Query 029135
Match_columns 198
No_of_seqs 149 out of 1045
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_Q Ribosomal protein L18; 100.0 1.2E-39 4.2E-44 268.2 -1.8 142 14-159 9-157 (161)
2 3r8s_O 50S ribosomal protein L 100.0 2.3E-36 7.9E-41 236.4 7.4 106 51-159 2-112 (116)
3 3v2d_S 50S ribosomal protein L 100.0 1.8E-35 6.2E-40 230.9 6.3 102 50-159 2-108 (112)
4 1ovy_A 50S ribosomal protein L 100.0 1.8E-35 6.1E-40 233.0 5.0 106 50-159 6-116 (120)
5 2zjr_L 50S ribosomal protein L 100.0 2.2E-33 7.7E-38 219.7 -1.0 100 52-159 3-110 (114)
6 1vq8_N 50S ribosomal protein L 99.9 9.1E-27 3.1E-31 195.3 5.6 105 50-159 13-126 (187)
7 3j21_O 50S ribosomal protein L 99.9 1E-26 3.6E-31 197.1 2.3 105 50-159 13-127 (203)
8 2zkr_n 60S ribosomal protein L 99.8 4.2E-21 1.4E-25 170.3 5.6 107 51-159 23-169 (297)
9 4a17_M RPL5, 60S ribosomal pro 99.8 3.8E-20 1.3E-24 164.5 7.7 84 51-136 23-112 (301)
10 3u5e_D 60S ribosomal protein L 99.8 5E-20 1.7E-24 163.5 8.3 88 51-140 23-124 (297)
11 3iz5_Q 60S ribosomal protein L 99.6 2.7E-16 9.2E-21 140.0 5.7 85 51-140 27-125 (304)
12 3bbn_K Ribosomal protein S11; 95.9 0.01 3.5E-07 47.7 5.0 65 71-140 28-92 (140)
13 2vqe_K 30S ribosomal protein S 95.9 0.017 5.7E-07 45.6 6.2 65 71-140 15-79 (129)
14 3j20_M 30S ribosomal protein S 95.2 0.077 2.6E-06 42.4 8.0 66 72-141 14-79 (137)
15 3r8n_K 30S ribosomal protein S 94.7 0.051 1.7E-06 42.1 5.4 63 73-140 7-69 (117)
16 2xzm_K RPS14E; ribosome, trans 91.8 0.2 6.8E-06 40.6 4.8 65 72-140 28-92 (151)
17 3u5c_O RP59A, 40S ribosomal pr 89.5 0.27 9.3E-06 39.2 3.6 66 71-140 13-78 (137)
18 2hc5_A ORF 99, hypothetical pr 53.0 52 0.0018 25.1 7.1 40 59-98 44-83 (117)
19 3bbo_W Ribosomal protein L24; 43.6 4.9 0.00017 33.8 0.0 56 1-61 4-59 (191)
20 1r9i_A MU-conotoxin PIIIA; cys 22.6 22 0.00076 21.2 0.4 9 155-163 12-20 (26)
No 1
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.2e-39 Score=268.19 Aligned_cols=142 Identities=27% Similarity=0.328 Sum_probs=103.8
Q ss_pred cccccCCCCCccccccCCccccccccchhhhhhh-hcchHHHHHHHHHHHHhhhcCCCCCCeEEEEeccceEEEEEEecC
Q 029135 14 ACDFFGTKAKPFNLLPSQTQRRSFILKPLVVEAR-ANARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQ 92 (198)
Q Consensus 14 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~K~e~R~rR~rRiRkKI~GTa~RPRLsVfRSNKHIYAQIIDD~ 92 (198)
.+.+|++++.++...+.+. ... ..++.+||+ .++|++.|.+||+|+|+||.||+++|||+|||||+|||||||||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~k~~~R~rR~~RiR~ki~gt~~rPRL~V~rSnkhIyAQvIdd~ 85 (161)
T 3bbo_Q 9 QSAFASSQQLPLLPKFAAA-KPL--LPSFPIIEAKAKTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDS 85 (161)
T ss_dssp ----------------------------------CCCCCCCCGGGTSCCSCSGGGGSSSCCCCEEEECSSCEEEEEECCT
T ss_pred HHhhccccccccccccCCC-CCC--CCceeeEeeccCchHHHHHHHHHHHHHhhccCCCCCEEEEEecCCeEEEEEEECC
Confidence 3345566655554444331 111 124555666 778989999999999999999999999999999999999999999
Q ss_pred CCeEEEEEechhhhhcCCCC-CCCCCHHHHHHHHHHHHHHHHHhcChhHHH-----Hhhhheeehhhhhhhcc
Q 029135 93 NKKCLFFGSTLQQSIRGNGN-PPCSTIFPLSRKLLSVLVKSLSRLVLHLTL-----RKFHLMIVMAPVVVREC 159 (198)
Q Consensus 93 ~gkTLaSASTlek~lk~~l~-~~~~NieAA~~~VGklLAerAkeaGI~~~v-----~kyHg~i~~~~~~~~~~ 159 (198)
