BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029136
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GAN|A Chain A, Complex Of Toad Ovary Galectin With N-Acetylgalactose
 pdb|1GAN|B Chain B, Complex Of Toad Ovary Galectin With N-Acetylgalactose
          Length = 134

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 40 HLQEEHCFEMKNAVCPLC---AANLGKDAAEHFM 70
          +L+  HC E+K ++ P C   A NLG+DA+   +
Sbjct: 11 NLKPGHCVEIKGSIPPDCKGFAVNLGEDASNFLL 44


>pdb|1A78|A Chain A, Complex Of Toad Ovary Galectin With Thio-Digalactose
 pdb|1A78|B Chain B, Complex Of Toad Ovary Galectin With Thio-Digalactose
          Length = 134

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 40 HLQEEHCFEMKNAVCPLC---AANLGKDAAEHFM 70
          +L+  HC E+K ++ P C   A NLG+DA+   +
Sbjct: 11 NLKPGHCVEIKGSIPPDCKGFAVNLGEDASNFLL 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,830,510
Number of Sequences: 62578
Number of extensions: 222609
Number of successful extensions: 350
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 5
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)