BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029135
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX68|RK18_ARATH 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana
GN=RPL18 PE=1 SV=1
Length = 170
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 27 LLPSQTQRRSFILKP----------LVVEARANARTESAKIRNRRIQKKFNGTPTKPRLS 76
L + Q R+ LKP +VVEA+ +E R+ RI+KK NGT +PRL
Sbjct: 19 FLGNGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLC 78
Query: 77 VFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKS 132
VF S+K LY ++DD L ST Q+ I + +++K+ V+ KS
Sbjct: 79 VFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKS 134
>sp|B7KI02|RL18_CYAP7 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424)
GN=rplR PE=3 SV=1
Length = 120
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG- 109
RTES + R+ RI++K GTP++PRL+VF S+ +YA ++DD + L STL + ++G
Sbjct: 5 RTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE 64
Query: 110 -NGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
+ C + KL++ L K + ++V +H I RE
Sbjct: 65 FSSGATCEASEAVG-KLVAQRALAKGIEKVVFDRGGNLYHGRIRALAQAAREA 116
>sp|Q8SAY0|RK18_ORYSJ 50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp.
japonica GN=RPL18 PE=2 SV=1
Length = 170
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 29 PSQTQRRSFILKPLVVEARANARTESAK--IRNRRIQKKFNGTPTKPRLSVFCSDKQLYA 86
PSQ +RR+ LVV A+ T A R+ R++KK +GT +PRLSVF S+K LYA
Sbjct: 33 PSQARRRA----SLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYA 88
Query: 87 MLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKS 132
++DD L ST+ +S+ + +++K+ V+ KS
Sbjct: 89 QVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKS 134
>sp|B1IGD8|RL18_CLOBK 50S ribosomal protein L18 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rplR PE=3 SV=1
Length = 119
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 49 NARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
N R++S + R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ +Q
Sbjct: 5 NDRSQSRERRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSAEQGFD 64
Query: 109 GNGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
G G+ L K+++ L K L ++V +H I RE
Sbjct: 65 GVGSNKEGA--KLVGKMVAEKALEKGLKKVVFDRGGFIYHGRIKELAEGAREA 115
>sp|A9FGF8|RL18_SORC5 50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56)
GN=rplR PE=3 SV=1
Length = 119
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R RI+KK GTP +PRLSVF S K +YA ++DD + K L STL + ++G+
Sbjct: 11 RKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGS 63
>sp|Q7NEG8|RL18_GLOVI 50S ribosomal protein L18 OS=Gloeobacter violaceus (strain PCC
7421) GN=rplR PE=3 SV=1
Length = 120
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN--GNPPC 115
R++RI++K GTP +PRL+V+ S++ +YA ++DD +++ L STL+ +R G C
Sbjct: 12 RHQRIRRKIAGTPEQPRLAVYRSNRHIYAQVIDDVHQRTLVAASTLEAPLRSGEEGTATC 71
Query: 116 STIFPLSR 123
+ R
Sbjct: 72 EAATAVGR 79
>sp|Q3MFA6|RL18_ANAVT 50S ribosomal protein L18 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplR PE=3 SV=1
Length = 120
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R ES + R+RR++ K G+P +PRL+VF S++ +YA ++DD L ST++ ++ +
Sbjct: 5 RRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPEVKSS 64
Query: 111 --GNPPCSTIFPLSRKLLSV--LVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
C + KL++V L K ++++V +H I RE
Sbjct: 65 LASGANCEASSQIG-KLIAVRSLEKGITKVVFDRGGNLYHGRIKALAEAAREA 116