+|+||++|||+|+++++.++ ++++|+++|+ +||++|||+|+++||++++ ++|||+|..+++-.||-
T Consensus 86 ~g~tLasASTlek~lk~~l~~g~~~n~~AA~-~VG~liAeRA~e~GI~~VvFDRgg~~YhGRVkAladaaRe~ 157 (161)
T 3bbo_Q 86 KMHTLASASTMQKSISEELDYSSSPTIEVAK-KVGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREK 157 (161)
T ss_dssp TSCEEEEEEHHHHHHHHCCTTCCSSSHHHHH-HHHHHSSSHHHHTSSCCCCCCCSSSCSSSTTHHHHHHHTTT
T ss_pred CCEEEEEEeCCcHHHHhhccccCCCCHHHHH-HHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHh
Confidence 99999999999999985431 2579999999 9999999999999999999 89999999999999874
No 2
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=2.3e-36 Score=236.36 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 029135 51 RTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLV 130 (198)
Q Consensus 51 K~e~R~rR~rRiRkKI~GTa~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLA 130 (198)
|++.|.+|++|+|+||.| +++|||+||+||+|||||||||++|+||+||||+|+++++++ .+++|++||+ .||++||
T Consensus 2 ~~~~r~~r~~r~R~ki~~-~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~-~~~~n~~AA~-~vG~llA 78 (116)
T 3r8s_O 2 KKSARIRRATRARRKLQE-LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQL-KYTGNKDAAA-AVGKAVA 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTC-SCSSSHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc-CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhcccc-CCCCCHHHHH-HHHHHHH
Confidence 677899999999999999 799999999999999999999999999999999999999987 6789999999 9999999
Q ss_pred HHHHhcChhHHH-----Hhhhheeehhhhhhhcc
Q 029135 131 KSLSRLVLHLTL-----RKFHLMIVMAPVVVREC 159 (198)
Q Consensus 131 erAkeaGI~~~v-----~kyHg~i~~~~~~~~~~ 159 (198)
++|+++||++++ ++|||+|.-+++-.||.
T Consensus 79 ~Ral~~GI~~vvfDrgg~~yhGrV~Ala~~are~ 112 (116)
T 3r8s_O 79 ERALEKGIKDVSFDRSGFQYHGRVQALADAAREA 112 (116)
T ss_dssp HHHHTTTCCCCEEECTTSCSSSHHHHHHHHHHHT
T ss_pred HHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHh
Confidence 999999999999 89999999999998874
No 3
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=1.8e-35 Score=230.92 Aligned_cols=102 Identities=25% Similarity=0.271 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 029135 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVL 129 (198)
Q Consensus 50 ~K~e~R~rR~rRiRkKI~GTa~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklL 129 (198)
+|++.|.+|++|+|+||+||+ +|||+||+||+|||||||||++|+||+||||+|++++ ++|++||+ +||++|
T Consensus 2 ~~~~~r~~r~~r~r~ki~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k------~~n~~AA~-~vG~ll 73 (112)
T 3v2d_S 2 ARLTAYERRKFRVRNRIKRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK------GNKTEVAR-QVGRAL 73 (112)
T ss_dssp -CCCHHHHHHHHHHHHHHHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC------CCHHHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc------CCCHHHHH-HHHHHH
Confidence 567789999999999999998 9999999999999999999999999999999999974 37999999 999999
Q ss_pred HHHHHhcChhHHH-----Hhhhheeehhhhhhhcc
Q 029135 130 VKSLSRLVLHLTL-----RKFHLMIVMAPVVVREC 159 (198)
Q Consensus 130 AerAkeaGI~~~v-----~kyHg~i~~~~~~~~~~ 159 (198)
|++|+++||++++ ++|||+|.-+++-.||.
