 GGTNSRPCFVPRR 194 (198)
Q Consensus 182 ~Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 157 -Gq~qRv~lAraL 168 (262)
T 1b0u_A 157 -GQQQRVSIARAL 168 (262)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 999999999874
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=1.5e-30 Score=221.22 Aligned_cols=131 Identities=23% Similarity=0.288 Sum_probs=106.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..|+|++
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999994 567999999999999999999999999999999999999999999998763 2599999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.....+ ++.+++.. ...+. ..+++.++|+.+++. ...++++.+||| ||||||+||++-
T Consensus 82 Q~~~l~p~l--tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSG-----GqrQRVaiArAL 148 (381)
T 3rlf_A 82 QSYALYPHL--SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSG-----GQRQRVAIGRTL 148 (381)
T ss_dssp TTCCCCTTS--CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCH-----HHHHHHHHHHHH
T ss_pred cCCcCCCCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCH-----HHHHHHHHHHHH
Confidence 997433333 44433321 11122 246788999999997 567899999999 999999999874
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.8e-30 Score=208.80 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=105.2
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------ee
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~ 120 (198)
.++|+++||++.|+ +..+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 35799999999995 467999999999999999999999999999999999999999999998762 13
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--C--CC-CcHHHHHHHHHhcC-CCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-VPEQKLRAHLGSFG-VTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~~~~L~~~~-l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++... ...++.+++... . .. ...+.+.++++.++ +. +..++++.+||| ||||||+||++-
T Consensus 83 i~~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSg-----Gq~qrv~lAraL 154 (240)
T 1ji0_A 83 IALVPEGRRIF--PELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSG-----GEQQMLAIGRAL 154 (240)
T ss_dssp EEEECSSCCCC--TTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCH-----HHHHHHHHHHHH
T ss_pred EEEEecCCccC--CCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99999986432 233444444321 1 11 12356778899994 85 456788999999 999999999864
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=1.3e-30 Score=211.61 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=106.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc------------eeE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~------------~~i 121 (198)
++|+++||++.|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 6 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999994 567999999999999999999999999999999999999999999998752 149
Q ss_pred EEeccccCCCCCCCCcHHHHHHHh--C--CC-----------C----cHHHHHHHHHhcCCCcccccCccccccCCCCCC
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRC--F--PG-----------V----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSG 182 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-----------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~ 182 (198)
+|++|++... ...++.+++... . .+ . ..+++.++++.+++. +..++++.+|||
T Consensus 85 ~~v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg----- 156 (257)
T 1g6h_A 85 VRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSG----- 156 (257)
T ss_dssp EECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCH-----
T ss_pred EEEccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCH-----
Confidence 9999986322 223444443221 1 11 1 135678999999996 567889999999
Q ss_pred hHHHHHhhcccc
Q 029133 183 GTNSRPCFVPRR 194 (198)
Q Consensus 183 Ge~~rv~la~~~ 194 (198)
||||||+||++-
T Consensus 157 GqkQrv~iAraL 168 (257)
T 1g6h_A 157 GQMKLVEIGRAL 168 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=6.5e-30 Score=216.15 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=107.1
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++||++.|+ +..+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999994 567999999999999999999999999999999999999999999998763 2499999
Q ss_pred cccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.... ..++.+++... ..+.. .+++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 82 Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSg-----Gq~QRvalArAL 148 (359)
T 2yyz_A 82 QNYALYP--HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSG-----GQQQRVALARAL 148 (359)
T ss_dssp SSCCCCT--TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCH-----HHHHHHHHHHHH
T ss_pred cCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 9864322 33555554322 11222 35688999999996 567899999999 999999999874
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.96 E-value=9.8e-30 Score=215.30 Aligned_cols=131 Identities=22% Similarity=0.293 Sum_probs=105.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 589999999994 567999999999999999999999999999999999999999999998763 2499999
Q ss_pred cccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.....+ ++.+++.. ...+. ..+++.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 82 Q~~~l~~~l--tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSG-----Gq~QRvalArAL 148 (362)
T 2it1_A 82 QNWALYPHM--TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSG-----GQQQRVAIARAL 148 (362)
T ss_dssp TTCCCCTTS--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCH-----HHHHHHHHHHHH
T ss_pred cCcccCCCC--CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCH-----HHHHHHHHHHHH
Confidence 986433223 33333221 11111 245688999999997 567899999999 999999999874
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=6.2e-30 Score=207.19 Aligned_cols=130 Identities=25% Similarity=0.331 Sum_probs=104.6
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (198)
+|+++||++.|+++..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ..++|++|++....
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~~-- 79 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSPF-- 79 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCSS--
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccCC--
Confidence 69999999999525679999999999999999999999999999999999999999999842 35999999864322
Q ss_pred CCcHHHHHHHhC----------CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 135 SSNPLLYMMRCF----------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 135 ~~~~~~~~~~~~----------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..++.+++.... .....+++.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~qrv~lAraL 143 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSG-----GQRQLILIARAI 143 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCH-----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 334444433211 011245688999999996 566888999999 999999999864
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=6e-30 Score=216.16 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=106.4
Q ss_pred eEEEEeeEEEcCCCCc--ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------------
Q 029133 55 IISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~--~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-------------- 118 (198)
+|+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 589999999994 466 999999999999999999999999999999999999999999988652
Q ss_pred eeEEEeccccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcc
Q 029133 119 VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
..++|++|++.... ..++.+++... ..+.. .+++.++|+.+++. +..++++.+||| ||||||+||+
T Consensus 82 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSG-----Gq~QRvalAr 153 (353)
T 1oxx_K 82 RKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSG-----AQQQRVALAR 153 (353)
T ss_dssp SCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCH-----HHHHHHHHHH
T ss_pred CCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCH-----HHHHHHHHHH
Confidence 24999999864322 33455544321 11222 45688999999996 567899999999 9999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+-
T Consensus 154 aL 155 (353)
T 1oxx_K 154 AL 155 (353)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=1.2e-29 Score=206.90 Aligned_cols=133 Identities=21% Similarity=0.299 Sum_probs=106.2
Q ss_pred eEEEEeeEEEcC-CC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------eeEE
Q 029133 55 IISFSDASFGYP-GG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~-~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------~~i~ 122 (198)
+|+++||++.|+ +. +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999995 23 46999999999999999999999999999999999999999999998763 2499
Q ss_pred EeccccC-CCCCCCCcHHHHHHHh----CC-CCcHHHHHHHHHhcCCCc-ccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHV-DGLDLSSNPLLYMMRC----FP-GVPEQKLRAHLGSFGVTG-NLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~-~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++. ..+. .++.+++... .. ....+++.++++.+++.. +..++++.+||| ||||||+||++-
T Consensus 82 ~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg-----Gq~qRv~lAraL 153 (266)
T 2yz2_A 82 IAFQYPEDQFFA--ERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSG-----GEKRRVAIASVI 153 (266)
T ss_dssp EECSSGGGGCCC--SSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCH-----HHHHHHHHHHHH
T ss_pred EEeccchhhcCC--CcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCH-----HHHHHHHHHHHH
Confidence 9999852 2222 3444444321 11 223567889999999961 456888999999 999999999864
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=7e-30 Score=215.23 Aligned_cols=129 Identities=22% Similarity=0.252 Sum_probs=104.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++||++.|+ +. +|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 478999999995 45 999999999999999999999999999999999999999999998763 2499999
Q ss_pred cccCCCCCCCCcHHHHHHH----hCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMR----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++.....+ ++.+++.. ..... .+++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 79 Q~~~l~~~l--tv~enl~~~~~~~~~~~-~~~v~~~l~~~~L~-~~~~~~~~~LSg-----Gq~QRvalAraL 142 (348)
T 3d31_A 79 QNYSLFPHM--NVKKNLEFGMRMKKIKD-PKRVLDTARDLKIE-HLLDRNPLTLSG-----GEQQRVALARAL 142 (348)
T ss_dssp TTCCCCTTS--CHHHHHHHHHHHHCCCC-HHHHHHHHHHTTCT-TTTTSCGGGSCH-----HHHHHHHHHHHT
T ss_pred cCcccCCCC--CHHHHHHHHHHHcCCCH-HHHHHHHHHHcCCc-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 986433333 33333211 11112 27789999999997 567899999999 999999999874
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=1.7e-29 Score=214.60 Aligned_cols=131 Identities=22% Similarity=0.271 Sum_probs=105.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------------e
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 119 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------------~ 119 (198)
+|+++||++.|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999994 567999999999999999999999999999999999999999999988652 2
Q ss_pred eEEEeccccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 120 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.|+|++|++.....+ ++.+++.. ...+. ..+++.++|+.+++. +..++++.+||| ||||||+||++
T Consensus 82 ~ig~v~Q~~~l~~~l--tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSG-----Gq~QRvalArA 153 (372)
T 1g29_1 82 DIAMVFQSYALYPHM--TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSG-----GQRQRVALGRA 153 (372)
T ss_dssp SEEEECSCCCCCTTS--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCH-----HHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCH-----HHHHHHHHHHH
Confidence 499999986433233 33333221 11111 235688999999996 567899999999 99999999987
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 154 L 154 (372)
T 1g29_1 154 I 154 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=1.1e-29 Score=215.68 Aligned_cols=131 Identities=19% Similarity=0.265 Sum_probs=104.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++||++.|+ +..+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 599999999994 567999999999999999999999999999999999999999999998763 2499999
Q ss_pred cccCCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++... ...++.+++.... .+.. .+++.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 90 Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSG-----Gq~QRvalArAL 156 (372)
T 1v43_A 90 QSYAVW--PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSG-----GQRQRVAVARAI 156 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCS-----SCHHHHHHHHHH
T ss_pred cCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 986432 2335555543221 1122 35688999999996 567889999999 999999999874
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=3.1e-29 Score=202.38 Aligned_cols=131 Identities=27% Similarity=0.384 Sum_probs=102.8
Q ss_pred eEEEEeeEEEcC-CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 55 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 55 ~i~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
.|+++||++.|+ +...+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 589999999993 3467999999999999999999999999999999999999999999998762 1499
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----------CccccccCCCCCChHHHHHhhc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----------QPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSG~~ls~Ge~~rv~la 191 (198)
|++|++.. +. .++.+++.........+++.++++.+++.. ..+ +++.+||| ||||||+||
T Consensus 87 ~v~Q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSg-----Gq~qRv~iA 157 (247)
T 2ff7_A 87 VVLQDNVL-LN--RSIIDNISLANPGMSVEKVIYAAKLAGAHD-FISELREGYNTIVGEQGAGLSG-----GQRQRIAIA 157 (247)
T ss_dssp EECSSCCC-TT--SBHHHHHTTTCTTCCHHHHHHHHHHHTCHH-HHHTSTTGGGCBCSTTTTCCCH-----HHHHHHHHH
T ss_pred EEeCCCcc-cc--ccHHHHHhccCCCCCHHHHHHHHHHhChHH-HHHhCcchhhhhhhCCCCCCCH-----HHHHHHHHH
Confidence 99998643 32 366666543222344667788888888853 222 23456666 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 158 raL 160 (247)
T 2ff7_A 158 RAL 160 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=3.8e-29 Score=207.46 Aligned_cols=137 Identities=23% Similarity=0.316 Sum_probs=105.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++||++.|++..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..|+
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 46999999999965677999999999999999999999999999999999999999999998863 2499
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCcc------ccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM------YTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~------~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. + ..++.+++.........+++.+++..+++.... ...+ ..-.|.+|||||||||+||++-
T Consensus 132 ~v~Q~~~l-f--~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i-~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL 205 (306)
T 3nh6_A 132 VVPQDTVL-F--NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI-MAFPEGYRTQVGERGLKLSGGEKQRVAIARTI 205 (306)
T ss_dssp EECSSCCC-C--SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHH-HHSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EEecCCcc-C--cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHH-HhccchhhhHhcCCcCCCCHHHHHHHHHHHHH
Confidence 99999642 2 346777765443344567778888888775322 1111 1112344555999999999874
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=2.8e-29 Score=202.16 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=102.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~~ 123 (198)
+|+++||++.|+++.++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999943467999999999999999999999999999999999999999999998752 14899
Q ss_pred eccccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccC-----------ccccccCCCCCChHHHHHhhc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~-----------~~~~LSG~~ls~Ge~~rv~la 191 (198)
++|++.. +. .++.+++... ......+++.++++.+++.. ..++ ++.+||| ||||||+||
T Consensus 81 v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSg-----Gq~qrv~lA 151 (243)
T 1mv5_A 81 VSQDSAI-MA--GTIRENLTYGLEGDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISG-----GQRQRLAIA 151 (243)
T ss_dssp ECCSSCC-CC--EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCH-----HHHHHHHHH
T ss_pred EcCCCcc-cc--ccHHHHHhhhccCCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCH-----HHHHHHHHH
Confidence 9998642 22 3666665432 12345667888999998863 3232 3455666 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 152 ral 154 (243)
T 1mv5_A 152 RAF 154 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=2.9e-29 Score=204.24 Aligned_cols=129 Identities=20% Similarity=0.352 Sum_probs=104.3
Q ss_pred eEEEEeeEEEcCCC---CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------eeEE-
Q 029133 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA- 122 (198)
Q Consensus 55 ~i~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------~~i~- 122 (198)
+|+++|+++.|++. +.+|+++||+|+ |++++|+|||||||||||++|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 47899999999531 579999999999 9999999999999999999999999 99999998763 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. ..++.+++.. .......+++.++++.+++..+..++++.+||| ||||||+||++.
T Consensus 79 ~v~Q~~~l----~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg-----GqkqRv~lAraL 143 (263)
T 2pjz_A 79 NLPEAYEI----GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSA-----GQSVLVRTSLAL 143 (263)
T ss_dssp CCGGGSCT----TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCH-----HHHHHHHHHHHH
T ss_pred EeCCCCcc----CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99998643 3344433321 111345678899999999962456889999999 999999999874
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=3.1e-29 Score=201.62 Aligned_cols=128 Identities=21% Similarity=0.256 Sum_probs=102.6
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc---------eeEEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~---------~~i~~~~ 125 (198)
+|+++||++.|+ . +|+|+||+|++ ++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 478999999994 3 59999999999 999999999999999999999999999999998763 2489999
Q ss_pred cccCCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 126 QHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|++... ...++.+++..... + ...+++.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 77 q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----GqkqRv~lAral 141 (240)
T 2onk_A 77 QDYALF--PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSG-----GERQRVALARAL 141 (240)
T ss_dssp SSCCCC--TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCH-----HHHHHHHHHHHH
T ss_pred CCCccC--CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 986432 23345454432211 1 1246688999999996 466889999999 999999999874
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=4.8e-29 Score=203.43 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=101.8
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCeEEecCce-----------
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV----------- 119 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~--~~p~~G~i~~~~~~----------- 119 (198)
.++|+++||++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+ ++|++|+|.+++..