>sp|B7K233|RL18_CYAP8 50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 8801)
GN=rplR PE=3 SV=1
Length = 120
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQ 104
+R ES + R+RRI+KK NGTP PRL+VF S+ +YA ++DD + + ST++
Sbjct: 4 SRKESVQRRHRRIRKKVNGTPNCPRLAVFRSNLHIYAQIIDDVGQHTIAAASTVE 58
>sp|C3KVN5|RL18_CLOB6 50S ribosomal protein L18 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=rplR PE=3 SV=1
Length = 119
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 49 NARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
N R++S + R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ ++
Sbjct: 5 NDRSQSRERRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDIEGKTLVAASSAEKGFD 64
Query: 109 GNGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
G G+ L K+++ L K L ++V +H I RE
Sbjct: 65 GVGSNKEGA--KLVGKMVAEKALEKGLKKVVFDRGGFIYHGRIKELAEGAREA 115
>sp|B1KSK9|RL18_CLOBM 50S ribosomal protein L18 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rplR PE=3 SV=1
Length = 119
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 47 RANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
+ N R++S + R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ ++
Sbjct: 3 KKNDRSQSRERRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSSEKG 62
Query: 107 IRGNGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
G G+ L K+++ L K L ++V +H I RE
Sbjct: 63 FDGVGSNKEGA--KLVGKMIAEKALEKGLKKVVFDRGGFIYHGRIKELAEGAREA 115
>sp|Q0SQG0|RL18_CLOPS 50S ribosomal protein L18 OS=Clostridium perfringens (strain SM101
/ Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E+ + R+ R++KK GTP +PRLSV+ S+K +YA ++DD N L S+L ++I
Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK 66
Query: 111 GN 112
G+
Sbjct: 67 GS 68
>sp|Q8XHT9|RL18_CLOPE 50S ribosomal protein L18 OS=Clostridium perfringens (strain 13 /
Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E+ + R+ R++KK GTP +PRLSV+ S+K +YA ++DD N L S+L ++I
Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK 66
Query: 111 GN 112
G+
Sbjct: 67 GS 68
>sp|Q0TMR2|RL18_CLOP1 50S ribosomal protein L18 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R E+ + R+ R++KK GTP +PRLSV+ S+K +YA ++DD N L S+L ++I
Sbjct: 7 RKEARERRHLRVRKKVFGTPERPRLSVYRSEKNIYAQIIDDVNAVTLVAASSLDKAIEVK 66
Query: 111 GN 112
G+
Sbjct: 67 GS 68
>sp|A8LC40|RL18_FRASN 50S ribosomal protein L18 OS=Frankia sp. (strain EAN1pec) GN=rplR
PE=3 SV=1
Length = 124
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 48 ANARTESAKIRNR-RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
A+AR +AK+R R++KK +GTP +PRL V S + +YA ++DD L STL+
Sbjct: 7 ASARRRTAKLRRHVRVRKKVSGTPIRPRLVVTRSSRHIYAQVIDDVAGHTLASASTLEDG 66
Query: 107 IRGNGNPPCSTIFPLSRKLLS-VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
+R + + + R + + +V R +H I RE
Sbjct: 67 LRASDGDKSAKAREVGRLVAERARAAGIDAVVFDRGGRTYHGRIAALADAAREG 120
>sp|A9KJH8|RL18_CLOPH 50S ribosomal protein L18 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1
Length = 122
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
++ RI+ +F+GTPT+PRL+VF S+ +YA ++DD L STL++ ++
Sbjct: 14 KHNRIRNRFSGTPTRPRLAVFRSNNHMYAQIIDDTVGNTLVSASTLEKGVK 64
>sp|Q8YPJ4|RL18_NOSS1 50S ribosomal protein L18 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplR PE=3 SV=1
Length = 120
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R ES + R+RR++ K G+P +PRL+VF S++ +YA ++DD L ST++ ++ +