T Consensus 74 A~ra~~~GI~~vvfDrgg~~yhGrV~Ala~~are~ 108 (112)
T 3v2d_S 74 AEKALALGIKQVAFDRGPYKYHGRVKALAEGAREG 108 (112)
T ss_dssp HHHHHTTTCCBCEEECTTSCSCSSTTHHHHHHHHT
T ss_pred HHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHc
Confidence 9999999999999 89999999999998874
No 4
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=1.8e-35 Score=233.02 Aligned_cols=106 Identities=28% Similarity=0.366 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 029135 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVL 129 (198)
Q Consensus 50 ~K~e~R~rR~rRiRkKI~GTa~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklL 129 (198)
+|++.|.+||+|+|+||+||+++|||+||+||+|||||||||++|+||+||||+|++++ + .+++|++||+ .||++|
T Consensus 6 ~~~~~r~~r~~R~r~ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~-~~~~n~~AA~-~vG~ll 81 (120)
T 1ovy_A 6 DRNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--L-DSTNNIEAAK-KVGELV 81 (120)
T ss_dssp ------------------CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--S-SCTTSHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--c-CCCCcHHHHH-HHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999986 3 4578999999 999999
Q ss_pred HHHHHhcChhHHH-----Hhhhheeehhhhhhhcc
Q 029135 130 VKSLSRLVLHLTL-----RKFHLMIVMAPVVVREC 159 (198)
Q Consensus 130 AerAkeaGI~~~v-----~kyHg~i~~~~~~~~~~ 159 (198)
|++|+++||++++ ++|||+|.-+++-.||.
T Consensus 82 A~Ral~~GI~~vvfDrgg~~yhgrV~ala~~are~ 116 (120)
T 1ovy_A 82 AKRALEKGIKQVVFDRGGYLYHGRVKALADAAREA 116 (120)
T ss_dssp HHHHHHHSSSCCCCCSTTCSSCSSTHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEecCCccccHHHHHHHHHHHHh
Confidence 9999999999998 89999999999988874
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.97 E-value=2.2e-33 Score=219.67 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhhcCC---CCCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHH
Q 029135 52 TESAKIRNRRIQKKFNGT---PTKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSV 128 (198)
Q Consensus 52 ~e~R~rR~rRiRkKI~GT---a~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGkl 128 (198)
+++|.+|++|+|+||+|| +++|||+||+||+|||||||||++|+||+||||+| + + +++|++||+ .||++
T Consensus 3 ~~~r~~r~~r~r~ki~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l-~----~~~n~~AA~-~vG~l 74 (114)
T 2zjr_L 3 TATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L-K----SGNKTDTAA-AVGKA 74 (114)
T ss_dssp -----CHHHHHHHHHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C-C----TTCSSSSHH-HHHHH
T ss_pred hHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h-c----CCCCHHHHH-HHHHH
Confidence 457789999999999999 99999999999999999999999999999999999 3 2 358999999 99999
Q ss_pred HHHHHHhcChhHHH-----Hhhhheeehhhhhhhcc
Q 029135 129 LVKSLSRLVLHLTL-----RKFHLMIVMAPVVVREC 159 (198)
Q Consensus 129 LAerAkeaGI~~~v-----~kyHg~i~~~~~~~~~~ 159 (198)
|||+|+++||++++ ++|||+|.-+++-.||.