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 45799999999994 56799999999999999999999999999999999999 47899999987631
Q ss_pred -eEEEeccccCCCCCCCCcHHHHHH----H---hCCCCc----HHHHHHHHHhcCCCcccccCccc-cccCCCCCChHHH
Q 029133 120 -RIAVFSQHHVDGLDLSSNPLLYMM----R---CFPGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGFGCSGGTNS 186 (198)
Q Consensus 120 -~i~~~~q~~~~~~~~~~~~~~~~~----~---~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSG~~ls~Ge~~ 186 (198)
.++|++|++.....++...+..+. . ...... .+++.++++.+++.....++++. +||| ||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg-----Gq~Q 171 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG-----GEKK 171 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH-----HHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH-----HHHH
Confidence 389999986432222222111111 0 111111 35678999999996445677776 5999 9999
Q ss_pred HHhhcccc
Q 029133 187 RPCFVPRR 194 (198)
Q Consensus 187 rv~la~~~ 194 (198)
||+||++-
T Consensus 172 Rv~iAraL 179 (267)
T 2zu0_C 172 RNDILQMA 179 (267)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=2.9e-29 Score=202.91 Aligned_cols=134 Identities=20% Similarity=0.234 Sum_probs=98.6
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCeEEecCce------------e
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------R 120 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~--~~p~~G~i~~~~~~------------~ 120 (198)
+|+++||++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.+++.. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 689999999995 56799999999999999999999999999999999999 78999999987631 2
Q ss_pred EEEeccccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCcccc-ccCCCCCChHHHHHhhcc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYT-LSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~-LSG~~ls~Ge~~rv~la~ 192 (198)
++|++|++.....++......+.. ..... ..+++.++++.+++..+..++++.+ ||| ||||||+||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg-----GqkQrv~iAr 156 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSG-----GEKKRNEILQ 156 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC---------HHHHHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH-----HHHHHHHHHH
Confidence 789999864322222222111111 11111 1356788999999953556888888 999 9999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+-
T Consensus 157 aL 158 (250)
T 2d2e_A 157 LL 158 (250)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=3.3e-28 Score=194.34 Aligned_cols=130 Identities=24% Similarity=0.357 Sum_probs=98.1
Q ss_pred CeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 54 ~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.+|+++||++.|++ +.++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++.. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence 37999999999952 46799999999999999999999999999999999999999999999987 58999998642 2
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
. .++.+++.... ......+.+++..+++.... .++++.+||| ||||||+||++.
T Consensus 82 ~--~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSg-----Gqkqrv~lAral 145 (229)
T 2pze_A 82 P--GTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG-----GQRARISLARAV 145 (229)
T ss_dssp S--BCHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCH-----HHHHHHHHHHHH
T ss_pred C--CCHHHHhhccC-CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCH-----HHHHHHHHHHHH
Confidence 2 36666654322 12233445566666654211 1122355666 999999999874
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=197.49 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=97.1
Q ss_pred eEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 55 ~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
+|+++||++.|++ +.++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++. .
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~-~-- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW-I-- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC-C--
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc-C--
Confidence 5899999999953 46799999999999999999999999999999999999999999999987 5899999863 2
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCccccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
...++.+++..... .......+++..+++.. ...++++.+||| ||||||+||++-
T Consensus 78 ~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSg-----GqkqRv~lAraL 142 (237)
T 2cbz_A 78 QNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG-----GQKQRVSLARAV 142 (237)
T ss_dssp CSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCH-----HHHHHHHHHHHH
T ss_pred CCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCH-----HHHHHHHHHHHH
Confidence 24466666543211 11222334444443321 113566777777 999999999864
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=2.3e-28 Score=197.55 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=102.9
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce-----------eEEE
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~-----------~i~~ 123 (198)
+|+++||++. .+|+++||+|++|++++|+|||||||||||++|+|+++|+ |+|.+++.. .++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 6899999976 5899999999999999999999999999999999999999 999987631 4999
Q ss_pred eccccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 124 FSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++... ...++.+++.... .....+++.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 78 v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg-----Gq~qrv~lAraL 141 (249)
T 2qi9_C 78 LSQQQTPP--FATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSG-----GEWQRVRLAAVV 141 (249)
T ss_dssp ECSCCCCC--TTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCH-----HHHHHHHHHHHH
T ss_pred ECCCCccC--CCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 99986432 2345555544221 112367788999999996 566888999999 999999999864
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=1.4e-28 Score=201.02 Aligned_cols=132 Identities=24% Similarity=0.379 Sum_probs=101.6
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
.+|+++||++.|++ ...+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 47999999999954 257999999999999999999999999999999999999999999998763 14
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCC-c-H--------HHHHHHHHhc--CCCcccccCccccccCCCCCChHHHHH
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGV-P-E--------QKLRAHLGSF--GVTGNLALQPMYTLSGFGCSGGTNSRP 188 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~-~-~--------~~~~~~L~~~--~l~~~~~~~~~~~LSG~~ls~Ge~~rv 188 (198)
|+|++|++.. +. .++.+++....... . . ..+.+++..+ ++. ...++++.+||| ||||||
T Consensus 95 i~~v~Q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSg-----Gq~QRv 165 (271)
T 2ixe_A 95 VAAVGQEPLL-FG--RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSG-----GQRQAV 165 (271)
T ss_dssp EEEECSSCCC-CS--SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCH-----HHHHHH
T ss_pred EEEEecCCcc-cc--ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCH-----HHHHHH
Confidence 9999998642 33 36666654322111 1 1 1134556666 564 345677888888 999999
Q ss_pred hhcccc
Q 029133 189 CFVPRR 194 (198)
Q Consensus 189 ~la~~~ 194 (198)
+||++-
T Consensus 166 ~lAraL 171 (271)
T 2ixe_A 166 ALARAL 171 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=6.7e-28 Score=195.93 Aligned_cols=132 Identities=24% Similarity=0.273 Sum_probs=101.6
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
.+|+++||++.|++. .++|+++||+|++|++++|+|||||||||||++|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999643 4699999999999999999999999999999999999987 899998763 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCccccccCCCCCChHHHHHhh
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
++|++|++.. +. .++.+++.........+++.++++.+++.... .++++.+||| ||||||+|
T Consensus 95 i~~v~Q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSg-----GqkqRv~l 166 (260)
T 2ghi_A 95 IGIVPQDTIL-FN--ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG-----GERQRIAI 166 (260)
T ss_dssp EEEECSSCCC-CS--EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCH-----HHHHHHHH
T ss_pred EEEEcCCCcc-cc--cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCH-----HHHHHHHH
Confidence 9999998643 32 36666654322223456677888888774321 1234566666 99999999
Q ss_pred cccc
Q 029133 191 VPRR 194 (198)
Q Consensus 191 a~~~ 194 (198)
|++-
T Consensus 167 AraL 170 (260)
T 2ghi_A 167 ARCL 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 36
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=2e-27 Score=212.84 Aligned_cols=139 Identities=20% Similarity=0.242 Sum_probs=104.8
Q ss_pred CCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
...|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 346999999999963 457999999999999999999999999999999999999999999998763 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----ccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----PMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++.. + ..+..+++....+..+++++.++++..++.+..... ..-.-.|.+|||||||||+||++-
T Consensus 419 i~~v~Q~~~l-f--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 419 ISAVPQETVL-F--SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp EEEECSSCCC-C--SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCcC-c--CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH
Confidence 9999999742 2 347777765443445567777777777764321110 011122344555999999999874
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=204.35 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=107.0
Q ss_pred CCeEEEEeeEEEcC-CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
...|+++||++.|+ +...+|+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.+++. ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995 34679999999999999999999999999999999999998 9999998763 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccc------cCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL------SGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~L------SG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++.. +. .++.+++.. ......+++.++++.+++. +..++++.++ .|.+|||||||||+||++-
T Consensus 96 ig~v~Q~~~l-f~--~tv~enl~~-~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 96 FGVIPQKVFI-FS--GTFRKNLDP-NAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp EEEESCCCCC-CS--EEHHHHHCT-TCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCccc-Cc--cCHHHHhhh-ccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 9999999743 32 466666542 2234577889999999996 4567777761 1122333999999999874
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=1e-26 Score=208.00 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=106.1
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999643 67999999999999999999999999999999999999999999998762 259
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCcccc------ccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYT------LSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~------LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. ++ .++.+++.... +..+++++.++++.+++.+ ..++.+.. -.|.+|||||||||+||++-
T Consensus 420 ~~v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 420 ALVSQNVHL-FN--DTIANNIAYAAEGEYTREQIEQAARQAHAME-FIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred EEEcCCCcc-cc--ccHHHHHhccCCCCCCHHHHHHHHHHCCCHH-HHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 999999743 22 36666654332 3456778899999998863 22222211 12345666999999999874
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=1.5e-26 Score=206.94 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=106.7
Q ss_pred CeEEEEeeEEEcCCC-CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeE
Q 029133 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i 121 (198)
..|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643 67999999999999999999999999999999999999999999998763 249
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCcc------ccccCCCCCChHHHHHhhcccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPM------YTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~------~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+|++|++.. ++ .+..+++.... +..+++++.++++.+++.+ ..++.+ -.-.|.+|||||||||+||++-
T Consensus 420 ~~v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 420 ALVSQNVHL-FN--DTVANNIAYARTEEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp EEECSSCCC-CS--SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEccCCcC-CC--CCHHHHHhccCCCCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 999999743 32 36666665432 3456788899999998853 222211 1112445666999999999874
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.94 E-value=1.1e-26 Score=207.73 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=106.9
Q ss_pred CCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
...|+++|+++.|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 346999999999964 357999999999999999999999999999999999999999999999873 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccc------cccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY------TLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSG~~ls~Ge~~rv~la~~~ 194 (198)
++|++|++.. + ..+..+++....+..+++++.++++.+++.+.. +..+. .-.|.+|||||||||+||++-
T Consensus 417 i~~v~Q~~~l-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 417 IGLVQQDNIL-F--SDTVKENILLGRPTATDEEVVEAAKMANAHDFI-MNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp EEEECSSCCC-C--SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHH-HTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred eEEEeCCCcc-C--cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH-HhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 9999999642 2 347777766544445677788888888875322 11111 122345666999999999874
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=4.4e-27 Score=226.35 Aligned_cols=137 Identities=22% Similarity=0.317 Sum_probs=110.5
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
..|+++||+++|+++ .++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+++. ..
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 469999999999643 46999999999999999999999999999999999999999999999873 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
|+|+||++.. +..+..+++... ....+++++.++++..++.+... +..++ -.|.+||||||||+||||
T Consensus 1155 i~~V~Qdp~L---F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg-e~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1155 IAIVSQEPTL---FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG-DRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp EEEECSSCCC---CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET-TTSCSSCHHHHHHHHHHH
T ss_pred eEEECCCCEe---eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec-CCCcccCHHHHHHHHHHH
Confidence 9999999753 345777776532 13457889999999999853221 22222 356789999999999999
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+-
T Consensus 1231 Al 1232 (1321)
T 4f4c_A 1231 AL 1232 (1321)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=3.5e-27 Score=211.67 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=106.3
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
..|+++||++.|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 46999999999965667999999999999999999999999999999999999999999999873 2599
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccc------cCCCCCChHHHHHhhcccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL------SGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~L------SG~~ls~Ge~~rv~la~~~ 194 (198)
|++|++.. + ..+..+++....+..+++++.++++.+++.+ ..+..+..+ .|.+|||||||||+||++-
T Consensus 433 ~v~Q~~~l-f--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral 506 (598)
T 3qf4_B 433 IVLQDTIL-F--STTVKENLKYGNPGATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506 (598)
T ss_dssp EECTTCCC-C--SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred EEeCCCcc-c--cccHHHHHhcCCCCCCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 99999742 2 3467777654433445667788888888753 222222111 2345666999999999874
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=2e-26 Score=221.89 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=113.2
Q ss_pred CeEEEEeeEEEcCC--CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
..|+++||+|.|++ +.++|+|+||+|++|+++|||||+|||||||+++|+|+++|++|+|.+++. ..
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 46999999999964 457999999999999999999999999999999999999999999999873 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----CccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+|++|++.. +..+..+++....+..+++++.++++..++.++... ...-.-.|.+|||||||||+|||+-
T Consensus 494 i~~v~Q~~~L---f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 494 VAVVSQEPAL---FNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp EEEECSSCCC---CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred ccccCCccee---eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999753 356777887655556778899999999988543221 1222235678888999999999974
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=6e-26 Score=203.51 Aligned_cols=135 Identities=23% Similarity=0.325 Sum_probs=104.8
Q ss_pred EEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------eeEE
Q 029133 56 ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (198)
Q Consensus 56 i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~i~ 122 (198)
|+++||++.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999642 46999999999999999999999999999999999999999999998763 2499
Q ss_pred EeccccCCCCCCCCcHHHHHHHhCCC---CcHHHHHHHHHhcCCCccc------ccCccccccCCCCCChHHHHHhhccc
Q 029133 123 VFSQHHVDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNL------ALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~l~~~~------~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
|++|++.. ++ .++.+++....+. .+++++.++++.+++.+.. .+.+++ -.|.+|||||||||+||++
T Consensus 422 ~v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~-~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 422 TVSQEPIL-FS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG-EKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp EECSSCCC-CS--SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCS-SSSCCCCHHHHHHHHHHHH
T ss_pred EEccCCcc-cC--CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHH
Confidence 99999743 32 4666666543222 4678889999999885321 122221 1234566699999999987
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 498 l 498 (595)
T 2yl4_A 498 L 498 (595)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=2.2e-25 Score=214.16 Aligned_cols=137 Identities=22% Similarity=0.270 Sum_probs=106.1
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
..|+++||++.|++. .++|+|+||+|++|++++||||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 469999999999642 46999999999999999999999999999999999999999999999873 24
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------cCccccccCCCCCChHHHHHhhcccc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|+|++|++.. + ..++.+++.......+++++.++++..++.+... +..+ .-.|.+|||||||||+||++-
T Consensus 466 i~~v~Q~~~l-~--~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 466 IGVVSQEPVL-F--ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLV-GERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp EEEECSSCCC-C--SSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCC-SSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCcc-C--CccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccc-cCCCCccCHHHHHHHHHHHHH
Confidence 9999999753 2 3466666655444456777888888777643211 1111 123456777999999999874
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=3.4e-26 Score=188.56 Aligned_cols=126 Identities=27% Similarity=0.387 Sum_probs=85.2
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
+.|+++||++.+ ..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++.. +.
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~~ 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-MP 112 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-CS
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-Cc
Confidence 468999999864 4689999999999999999999999999999999999999999999876 58999998642 32
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCccccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.++.+++. .. ......+.+++..+++..... ++++.+||| ||||||+||++.
T Consensus 113 --~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSg-----Gq~QRv~lAraL 174 (290)
T 2bbs_A 113 --GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG-----GQRARISLARAV 174 (290)
T ss_dssp --SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCH-----HHHHHHHHHHHH
T ss_pred --ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCH-----HHHHHHHHHHHH
Confidence 36666665 22 123334555666666642211 112345555 999999999874
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=2.9e-25 Score=196.87 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=104.0
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.++++++++++.|+ + ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+ ...++|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcCCC
Confidence 46899999999994 3 4789999999999999999999999999999999999999999986 346999999864333
Q ss_pred CCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
. .++.+.+... ......+.+.++|+.+++. ...++++.+||| ||||||+||++-
T Consensus 361 ~--~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSG-----Ge~qrv~lAraL 416 (538)
T 1yqt_A 361 E--GTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSG-----GELQRVAIAATL 416 (538)
T ss_dssp S--SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCH-----HHHHHHHHHHHH
T ss_pred C--CcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 3 3333322211 0011346678899999996 567899999999 999999999864
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=4.8e-25 Score=211.79 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=105.3
Q ss_pred CeEEEEeeEEEcCCC--CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------ee
Q 029133 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------~~ 120 (198)
..|+++||++.|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 469999999999642 36999999999999999999999999999999999999999999998763 25
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCcccc------ccCCCCCChHHHHHhhcc
Q 029133 121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYT------LSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~------LSG~~ls~Ge~~rv~la~ 192 (198)
++|++|++.. + ..++.+++..... ..+++++.++++..++.+ ...+.+.. -.|.+|||||||||+||+
T Consensus 1109 i~~v~Q~~~l-~--~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~-~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A 1109 LGIVSQEPIL-F--DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ-FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp CEEEESSCCC-C--SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHH-HHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred eEEECCCCcc-c--cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHH-HHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence 9999999742 2 4566666643221 345677888888877753 22222211 235567779999999998
Q ss_pred cc
Q 029133 193 RR 194 (198)
Q Consensus 193 ~~ 194 (198)
+-
T Consensus 1185 al 1186 (1284)
T 3g5u_A 1185 AL 1186 (1284)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=3.6e-25 Score=198.58 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=103.7
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.++++++++++.|+ + ..|++++|+|++||+++|+|||||||||||++|+|+++|++|+|.+ ...++|++|++....