Sbjct: 5 RRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPELKSS 64
Query: 111 --GNPPCSTIFPLSRKLLSV--LVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
C + KL++ L K ++++V +H I RE
Sbjct: 65 LASGSNCEASAQIG-KLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREA 116
>sp|B0K5Q9|RL18_THEPX 50S ribosomal protein L18 OS=Thermoanaerobacter sp. (strain X514)
GN=rplR PE=3 SV=1
Length = 121
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
R E K R+ R++KK GTP +PRL+VF S K +YA ++DD L STL +RG
Sbjct: 7 RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELRG 65
>sp|B0KCL6|RL18_THEP3 50S ribosomal protein L18 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rplR PE=3 SV=1
Length = 121
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
R E K R+ R++KK GTP +PRL+VF S K +YA ++DD L STL +RG
Sbjct: 7 RNELRKRRHLRVRKKVFGTPERPRLNVFRSLKHIYAQIIDDTKGHTLVHASTLDPELRG 65
>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1
Length = 122
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 38/52 (73%)
Query: 57 IRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
+R++R++KK GTP +PRL+VF S+K +YA ++DD L ST++++++
Sbjct: 13 VRHKRLRKKIFGTPERPRLAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMK 64
>sp|Q3A9T2|RL18_CARHZ 50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rplR PE=3 SV=1
Length = 122
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
K R+ R++KK +GTP +PRL+V+ S K +YA ++DD + + L STL +RG
Sbjct: 12 KRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRG 65
>sp|C1FMT5|RL18_CLOBJ 50S ribosomal protein L18 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=rplR PE=3 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 47 RANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
+ N R++S R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ ++
Sbjct: 3 KKNDRSQSRTRRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSSEKG 62
Query: 107 IRGNGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
G G+ L K+++ L K L ++V +H I RE
Sbjct: 63 FDGVGSNKEGA--KLVGKMVAEKALEKGLKKVVFDRGGFIYHGRIKELAEGAREA 115
>sp|A5I7J0|RL18_CLOBH 50S ribosomal protein L18 OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 47 RANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
+ N R++S R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ ++
Sbjct: 3 KKNDRSQSRTRRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSSEKG 62
Query: 107 IRGNGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
G G+ L K+++ L K L ++V +H I RE
Sbjct: 63 FDGVGSNKEGA--KLVGKMVAEKALEKGLKKVVFDRGGFIYHGRIKELAEGAREA 115
>sp|A7FZ53|RL18_CLOB1 50S ribosomal protein L18 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=rplR PE=3 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 47 RANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
+ N R++S R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ ++
Sbjct: 3 KKNDRSQSRTRRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSSEKG 62
Query: 107 IRGNGNPPCSTIFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
G G+ L K+++ L K L ++V +H I RE
Sbjct: 63 FDGVGSNKEGA--KLVGKMVAEKALEKGLKKVVFDRGGFIYHGRIKELAEGAREA 115
>sp|B2ITP0|RL18_NOSP7 50S ribosomal protein L18 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rplR PE=3 SV=1
Length = 120
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQ----QS 106
R ES R+RR++ K G+P +PRL+VF S++ +YA ++DD + + STL+ S
Sbjct: 5 RRESKNRRHRRVRGKVVGSPERPRLAVFRSNEHIYAQVIDDSQHQTIVAASTLEPELKSS 64