T Consensus 75 lA~Ral~~GI~~vvfDrgg~~yhgrV~Ala~~are~ 110 (114)
T 2zjr_L 75 LAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREG 110 (114)
T ss_dssp HHHHHHTTCCCCCEECCCSSCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEecCCccccHHHHHHHHHHHHh
Confidence 99999999999998 89999999999988863
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=99.93 E-value=9.1e-27 Score=195.34 Aligned_cols=105 Identities=14% Similarity=0.036 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCeEEEEeccceEEEEEE--ecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHH
Q 029135 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLV--DDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLS 127 (198)
Q Consensus 50 ~K~e~R~rR~rRiRkKI~GTa~RPRLsVfRSNKHIYAQII--DD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGk 127 (198)
.|+|.++.+++|.|..+. ++|||+||+||+||||||| ||++|+||+||||+|++-.++. .+++|++||+ .||+
T Consensus 13 rrregkTdy~~R~rl~~~---~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k-~~~~N~~AA~-~vG~ 87 (187)
T 1vq8_N 13 RRREARTDYHQRLRLLKS---GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWE-APTGNMPSAY-LTGL 87 (187)
T ss_dssp HHHTTCCCHHHHHHHHTT---CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCC-SCSSSHHHHH-HHHH
T ss_pred chhccchhHHHHHHHHhc---CCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhccccc-cCCCcHHHHH-HHHH
Confidence 356677788999987774 7999999999999999999 9999999999999999932443 3578999999 9999
Q ss_pred HHHHHHHhcChhHHH-----Hhhh--heeehhhhhhhcc
Q 029135 128 VLVKSLSRLVLHLTL-----RKFH--LMIVMAPVVVREC 159 (198)
Q Consensus 128 lLAerAkeaGI~~~v-----~kyH--g~i~~~~~~~~~~ 159 (198)
+||+||+++||++++ ++|| |+|.-+++-.|+.
T Consensus 88 llA~Ral~kGI~~vvfDrgg~~yh~GgRV~Ala~gAre~ 126 (187)
T 1vq8_N 88 LAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDA 126 (187)
T ss_dssp HHHHHHHHTTCCBCEEECTTSCCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEcCCCceeccchHHHHHHHHhhcC
Confidence 999999999999998 9999 9999999999986
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.92 E-value=1e-26 Score=197.09 Aligned_cols=105 Identities=14% Similarity=0.036 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCeEEEEeccceEEEEEEe--cCCCeEEEEEechhhhh-cCCCCCCCCCHHHHHHHHH
Q 029135 50 ARTESAKIRNRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVD--DQNKKCLFFGSTLQQSI-RGNGNPPCSTIFPLSRKLL 126 (198)
Q Consensus 50 ~K~e~R~rR~rRiRkKI~GTa~RPRLsVfRSNKHIYAQIID--D~~gkTLaSASTlek~l-k~~l~~~~~NieAA~~~VG 126 (198)
.|++.+++|++|.|.++. ++|||+||+||+|||||||| |++|+||+||||+|+++ .+|. .+++|++||+ .||
T Consensus 13 rRregkt~y~~R~rl~~~---~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~-~~~~N~~AA~-~vG 87 (203)
T 3j21_O 13 RRREGKTNYRKRLKLLKS---GKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK-GHCGNTPSAY-LLG 87 (203)
T ss_dssp HHHHTCCCHHHHHHHHTT---CCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC-SCTTSHHHHH-HHH
T ss_pred hHHHHhHHHHHHHHHHhc---CCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc-CCCCcHHHHH-HHH
Confidence 466777889999998877 59999999999999999997 88899999999999985 4665 5678999999 999
Q ss_pred HHHHHHHHhcChhHHH-----Hhh--hheeehhhhhhhcc
Q 029135 127 SVLVKSLSRLVLHLTL-----RKF--HLMIVMAPVVVREC 159 (198)
Q Consensus 127 klLAerAkeaGI~~~v-----~ky--Hg~i~~~~~~~~~~ 159 (198)
++||+||+++||+.++ ++| ||+|.-+++-.|+.
