BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029136
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp.
japonica GN=DI19-6 PE=2 SV=1
Length = 208
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Query: 6 NHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA 65
N + E DD+ PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL KD
Sbjct: 20 NFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDT 79
Query: 66 AEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLPDPLL 123
EHF VQH+ LKRR+ S + +A G E S+ +P+ G AP+S PDPLL
Sbjct: 80 DEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSPDPLL 139
Query: 124 SPFLC 128
S F+C
Sbjct: 140 SQFIC 144
>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp.
japonica GN=DI19-5 PE=2 SV=1
Length = 202
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 23 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 82
FPCPFCY+E+E IC+HLQEEHCF+ +NAVCPLCA N+G+D HF VQH+ LKRR+
Sbjct: 37 FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96
Query: 83 CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAP--ESLPDPLLSPFLCSGTLSDTKG 137
S S F G P + N + PDPLLS F+CS +DT
Sbjct: 97 SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNS 150
>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1
PE=1 SV=2
Length = 206
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 11 DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
+E + DDD + F CPFC + +C H+ +EH E KNAVCP+C+ +G D H
Sbjct: 23 EEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHIT 82
Query: 71 VQHAS--SLKRRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLL 123
+ H S L+R+RK KSG N ++L KE L LG + A PDPLL
Sbjct: 83 LHHGSLFKLQRKRKSRKSGT-NSTLSLLRKELREGDLQRLLGFTSRNGSVASSVTPDPLL 141
Query: 124 SPFL 127
S F+
Sbjct: 142 SSFI 145
>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica
GN=DI19-1 PE=2 SV=1
Length = 226
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 1 MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN 60
+ HAD + +E ++D++V+ F CP+CY + + +C+HL+EEH FE A CP+C+
Sbjct: 21 LGHADRAGM-EEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDK 79
Query: 61 LGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSA--MLGKELSS-----FLGSPTIVRGN 113
+ KD H VQH K RR+ L+ + G A +L ++L LG N
Sbjct: 80 IAKDMLNHITVQHGYLFKNRRR-LRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNN 138
Query: 114 APESL---PDPLLSPFLCSGTLSDTKGIQK 140
+ + DPLLS F S SDT+ K
Sbjct: 139 SSNTTNISADPLLSSFGLSFPTSDTEETSK 168
>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp.
japonica GN=DI19-2 PE=2 SV=2
Length = 233
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 24/144 (16%)
Query: 22 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLK--R 79
+ CPFC + + C H+ +EH E K+ VCP+CA +G D H +QH S K R
Sbjct: 53 AYNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQR 112
Query: 80 RRKCLK-------------SGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPF 126
RR+ K LR+G L SFLG + V N P + PDP LS
Sbjct: 113 RRRVRKISSGSHSLLSLLRKDLRDG-------SLQSFLGGSSYV-SNPPAAAPDPFLSSL 164
Query: 127 LCSGTLSD-TKGIQKDDCTNKFSL 149
+CS +++ +K + D N F L
Sbjct: 165 ICSLPVAEPSKDLHSDSSDNNFLL 188
>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana
GN=DI19-7 PE=1 SV=2
Length = 211
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 12 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 71
+ E +DD+KA F CPFC E + +C H+ H E KN VCP+C +G D H
Sbjct: 32 DVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITT 91
Query: 72 QHASSLK-RRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSP 125
QH + K +RR+ L+ G + L KE L S GS T + + +S DPLLS
Sbjct: 92 QHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQSLGGSSTFIPSSNIDS--DPLLSS 149
Query: 126 FL 127
F+
Sbjct: 150 FM 151
>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana
GN=DI19-6 PE=1 SV=1
Length = 222
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 1 MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN 60
+ +DN +E E +DD + + CPFC + +C H+ E+H + KN VCP+CA
Sbjct: 22 LSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVK 81
Query: 61 LGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML---------GKELSSFLGSPTIVR 111
+ D H +QHA+ K RK + R G +ML G S F G+ V
Sbjct: 82 VSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVS 139
Query: 112 GNAPESLPDPLLSPFL 127
++ DPLLS F+
Sbjct: 140 SSSASIAADPLLSSFI 155
>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp.