Query: 107 IRGNGNPPCSTIFPLSRKLLSV--LVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
+ N S KL++V L K ++++V +H + RE
Sbjct: 65 LASGANRDASVQVG---KLIAVRSLEKGITKVVFDRGGNLYHGRVKALADAAREA 116
>sp|B9KZX2|RL18_THERP 50S ribosomal protein L18 OS=Thermomicrobium roseum (strain ATCC
27502 / DSM 5159 / P-2) GN=rplR PE=3 SV=1
Length = 124
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 56 KIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPC 115
K R+ R++ K GTP +PRL+VF S+K +YA ++DD L STL++ +R P
Sbjct: 13 KRRHLRVRAKVFGTPERPRLNVFRSNKHIYAQIIDDTRGHTLVAASTLEKEVRERFPDPH 72
Query: 116 STIFPLSRKLLSV-----LVKSLSRLVLHLTLRKFH 146
I +R + V L K ++R+V K+H
Sbjct: 73 PKI-EEARIVGQVVGERALAKGITRVVFDRGGYKYH 107
>sp|Q2JFG0|RL18_FRASC 50S ribosomal protein L18 OS=Frankia sp. (strain CcI3) GN=rplR PE=3
SV=1
Length = 124
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 48 ANARTESAKIRNR-RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
A++R +AK+R R++KK GTP++PRL V S + +YA ++DD L STL S
Sbjct: 7 ASSRRRTAKLRRHVRVRKKVAGTPSRPRLVVTRSSRHIYAQVIDDVAGHTLASASTLDVS 66
Query: 107 IRGN 110
+RG
Sbjct: 67 LRGG 70
>sp|Q1D759|RL18_MYXXD 50S ribosomal protein L18 OS=Myxococcus xanthus (strain DK 1622)
GN=rplR PE=3 SV=2
Length = 118
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 41 PLVVEARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFG 100
P +EAR R RI+KK +GT +PRL+V+ S K +YA +VDD K L F
Sbjct: 2 PTKIEARLK--------RKNRIRKKLSGTTERPRLTVYKSLKHIYAQVVDDTTGKTLAFA 53
Query: 101 STLQQSIRG 109
S+L + ++G
Sbjct: 54 SSLSKDLKG 62
>sp|Q97EJ4|RL18_CLOAB 50S ribosomal protein L18 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rplR PE=3 SV=1
Length = 117
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQ--SIR 108
+ +S K R+ R++ K +GTP +PRL+V+ S+K +YA ++DD N L STL + S +
Sbjct: 4 KVQSRKRRHLRVRNKISGTPERPRLAVYRSEKNIYAQVIDDVNGTTLVSASTLDKDFSAK 63
Query: 109 GNGNPPCSTIFP--LSRKLLSVLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
N + + +++K L K + ++V +H I RE
Sbjct: 64 AGSNKEAAKLVGGIVAKKALD---KGIKQVVFDRGGYIYHGRIKELAEAAREA 113
>sp|B0C1E8|RL18_ACAM1 50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC
11017) GN=rplR PE=3 SV=1
Length = 118
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R ++ + R++R+++K GT +PRL+VF S++ +YA ++DD + L ST++ ++ +
Sbjct: 5 RRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAASTVESDLKSS 64
Query: 111 GNPPCS 116
C
Sbjct: 65 SGATCD 70
>sp|B8G6Q9|RL18_CHLAD 50S ribosomal protein L18 OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=rplR PE=3 SV=1
Length = 120
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCST 117
R+ RI+K+ +GTP +PRL+VF S +YA ++DD L ST+++ G+ +
Sbjct: 13 RHNRIRKRVSGTPERPRLNVFRSHAHIYAQVIDDTVGHTLVAASTIEKGWSGSPELTKTQ 72
Query: 118 IFPLSRKLLS--VLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
L KL++ L ++++V K+H + RE
Sbjct: 73 EAALVGKLIAERALQAGITKVVFDRGGYKYHGRVKALAEAAREA 116
>sp|B5YDV9|RL18_DICT6 50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1
Length = 122
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
+R E KIR+ RI+KK GT +PRL+V+ S + +YA ++DD L S+L++ IR
Sbjct: 6 SRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIR 64
>sp|B2UYC6|RL18_CLOBA 50S ribosomal protein L18 OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=rplR PE=3 SV=1
Length = 119
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGN 112