T Consensus 88 ~llA~Ral~kGI~~vvfDrgg~~y~~hgRV~Ala~gAre~ 127 (203)
T 3j21_O 88 LLIGYKAKQAGIEEAILDIGLHPPVRGSSVFAVLKGAVDA 127 (203)
T ss_dssp HHSSSSTTSSCCCCCEEECCSSCCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCcceeccCcchhhhhhhcccC
Confidence 9999999999999998 788 89999999988875
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.82 E-value=4.2e-21 Score=170.33 Aligned_cols=107 Identities=9% Similarity=-0.052 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhhcCC----CCCCeEEEEeccceEEEEEEecC--CCeEEEEEechhhhhcCCCCCCCCCHHHHHHH
Q 029135 51 RTESAKIRNRRIQKKFNGT----PTKPRLSVFCSDKQLYAMLVDDQ--NKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRK 124 (198)
Q Consensus 51 K~e~R~rR~rRiRkKI~GT----a~RPRLsVfRSNKHIYAQIIDD~--~gkTLaSASTlek~lk~~l~~~~~NieAA~~~ 124 (198)
|.|.++.++.|.|.-+.+. ..+|||+||+||+|||||||||. +|+||+||||+|++-.++. ..++|.+||+ .
T Consensus 23 RReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k-~g~tN~aAAy-~ 100 (297)
T 2zkr_n 23 RREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVK-VGLTNYAAAY-C 100 (297)
T ss_dssp HHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCC-SCSSSHHHHH-H
T ss_pred hccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccc-cCCCcHHHHH-H
Confidence 3445566777877766653 25799999999999999999987 9999999999999844554 3568999999 9
Q ss_pred HHHHHHHHHHhc---------------------------ChhHHH-----Hhh--hheeehhhhhhhcc
Q 029135 125 LLSVLVKSLSRL---------------------------VLHLTL-----RKF--HLMIVMAPVVVREC 159 (198)
Q Consensus 125 VGklLAerAkea---------------------------GI~~~v-----~ky--Hg~i~~~~~~~~~~ 159 (198)
+|.+||+||+++ ||..++ +.| ||||.-+++-.|+-
T Consensus 101 tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVfa~akGArDg 169 (297)
T 2zkr_n 101 TGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDG 169 (297)
T ss_dssp HHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHHHHHHHHHhc
Confidence 999999999999 888777 899 99999998888874
No 9
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.80 E-value=3.8e-20 Score=164.51 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHhhhcCC----CCCCeEEEEeccceEEEEEEec--CCCeEEEEEechhhhhcCCCCCCCCCHHHHHHH
Q 029135 51 RTESAKIRNRRIQKKFNGT----PTKPRLSVFCSDKQLYAMLVDD--QNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRK 124 (198)
Q Consensus 51 K~e~R~rR~rRiRkKI~GT----a~RPRLsVfRSNKHIYAQIIDD--~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~ 124 (198)
|.|.++.+..|.|.-+.+. +.+|||+|||||+||||||||| ++|+||+||||+|++.++|. ..++|++||+ +
T Consensus 23 RReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k-~~~~N~~AAy-~ 100 (301)
T 4a17_M 23 RREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVS-TGLASYAAAY-A 100 (301)
T ss_dssp HHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCC-SCTTSHHHHH-H
T ss_pred cccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhcccc-CCCCcHHHHH-H
Confidence 3445566778877777652 3699999999999999999998 68899999999999987765 4678999999 9
Q ss_pred HHHHHHHHHHhc
Q 029135 125 LLSVLVKSLSRL 136 (198)
Q Consensus 125 VGklLAerAkea 136 (198)
||.+||+||+++
T Consensus 101 vG~LiAeRAl~k 112 (301)
T 4a17_M 101 TGLLLARRLLKQ 112 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999999
No 10