T Consensus 355 ~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccCCC
Confidence 46899999999994 3 4789999999999999999999999999999999999999999976 346999999864333
Q ss_pred CCCCcHHHHHHHh-CCC-CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.. ++.+.+... ... ...+.+.++|+.+++. +..++++.+||| ||||||+||++-
T Consensus 431 ~~--tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSG-----Ge~QRv~iAraL 486 (607)
T 3bk7_A 431 EG--TVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSG-----GELQRVAIAATL 486 (607)
T ss_dssp SS--BHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCH-----HHHHHHHHHHHH
T ss_pred CC--cHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 33 333322211 000 1245678899999997 567899999999 999999999864
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.91 E-value=8.3e-25 Score=203.58 Aligned_cols=76 Identities=42% Similarity=0.788 Sum_probs=69.8
Q ss_pred CCeEEEEeeEEEcCC-CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEecccc
Q 029133 53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 128 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~ 128 (198)
.++|+++|+++.|++ .+++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++..+++|++|+.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~ 745 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 745 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccch
Confidence 468999999999964 2579999999999999999999999999999999999999999999998777899999863
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=3.7e-24 Score=189.66 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=104.6
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
.+.++++++++.|+ + ..|.++||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ...++|++|+....
T Consensus 267 ~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~i~~~~q~~~~~- 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE-KQILSYKPQRIFPN- 342 (538)
T ss_dssp CEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS-CCCEEEECSSCCCC-
T ss_pred cceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC-CeeeEeechhcccc-
Confidence 45799999999995 3 56888899999999999999999999999999999999999999865 34689999986432
Q ss_pred CCCCcHHHHHHHhCC---CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRCFP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
...++..++..... ......+.++++.+++. +..++++.+||| ||||||+||++-
T Consensus 343 -~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSG-----Gq~QRv~iAraL 400 (538)
T 3ozx_A 343 -YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSG-----GELQKLYIAATL 400 (538)
T ss_dssp -CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCH-----HHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCH-----HHHHHHHHHHHH
Confidence 23344444332211 12335678899999996 567899999999 999999999874
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-22 Score=182.07 Aligned_cols=126 Identities=21% Similarity=0.331 Sum_probs=97.6
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCC
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~G-----e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (198)
+++++.|++...+++++||++.+| |+++|+|||||||||||++|+|+++|++|+.. ....++|++|+....+.
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEecccccccCC
Confidence 567778854445789999999999 88999999999999999999999999999842 24469999998543332
Q ss_pred CCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 134 LSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.++...+..... ......+.++++.+++. +..++++.+||| ||||||+||++.
T Consensus 428 --~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSG-----GqkQRv~iAraL 482 (608)
T 3j16_B 428 --GTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSG-----GELQRVAIVLAL 482 (608)
T ss_dssp --SBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCH-----HHHHHHHHHHHT
T ss_pred --ccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCH-----HHHHHHHHHHHH
Confidence 344443332221 23456678899999997 567899999999 999999999874
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=6.5e-23 Score=183.96 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=97.2
Q ss_pred eEEE--------EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE---------EecC
Q 029133 55 IISF--------SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA 117 (198)
Q Consensus 55 ~i~~--------~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i---------~~~~ 117 (198)
+|++ +||++.|++...+|.++| +|++||+++|+|||||||||||++|+|+++|++|++ .+.+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5788 899999954335899999 999999999999999999999999999999999985 1221
Q ss_pred -------------ceeEEEeccccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCCh
Q 029133 118 -------------KVRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG 183 (198)
Q Consensus 118 -------------~~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G 183 (198)
...+++++|....... ...++.+.+... ...+++.++|+.+++. +..++++.+||| |
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~-~~~~~~~~~LSG-----G 232 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELE-NVLDRELHQLSG-----G 232 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCT-TGGGSBGGGCCH-----H
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCC-chhCCChhhCCH-----H
Confidence 1246777776321111 112444433321 1234577899999997 567899999999 9
Q ss_pred HHHHHhhcccc
Q 029133 184 TNSRPCFVPRR 194 (198)
Q Consensus 184 e~~rv~la~~~ 194 (198)
|||||+||++-
T Consensus 233 ekQRvaIAraL 243 (607)
T 3bk7_A 233 ELQRVAIAAAL 243 (607)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=8.1e-23 Score=181.22 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=93.3
Q ss_pred EEE-EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE---------EecC--------
Q 029133 56 ISF-SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA-------- 117 (198)
Q Consensus 56 i~~-~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i---------~~~~-------- 117 (198)
.++ +||++.|++...++.++| +|++||+++|+||||||||||||+|+|+++|++|++ .+.+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 589999954335899999 999999999999999999999999999999999985 1221
Q ss_pred -----ceeEEEeccccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 118 -----KVRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 118 -----~~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
...+++++|....... ...+....+... ...+++.++|+.+++. ...++++.+||| ||||||+||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~~~~~~~~~l~~lgl~-~~~~~~~~~LSg-----GekQRv~iA 170 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---DETGKLEEVVKALELE-NVLEREIQHLSG-----GELQRVAIA 170 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---CSSSCHHHHHHHTTCT-TTTTSBGGGCCH-----HHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---hHHHHHHHHHHHcCCC-hhhhCChhhCCH-----HHHHHHHHH
Confidence 1246787776421111 111333333221 1124577899999997 467899999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 171 raL 173 (538)
T 1yqt_A 171 AAL 173 (538)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=5.3e-21 Score=178.11 Aligned_cols=129 Identities=22% Similarity=0.378 Sum_probs=95.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCCCeEEecCceeEEEeccccCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g-~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (198)
..|...++++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|+.. ..
T Consensus 434 ~~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~ 507 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GT 507 (986)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CC
T ss_pred ceeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-cc
Confidence 3567779999994 5679999999999999999999999999999999994 22 110 0111234788888642 12
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
....++..++.....+. .+++.++|+.+++.....++++.+||| ||||||+||++-
T Consensus 508 ~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSG-----GqkQRvaLArAL 563 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSG-----GWKMKLALARAV 563 (986)
T ss_dssp CTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCH-----HHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCH-----HHHHHHHHHHHH
Confidence 23345555543211122 678899999999964567889999999 999999999864
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.5e-21 Score=169.83 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=86.2
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec-----------Cc----------
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-----------AK---------- 118 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~-----------~~---------- 118 (198)
+++++|+.....+++++ ++++|++++|+||||||||||||+|+|+++|++|+|... +.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 45788865445677777 689999999999999999999999999999999998311 10
Q ss_pred ---eeEEEeccccCC----CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhc
Q 029133 119 ---VRIAVFSQHHVD----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFV 191 (198)
Q Consensus 119 ---~~i~~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la 191 (198)
....+.+|.... ......+....+... .....+++.++++.+++. ...++++.+||| ||||||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg-----Ge~Qrv~iA 233 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLE-NVLKRDIEKLSG-----GELQRFAIG 233 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCT-GGGGSCTTTCCH-----HHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCc-chhCCChHHCCH-----HHHHHHHHH
Confidence 001122221100 000001111111111 223457789999999997 567899999999 999999999
Q ss_pred ccc
Q 029133 192 PRR 194 (198)
Q Consensus 192 ~~~ 194 (198)
++.
T Consensus 234 raL 236 (608)
T 3j16_B 234 MSC 236 (608)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=1.2e-19 Score=160.70 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=82.8
Q ss_pred eeEEEcCCCCcceeeeeEEE-eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE-----------EecC----------
Q 029133 60 DASFGYPGGPILFKNLNFGI-DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSA---------- 117 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i-~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i-----------~~~~---------- 117 (198)
+.+++|+... |+-..|.+ ++||++||+||||||||||||+|+|+++|++|+| .+.+
T Consensus 4 ~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 5678895433 44444444 5999999999999999999999999999999988 2221
Q ss_pred ---ceeEEEeccccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 118 ---KVRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 118 ---~~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
...+....|....... ...+....+.... ..+.+.++++.+++. ...++++.+||| ||||||+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSg-----Ge~Qrv~iA~a 152 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMT-NLWNKDANILSG-----GGLQRLLVAAS 152 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCG-GGTTSBGGGCCH-----HHHHHHHHHHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCc-hhhcCChhhCCH-----HHHHHHHHHHH
Confidence 1123333333211000 1123332222211 123567889999996 567899999999 99999999987
Q ss_pred c
Q 029133 194 R 194 (198)
Q Consensus 194 ~ 194 (198)
-
T Consensus 153 L 153 (538)
T 3ozx_A 153 L 153 (538)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=1.2e-18 Score=158.19 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=68.6
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhcCCCCCCCeEE-------ecCc--
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL---------------------KLIAGELQPSSGTVF-------RSAK-- 118 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl---------------------k~l~g~~~p~~G~i~-------~~~~-- 118 (198)
..+|+||||+|++||+++|+||||||||||+ +++.++..|+.|.|. +++.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 999999999966553 2221
Q ss_pred -----eeEEEeccccCCC-------------------CCCCCcHHHHHHHhC--CCC----cH------HHHHHHHHhcC
Q 029133 119 -----VRIAVFSQHHVDG-------------------LDLSSNPLLYMMRCF--PGV----PE------QKLRAHLGSFG 162 (198)
Q Consensus 119 -----~~i~~~~q~~~~~-------------------~~~~~~~~~~~~~~~--~~~----~~------~~~~~~L~~~~ 162 (198)
..++|++|..... ..++......+.... ... .. .+..++|+.++
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 1234444432100 001111111110000 000 00 11124588899
Q ss_pred CCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 163 VTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 163 l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
|.....++++.+||| ||||||+||++.
T Consensus 191 L~~~~~~~~~~~LSG-----Ge~QRv~iArAL 217 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSG-----GEAQRIRLATQI 217 (670)
T ss_dssp CTTCCTTCBGGGSCH-----HHHHHHHHHHHH
T ss_pred CchhhhcCCcccCCH-----HHHHHHHHHHHH
Confidence 975446889999999 999999999875
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.1e-22 Score=173.57 Aligned_cols=124 Identities=11% Similarity=0.060 Sum_probs=89.4
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-e-EEecCc--eeEEEecccc
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-T-VFRSAK--VRIAVFSQHH 128 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G-~-i~~~~~--~~i~~~~q~~ 128 (198)
.++++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++++. ..++|++|+.
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 45778888888883 68999999999999999999999999999999999999 8 988753 3588999875
Q ss_pred CC---C--CCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 129 VD---G--LDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 129 ~~---~--~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
.. . ++...+. +.... ......+.+.+++..+++.. ..+ +.+||| ||||||+||++
T Consensus 189 ~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSg-----Gq~qrlalAra 249 (460)
T 2npi_A 189 SATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYL-----ECISQLGQVVG 249 (460)
T ss_dssp EEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHH-----HHHHHHHHHHH
T ss_pred hhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhH-----HHHHHHHHHHH
Confidence 21 1 1111111 10000 00112234556788888863 333 778888 99999999987
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=2.6e-17 Score=149.27 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=32.2
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
..+|+||||+|++||+++|+||||||||||+++|+
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 35899999999999999999999999999998754
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.68 E-value=1.7e-19 Score=141.79 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=44.7
Q ss_pred CCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec--------CceeEEEecccc
Q 029133 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--------AKVRIAVFSQHH 128 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~--------~~~~i~~~~q~~ 128 (198)
.+.+|+++ ++|++++|+|||||||||||++|+|+ +|++|+|... ....++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 45688885 89999999999999999999999999 9999998431 112477888765
No 62
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.67 E-value=1.9e-19 Score=149.68 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=90.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFG-----------------------IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~-----------------------i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
..|.+++|++.|. ++++++++. +.+|+++||+||||||||||+++|+|++.|+.
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 4688999999993 567777764 89999999999999999999999999999987
Q ss_pred CeEEecCceeEEEeccccCCCCCCCCcHHHHHHHh----CC-CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 111 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC----FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 111 G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
|. ..++|++|+... ++ .+...++... .+ ..+.+.+.++|..++ .+ ..+.++.+||| ||+
T Consensus 119 G~------~~v~~v~qd~~~-~~--~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~-----G~~ 182 (312)
T 3aez_A 119 HH------PRVDLVTTDGFL-YP--NAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSH-----LHY 182 (312)
T ss_dssp TC------CCEEEEEGGGGB-CC--HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEET-----TTT
T ss_pred CC------CeEEEEecCccC-Cc--ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCCh-----hhh
Confidence 74 358999998542 22 1433332211 11 123467788888887 32 33467789999 999
Q ss_pred HHHhhcccc
Q 029133 186 SRPCFVPRR 194 (198)
Q Consensus 186 ~rv~la~~~ 194 (198)
|||++|++.
T Consensus 183 qRv~~a~al 191 (312)
T 3aez_A 183 DIIPGAEQV 191 (312)
T ss_dssp EEEEEEEEE
T ss_pred hhhhhHHHh
Confidence 999998653
No 63
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.66 E-value=8.9e-20 Score=150.97 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=55.6
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEecccc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 128 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~ 128 (198)
.|++++|++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~ 162 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKS 162 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTS
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCcc
Confidence 588899999994 57999999999999999999999999999999999999 89883 5667764
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.65 E-value=5.8e-16 Score=142.89 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=41.9
Q ss_pred CCeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHH-HhcCC
Q 029133 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL-IAGEL 106 (198)
Q Consensus 53 ~~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~-l~g~~ 106 (198)
.+.|+++++++. +|+||||+|++|+++||+|+||||||||+++ |+|++
T Consensus 500 ~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 500 AGWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp SCEEEEEEEEET------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred CceEEEEeeeec------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 467999999752 5999999999999999999999999999996 76543
No 65
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.62 E-value=4.9e-17 Score=128.37 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=30.6
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
..-|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 34689999999999999999999999999999999998 6 88877
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.60 E-value=9.9e-16 Score=142.20 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=39.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
+.|++++++. ..|+||||+|+.|+++||+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 5789998852 2689999999999999999999999999999853
No 67
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.60 E-value=1.3e-16 Score=138.07 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=57.6
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
++++++++++.|+.+..+++++ |+|.+|++++|+|||||||||||++|+|+.+|+.|.|.+.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 5688999999995356799999 99999999999999999999999999999999999998755
No 68
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.59 E-value=3.4e-17 Score=133.45 Aligned_cols=101 Identities=11% Similarity=0.007 Sum_probs=55.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc--------eeEEEeccccCCCCCCCCcHHHHHHHh-CCCCcHHHH
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKL 154 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 154 (198)
.++|+|||||||||||++|+|+..|++|+|.+++. ..++|++|+......++......+... ......+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 47999999999999999999999999999987542 358999997532222221111111111 111122334
Q ss_pred HHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 155 RAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 155 ~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+++. ....+..+.+||| ||+|||++|++.