R+ R++KK GTP +PRLSVF S+K +YA ++DD N + S+L + NG
Sbjct: 14 RHLRVRKKVFGTPDRPRLSVFRSEKNIYAQIIDDVNAVTIVAASSLDKEFSTNGG 68
>sp|Q65P91|RL18_BACLD 50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rplR PE=3 SV=1
Length = 120
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
R+ R++ K +GTP +PRL+VF S+K +YA ++DD N L STL +
Sbjct: 14 RHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKD 62
>sp|Q8DML7|RL18_THEEB 50S ribosomal protein L18 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplR PE=3 SV=1
Length = 120
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR-- 108
RT + + R++RI++K GT +PRL+VF S + +YA ++DD L S+L+ +R
Sbjct: 5 RTAARQSRHQRIRRKVKGTSDRPRLAVFRSHQHIYAQVIDDTRHHTLVAASSLEPELRQK 64
Query: 109 -GNGNPPCSTI 118
G G+ ++I
Sbjct: 65 LGKGSTCAASI 75
>sp|Q5FM75|RL18_LACAC 50S ribosomal protein L18 OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=rplR PE=3 SV=1
Length = 118
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSI 107
R+RRI+ K +GT +PRLS+F S+K +YA L+DD L STL +++
Sbjct: 14 RHRRIRGKISGTAERPRLSIFRSNKNIYAQLIDDVAGVTLASASTLDENV 63
>sp|Q110C2|RL18_TRIEI 50S ribosomal protein L18 OS=Trichodesmium erythraeum (strain
IMS101) GN=rplR PE=3 SV=1
Length = 120
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
R +S R+RR++KK GT +PRLSVF S+ +YA ++DD + L STL+ ++
Sbjct: 5 RKDSIIKRHRRVRKKVFGTSERPRLSVFRSNMHIYAQVIDDTKQHTLVAASTLEAEVK 62
>sp|A8F4S7|RL18_THELT 50S ribosomal protein L18 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplR PE=3 SV=1
Length = 122
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG------NG 111
R+ RI+KK GT +PRLSVF S+K +YA ++DD L STL +R N
Sbjct: 14 RHLRIRKKVFGTSERPRLSVFRSEKHIYAQIIDDTKGHTLVSASTLDPDLRARIAKTYNK 73
Query: 112 NPPCSTIFPLSRKLLSVLVKSLSRLVLHLTLRKFHLMIVMAPVVVREC 159
+++K LS K +S++V KFH I RE
Sbjct: 74 EAAKEVGKLVAQKALS---KGISQVVFDRGGFKFHGRIRELADAAREA 118
>sp|A7GJ58|RL18_CLOBL 50S ribosomal protein L18 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rplR PE=3 SV=1
Length = 119
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 47 RANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQS 106
+ N R++S R+ R++KK GT +PRLSV+ S+K +YA L+DD K L S+ ++
Sbjct: 3 KKNDRSQSRTRRHMRVRKKIFGTAERPRLSVYRSEKHIYAQLIDDVEGKTLVAASSSEKG 62
>sp|B0JHY8|RL18_MICAN 50S ribosomal protein L18 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplR PE=3 SV=1
Length = 120
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
+R ES + R++R+++K NGT +PRLSVF S+ +YA ++DD + L STL+ ++RG
Sbjct: 4 SRKESVRRRHQRVRRKINGTAERPRLSVFRSNNHIYAQIIDDVAQHTLAAASTLEATLRG 63
>sp|Q47LK9|RL18_THEFY 50S ribosomal protein L18 OS=Thermobifida fusca (strain YX) GN=rplR
PE=3 SV=1
Length = 128
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 61 RIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGN 110
R++KK GTP +PRL V S K + A +VDD L STL+ SIRG
Sbjct: 25 RVRKKVRGTPERPRLVVTRSLKHIVAQIVDDTKGHTLVSASTLEASIRGE 74
>sp|Q67JV9|RL18_SYMTH 50S ribosomal protein L18 OS=Symbiobacterium thermophilum (strain T
/ IAM 14863) GN=rplR PE=3 SV=1
Length = 123
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR-- 108
R ++ + R R++K +GTP +PRL+VF S++ +YA ++DD + L STL +R
Sbjct: 7 RNKARRKRQLRVRKTVHGTPERPRLNVFRSNQNIYAQIIDDTVGRTLVSASTLDPEVRSR 66
Query: 109 ---GNGNPPCSTI 118
GN + I
Sbjct: 67 LQGSGGNKAAAAI 79
>sp|Q8R7X0|RL18_THETN 50S ribosomal protein L18 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rplR PE=3 SV=1
Length = 121