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.80 E-value=5e-20 Score=163.49 Aligned_cols=88 Identities=11% Similarity=0.010 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhhhcC----CCCCCeEEEEeccceEEEEEEec--CCCeEEEEEechhhhhcCCCCCCCCCHHHHHHH
Q 029135 51 RTESAKIRNRRIQKKFNG----TPTKPRLSVFCSDKQLYAMLVDD--QNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRK 124 (198)
Q Consensus 51 K~e~R~rR~rRiRkKI~G----Ta~RPRLsVfRSNKHIYAQIIDD--~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~ 124 (198)
|.|.++.+..|.|.-+.. -..+|||+|||||+||||||||| ++|+||+||||+|++.++|. ..++|++||+ +
T Consensus 23 RReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k-~~~~N~~AAy-~ 100 (297)
T 3u5e_D 23 RREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGIT-HGLTNWAAAY-A 100 (297)
T ss_dssp TTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCC-SCTTSHHHHH-H
T ss_pred hccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccC-CCCCcHHHHH-H
Confidence 456667777787766653 13699999999999999999998 79999999999999877765 4578999999 9
Q ss_pred HHHHHHHHHHhc--------ChhH
Q 029135 125 LLSVLVKSLSRL--------VLHL 140 (198)
Q Consensus 125 VGklLAerAkea--------GI~~ 140 (198)
||.+||+||+++ |+++
T Consensus 101 vG~LiAeRAl~k~~ld~~y~G~~e 124 (297)
T 3u5e_D 101 TGLLIARRTLQKLGLDETYKGVEE 124 (297)
T ss_dssp HHHHHHHHHHHHTSTTSSCCCCSS
T ss_pred HHHHHHHHHHHhhCCcccccCccc
Confidence 999999999999 7776
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.62 E-value=2.7e-16 Score=139.99 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHhhhcCC----CCCCeEEEEeccceEEEEEEec--CCCeEEEEEechhhhhcCCCCCCCCCHHHHHHH
Q 029135 51 RTESAKIRNRRIQKKFNGT----PTKPRLSVFCSDKQLYAMLVDD--QNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRK 124 (198)
Q Consensus 51 K~e~R~rR~rRiRkKI~GT----a~RPRLsVfRSNKHIYAQIIDD--~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~ 124 (198)
|.|.++.++.|.|.-+.+. ..||||+ ||+||||||||| ++++||++|||+|++.++|. ..++|++||+ +
T Consensus 27 RREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k-~g~~N~aAAy-~ 101 (304)
T 3iz5_Q 27 RRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLE-VGLTNYAAAY-C 101 (304)
T ss_dssp HHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCC-SCTTSHHHHH-H
T ss_pred cccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEecCchhhcccC-CCCCcHHHHH-H
Confidence 4445566778877777653 2589999 999999999998 57799999999999988875 4678999999 9
Q ss_pred HHHHHHHHHHhc--------ChhH
Q 029135 125 LLSVLVKSLSRL--------VLHL 140 (198)
Q Consensus 125 VGklLAerAkea--------GI~~ 140 (198)
||.+||+||+++ |+++
T Consensus 102 tGlLiA~RAl~k~~ld~~y~G~~e 125 (304)
T 3iz5_Q 102 TGLLLARRVLTLRGLDQEYEGNVE 125 (304)
T ss_dssp HHHHHHHHHHTTCSSCCCCCSSSC
T ss_pred HHHHHHHHHHHhhCCccccCCccc
Confidence 999999999999 8876
No 12
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=95.86 E-value=0.01 Score=47.65 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=55.2
Q ss_pred CCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHhcChhH
Q 029135 71 TKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKSLSRLVLHL 140 (198)
Q Consensus 71 ~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLAerAkeaGI~~ 140 (198)
..+.+-|+-|-+++.+.|-| .+|+++..+|+-...+++. ..++-.||. .+++.++++|++.||..