T Consensus 84 ~~~~~-----~~~~~~~~~~LS~-----G~~qrv~iaRal 113 (270)
T 3sop_A 84 EKYIN-----EQYEKFLKEEVNI-----ARKKRIPDTRVH 113 (270)
T ss_dssp HHHHH-----HHHHHHHHHHSCT-----TCCSSCCCCSCC
T ss_pred HHHHH-----HHHHhhhHHhcCc-----ccchhhhhheee
Confidence 44443 2334556788999 999999999863
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.58 E-value=2e-17 Score=142.06 Aligned_cols=112 Identities=11% Similarity=0.018 Sum_probs=79.4
Q ss_pred CcceeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCce--eEEEecc
Q 029133 69 PILFKNLNFGIDLDS--------------------RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIAVFSQ 126 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge--------------------~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~--~i~~~~q 126 (198)
..+++++||+|++|+ +++|+||||||||||||+|+|+++|++|+|.+++.. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999999999876532 2367877
Q ss_pred ccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCCh--HHHHHhhcccc
Q 029133 127 HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGG--TNSRPCFVPRR 194 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~G--e~~rv~la~~~ 194 (198)
+.. ...++......+ . .....+.++|+.+++... +..+. ||+ | |+||++||++-
T Consensus 116 ~~~-~~~ltv~D~~g~--~---~~~~~~~~~L~~~~L~~~--~~~~~-lS~-----G~~~kqrv~la~aL 171 (413)
T 1tq4_A 116 HPN-IPNVVFWDLPGI--G---STNFPPDTYLEKMKFYEY--DFFII-ISA-----TRFKKNDIDIAKAI 171 (413)
T ss_dssp CSS-CTTEEEEECCCG--G---GSSCCHHHHHHHTTGGGC--SEEEE-EES-----SCCCHHHHHHHHHH
T ss_pred ccc-cCCeeehHhhcc--c---chHHHHHHHHHHcCCCcc--CCeEE-eCC-----CCccHHHHHHHHHH
Confidence 642 111211110000 0 112346788999998632 23333 888 9 99999998764
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.57 E-value=1.6e-15 Score=141.26 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=39.0
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
+.|++++++. .+|+||||+|+.|+++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 5799999851 2689999999999999999999999999999853
No 71
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.57 E-value=1.8e-16 Score=133.52 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=56.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
++++++++++.|+.+..+++++ |+|.+|++++|+|||||||||||++|+|+..|+.|.|.+.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 4688899999996356789999 99999999999999999999999999999999999886543
No 72
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.57 E-value=3.1e-16 Score=125.55 Aligned_cols=111 Identities=19% Similarity=0.082 Sum_probs=62.0
Q ss_pred CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec-CceeEEEeccccCCCCCCCCcHHHHHHHh
Q 029133 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMMRC 145 (198)
Q Consensus 67 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~-~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 145 (198)
++..+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ....++|++|+.. ...++......+...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~-~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRF-YKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGG-BCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcC-ccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 444322 1235889998842 222322222211111
Q ss_pred CCC------CcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhh
Q 029133 146 FPG------VPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 190 (198)
Q Consensus 146 ~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~l 190 (198)
... .+.+.+.+.|..+ . .....++..||+ ||+||+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~L~~l--~-~~~~~~~~~ls~-----g~~~r~~~ 127 (245)
T 2jeo_A 85 QYNFDHPDAFDNDLMHRTLKNI--V-EGKTVEVPTYDF-----VTHSRLPE 127 (245)
T ss_dssp CCCTTSGGGBCHHHHHHHHHHH--H-TTCCEEECCEET-----TTTEECSS
T ss_pred CCCCCCcccccHHHHHHHHHHH--H-CCCCeecccccc-----cccCccCc
Confidence 111 2234455666654 1 233457788999 99999976
No 73
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.56 E-value=1.6e-17 Score=125.19 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=50.7
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
+++++.|+ +..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+++
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 45677783 457899999999999999999999999999999999999 9999998754
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.56 E-value=6e-15 Score=126.18 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=34.2
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.+|++++|++.+| +++|+|||||||||||++|+++..
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999 999999999999999999977764
No 75
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=6.5e-15 Score=136.93 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=33.0
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHH
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl 99 (198)
.+.+++++ ...|+||||+|+.|++++|+|+||||||||+
T Consensus 589 ~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 589 SLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred eEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 45555543 2468999999999999999999999999997
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.50 E-value=2.9e-15 Score=113.79 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=28.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 74 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
++||+|++|++++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999754
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.47 E-value=1.1e-15 Score=126.31 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=71.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------------eeEEEeccccCCCCCC
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL 134 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~ 134 (198)
+.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|+.. ....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence 35789999999999999999999999999999999999999987541 13788888753 0222
Q ss_pred CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 135 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 135 ~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
..+..+.+... ....+ ..+++.+|+.+ ..++++.+|| +||++||++-
T Consensus 169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~~-~~~~~~~eLS--------kqr~~iaral 216 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI--------ACKKAVGKIV 216 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCCSS-CCHHHHHHHH--------HHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCc----chHHhcCCCCc-chhHHHHHHH--------HHHHHHHHhh
Confidence 22233322211 01111 12456666653 3345566666 7999988654
No 78
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=3e-14 Score=117.72 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=75.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe---cCc----------e-eEEEeccccCCC-----CCCCC-c
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK----------V-RIAVFSQHHVDG-----LDLSS-N 137 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~---~~~----------~-~i~~~~q~~~~~-----~~~~~-~ 137 (198)
.+..|++++|+||||||||||+|+|+ ++.|++|+|.+ .+. . .++|++|++... ..++. +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~ 239 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence 34569999999999999999999999 99999999987 331 1 368999886321 12221 1
Q ss_pred HHHHHH-------Hh----CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 138 PLLYMM-------RC----FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 138 ~~~~~~-------~~----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
....+. .. +.......+.++|+.++|.....++++..||| .+++++.||+-
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~-----~~~R~~~~~~~ 301 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV-----YLEEIKELCRE 301 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC-----CCTTHHHHSSC
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH-----HHHHHHHHhcc
Confidence 100110 11 12233467899999999975456778899999 99999999873
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.40 E-value=5.8e-15 Score=124.66 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=71.3
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----------------eeEEEeccccCCCCCCC
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~~ 135 (198)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|+.. .....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChh
Confidence 4678999999999999999999999999999999999999987541 13788888642 02222
Q ss_pred CcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 136 SNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 136 ~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
.+..+++... ....+ ..+++.+|+.. ..++++.+|| +||++||++-
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~-~~~~~~~eLS--------kqr~~iaral 273 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI--------ACKKAVGKIV 273 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCSS-CCHHHHHHHH--------HHHHHHHHHS
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCCh-hhhhHHHHHH--------HHHHHHHHHH
Confidence 2233332211 01111 12455666653 3345566666 7899888653
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.40 E-value=2.6e-14 Score=119.47 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=44.8
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
++++++|+|++|+.++|+||||||||||+++|+|+++|++|.|.+++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 78999999999999999999999999999999999999999998764
No 81
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.38 E-value=2.3e-13 Score=118.71 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=44.3
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 479999999999 99999999999999999999999999999998754
No 82
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.37 E-value=1.2e-13 Score=107.59 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=64.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhC---CCCcHHHHH
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF---PGVPEQKLR 155 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 155 (198)
.++|++++|+||||||||||+++|+|++.| .++|++|+.........+......... ...+.+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 578999999999999999999999999876 478899885422111123222211111 123456778
Q ss_pred HHHHhcCCCcccccCccccccCCCCCChHH----HHHhhcc
Q 029133 156 AHLGSFGVTGNLALQPMYTLSGFGCSGGTN----SRPCFVP 192 (198)
Q Consensus 156 ~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~----~rv~la~ 192 (198)
+++..+++.. ..+.|+..+|+ |++ ||+++++
T Consensus 72 ~~l~~~~~~~-~~~~~~~~~s~-----g~~~~~~~~~~~~~ 106 (211)
T 3asz_A 72 EHAQALLRGL-PVEMPVYDFRA-----YTRSPRRTPVRPAP 106 (211)
T ss_dssp HHHHHHHTTC-CEEECCEETTT-----TEECSSCEEECCCS
T ss_pred HHHHHHHcCC-CcCCCcccCcc-----cCCCCCeEEeCCCc
Confidence 8888888864 44568888998 864 5666654
No 83
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.37 E-value=3.5e-14 Score=119.76 Aligned_cols=110 Identities=16% Similarity=0.113 Sum_probs=69.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCeEEec-C-------ceeEEEeccccCCCCCCCCcHHHHH
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRS-A-------KVRIAVFSQHHVDGLDLSSNPLLYM 142 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-p~~G~i~~~-~-------~~~i~~~~q~~~~~~~~~~~~~~~~ 142 (198)
++++++. .+|++++|+||||||||||+++|+|+.. |++|+|... + ...+++++|.... ++ +.+...+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l-~d-tpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV-ID-SPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEE-EE-CHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEe-cC-cccHHHh-
Confidence 4566654 4799999999999999999999999999 999999764 2 2357888886421 11 1111111
Q ss_pred HHhCCCCcH----HHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 143 MRCFPGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 143 ~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
....... ..+.++++.+++. ...+.++.+| | ||+||++||...
T Consensus 282 --~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~l-----S-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --GLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDAD-----P-GCAIREAVENGA 328 (358)
T ss_dssp --CCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSC-----T-TCHHHHHHHHTS
T ss_pred --hhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccC-----C-HHHHHHHHHhcC
Confidence 1112222 2345677777775 3445555555 4 699999998754
No 84
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=1.4e-14 Score=119.61 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=47.0
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCCeEEecC--------ceeEEEeccccC
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSA--------KVRIAVFSQHHV 129 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~-~~p~~G~i~~~~--------~~~i~~~~q~~~ 129 (198)
.+|++.| +++.++++++|+| +|+||||||||||+++|+|. ..|++| +.+.+ ...+++++|...
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 4788899 4577999999998 99999999999999999998 888888 54321 113567766532
Q ss_pred CCCCCC--CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 130 DGLDLS--SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 130 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
....++ .++-... ... ..+..+.++.. +. ...+.++.++|| |+|||+.+|++
T Consensus 74 ~~~~ltv~Dt~g~~~--~~~--~~e~~~~l~~~--l~-~~~~~~~~~~sg-----g~rqrv~~ara 127 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGD--AIN--CRDCFKTIISY--ID-EQFERYLHDESG-----LNRRHIIDNRV 127 (301)
T ss_dssp CCEEEEEEEEC---------------CTTHHHH--HH-HHHHHHHHHHTS-----SCCTTCCCCCC
T ss_pred cccCcchhhhhhhhh--hcC--cHHHHHHHHHH--HH-HHHHHHHHHhCH-----Hhhhhhhhhhh
Confidence 111111 1111100 000 00111111111 11 223467788999 99999998874
No 85
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.34 E-value=1.2e-13 Score=105.72 Aligned_cols=82 Identities=20% Similarity=0.097 Sum_probs=50.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCeEEe-----cCceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFR-----SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~~-----~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+++|+||||||||||+++|+|++... .|.... .....++|++|+.. ...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~~~~------------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GKKKI------------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CCEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HHHHH-------------------
Confidence 68999999999999999999998522 232111 01234677777641 11111
Q ss_pred HHhcCCCc-ccccCccccccCCCCCChHHHHHhhccc
Q 029133 158 LGSFGVTG-NLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 158 L~~~~l~~-~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
+..+++.. ...++++.+||| |||||++||++
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSg-----G~~qr~~la~a 90 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQY-----FEELAIPILER 90 (178)
T ss_dssp EEETTCCCSSEETTEEECHHH-----HHHHHHHHHHH
T ss_pred HHhhcCCccccccccccCcCH-----HHHHHHHHHhh
Confidence 01111111 235677888999 99999999984
No 86
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.30 E-value=5.4e-15 Score=127.22 Aligned_cols=57 Identities=25% Similarity=0.273 Sum_probs=44.6
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.++++.+.| +...+|+++ + ..+|++++|+|||||||||||++|+|++.|++|+|.+.
T Consensus 145 ~l~~Lg~~~-~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 145 DLHSLGMTA-HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CGGGSCCCH-HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CHHHcCCCH-HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 344444444 223466776 4 37899999999999999999999999999999999764
No 87
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.29 E-value=8.3e-14 Score=117.74 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=56.4
Q ss_pred EEEeeEEE---cCC-CCcce---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCc-----
Q 029133 57 SFSDASFG---YPG-GPILF---------KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----- 118 (198)
Q Consensus 57 ~~~~l~~~---y~~-~~~~l---------~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~----- 118 (198)
.+++++|. |++ +..+| ++++|+|++|+.++|+||||||||||+++|+|+++|++|.|.+++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 55666666 632 12344 9999999999999999999999999999999999999999987641
Q ss_pred ----eeEEEec-ccc
Q 029133 119 ----VRIAVFS-QHH 128 (198)
Q Consensus 119 ----~~i~~~~-q~~ 128 (198)
..++|++ |+.
T Consensus 217 ~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 217 PDHPNHVHLFYPSEA 231 (361)
T ss_dssp TTCSSEEEEECC---
T ss_pred cccCCEEEEeecCcc
Confidence 2478888 664
No 88
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.28 E-value=5.1e-13 Score=103.34 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=36.4
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCCeEEe
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFR 115 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~-----~p~~G~i~~ 115 (198)
+|+++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|++..
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 478999999994 356777 889999999999999999999999999998 788887753
No 89
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.24 E-value=1.5e-13 Score=104.58 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CCeEEecC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSA 117 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~---~G~i~~~~ 117 (198)
++++|+|+||||||||+++|+|++.|+ .|.|.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 589999999999999999999999998 89997653
No 90
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.24 E-value=5.1e-13 Score=110.19 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=61.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe---cCc--------e---eEEEeccccCCC-CCCC-CcHH-
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK--------V---RIAVFSQHHVDG-LDLS-SNPL- 139 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~---~~~--------~---~i~~~~q~~~~~-~~~~-~~~~- 139 (198)
|++..|++++|+|||||||||||++|+|+..|++|+|.+ .+. . .++|++|.+... +.+. .+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999987 321 1 368888876311 1100 0000
Q ss_pred ----------HHHH--H-hCCCCcHHHHHHHHHhcCCCcccccCccccccC
Q 029133 140 ----------LYMM--R-CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177 (198)
Q Consensus 140 ----------~~~~--~-~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG 177 (198)
.+.. . .+......++.++|+.++|..+..++++..||.
T Consensus 244 ~~~l~~~~~~~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGDKQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSSCCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1000 0 011233467889999999964566777788886
No 91
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=1e-13 Score=114.72 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=54.1
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCe
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGI-------------------DLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGT 112 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i-------------------~~Ge~~~lvG~NGsGKSTLlk~l~g~~~--p~~G~ 112 (198)
.+|++++|++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4688999999993 6889999988 8999999999999999999999999998 99999
Q ss_pred EEe
Q 029133 113 VFR 115 (198)
Q Consensus 113 i~~ 115 (198)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 976
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.21 E-value=1.1e-12 Score=115.94 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=81.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCCeEEecCc----------eeE
Q 029133 55 IISFSDASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKL--IAGELQPSSGTVFRSAK----------VRI 121 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~--l~g~~~p~~G~i~~~~~----------~~i 121 (198)
++..+++.+.. .+.++|++++| .|++|++++|+||||||||||+++ ++|+++|++|.|++++. ..+
T Consensus 12 ~~~~~~~~~~~-~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~ 90 (525)
T 1tf7_A 12 NSEHQAIAKMR-TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF 90 (525)
T ss_dssp --CCSSCCEEC-CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred Ccccccccccc-CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence 44445565444 45779999999 999999999999999999999999 78999999999988652 135
Q ss_pred EEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHHHHhhccc
Q 029133 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPR 193 (198)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~ 193 (198)
||++|++.....+.. ..... . ....++++.+++. ...++.+..||| ||+|||.|+..
T Consensus 91 g~~~q~~~~~~~l~~------~~~~~--~-~~~~~~l~~~~l~-~~~~~~~~~LS~-----g~~~~lilDe~ 147 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFI------LDASP--D-PEGQEVVGGFDLS-ALIERINYAIQK-----YRARRVSIDSV 147 (525)
T ss_dssp TCCHHHHHHTTSEEE------EECCC--C-SSCCSCCSSHHHH-HHHHHHHHHHHH-----HTCSEEEEECS
T ss_pred CCChHHhhccCcEEE------EecCc--c-cchhhhhcccCHH-HHHHHHHHHHHH-----cCCCEEEECCH
Confidence 666665421100000 00000 0 0111234445553 345667788898 99999988765
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.21 E-value=1e-12 Score=106.47 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=42.6
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCeEEecC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSA 117 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~~~~ 117 (198)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 4889999 9999999999999999999999999999998 99997654
No 94
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.20 E-value=8.3e-14 Score=116.73 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=52.9
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
|+++++++.|+ ...++++++|++.+|++++|+||||||||||+++|+|++.|++|+|.+.
