Your job contains 1 sequence.
>029135
MSLTKAAAALQFNACDFFGTKAKPFNLLPSQTQRRSFILKPLVVEARANARTESAKIRNR
RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFP
LSRKLLSVLVKSLSRLVLHLTLRKFHLMIVMAPVVVRECKPLRFQYPVMASCNKDRLSFL
LFLTVSLCHAKFRLTSFA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029135
(198 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007690 - symbol:EMB3105 "EMBRYO DEFECTIVE 310... 135 3.6e-09 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 126 3.3e-08 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 117 2.9e-07 1
TIGR_CMR|DET_0490 - symbol:DET_0490 "ribosomal protein L1... 103 1.1e-05 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 103 1.1e-05 1
UNIPROTKB|P66076 - symbol:rplR "50S ribosomal protein L18... 91 0.00028 1
>TAIR|locus:2007690 [details] [associations]
symbol:EMB3105 "EMBRYO DEFECTIVE 3105" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0007389 "pattern
specification process" evidence=RCA] [GO:0008361 "regulation of
cell size" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0009832 "plant-type cell wall
biogenesis" evidence=RCA] [GO:0009926 "auxin polar transport"
evidence=RCA] [GO:0010015 "root morphogenesis" evidence=RCA]
[GO:0010075 "regulation of meristem growth" evidence=RCA]
[GO:0040007 "growth" evidence=RCA] [GO:0048653 "anther development"
evidence=RCA] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:AC007932 EMBL:AF336922 IPI:IPI00547186 PIR:E96523
RefSeq:NP_175268.1 UniGene:At.15427 UniGene:At.67857
ProteinModelPortal:Q9SX68 SMR:Q9SX68 STRING:Q9SX68 PaxDb:Q9SX68
PRIDE:Q9SX68 ProMEX:Q9SX68 EnsemblPlants:AT1G48350.1 GeneID:841255
KEGG:ath:AT1G48350 GeneFarm:175 TAIR:At1g48350 eggNOG:COG0256
HOGENOM:HOG000248742 InParanoid:Q9SX68 KO:K02881 OMA:GNKYHGR
PhylomeDB:Q9SX68 ProtClustDB:CLSN2682213 Genevestigator:Q9SX68
GermOnline:AT1G48350 TIGRFAMs:TIGR00060 Uniprot:Q9SX68
Length = 170
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 39/107 (36%), Positives = 53/107 (49%)
Query: 1 MSLTKAAAALQFNACDFFGTKAKPFNLLPSQTQRRSFILKPLVVEARANARTESAKIRNR 60
+SL +A N KP++ S Q RS +VVEA+ +E R+
Sbjct: 10 VSLITNRSAFLGNGLQHRAVFLKPWS--SSSLQSRS-----MVVEAKTKTSSEDRIARHS 62
Query: 61 RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSI 107
RI+KK NGT +PRL VF S+K LY ++DD L ST Q+ I
Sbjct: 63 RIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPI 109
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
R K R+ R++KK +GTP +PRL+V+ S K +YA ++DD + + L STL +RG
Sbjct: 7 RNLERKRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRG 65
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 42 LVVEARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGS 101
++ +A NA + K R+ R++ K GT +PRL+VF S++ +YA ++DD N L S
Sbjct: 1 MITKADKNA---TRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSAS 57
Query: 102 TLQQSIRGNG 111
TL + + NG
Sbjct: 58 TLDKDLALNG 67
>TIGR_CMR|DET_0490 [details] [associations]
symbol:DET_0490 "ribosomal protein L18" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_181234.1 ProteinModelPortal:Q3Z965
STRING:Q3Z965 GeneID:3230240 KEGG:det:DET0490 PATRIC:21608049
BioCyc:DETH243164:GJNF-490-MONOMER Uniprot:Q3Z965
Length = 121
Score = 103 (41.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 46 ARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQ 105
A+ NAR E+ +R+ R++KK +GT +PRL VF S + +Y +++D C GSTL Q
Sbjct: 2 AKVNAR-EARIVRHERLRKKVSGTEARPRLCVFRSIENIYTQVINDN---C---GSTLVQ 54
Query: 106 S 106
+
Sbjct: 55 A 55
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 103 (41.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQ 105
R R++KK GT +PRL+VF S + +YA ++DD L ST+Q+
Sbjct: 14 RKTRVRKKIRGTTERPRLNVFKSAQHIYAQIIDDTTGTTLVSASTVQK 61
>UNIPROTKB|P66076 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:C70644 RefSeq:NP_215234.1 RefSeq:NP_335165.1
RefSeq:YP_006514064.1 ProteinModelPortal:P66076 SMR:P66076
PRIDE:P66076 EnsemblBacteria:EBMYCT00000002810
EnsemblBacteria:EBMYCT00000070227 GeneID:13318609 GeneID:888457
GeneID:926038 KEGG:mtc:MT0745 KEGG:mtu:Rv0720 KEGG:mtv:RVBD_0720
PATRIC:18123373 TubercuList:Rv0720 Uniprot:P66076
Length = 122
Score = 91 (37.1 bits), Expect = 0.00028, P = 0.00028
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
R+ R++KK +GT +PRL V S + ++ LV+D N + S+++ +RG
Sbjct: 16 RHTRLRKKLSGTAERPRLVVHRSARHIHVQLVNDLNGTTVAAASSIEADVRG 67
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.137 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 198 180 0.00092 109 3 11 22 0.45 31
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 574 (61 KB)
Total size of DFA: 141 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.54u 0.13s 14.67t Elapsed: 00:00:01
Total cpu time: 14.54u 0.13s 14.67t Elapsed: 00:00:01
Start: Fri May 10 07:10:19 2013 End: Fri May 10 07:10:20 2013