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 37 FILKPLVVEARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKC 96
I+KP +R E K R+ R++KK GTP +PRL+V+ S K +YA ++DD
Sbjct: 1 MIIKP--------SRNELRKKRHLRVRKKVFGTPERPRLNVYKSLKHIYAQIIDDTKGHT 52
Query: 97 LFFGSTLQQSIR 108
L STL +R
Sbjct: 53 LVSASTLDPELR 64
>sp|C4Z2U6|RL18_EUBE2 50S ribosomal protein L18 OS=Eubacterium eligens (strain ATCC 27750
/ VPI C15-48) GN=rplR PE=3 SV=1
Length = 122
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIR 108
++RR++ +F+GT +PRL+VF S+ +YA ++DD K L STL + ++
Sbjct: 14 KHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEVK 64
>sp|A9VP93|RL18_BACWK 50S ribosomal protein L18 OS=Bacillus weihenstephanensis (strain
KBAB4) GN=rplR PE=3 SV=1
Length = 120
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRG 109
A+ + K R+ R++ K GT +PRL+V+ S++ +YA ++DD N L STL + +
Sbjct: 6 AKNATRKKRHARVRAKLTGTAERPRLNVYRSNQHIYAQVIDDVNGVTLVSASTLDKDLAL 65
Query: 110 NG--NPPCST 117
NG N +T
Sbjct: 66 NGTSNTEAAT 75
>sp|B7IT35|RL18_BACC2 50S ribosomal protein L18 OS=Bacillus cereus (strain G9842) GN=rplR
PE=3 SV=1
Length = 120
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 42 LVVEARANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGS 101
++ +A NA + K R+ R++ K GT +PRL+VF S++ +YA ++DD N L S
Sbjct: 1 MITKADKNA---TRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSAS 57
Query: 102 TLQQSIRGNG--NPPCST 117
TL + + NG N +T
Sbjct: 58 TLDKDLALNGTSNTEAAT 75
>sp|P46899|RL18_BACSU 50S ribosomal protein L18 OS=Bacillus subtilis (strain 168) GN=rplR
PE=1 SV=1
Length = 120
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQ--SIRGNGNPPC 115
R+ R++ K +GT +PRL+VF S+K +YA ++DD N L STL + ++ G+
Sbjct: 14 RHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVESTGDTSA 73
Query: 116 ST 117
+T
Sbjct: 74 AT 75
>sp|Q74L74|RL18_LACJO 50S ribosomal protein L18 OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=rplR PE=3 SV=1
Length = 119
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNG 111
R++RI+ K +GT +PRLSVF S+K +YA L+DD L ST ++I G
Sbjct: 14 RHKRIRGKISGTAERPRLSVFRSNKNIYAQLIDDVEGVTLASASTNDKNISAEG 67
>sp|Q046B0|RL18_LACGA 50S ribosomal protein L18 OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=rplR PE=3 SV=1
Length = 119
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNG 111
R++RI+ K +GT +PRLSVF S+K +YA L+DD L ST ++I G
Sbjct: 14 RHKRIRGKISGTAERPRLSVFRSNKNIYAQLIDDVEGVTLASASTNDKNISAEG 67
>sp|Q04BZ9|RL18_LACDB 50S ribosomal protein L18 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=rplR PE=3 SV=1
Length = 119
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSI 107
R+RR++ K +GT +PRLSVF S+ +YA L+DD L STL +S+
Sbjct: 14 RHRRVRGKISGTAERPRLSVFRSNTNIYAQLIDDVAGVTLASASTLDKSV 63
>sp|Q1GBK2|RL18_LACDA 50S ribosomal protein L18 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplR PE=3
SV=1
Length = 119
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 58 RNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSI 107
R+RR++ K +GT +PRLSVF S+ +YA L+DD L STL +S+
Sbjct: 14 RHRRVRGKISGTAERPRLSVFRSNTNIYAQLIDDVAGVTLASASTLDKSV 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,830,538
Number of Sequences: 539616
Number of extensions: 2111447
Number of successful extensions: 5585
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5111
Number of HSP's gapped (non-prelim): 482
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)