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 55567777783 4568999999999999999999999999999999999999999999753
No 95
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.19 E-value=4.7e-12 Score=100.09 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=22.9
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GEL 106 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~-g~~ 106 (198)
....++||++++|++++|+||||||||||+++|+ |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3568999999999999999999999999999999 998
No 96
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.18 E-value=1.9e-14 Score=120.26 Aligned_cols=130 Identities=22% Similarity=0.299 Sum_probs=79.2
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhcCC----CCCCCeEEecC-------
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSA------- 117 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~G-------e~~~lvG~NGsGKSTLlk~l~g~~----~p~~G~i~~~~------- 117 (198)
++.++++..|+ ...+++++++.|..| +.++|+||||+|||||+++|++.+ .+++|.+....
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 44456666774 456889999999876 899999999999999999999998 67777665321
Q ss_pred ----ceeEEEeccccCCCCCCCCcH-HHHHHHhCC-------CCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHH
Q 029133 118 ----KVRIAVFSQHHVDGLDLSSNP-LLYMMRCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTN 185 (198)
Q Consensus 118 ----~~~i~~~~q~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~ 185 (198)
...|.|++|.... ..+... +...+.... +.....+...+..+++.. ....+..||+ |++
T Consensus 98 ~~~~~~~v~~iDE~~~l--~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~-----~l~ 168 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRL--NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSS-----PLR 168 (334)
T ss_dssp HHCCTTCEEEEETGGGC--CHHHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCH-----HHH
T ss_pred HHccCCCEEEEcchhhc--CHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCH-----HHH
Confidence 2357888876432 111111 111111111 112233445566666642 4556778888 999
Q ss_pred HHHhhccccc
Q 029133 186 SRPCFVPRRD 195 (198)
Q Consensus 186 ~rv~la~~~~ 195 (198)
+|++++..-|
T Consensus 169 sR~~l~~~Ld 178 (334)
T 1in4_A 169 SRFGIILELD 178 (334)
T ss_dssp TTCSEEEECC
T ss_pred HhcCceeeCC
Confidence 9998765433
No 97
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.15 E-value=1.3e-11 Score=96.09 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=26.3
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++++| .+|++|++++|+||||||||||+++|+|+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346777 6899999999999999999999999999985
No 98
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.15 E-value=1.5e-11 Score=104.04 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=29.5
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
.+.++++++.+| +++|+|||||||||||.+|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 467889999998 89999999999999999998
No 99
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=1.2e-12 Score=108.22 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=58.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe---cCc--------ee--EEEeccccCCC-CCC-CCcHHHH
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK--------VR--IAVFSQHHVDG-LDL-SSNPLLY 141 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~---~~~--------~~--i~~~~q~~~~~-~~~-~~~~~~~ 141 (198)
+++.+|++++|+||||||||||+++|+|+..|.+|+|.+ .+. .. ++|+.|.+... +.+ ..+. ..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999986 221 11 58999886322 111 1222 11
Q ss_pred H-------HHh----------CCCCcHHHHHHHHHhcCCCcccccCccccccCCCCCChHHH
Q 029133 142 M-------MRC----------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNS 186 (198)
Q Consensus 142 ~-------~~~----------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~ 186 (198)
+ ... +.......+.++++.+++... .......|+. |+++
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls-----~~~~ 302 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY-RYDHYVEFMT-----EIKD 302 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH-HHHHHHHHHH-----HHhh
Confidence 1 100 112334568899999999743 3344555666 6666
No 100
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.13 E-value=4.1e-11 Score=99.54 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=29.3
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++++|++.+| +++|+|||||||||||++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 4578888888 99999999999999999999654
No 101
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.11 E-value=9.7e-12 Score=108.54 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=42.4
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
-+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 468999999999999999999999999999999999999999874
No 102
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.11 E-value=9.4e-12 Score=98.22 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=37.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCeEEecCc-------eeEEEeccc
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK-------VRIAVFSQH 127 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p--~~G~i~~~~~-------~~i~~~~q~ 127 (198)
-.+++|++++|+||||||||||+++|+|+++| ..|.|.+... ..++|++|+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~ 70 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVN 70 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECC
Confidence 35789999999999999999999999999986 6777765432 135666665
No 103
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=7.4e-12 Score=107.68 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=46.8
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCCeEEe--cC---ceeEEEeccc
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSGTVFR--SA---KVRIAVFSQH 127 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~--~~---~~~i~~~~q~ 127 (198)
.+++++ ++.|+ ..+ |+++||+|++|++ ++|+|||||||||||++|+|+.- .|.... .. ...++|++|+
T Consensus 16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 455666 78885 455 9999999999999 99999999999999999999852 121111 01 1257888886
Q ss_pred c
Q 029133 128 H 128 (198)
Q Consensus 128 ~ 128 (198)
.
T Consensus 91 ~ 91 (427)
T 2qag_B 91 S 91 (427)
T ss_dssp -
T ss_pred C
Confidence 4
No 104
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.06 E-value=1.9e-12 Score=102.84 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=42.2
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.|.++|+...|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.++
T Consensus 9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~ 61 (227)
T 1qhl_A 9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (227)
T ss_dssp EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---
T ss_pred EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEEC
Confidence 577888766552 1 566666 8999999999999999999999999999988653
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.05 E-value=4e-11 Score=105.84 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=61.3
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 155 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
+..|.+|++++|+|+||||||||+++++|...|. |+- .+.|.+|+.. ........ . .+.+..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~------vi~~~~ee~~------~~l~~~~~-~-~g~~~~--- 336 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KER------AILFAYEESR------AQLLRNAY-S-WGMDFE--- 336 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCC------EEEEESSSCH------HHHHHHHH-T-TSCCHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCC------EEEEEEeCCH------HHHHHHHH-H-cCCCHH---
Confidence 4489999999999999999999999999998885 531 1344455421 11111111 1 122322
Q ss_pred HHHHhcCCCcccccCccccccCCCCCChHHHHHhhcccc
Q 029133 156 AHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCFVPRR 194 (198)
Q Consensus 156 ~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~la~~~ 194 (198)
+ +..+++. ...+.++..||| ||+||+++|++.
T Consensus 337 ~-~~~~g~~-~~~~~~p~~LS~-----g~~q~~~~a~~l 368 (525)
T 1tf7_A 337 E-MERQNLL-KIVCAYPESAGL-----EDHLQIIKSEIN 368 (525)
T ss_dssp H-HHHTTSE-EECCCCGGGSCH-----HHHHHHHHHHHH
T ss_pred H-HHhCCCE-EEEEeccccCCH-----HHHHHHHHHHHH
Confidence 2 2234553 344567788888 999999999764
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.05 E-value=2.7e-11 Score=93.55 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=37.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC---------ceeEEEecccc
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAVFSQHH 128 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~---------~~~i~~~~q~~ 128 (198)
|++++|+||||||||||+++|+|+++ ++| |.+++ ...++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999999998 889 76543 23478887764
No 107
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=8.9e-11 Score=100.93 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=40.5
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
.+|.+++|++.|+ ...++++++|+| +|+|+||||||||+++|+|...|..|
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 4689999999994 567999999998 99999999999999999999886544
No 108
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.04 E-value=1.2e-11 Score=99.48 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.0
Q ss_pred CeEEEEee-EEEcCCCCcceeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 54 PIISFSDA-SFGYPGGPILFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 54 ~~i~~~~l-~~~y~~~~~~l~~isl~i~~---Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++++++|+ ++.|++...+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 99994456799999999999 9999999999999999999998855
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.02 E-value=1.8e-10 Score=87.82 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=34.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
.+++|++++|+||||||||||+++|++. |..|.|.+++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~ 42 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHS 42 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcc
Confidence 4789999999999999999999999998 7889888765
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.02 E-value=4.4e-11 Score=94.69 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=40.7
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCCeEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA--GELQPSSGTVFRS 116 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~--g~~~p~~G~i~~~ 116 (198)
+.++.++..+++-..++.+ .|++|++++|+||||||||||+++|+ |+..+..|.+++.
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4455565555321122222 68999999999999999999999999 7656666666654
No 111
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.01 E-value=1.1e-10 Score=89.87 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=26.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999963
No 112
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.00 E-value=1.2e-11 Score=111.05 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=38.0
Q ss_pred eEEEEeeEEEcCCC-Ccceeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCeEEecCc----
Q 029133 55 IISFSDASFGYPGG-PILFKNL----------NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK---- 118 (198)
Q Consensus 55 ~i~~~~l~~~y~~~-~~~l~~i----------sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-~~G~i~~~~~---- 118 (198)
.+.++++++.|++. +++++.+ +|+++. ++|+|||||||||||++|+|++.| ++|.|.+.+.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 57889999999532 2355444 366654 999999999999999999999989 7999876542
Q ss_pred ----------eeEEEecccc
Q 029133 119 ----------VRIAVFSQHH 128 (198)
Q Consensus 119 ----------~~i~~~~q~~ 128 (198)
..++|++|+.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp EECSSSSCCEEEESCC---C
T ss_pred ecCCccccceeEEeeecccc
Confidence 2477888764
No 113
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.99 E-value=4.3e-10 Score=85.24 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=59.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE---------ec--------CceeEEEeccccCCCCCCC
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RS--------AKVRIAVFSQHHVDGLDLS 135 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~---------~~--------~~~~i~~~~q~~~~~~~~~ 135 (198)
++++|++.+| +++|+||||||||||+++|++++.+..|... .. ....|.++.|++...+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7889999998 9999999999999999999998888766421 11 2235777777643222211
Q ss_pred ---CcHHHHH--------HHhCCCCcHHHHHHHHHhcCCCcc
Q 029133 136 ---SNPLLYM--------MRCFPGVPEQKLRAHLGSFGVTGN 166 (198)
Q Consensus 136 ---~~~~~~~--------~~~~~~~~~~~~~~~L~~~~l~~~ 166 (198)
..+...+ ..........++.+++..+++..+
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~ 138 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPD 138 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCC
Confidence 0000000 000011236778899999999754
No 114
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.99 E-value=2.3e-10 Score=107.95 Aligned_cols=55 Identities=24% Similarity=0.422 Sum_probs=43.8
Q ss_pred CCeEEEEe-----eEEEcCCCCcceeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 53 PPIISFSD-----ASFGYPGGPILFKNLNFGIDL-------DSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 53 ~~~i~~~~-----l~~~y~~~~~~l~~isl~i~~-------Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.++|.+++ |++.|.++..+++|++|++.+ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 45799999 999984456799999999987 999999999999999999999 88764
No 115
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.98 E-value=6.2e-11 Score=104.37 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=44.6
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
.+++++++.|++|+.++|+|||||||||||++|+|+++|++|.|.+.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 467889999999999999999999999999999999999999998754
No 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.97 E-value=1.9e-10 Score=95.03 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
+|++++|+||||||||||+++|+|++.|++|+|.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6899999999999999999999999999999998653
No 117
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.96 E-value=6.2e-11 Score=96.92 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=41.5
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-eEE
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVF 114 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G-~i~ 114 (198)
.+|+++++.|++|++++|+||||||||||+++|+|...|.+| .|.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 478999999999999999999999999999999999999877 553
No 118
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.96 E-value=3e-10 Score=88.76 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=28.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.|++|++++|+||||||||||+++|+|++.|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5899999999999999999999999996655
No 119
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.96 E-value=1.2e-10 Score=106.85 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=54.3
Q ss_pred CeEEEEeeEEEcC--CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCeEEecCceeEEEeccc
Q 029133 54 PIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQH 127 (198)
Q Consensus 54 ~~i~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-p~~G~i~~~~~~~i~~~~q~ 127 (198)
..|.+++..+-.- ++..+++|++|+ |++++|+||||||||||||+|+|+.. +..|.+.......+++++|-
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i 622 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGI 622 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEE
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHh
Confidence 3577777743321 235789999999 99999999999999999999999874 78887654444567777763
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.95 E-value=4.3e-11 Score=100.98 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=40.8
Q ss_pred eeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCC----CeEEe
Q 029133 72 FKNLNFGIDL--DSRIAMVGPNGIGKSTILKLIAGELQPSS----GTVFR 115 (198)
Q Consensus 72 l~~isl~i~~--Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~----G~i~~ 115 (198)
...|+++|.+ |++++|+||||||||||+++|+|++.|++ |++++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 4678999999 99999999999999999999999999999 88764
No 121
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.95 E-value=1.9e-10 Score=89.05 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
No 122
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=5.7e-10 Score=95.86 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=33.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
-++++|+++.|+.++|+|+|||||||||++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 37999999999999999999999999999999983
No 123
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.90 E-value=4.1e-10 Score=86.06 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 124
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.89 E-value=3e-10 Score=88.31 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=29.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.++|++++|+||||||||||+++|+|++.|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999875
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.88 E-value=4.2e-10 Score=93.84 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=35.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.++|++++|+||||||||||+++|+|++.|++|+|.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 47899999999999999999999999999999999864
No 126
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.85 E-value=1.3e-09 Score=83.80 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=29.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.84 E-value=2.9e-10 Score=96.33 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=44.2
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCeEEecCc-------eeEEEeccc
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAK-------VRIAVFSQH 127 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~~~~~-------~~i~~~~q~ 127 (198)
+|.+++ +++|++++|+||||||||||+++|+|++.|+ +|+|...+. ..++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee
Confidence 455554 7899999999999999999999999999998 899954321 236678773
No 128
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.80 E-value=4e-09 Score=85.54 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=61.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC----ceeEEEeccccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 153 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~----~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.|++|++++|+||||||||||++.|++... .|.+.... ...+.|+..+.. . ......+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhcChhh
Confidence 378999999999999999999999998654 34432211 123556554311 1 011111111111234455
Q ss_pred HHHHHHhcCCCcccccCccccccCCCCCChHHHHHh
Q 029133 154 LRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPC 189 (198)
Q Consensus 154 ~~~~L~~~~l~~~~~~~~~~~LSG~~ls~Ge~~rv~ 189 (198)
..++++.+.+.. ..++++..||+ |+.+++.
T Consensus 99 ~~~~~~~l~l~~-~~~~~~~~ls~-----g~~~~i~ 128 (279)
T 1nlf_A 99 RQAVADGLLIQP-LIGSLPNIMAP-----EWFDGLK 128 (279)
T ss_dssp HHHHHHHEEECC-CTTSCCCTTSH-----HHHHHHH
T ss_pred hhhccCceEEee-cCCCCcccCCH-----HHHHHHH
Confidence 667788888763 44667888888 9998874
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.80 E-value=2.5e-10 Score=88.21 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=39.8
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
+|++..+ +.....+..++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 3555555 34456677888889999999999999999999999999987 67876
No 130
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.78 E-value=8.2e-10 Score=93.08 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=37.6
Q ss_pred cceeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCeEE
Q 029133 70 ILFKNLNF-------GIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVF 114 (198)
Q Consensus 70 ~~l~~isl-------~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~-~G~i~ 114 (198)
+.|+++.+ .+.+|++++|+|||||||||||++|+|++.|+ .|.|.