T Consensus 28 ~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~---rksTp~AA~-~aa~~~~~~a~e~Gi~~ 92 (140)
T 3bbn_K 28 PKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT---KRGTPFAAQ-TAAGNAIRTVVEQGMQR 92 (140)
T ss_dssp CCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT---SCSSHHHHH-HHHTSGGGTSTTTCCCE
T ss_pred eeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc---ccCCHHHHH-HHHHHHHHHHHHhCCeE
Confidence 57899999999999999987 6678899989877777763 357888999 99999999999999754
No 13
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=95.86 E-value=0.017 Score=45.62 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=54.9
Q ss_pred CCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHhcChhH
Q 029135 71 TKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKSLSRLVLHL 140 (198)
Q Consensus 71 ~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLAerAkeaGI~~ 140 (198)
..+.+-|+-|-++..+.|-| ..|+++..+|+-...+++. ..++-.||. .+++.++++|++.||..
T Consensus 15 ~~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~---rk~tp~AA~-~aa~~~~~~~~~~Gi~~ 79 (129)
T 2vqe_K 15 ASGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGS---RKGTPYAAQ-LAALDAAKKAMAYGMQS 79 (129)
T ss_dssp SEEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSG---GGGSHHHHH-HHHHHHHHHHHTTTCCE
T ss_pred cceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCC---CcCCHHHHH-HHHHHHHHHHHHhCCeE
Confidence 46899999999999999987 6678888889887777763 246788999 99999999999998754
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.22 E-value=0.077 Score=42.38 Aligned_cols=66 Identities=5% Similarity=-0.185 Sum_probs=54.3
Q ss_pred CCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHhcChhHH
Q 029135 72 KPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKSLSRLVLHLT 141 (198)
Q Consensus 72 RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLAerAkeaGI~~~ 141 (198)
...+-|+-|-++..+.|-|..+.++|+.+|.-...+++. ..++-.||. ..++.++++|++.||..+
T Consensus 14 ~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~---~ksTp~AA~-~aa~~~~~~a~e~Gi~~v 79 (137)
T 3j20_M 14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR---DEPSPYAAM-LAARRAAEEALEKGIVGV 79 (137)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT---TSSSHHHHH-HHHHHHHHHHHHHTEEEE
T ss_pred ceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC---ccCCHHHHH-HHHHHHHHHHHHcCCeEE
Confidence 567889999999999999877667999988877766652 246778888 999999999999987654
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=94.66 E-value=0.051 Score=42.14 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=51.6
Q ss_pred CeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHhcChhH
Q 029135 73 PRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKSLSRLVLHL 140 (198)
Q Consensus 73 PRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLAerAkeaGI~~ 140 (198)
-.+-|+-|-++..+.|-| .+|++++.+|+-...+++. ..++-.||. ..++.++++|++.||..
T Consensus 7 gi~hI~as~NNTivtiTD-~~G~~i~~~S~G~~gfKg~---rk~tp~AA~-~aa~~~~~~~~~~Gi~~ 69 (117)
T 3r8n_K 7 GVAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGS---RKSTPFAAQ-VAAERCADAVKEYGIKN 69 (117)
T ss_dssp EEEEEEECSSCEEEEEEC-TTSCCSEEEETGGGSCCGG---GGSSHHHHH-HHHHHHHHHHTTSCCCE
T ss_pred eEEEEEcccCCEEEEEEc-CCCCEEEEEcCCccccCCC---ccCCHHHHH-HHHHHHHHHHHHhCCcE
Confidence 357789999999999987 5566999999887777763 246788999 99999999999999754
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=91.83 E-value=0.2 Score=40.63 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHhcChhH
Q 029135 72 KPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKSLSRLVLHL 140 (198)
Q Consensus 72 RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLAerAkeaGI~~ 140 (198)
...+-|+-|-++..+.|-|..+..++..+|.- ..+++ +...++-.||. ..++.++++|++.||..