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 34555555 67889999999999999999999999999997 56664
No 131
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.77 E-value=3.5e-09 Score=98.99 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=46.9
Q ss_pred CeEEEEeeEEEcC----CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hcCCCCCCC
Q 029133 54 PIISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--------AGELQPSSG 111 (198)
Q Consensus 54 ~~i~~~~l~~~y~----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l--------~g~~~p~~G 111 (198)
..|.+++..+-+- +...+++|++|++.+|++++|+||||||||||||+| .|.+.|..+
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 4577777665442 234789999999999999999999999999999999 777777654
No 132
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.76 E-value=2.6e-09 Score=99.58 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=42.3
Q ss_pred CeEEEEeeEEEc-----C-CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 54 PIISFSDASFGY-----P-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 54 ~~i~~~~l~~~y-----~-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
..|.+++..+-. + ++..+++|++|++.+|++++|+||||||||||||+|+++
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 367777765432 1 246789999999999999999999999999999999753
No 133
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.75 E-value=1.1e-09 Score=85.49 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=40.7
Q ss_pred CcceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 69 PILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 69 ~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+.|+++.. .|++|++++|+||||||||||++.|++...+..|.+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 346777777 79999999999999999999999999988887777754
No 134
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.74 E-value=5.1e-09 Score=96.57 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=49.3
Q ss_pred CeEEEEeeEEEcC----CCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCeEEecCceeEEEecc
Q 029133 54 PIISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQ 126 (198)
Q Consensus 54 ~~i~~~~l~~~y~----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~-p~~G~i~~~~~~~i~~~~q 126 (198)
+.|.+++..+-.- ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|.........+++++|
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~ 652 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR 652 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH
Confidence 3566666543220 245689999999 9999999999999999999999999743 2334321122234566555
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=3.7e-09 Score=80.32 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=28.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCeE
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTV 113 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p-~~G~i 113 (198)
.+|++++|+||||||||||+++|++++++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998764 44544
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.71 E-value=2.7e-09 Score=84.89 Aligned_cols=36 Identities=39% Similarity=0.529 Sum_probs=33.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCeEEec
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVFRS 116 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~---g~~~p~~G~i~~~ 116 (198)
++++++|+||||||||||+++|+ |+..|+.|+|.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 47999999999999999999999 9999999988654
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.69 E-value=6.5e-09 Score=79.18 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=28.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
|++++|+||||||||||+++|++ |.+|.+++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~ 34 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEG 34 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcc
Confidence 67899999999999999999987 6778887654
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=7.8e-09 Score=79.66 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=24.7
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
...++|+||++.+|.+++|+|++||||||+.+.|+..+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999765
No 139
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.68 E-value=7.7e-09 Score=79.73 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecC
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~ 117 (198)
.++.++|++++|+||||||||||+++|++.+ |.+.++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3566789999999999999999999999987 7776654
No 140
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.66 E-value=2.5e-08 Score=84.06 Aligned_cols=44 Identities=18% Similarity=0.087 Sum_probs=37.1
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
.++.|...- ...+++++|++.+| +++|+|||||||||||++|++
T Consensus 5 ~i~~L~l~~---~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTLN---YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CEEEEEEES---BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeEEEEeC---ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 566666642 23578999999999 999999999999999999997
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.66 E-value=3.9e-09 Score=85.75 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=38.3
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
..+|+++++.+++| ++|+||||||||||+++|+|...+ +.|.++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~ 76 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVK 76 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEE
Confidence 45789999999999 999999999999999999999876 556554
No 142
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.64 E-value=4e-09 Score=84.56 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=33.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCeEE
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVF 114 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~---g~~~p~~G~i~ 114 (198)
.+|++++|+|||||||||++++|+ |+..|++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.62 E-value=2.7e-09 Score=80.78 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=33.0
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCe
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~ 112 (198)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4567889999999999999999999999999877773
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.61 E-value=4.7e-09 Score=86.05 Aligned_cols=100 Identities=19% Similarity=0.089 Sum_probs=58.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEecCceeEEEeccccCCCCCCCCcHHHHHHHh-----------CC-
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC-----------FP- 147 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~-----------~~- 147 (198)
.++.+++|+|++|||||||.++|++++.+... ....+.+++|+.. .+ ..+...++... .+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~-----~~~~~~iv~~D~f-~~--~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG-----GEKSIGYASIDDF-YL--THEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG-----GGSCEEEEEGGGG-BC--CHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC-----CCceEEEeccccc-cC--ChHHHHHHhccccccchhhhccCcc
Confidence 45789999999999999999999999876410 0112445577753 22 22333332211 11
Q ss_pred CCcHHHHHHHHHhcCCC------cc-cccCccccccCCCCCChHHHHHhhcc
Q 029133 148 GVPEQKLRAHLGSFGVT------GN-LALQPMYTLSGFGCSGGTNSRPCFVP 192 (198)
Q Consensus 148 ~~~~~~~~~~L~~~~l~------~~-~~~~~~~~LSG~~ls~Ge~~rv~la~ 192 (198)
..+...+.+.+..+.-. .. .....-..+|| ||+||+.+|.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sg-----Gq~~R~~~a~ 147 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFK-----GEGDRCPTGQ 147 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHH-----HTCEECSSCE
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCC-----cccccccccc
Confidence 22355666777776442 10 01112245667 9999998873
No 145
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.61 E-value=1.6e-08 Score=86.92 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=37.7
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
.|.++|+ +.|+ .. . .+++.+|++++|+|||||||||||++|+++..|.+
T Consensus 6 ~l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 3667777 5673 21 1 35577899999999999999999999999988865
No 146
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.57 E-value=5e-08 Score=76.64 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=32.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc--CCCC-----CCCeEEec
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAG--ELQP-----SSGTVFRS 116 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g--~~~p-----~~G~i~~~ 116 (198)
-|++|++++|+||||||||||++.|++ +.+| ..|.++++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 388999999999999999999999999 5655 45555543
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=3.4e-08 Score=76.68 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=27.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 148
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.56 E-value=1.6e-09 Score=90.12 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=40.8
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhcCCC--CCCCeE
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDS------RIAMVGPNGIGKSTILKLIAGELQ--PSSGTV 113 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge------~~~lvG~NGsGKSTLlk~l~g~~~--p~~G~i 113 (198)
.+++.| +....+.+++..+..+. +++|+||||||||||+++|++++. |+.|.+
T Consensus 65 ll~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 65 LLSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 344455 33456777777777776 899999999999999999999987 455654
No 149
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.56 E-value=1.3e-08 Score=84.27 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=31.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC--------CCCCCeEEecC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL--------QPSSGTVFRSA 117 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~--------~p~~G~i~~~~ 117 (198)
++++|+|+|||||||||++|.|+. .|+.|+|.+++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg 47 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD 47 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccH
Confidence 579999999999999999999997 78999987654
No 150
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.55 E-value=3.1e-08 Score=76.77 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
No 151
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.54 E-value=1.6e-08 Score=78.09 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=33.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
..+|.+++|+|+||||||||+++|++++.+..|.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5678999999999999999999999999888887754
No 152
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.54 E-value=2.8e-08 Score=78.36 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=31.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
+.+.++|++++|+|+||||||||+++|+++ .|+|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 335678999999999999999999999998 6767643
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=2.6e-08 Score=73.71 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
+|+.++|+||||+|||||+++|++.+.+ +|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 8999999999999999999999999877 46
No 154
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.51 E-value=1.5e-08 Score=84.09 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=40.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6889999999999999999999999999999999999898875
No 155
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.50 E-value=4.8e-08 Score=81.97 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=39.1
Q ss_pred ceeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCC----Ce-EEecC
Q 029133 71 LFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSS----GT-VFRSA 117 (198)
Q Consensus 71 ~l~~i-sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~--~p~~----G~-i~~~~ 117 (198)
.|+.+ ++.|++|++++|+||||||||||+++|++.. +|++ |. |+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 45554 6789999999999999999999999999998 6666 57 66554
No 156
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=7e-08 Score=82.23 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=35.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCCeEEecC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSA 117 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g------------~~~p~~G~i~~~~ 117 (198)
.+..|.+++|+|+|||||||||++|+| ...|+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 357899999999999999999999999 6678999988764
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.48 E-value=2.5e-08 Score=79.45 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=45.7
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
..++++.+.|. ...+++++++++++| ++|+||||+|||||+++|++... .|.+.++
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 44567777773 456889999999999 99999999999999999999875 6666554
No 158
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.47 E-value=9.9e-09 Score=84.27 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=46.4
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
+.++++++.|+. .. ++++|+ +|++++|+|+||+||||++..|++++.+..|+|.+
T Consensus 77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l 131 (295)
T 1ls1_A 77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (295)
T ss_dssp HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 456678888843 22 778888 89999999999999999999999999998888865
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.47 E-value=2.7e-08 Score=80.46 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=45.1
Q ss_pred EEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.|.++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 4556666673 456889999999999 99999999999999999999875 6766654
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.47 E-value=2.6e-08 Score=82.26 Aligned_cols=42 Identities=29% Similarity=0.270 Sum_probs=37.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 74 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
++++...+|++++|+|+|||||||++..|++.+.+..|+|.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l 137 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 137 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE
Confidence 456667889999999999999999999999999998888864
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.46 E-value=9.1e-08 Score=72.93 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=28.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CCCeEEecC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP-----------SSGTVFRSA 117 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p-----------~~G~i~~~~ 117 (198)
+++|+|+||||||||++.++|...+ ++|+|.+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC
Confidence 6899999999999999999998765 456776654
No 162
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.46 E-value=2.4e-08 Score=84.65 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=38.7
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+|+++++.+++|++++|+||||||||||+++|++. ..|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 578999999999999999999999999999999985 4677755
No 163
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.43 E-value=2.6e-08 Score=84.47 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=47.2
Q ss_pred eEEEEeeEEEcCCCCccee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 55 IISFSDASFGYPGGPILFK--------------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~--------------~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+.++||++.|+..+..++ |+.+.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4678899999987777888 899999999999999999999999999998865
No 164
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.42 E-value=4.7e-08 Score=86.71 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=35.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-eEE-ecC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVF-RSA 117 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G-~i~-~~~ 117 (198)
.+++|++++|+|+||||||||+++|++.+.|++| ++. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 4779999999999999999999999999999987 674 544
No 165
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.41 E-value=8.4e-08 Score=71.96 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
.+|++++|+|+|||||||++++|++.+ |.+.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468899999999999999999999875 556554
No 166
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.38 E-value=1.4e-07 Score=70.39 Aligned_cols=28 Identities=43% Similarity=0.559 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999998754
No 167
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.36 E-value=2.3e-07 Score=68.50 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=24.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
.+..+++.+ .+++|+|||||||||+|.+|+
T Consensus 15 ~~~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 344555555 499999999999999999986
No 168
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.35 E-value=2.1e-07 Score=71.74 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
-++.+|.+++|+|++|||||||+++|++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578899999999999999999999999864
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.31 E-value=1.4e-07 Score=84.52 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=46.6
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-CeEEe
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFR 115 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~-G~i~~ 115 (198)
+++..| +...+++++++.+..|+.++|+||||+|||||+++|++++.+.. |.+.+
T Consensus 39 ~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 39 LIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp HHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred ccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 344455 45568899999999999999999999999999999999999887 55554
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.29 E-value=2.8e-07 Score=70.39 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|+||||||||++.|+|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999853
No 171
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.29 E-value=1.9e-07 Score=76.65 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=30.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
.+|++++|+|+|||||||++..|++.+.+++|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999998878
No 172
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.29 E-value=5.3e-08 Score=81.40 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=43.6
Q ss_pred eeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 60 ~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
++.+.| +...+++++++.+.++.+++|+|+||+|||||++.|++.+.+..+++.
T Consensus 35 ~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 35 HPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp CHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred Cchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 333344 234578888999999999999999999999999999998877776654
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.27 E-value=3.8e-07 Score=70.46 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=29.2
Q ss_pred ceeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 71 LFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 71 ~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
.|+.+.. .|++|++++|+||||||||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455443 589999999999999999999999999
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.25 E-value=7.5e-07 Score=76.05 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=28.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKL--IAGELQPSSG 111 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~--l~g~~~p~~G 111 (198)
-|++|++++|+||||||||||++. +.++.+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 489999999999999999999994 4577766544
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.25 E-value=1e-07 Score=74.31 Aligned_cols=34 Identities=38% Similarity=0.649 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC---CCCCCeEEe
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR 115 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~---~p~~G~i~~ 115 (198)
+.+++|+|++||||||+.++|++.+ .+++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876 677777754
No 176
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.22 E-value=5.6e-07 Score=71.06 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=31.1
Q ss_pred eeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEE
Q 029133 72 FKNLNFGID---LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (198)
Q Consensus 72 l~~isl~i~---~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~ 114 (198)
|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 566677666 8999999999999999999999999887 66554
No 177
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.19 E-value=4.2e-07 Score=76.19 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=30.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
++.+++|+|++|||||||++.|+|.+.+..|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 46789999999999999999999988887776653
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.13 E-value=7.4e-07 Score=67.10 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=26.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
.+|.+++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 45
No 179
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.12 E-value=1.5e-06 Score=67.31 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
.+.++++.+ .+++|+|||||||||+|.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 599999999999999999874
No 180
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.10 E-value=9.1e-07 Score=67.68 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=31.0
Q ss_pred EEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 63 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 63 ~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+.|++-..+++++++..+.. +++|+|++|+|||||++.+++
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 45655456888999887776 689999999999999999987
No 181
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.10 E-value=1.9e-06 Score=71.70 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=24.4
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
+.+..+++.+ .+++|+|||||||||||.+|+
T Consensus 14 ~~~~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 14 HSDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ccCeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3455566655 489999999999999999763
No 182
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=3.8e-07 Score=80.76 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=44.2
Q ss_pred EeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 59 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
+++...| ....++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.+.
T Consensus 87 ~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 87 EKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp HHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 4444445 2334667888888 899999999999999999999999998887777543
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.07 E-value=1.4e-06 Score=73.11 Aligned_cols=42 Identities=36% Similarity=0.411 Sum_probs=32.4
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCCeEE
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVF 114 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g--~~~p~~G~i~ 114 (198)
.+|++++++++ .++|+|++||||||||+.|+| ++++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47888898888 999999999999999999999 5566667553
No 184
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.05 E-value=6.7e-07 Score=78.65 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.9
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.+++++|++.+| +++|+|+|||||||||.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 568899999998 9999999999999999999655
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.03 E-value=2.7e-06 Score=65.33 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.03 E-value=2.6e-06 Score=66.79 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=31.7
Q ss_pred ceeee-eEEEeCCCEEEEECCCCCcHHHHHH-HHhcCCCCCCCeEEe
Q 029133 71 LFKNL-NFGIDLDSRIAMVGPNGIGKSTILK-LIAGELQPSSGTVFR 115 (198)
Q Consensus 71 ~l~~i-sl~i~~Ge~~~lvG~NGsGKSTLlk-~l~g~~~p~~G~i~~ 115 (198)
.|+.+ .--+++|++++|+||||||||||+. ++.+..+...+.+++
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34544 4568999999999999999999954 545554444444443
No 187
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.02 E-value=1.5e-06 Score=74.74 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=43.8
Q ss_pred EEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+++++.|++. . ++++|+ ++++++|+|+|||||||++..|++.+.+..++|.+
T Consensus 79 ~~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 35677778432 2 677887 89999999999999999999999999998888764
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=2e-06 Score=71.24 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc-CCCCCCCeEEec
Q 029133 84 RIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRS 116 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g-~~~p~~G~i~~~ 116 (198)
.+.|+||||+|||||+++|++ ++.|+.|.+.++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 489999999999999999999 889999988654
No 189
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.98 E-value=1.1e-06 Score=68.06 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=33.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC--eEEec
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG--TVFRS 116 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G--~i~~~ 116 (198)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 34678999999999999999999999999887777 55544
No 190
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.97 E-value=5.6e-07 Score=75.76 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=36.4
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
..+.+.+++..| +.+.++++++|+| +|+|++|+|||||++.|.+...+..+
T Consensus 16 ~~v~~~~l~~~~-~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 16 GYVGFANLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp -----CCHHHHH-HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred ceEEeccchHHh-CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 357788888888 4566788999877 99999999999999999887655443
No 191
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.97 E-value=4.2e-06 Score=62.46 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+|.+++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999865
No 192
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.96 E-value=3.9e-06 Score=63.59 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 74 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
++|++..++.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 193
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.95 E-value=3.5e-06 Score=64.51 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 194
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.94 E-value=6.1e-06 Score=62.51 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+++++++..+.. +++|+|++|+|||||++.+++
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678888888776 889999999999999999987
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.93 E-value=2.9e-06 Score=64.16 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=30.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
..+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45788999999999999999999999887766655
No 196
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.92 E-value=1.3e-05 Score=67.45 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=32.5
Q ss_pred EEEEeeEEE-cCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 029133 56 ISFSDASFG-YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (198)
Q Consensus 56 i~~~~l~~~-y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~ 103 (198)
+.+..|... |. .+.+..+++.+ .+++|+|+|||||||+|.+|+
T Consensus 3 M~l~~L~l~nFr----~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK----SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET----TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc----cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 456666653 31 34777777766 599999999999999999886
No 197
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.91 E-value=2.6e-06 Score=74.65 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=43.7
Q ss_pred EEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEec
Q 029133 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (198)
Q Consensus 56 i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~~ 116 (198)
..++++...| ....++.++++.+++| +.|+||||+|||||+++|++... .+.+.++
T Consensus 41 ~~l~~lv~~l-~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 41 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHH-HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHh-hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 3455665556 3456789999999998 99999999999999999999874 4555543
No 198
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.91 E-value=6.2e-06 Score=62.00 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
No 199
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.90 E-value=1.2e-06 Score=71.97 Aligned_cols=54 Identities=20% Similarity=0.100 Sum_probs=43.1
Q ss_pred EEeeEEEcCCCCcceee-eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 58 FSDASFGYPGGPILFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 58 ~~~l~~~y~~~~~~l~~-isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+++...|++.. .+ ++|+++ +.+++++|+||+||||++..|++.+.+..+++.+
T Consensus 77 ~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 456666774322 56 788776 9999999999999999999999999887777753
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.90 E-value=6.3e-06 Score=70.19 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=30.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCeEEec
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRS 116 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~-----------~~p~~G~i~~~ 116 (198)
+..+.+++|||+||+||||||+.|+|. ..|..|.+.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~ 67 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVP 67 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEEC
Confidence 567889999999999999999999998 56777777654
No 201
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.90 E-value=9e-06 Score=60.02 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 202
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.89 E-value=9.8e-06 Score=69.73 Aligned_cols=34 Identities=32% Similarity=0.594 Sum_probs=28.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCCCeEEecC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ------------PSSGTVFRSA 117 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~------------p~~G~i~~~~ 117 (198)
+++|+|+||+|||||++.|+|... |..|.+.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 799999999999999999999864 5567776654
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.89 E-value=5.9e-06 Score=63.52 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.+.+|.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999987663
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.86 E-value=4.5e-06 Score=70.16 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=31.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
|++|+++.|+||+|||||||+..++....+..|.+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 78999999999999999999999999887777755
No 205
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.83 E-value=1.2e-05 Score=67.81 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhcCCC-----------CCCCeEEecC
Q 029133 81 LDSR-IAMVGPNGIGKSTILKLIAGELQ-----------PSSGTVFRSA 117 (198)
Q Consensus 81 ~Ge~-~~lvG~NGsGKSTLlk~l~g~~~-----------p~~G~i~~~~ 117 (198)
.|-. ++|+|++|||||||++.|+|... |+.|.+.+++
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN 225 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC
Confidence 3455 99999999999999999999876 4567777655
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.82 E-value=5.7e-06 Score=67.79 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++.+++|+|++|+|||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999974
No 207
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.74 E-value=1.7e-05 Score=59.37 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|++|+|||||++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 208
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.73 E-value=3.4e-06 Score=70.76 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=32.6
Q ss_pred cceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCC
Q 029133 70 ILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 366788888999999 9999999999999999998854
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=1.6e-06 Score=72.00 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCcceeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 68 GPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 68 ~~~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
...+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34577888888999988 999999999999999999998755443
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.72 E-value=2.4e-05 Score=61.45 Aligned_cols=29 Identities=45% Similarity=0.542 Sum_probs=24.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCe
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPSSGT 112 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~~G~ 112 (198)
+++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57999999999999999999988776653
No 211
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.70 E-value=1.5e-05 Score=60.98 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
..+++|+|++||||||+.+.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 212
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.67 E-value=1.9e-05 Score=59.28 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 213
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.66 E-value=2.6e-05 Score=61.29 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+-.+|.+++|+|++||||||+.++|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999986
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.65 E-value=1.3e-05 Score=60.59 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.+++|+|++|||||||++.|.+.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999999999876543
No 215
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.65 E-value=2.6e-05 Score=68.52 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=35.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCCeEE
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVF 114 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g--~~~p~~G~i~ 114 (198)
+.+.+++..+.++.|.|++||||||+|++|.. ++.++.+++.
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~ 201 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVR 201 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEE
Confidence 35788999999999999999999999999876 5566666664
No 216
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.63 E-value=3.2e-05 Score=71.60 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=33.7
Q ss_pred CeEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHH
Q 029133 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99 (198)
Q Consensus 54 ~~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl 99 (198)
..|.+++.. .--|+|||++|+.|.+++|+|.||||||||.
T Consensus 14 ~~I~i~gar------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 14 GFVQVRGAR------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TEEEEEEEC------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CeEEEeecc------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 357777653 1248999999999999999999999999987
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.62 E-value=1.9e-05 Score=62.67 Aligned_cols=35 Identities=43% Similarity=0.628 Sum_probs=24.7
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.+.++++.++.| +.|+||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 344555555554 88999999999999999998764
No 218
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.61 E-value=1.4e-05 Score=72.45 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=29.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCeE
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTV 113 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p--~~G~i 113 (198)
++++.++.+++|+|+||+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456788999999999999999999999976554 45554
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.54 E-value=3e-05 Score=64.92 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=28.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
-+++|+++.|.||||+|||||+..++.......|.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v 92 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA 92 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 478999999999999999999877776544444443
No 220
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.54 E-value=4.6e-05 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.54 E-value=1.4e-05 Score=63.31 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHh---cCCCCCCCeE
Q 029133 82 DSRIAMVGPNGIGKSTILKLIA---GELQPSSGTV 113 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~---g~~~p~~G~i 113 (198)
.-+++|+||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 4444444444
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.53 E-value=2.7e-05 Score=71.93 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=29.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
|.+.+++.+.|+||||||||||+++|++.+.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 368899999999999999999999999987543
No 223
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.50 E-value=3.5e-05 Score=65.13 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
.+..++|+|++|||||||++.|+....+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 57789999999999999999999988777777764
No 224
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.49 E-value=7.3e-05 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987653
No 225
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.49 E-value=0.00011 Score=61.77 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------CCCCCCCeEEecC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAG-----------ELQPSSGTVFRSA 117 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g-----------~~~p~~G~i~~~~ 117 (198)
|-.++|||.+|+|||||++.|++ ...|..|.+.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3456777776543
No 226
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.47 E-value=6.5e-05 Score=70.46 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=32.5
Q ss_pred eEEEEeeEEEcCCCCcceeeeeEEEeCCCEEEEECCCCCcHHHHH
Q 029133 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99 (198)
Q Consensus 55 ~i~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl 99 (198)
.|.+++.. .--|+|||++|+.+.+++|+|.+|||||||.
T Consensus 25 ~I~i~gar------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 25 RLIVKGAR------EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEEEEC------SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cEEEeccc------ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 46666542 2248999999999999999999999999985
No 227
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.47 E-value=6.6e-05 Score=70.23 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=27.6
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHH
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLl 99 (198)
-|+|||++|+.+.+++|+|.+|||||||.
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 48999999999999999999999999985
No 228
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.46 E-value=6.4e-05 Score=57.45 Aligned_cols=21 Identities=52% Similarity=0.852 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 029133 85 IAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 85 ~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999988654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.45 E-value=3.1e-05 Score=66.70 Aligned_cols=35 Identities=29% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeEEe
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i~~ 115 (198)
++.+++++|+|||||||++..|+..+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998887777753
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.45 E-value=8.3e-05 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
|-+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997643
No 231
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.44 E-value=6.4e-05 Score=60.30 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.42 E-value=2.1e-05 Score=62.57 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
....+.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456678899999999999999999998764
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.42 E-value=8.3e-05 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+-+++|+|++||||||+.++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 234
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.41 E-value=8.5e-05 Score=54.56 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 029133 84 RIAMVGPNGIGKSTILKLI 102 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l 102 (198)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.41 E-value=8.6e-05 Score=56.24 Aligned_cols=23 Identities=48% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998844
No 236
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.39 E-value=7.4e-05 Score=56.22 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997643
No 237
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.38 E-value=8.4e-05 Score=55.41 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 238
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.38 E-value=5.3e-05 Score=70.75 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=28.1
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHH
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl 99 (198)
--|+|||++|+++.+++|+|.||||||||.
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 358999999999999999999999999986
No 239
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.37 E-value=8.9e-05 Score=59.10 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+||+|||||||.+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.33 E-value=4.9e-05 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887654
No 241
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.33 E-value=0.00014 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 029133 83 SRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g 104 (198)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.30 E-value=0.00014 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
..+..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4567899999999999999999983
No 244
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00013 Score=54.64 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
=.++|+|+.|+|||||++.|++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998753
No 245
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.29 E-value=0.0002 Score=57.83 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.29 E-value=0.00016 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+..+.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997643
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00013 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.+++|+|+.||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999985
No 248
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00033 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 249
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.27 E-value=0.00013 Score=54.53 Aligned_cols=28 Identities=43% Similarity=0.732 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC----CCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL----QPSSG 111 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~----~p~~G 111 (198)
+++|+|++|+|||||++.+++.. .|+.|
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 68999999999999999999863 34555
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00029 Score=52.81 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc-C----CCCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAG-E----LQPSSG 111 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g-~----~~p~~G 111 (198)
+++|+|+.|+|||||++.+++ . +.|+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 589999999999999965544 3 456655
No 251
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.25 E-value=3.1e-05 Score=66.92 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=35.9
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
..|+++..-+++|+.+.|.|++|+|||||+..|++...+..|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g 232 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN 232 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 467777777999999999999999999999999887765444
No 252
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.25 E-value=0.00014 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|+.|+|||||++.+++...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999988654
No 253
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.25 E-value=0.00026 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998765
No 254
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.24 E-value=0.00019 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.792 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++|+|+.|+|||||++.+++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCccHHHHHHHHhcCCC
Confidence 589999999999999999988653
No 255
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.23 E-value=0.00025 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 256
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.22 E-value=0.0002 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|+.|+|||||++.+++...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 589999999999999999987543
No 257
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.22 E-value=5.8e-05 Score=65.74 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=30.5
Q ss_pred CcceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 69 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
...+.++++.++.| +.|+||+|+|||||+++|++..
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 34667777778777 8899999999999999999865
No 258
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.22 E-value=0.00019 Score=54.80 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
..+|-+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999854
No 259
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.21 E-value=0.00019 Score=54.03 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
-+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999998887653
No 260
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.0001 Score=60.11 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=27.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 77 l~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+.+.++..+.|.||+|+|||||+++|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467888999999999999999999998764
No 261
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.0002 Score=54.53 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+|-+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4668999999999999999999876543
No 262
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.21 E-value=0.00019 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 263
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.0002 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00016 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+..+.|+||+||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997654
No 265
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.19 E-value=0.00022 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.+|-+++|+|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999754
No 266
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.00022 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999997543
No 267
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.18 E-value=0.00014 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+..|+.++|+||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 45689999999999999998876643
No 268
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.18 E-value=0.00013 Score=59.15 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=27.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
..+.|+||+|+|||||.++|+..+.+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887776654
No 269
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.18 E-value=0.00024 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+.-+++|+|+.|+|||||++.+++-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44579999999999999999998743
No 270
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.17 E-value=0.00019 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 271
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.17 E-value=0.00023 Score=53.15 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+++|+|+.|+|||||++.+.+...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5799999999999999999987643
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.17 E-value=0.00021 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 273
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.17 E-value=0.00022 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988754
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00023 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 275
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.16 E-value=0.00021 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998753
No 276
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.16 E-value=0.00023 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
No 277
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.16 E-value=0.00032 Score=51.07 Aligned_cols=23 Identities=13% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 278
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.0002 Score=59.81 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
..-+++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999875
No 279
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.16 E-value=0.00032 Score=51.62 Aligned_cols=23 Identities=17% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999887754
No 280
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.15 E-value=0.00033 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 281
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.15 E-value=0.00032 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987654
No 282
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.15 E-value=0.00024 Score=56.24 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|++|+|||||++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 283
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.14 E-value=0.00021 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 284
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.14 E-value=0.00026 Score=53.34 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 285
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.14 E-value=0.00022 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=.++|+|+.|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 286
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.13 E-value=0.00022 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 287
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.00015 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
.=+++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 288
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.13 E-value=0.00025 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 289
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.12 E-value=0.00032 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998864
No 290
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.11 E-value=0.00019 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999997543
No 291
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.11 E-value=0.00025 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 292
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.10 E-value=0.00027 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 293
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.10 E-value=0.00029 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 294
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.09 E-value=0.00033 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 295
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.08 E-value=0.00042 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 296
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.08 E-value=0.0003 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
=+++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
No 297
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.08 E-value=0.0003 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 298
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.07 E-value=0.00024 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 299
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.07 E-value=0.00031 Score=50.92 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 029133 84 RIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g 104 (198)
+++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 300
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.06 E-value=0.00043 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998863
No 301
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.05 E-value=0.00041 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999997654
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00034 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996543
No 303
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.04 E-value=0.00026 Score=58.85 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCC--EEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 81 LDS--RIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 81 ~Ge--~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.+. .+.|+||+|+|||||++.+++...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 346 89999999999999999999988765
No 304
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.04 E-value=0.00034 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 305
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.04 E-value=0.00036 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
No 306
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.03 E-value=0.00034 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 307
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.03 E-value=0.00033 Score=55.92 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 308
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00036 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
No 309
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.03 E-value=0.00044 Score=50.71 Aligned_cols=22 Identities=14% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 310
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.02 E-value=0.00045 Score=57.45 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888774
No 311
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.02 E-value=0.00051 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998643
No 312
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.02 E-value=0.00034 Score=53.15 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=25.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
..+.|.||+|+|||||+++|+.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 6789999999999999999998765443333
No 313
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.01 E-value=0.00037 Score=52.70 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 314
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.01 E-value=0.00049 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.01 E-value=0.0004 Score=52.36 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+..+-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999999997654
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00044 Score=50.82 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997643
No 317
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.00 E-value=0.00052 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 318
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.00 E-value=0.00037 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997643
No 319
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.00 E-value=0.00075 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 029133 84 RIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g 104 (198)
+++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999884
No 320
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.99 E-value=0.00056 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 321
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.99 E-value=0.00048 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 322
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.99 E-value=0.00041 Score=56.75 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999864
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.99 E-value=0.00043 Score=51.84 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997644
No 324
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.98 E-value=0.00066 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999887764
No 325
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.98 E-value=0.00043 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996543
No 326
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.98 E-value=0.0005 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 327
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.98 E-value=0.00044 Score=51.43 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+.=+++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998744
No 328
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.98 E-value=0.00045 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+++|+|+.|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6899999999999999999986543
No 329
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.97 E-value=0.00052 Score=52.91 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987654
No 330
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.97 E-value=0.00055 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++|+|+.|+|||||++.|++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999988653
No 331
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.96 E-value=0.00037 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987754