T Consensus 28 ~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg-~~~k~--~r~ksTpyAAq-~aa~~~a~~a~e~Gi~~ 92 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDLSGRETLVRVTGG-MKVKA--DREESSPYAAM-QAAIDVVNRCKELKINA 92 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECTTCCSEEEECCHH-HHCSS--GGGGSCHHHHH-HHHHHHHHHHHHHTCCE
T ss_pred eeEEEEEccCCCEEEEEECCCCCEEEEEecCc-ceEeC--CCCcCCHHHHH-HHHHHHHHHHHHcCCeE
Confidence 57899999999999999987766677665443 33332 11246778888 99999999999999854
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=89.50 E-value=0.27 Score=39.21 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=48.4
Q ss_pred CCCeEEEEeccceEEEEEEecCCCeEEEEEechhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHhcChhH
Q 029135 71 TKPRLSVFCSDKQLYAMLVDDQNKKCLFFGSTLQQSIRGNGNPPCSTIFPLSRKLLSVLVKSLSRLVLHL 140 (198)
Q Consensus 71 ~RPRLsVfRSNKHIYAQIIDD~~gkTLaSASTlek~lk~~l~~~~~NieAA~~~VGklLAerAkeaGI~~ 140 (198)
....+-||-|-++.++.|-|..+ +++...|+-...+++.- ..++--||. ..++.++++|++.||..
T Consensus 13 ~~gi~hI~asfNNTivtvTD~~G-~~~~~~ssG~~gfKg~r--~ksTpyAAq-~aa~~~a~~a~e~Gi~~ 78 (137)
T 3u5c_O 13 VFGVARIYASFNDTFVHVTDLSG-KETIARVTGGMKVKADR--DESSPYAAM-LAAQDVAAKCKEVGITA 78 (137)
T ss_dssp CEEECCEEEETTEEEECCEETTS-SSCCCCCBTTTTSCCST--TTTCHHHHH-HHHHHHHHHHHHHTCCE
T ss_pred eeEEEEEEccCCCEEEEEEcCCC-CEEEEEeCCCcEEeCCc--ccCCHHHHH-HHHHHHHHHHHHcCCeE
Confidence 35577799999999999998554 44444455544666521 136777888 99999999999999765
No 18
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=53.02 E-value=52 Score=25.11 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHHHHhhhcCCCCCCeEEEEeccceEEEEEEecCCCeEEE
Q 029135 59 NRRIQKKFNGTPTKPRLSVFCSDKQLYAMLVDDQNKKCLF 98 (198)
Q Consensus 59 ~rRiRkKI~GTa~RPRLsVfRSNKHIYAQIIDD~~gkTLa 98 (198)
-.++.+.+......-+..|......++++|||.++|++|=
T Consensus 44 v~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIR 83 (117)
T 2hc5_A 44 VGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIR 83 (117)
T ss_dssp HHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEE
Confidence 4456556665545669999999999999999999999983
No 19
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=43.59 E-value=4.9 Score=33.80 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred CchhhhhhhhccccccccCCCCCccccccCCccccccccchhhhhhhhcchHHHHHHHHHH
Q 029135 1 MSLTKAAAALQFNACDFFGTKAKPFNLLPSQTQRRSFILKPLVVEARANARTESAKIRNRR 61 (198)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~K~e~R~rR~rR 61 (198)
|+|.-+...|...+.+|||.++.++.+.+.+ .-...+|.-+.|+ .+++.|++++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--l~~~lr~k~~~r 59 (191)
T 3bbo_W 4 MVLQSSFTSLSLSSNSFLGQRLFPSPTTLQV---KTEGHSPCLIVMR--IKRWERKDCKPN 59 (191)
T ss_dssp -------------------------------------------------------------
T ss_pred hhhhhhhhccccccccccCcccCCCccccCc---ccccCCceeeEec--ccHHHHHHhCCC
Confidence 4566666677778889999998776652222 2233344444443 344455544433
No 20
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=22.59 E-value=22 Score=21.21 Aligned_cols=9 Identities=56% Similarity=1.055 Sum_probs=7.1
Q ss_pred hhhcccccc
Q 029135 155 VVRECKPLR 163 (198)
Q Consensus 155 ~~~~~~~~~ 163 (198)
+-|+|||++
T Consensus 12 ksR~CkP~~ 20 (26)
T 1r9i_A 12 RSRQCKPHR 20 (26)
T ss_dssp GSTTTTTSS
T ss_pred ccccccccc
Confidence 458999976
Done!