No 332
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.96 E-value=0.00043 Score=52.27 Aligned_cols=23 Identities=17% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 333
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.96 E-value=0.00043 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 334
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.00035 Score=57.73 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=25.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
..+..+.|+||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457789999999999999999999877553
No 335
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.95 E-value=0.00045 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999997643
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.95 E-value=0.00058 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999997643
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.00044 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 338
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.95 E-value=0.00041 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999997643
No 339
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.94 E-value=0.00049 Score=54.93 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 340
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.94 E-value=0.00047 Score=51.87 Aligned_cols=23 Identities=17% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|++..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.00049 Score=54.87 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
++-++.|+|+.||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.94 E-value=0.00042 Score=53.58 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997543
No 343
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.93 E-value=0.0005 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 344
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.93 E-value=0.00052 Score=55.05 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p~~G 111 (198)
-.++|+|.+|+|||||++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 38999999999999999999997764444
No 345
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.93 E-value=0.00048 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988753
No 346
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.93 E-value=0.00043 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 347
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.93 E-value=0.00053 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 348
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.93 E-value=0.00035 Score=58.88 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|||++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
No 349
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.92 E-value=0.00043 Score=52.37 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 350
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.92 E-value=0.0005 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 351
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.00044 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 352
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.92 E-value=0.00048 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|++..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 353
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.91 E-value=0.00026 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
-+++|+|+.|+|||||++.|++..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999875
No 354
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.91 E-value=0.00038 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998765
No 355
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.91 E-value=0.00052 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999997543
No 356
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.91 E-value=0.00054 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|+.||||||+.+.|+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 357
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.91 E-value=0.00049 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 358
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.90 E-value=0.00051 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 359
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.90 E-value=0.00054 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998863
No 360
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.90 E-value=0.00054 Score=56.09 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+++|+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999864
No 361
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.89 E-value=0.00064 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 362
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.89 E-value=0.00073 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 363
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.00065 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 364
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00055 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
=+++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999854
No 365
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.88 E-value=0.00056 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 366
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.88 E-value=0.00041 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 367
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.88 E-value=0.00057 Score=50.38 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=+++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 368
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.88 E-value=0.0006 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
++.-+.|.||+|+|||||+++|++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999998653
No 369
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00056 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 370
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00058 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
=.++|+|+.|+|||||++.+++-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 371
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.87 E-value=0.00055 Score=51.16 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 372
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.86 E-value=0.00066 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
No 373
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.86 E-value=0.00059 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=.++|+|+.|+|||||++.+++-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 374
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00063 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 375
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.85 E-value=0.0005 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 376
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.85 E-value=0.00068 Score=51.07 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998643
No 377
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.84 E-value=0.00061 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=.++|+|+.|+|||||++.+++-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998653
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.84 E-value=0.00064 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999774
No 379
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.84 E-value=0.00068 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999865
No 380
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.83 E-value=0.00056 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 381
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.83 E-value=0.00076 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 382
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.83 E-value=0.00066 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888754
No 383
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.83 E-value=0.00065 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 384
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00076 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.814 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 385
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.81 E-value=0.00093 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=+++|+|+.|+|||||++.+++-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988654
No 386
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00062 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00065 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|+.|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999888765
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.78 E-value=0.00067 Score=54.79 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 029133 83 SRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g 104 (198)
-+++|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 389
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.77 E-value=0.0007 Score=54.99 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 390
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.76 E-value=0.0007 Score=50.99 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
=+++|+|+.|+|||||++.+++-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 391
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.75 E-value=0.00048 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999987653
No 392
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.001 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+..+.|+||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999988765
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.74 E-value=0.00077 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999997643
No 394
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.74 E-value=0.001 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 395
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.74 E-value=0.00035 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.-+++|.|++||||||+.+.|+..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999987743
No 396
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0008 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 397
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.71 E-value=0.00073 Score=53.12 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=21.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
..+|-+++|.|+.||||||+++.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999876653
No 398
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.70 E-value=0.0008 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.536 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999998753
No 399
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.69 E-value=0.00088 Score=53.53 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.|++..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 400
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.69 E-value=0.0011 Score=57.48 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=31.7
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCeE
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~G~i 113 (198)
+++.+ +.+-+|++++|+|++|+|||||++.|+.......+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 44444 5677899999999999999999998877654333333
No 401
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.68 E-value=0.00093 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|..|+|||||++.|++..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 402
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.66 E-value=0.001 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
++-+++|+|+.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 403
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.66 E-value=0.00043 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.|++..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988643
No 404
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.65 E-value=0.00089 Score=54.74 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
+..+.|.||+|+|||||++.|+..+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4678999999999999999999876443
No 405
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.64 E-value=0.00096 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999987654
No 406
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.64 E-value=0.0011 Score=51.39 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
-+|-+++|.|+.||||||+++.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999999776543
No 407
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.63 E-value=0.0011 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+-+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999997644
No 408
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.63 E-value=0.0011 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 409
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.63 E-value=0.00097 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|..|+|||||++.++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887653
No 410
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.63 E-value=0.0011 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 029133 83 SRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g 104 (198)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 411
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.61 E-value=0.0012 Score=52.08 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+|-+++|.|+.||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999877654
No 412
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.61 E-value=0.00093 Score=57.58 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|++|+|||||++.|+|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999985
No 413
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0012 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 414
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.60 E-value=0.001 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 029133 83 SRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g 104 (198)
=+++|+|+.|+|||||++.+++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999988874
No 415
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.60 E-value=0.00072 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
=+++|+|+.|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999653
No 416
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.59 E-value=0.00032 Score=64.83 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=28.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 76 sl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
++.+.++..+.|+||+|+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 56788999999999999999999999998764
No 417
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.59 E-value=0.0012 Score=52.70 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=24.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+.++.-+.|.||.|+|||||++.|+....
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667799999999999999999988753
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.59 E-value=0.0012 Score=54.98 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+||+|||||||.+.|+..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 799999999999999999987653
No 419
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.58 E-value=0.0016 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+.|.||.|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997654
No 420
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.00037 Score=57.28 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=25.3
Q ss_pred eeeeEEEeCC--CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 73 KNLNFGIDLD--SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 73 ~~isl~i~~G--e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+.+.-.+..| ..+.|.||+|+|||||+++++..+
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333334444 348999999999999999998874
No 421
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.55 E-value=0.0015 Score=50.75 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+|-+++|.|+.||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999877654
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.55 E-value=0.0014 Score=55.87 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=23.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
-....++.|+|++||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999987643
No 423
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.54 E-value=0.00049 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++|+|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988876
No 424
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.0013 Score=48.51 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
....+.|+||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355688999999999999999987653
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.53 E-value=0.0017 Score=50.56 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+-.++|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997654
No 426
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.52 E-value=0.0015 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=24.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
-+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 427
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.52 E-value=0.0017 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
++.+++|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999988763
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.49 E-value=0.0016 Score=50.03 Aligned_cols=25 Identities=52% Similarity=0.666 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999997743
No 429
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0018 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
+++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988754
No 430
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.48 E-value=0.0021 Score=52.90 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=28.6
Q ss_pred cceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 70 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
..++...+.+ .|.-++|+|++|+|||||...|..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4567777777 677899999999999999988876
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.0016 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
..++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998765
No 432
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.47 E-value=0.0013 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+..+.|.||+|+|||||+++|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999866
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.44 E-value=0.0018 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+-+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3478999999999999999998765
No 434
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.0017 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|-+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56799999999999999999987653
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.40 E-value=0.002 Score=50.49 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999977554
No 436
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.39 E-value=0.0021 Score=50.10 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.+|-+++|.|+.||||||+++.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999999887765
No 437
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.38 E-value=0.0022 Score=52.63 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=28.0
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
-|+.+.--+++|+.+.|.|+.|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4555554589999999999999999999877664
No 438
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.38 E-value=0.0028 Score=48.96 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.7
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++..-+.+ .|..++|+||+|+|||||...|+...
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 445544444 56789999999999999998887653
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.37 E-value=0.0023 Score=50.22 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
....-+.|.||.|+|||||.+.|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334557899999999999999998754
No 440
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.36 E-value=0.0016 Score=56.17 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999988766543
No 441
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.36 E-value=0.0023 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.++|+|.+|+|||||++.|.|.....
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred eEEEEecCCCchHHHHHHHhcCceee
Confidence 68999999999999999999976443
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0031 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLI 102 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l 102 (198)
+++|+.+.|.|+.|+|||||.--+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997543
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.31 E-value=0.0023 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
..++|+||+|||||||...|+..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478999999999999999998654
No 444
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.30 E-value=0.003 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
-+++|+|+.|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999987753
No 445
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.29 E-value=0.00043 Score=54.95 Aligned_cols=31 Identities=42% Similarity=0.671 Sum_probs=23.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 73 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.++.+....| +.|.||.|+|||||+++|+..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3334444444 779999999999999999874
No 446
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.28 E-value=0.0032 Score=52.74 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=24.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987776543
No 447
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.23 E-value=0.0022 Score=54.96 Aligned_cols=23 Identities=52% Similarity=0.742 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 448
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.23 E-value=0.0024 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|..++|||||++.|++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 449
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.23 E-value=0.0015 Score=51.92 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++-+|+|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4667899999999999999999987663
No 450
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.22 E-value=0.0035 Score=45.21 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.+.-+.|.||.|+|||++.+.|+......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 45568899999999999999999875443
No 451
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.21 E-value=0.0016 Score=49.89 Aligned_cols=22 Identities=41% Similarity=0.838 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HhcC
Q 029133 84 RIAMVGPNGIGKSTILKL-IAGE 105 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~-l~g~ 105 (198)
+++|+|+.|+|||||++. +.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 5554
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.19 E-value=0.0033 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCcHHHHH-HHHh
Q 029133 81 LDSRIAMVGPNGIGKSTIL-KLIA 103 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLl-k~l~ 103 (198)
+|.++.|+||.|+||||++ +++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999997 5553
No 453
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.16 E-value=0.001 Score=61.21 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~~ 110 (198)
+..|+.+.|+|||||||||++.+++....+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 56789999999999999999988876554443
No 454
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.14 E-value=0.00087 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
=+++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 36899999999999999887653
No 455
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.0031 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987643
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.10 E-value=0.0031 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.-+++|+|+.|+|||||++.|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999987654
No 457
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.06 E-value=0.0038 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|.+|+|-|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 458
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.06 E-value=0.00072 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+++|+|+.|+|||||++.|++-..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999887543
No 459
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.03 E-value=0.0029 Score=52.19 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 460
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.03 E-value=0.0038 Score=51.92 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 72 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
|+.+.--+.+|+.+.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444444589999999999999999999877766543
No 461
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.02 E-value=0.0028 Score=49.41 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+.+..++.|+||.||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556688999999999999999887543
No 462
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.00 E-value=0.0024 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++|+|..++|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999965
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.99 E-value=0.0024 Score=54.84 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.+++|+|++|+||||++..|++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987643
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.98 E-value=0.0044 Score=47.80 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987654
No 465
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.98 E-value=0.0044 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999998887665
No 466
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.95 E-value=0.0035 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.|=.++|+|+.|+|||||++.|++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4556999999999999999999885
No 467
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.93 E-value=0.0052 Score=51.10 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=25.9
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 74 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.+.+.++-=-.++|+|..+|||||||+.|++.
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44555555556999999999999999999875
No 468
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.89 E-value=0.0042 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
-+++|+||+|||||||...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 368999999999999998887644
No 469
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.87 E-value=0.0046 Score=53.08 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=29.7
Q ss_pred ceeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 71 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
-|+.+.--+++|+.+.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4555554589999999999999999999877766543
No 470
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.86 E-value=0.0045 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.+..++++|+.|+|||||++.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 471
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.85 E-value=0.004 Score=55.07 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
=+++|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999865
No 472
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.80 E-value=0.0051 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+..-+.|.||.|+|||||.+.|+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34468899999999999999998753
No 473
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.77 E-value=0.0091 Score=47.14 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
.+.-+.|.||.|+|||+|.+.|+......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 45678899999999999999999876544
No 474
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.77 E-value=0.0067 Score=49.56 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
No 475
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.76 E-value=0.0057 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.++++|..|+|||||++.|++..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999999999854
No 476
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.75 E-value=0.0057 Score=48.37 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEECCC---------CCcHHHHHHHHhc
Q 029133 84 RIAMVGPN---------GIGKSTILKLIAG 104 (198)
Q Consensus 84 ~~~lvG~N---------GsGKSTLlk~l~g 104 (198)
+++|+|.. |+|||||++.+++
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 58999999 9999999999998
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.74 E-value=0.006 Score=48.87 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+.-+.|.||.|+|||||.+.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999998765
No 478
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.73 E-value=0.0059 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~ 107 (198)
.++|+|..|+|||||++.|+|...
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999998653
No 479
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.70 E-value=0.0062 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+..+.|.||+|+||||+.++|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457799999999999999999876
No 480
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.70 E-value=0.0047 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
++..++++|..|+|||||++.|.+..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999863
No 481
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.69 E-value=0.0062 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|..|+|||||++.+++-.
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999864
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.0068 Score=49.75 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999865
No 483
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.69 E-value=0.0063 Score=51.69 Aligned_cols=31 Identities=42% Similarity=0.412 Sum_probs=26.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 75 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 75 isl~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
.=+.|-+|++.+|+|+.|+|||||+..|+..
T Consensus 168 ~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 168 LFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 3356889999999999999999999888764
No 484
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.67 E-value=0.0066 Score=50.24 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=24.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 029133 78 GIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 78 ~i~~Ge~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+.+|..+.|.||.|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5778888999999999999999888753
No 485
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.67 E-value=0.0045 Score=51.05 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|+|+.|+|||||++.+.+-.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 68999999999999999987654
No 486
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.67 E-value=0.0075 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.|..+.|.||.|+|||||++.++...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999887653
No 487
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.65 E-value=0.0067 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.-.+.|.||.|+|||+|.+.|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457788999999999999998765
No 488
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.64 E-value=0.0046 Score=53.30 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=26.1
Q ss_pred EEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCC
Q 029133 77 FGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPS 109 (198)
Q Consensus 77 l~i~~Ge~--~~lvG~NGsGKSTLlk~l~g~~~p~ 109 (198)
-.|..|.. +.|.||.|+|||||.++|+......
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 33445554 8899999999999999999887543
No 489
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.63 E-value=0.0069 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+++|||..++|||||++.|+|-.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 490
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.63 E-value=0.0066 Score=55.18 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+=.++|+|+.|+|||||++.|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44569999999999999999999864
No 491
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.0072 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 82 Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.62 E-value=0.0072 Score=49.89 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
+|..+.|.||.|+|||||.+.++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4668999999999999999999987653
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.61 E-value=0.0078 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGE 105 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~ 105 (198)
-+++|+|+.||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 494
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.60 E-value=0.0077 Score=46.63 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 029133 84 RIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g 104 (198)
+++|+|..|+|||||++-+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 589999999999999977653
No 495
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.59 E-value=0.0048 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 81 ~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.|=.++|+|+.|+|||||++.|++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44459999999999999999999863
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.58 E-value=0.0083 Score=49.89 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
.+..-+.|.||.|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998765
No 497
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.57 E-value=0.0089 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 79 IDLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 79 i~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
+++|+++.|.|+.|+|||||...++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 78999999999999999999866654
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.55 E-value=0.0059 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 029133 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (198)
Q Consensus 83 e~~~lvG~NGsGKSTLlk~l~g~~ 106 (198)
-+++|+|+.++|||||++.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999975
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.53 E-value=0.012 Score=44.34 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q 029133 80 DLDSRIAMVGPNGIGKSTILKLIAG 104 (198)
Q Consensus 80 ~~Ge~~~lvG~NGsGKSTLlk~l~g 104 (198)
-.|.=+.|.|++|+|||||.-.|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3466799999999999999876654
No 500
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.52 E-value=0.0071 Score=52.12 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 029133 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (198)
Q Consensus 84 ~~~lvG~NGsGKSTLlk~l~g~~~p 108 (198)
.+.|+||.|+||||+.+.|+..+..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3778999999999999999998754
Done!