japonica GN=DI19-4 PE=2 SV=1
Length = 245
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 11 DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
D+ E +D+V+ FPCP+CY + + +C+HL++EH FE K CP+C+A + KD +H
Sbjct: 48 DDVEPEDEVRPDFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHIT 107
Query: 71 VQHA 74
+QH+
Sbjct: 108 LQHS 111
>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana
GN=DI19-4 PE=1 SV=1
Length = 224
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 11 DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
++ E +DD+KA F CPFC + + +C H+ EEH E KN VCP+C +G D H
Sbjct: 35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94
Query: 71 VQHASSLK 78
QHA+ K
Sbjct: 95 TQHANFFK 102
>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana
GN=DI19-3 PE=1 SV=1
Length = 223
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 11 DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
+E + +++ + F CPFC + +C H+ E+H E KN VCP+CA +G D H
Sbjct: 32 EEIDGEEEFREEFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHIT 91
Query: 71 VQHASSLKRRRKCLKSGLRNGGS----AMLGKEL------SSFLGSPTIVRGNAPESL-P 119
+QHA+ K R K R GGS ++L +E S F GS IV ++ ++
Sbjct: 92 LQHANIFKMHR---KRKPRRGGSYSTLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAA 148
Query: 120 DPLLSPFL 127
DPLLS F+
Sbjct: 149 DPLLSSFI 156
>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana
GN=DI19-5 PE=1 SV=2
Length = 214
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 12 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 71
E E DD++ +PCPFC + + +C H+ EEH + N +CP+C+ + +H
Sbjct: 32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91
Query: 72 QHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGT 131
QH KR K + G+ K L S + P + + +S+ DPLLS +
Sbjct: 92 QHRDVFKRLYKDESYSAFSPGTR---KYLQSLIDEP-LSTNHTSKSVLDPLLSFIYNPPS 147
Query: 132 LSDTKGIQKD 141
+K +Q D
Sbjct: 148 PKKSKLVQPD 157
>sp|Q8GWK1|DI192_ARATH Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabidopsis thaliana
GN=DI19-2 PE=1 SV=1
Length = 221
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 14 EIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQH 73
E+DDD+ +PCPFC + + +C H+ EEH E N +CP+C+ + +H H
Sbjct: 38 EVDDDIAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHH 97
Query: 74 ASSLKRRRK 82
LK +K
Sbjct: 98 RDVLKSEQK 106
>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp.
japonica GN=DI19-3 PE=2 SV=1
Length = 246
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 21 ACFP---CPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSL 77
A +P CP+CY + + +C+HL+E+H +E + CP+C + +D H +QH
Sbjct: 57 ATWPDVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLF 116
Query: 78 KRRRKCLKSGLRNGGSAML------GKELSSFLGSPTIVR---GNAPESLPDPLLSPF 126
K R+ + + + L +L + LG R A DPLLS F
Sbjct: 117 KSGRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSF 174
>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 26 PFCYLEIEAHMICSHL-QEEHCFEMKNAVCPLCAANLGK--------DAAEHFMVQHASS 76
P+C+ EI+ + + Q +H M + P A +L K D+ F+ QHA S
Sbjct: 48 PYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGS 107
Query: 77 LKRRRKCLKSGLRNGGSAMLGKELSS 102
LK K +SGL N G + ++LSS
Sbjct: 108 LK-TLKVPRSGLTNSGVVNVAEKLSS 132
>sp|Q03Y25|GLYA_LEUMM Serine hydroxymethyltransferase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=glyA PE=3
SV=1
Length = 410
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 93 SAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSG-----TLSDTKGIQKDDCTN 145
+A+ GK+ L + +I E+LP+ LSPF+ SG T+G +DD TN
Sbjct: 320 TALNGKQTQELLDTVSITTNK--EALPNEQLSPFVTSGIRIGTAAITTRGFDEDDATN 375
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%)
Query: 25 CPFC-YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKC 83
CP+C +L E+ + +H +H + K CPLC L A HF + H ++ +C
Sbjct: 982 CPYCSFLSPESSQVRAHTLSQHAVQPKYR-CPLCQEQLVGRPALHFHLSHLHNVV--PEC 1038
Query: 84 LKSGLRNGGSAML-----------------GKELSSFLGSPTIVRGNA-------PESLP 119
++ L + + G+E + PT R A PE+ P
Sbjct: 1039 VEKLLLVATTVEMTFTTKVLSAPTLSPLDNGQEPPTHGPEPTPSRDQAAEGPNLTPEASP 1098
Query: 120 DPLLSPFLCSGTLSD 134
DPL P L S + D
Sbjct: 1099 DPLPEPPLASVEVPD 1113
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 9 IVDETEIDDDVKACFPCPFCYLEIEAH-----MICSHLQEEHC---FEMKNAVCPLCAAN 60
I+ + D VK CP C LE E M C HL C + K CPLC
Sbjct: 67 IISPEQADKGVK----CPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLE 122
Query: 61 LGKDAAEHFMVQHASSLKRRRK 82
L D A++ + +R+R+
Sbjct: 123 LPTDNADYEEFKKDKERRRQRE 144
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 23 FPCPFC----YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA-------AEHFMV 71
F CP+C Y E + H+ EH +CP+CAA G D A H +
Sbjct: 78 FTCPYCGKMGYTETS---LQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTL 134
Query: 72 QH--------ASSLKRRRKCLKSGLRNGG 92
+H +S ++ R+ G GG
Sbjct: 135 EHRAPRDLDESSGVRHVRRMFHPGRGLGG 163
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 23 FPCPFC----YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA-------AEHFMV 71
F CP+C Y E + H+ EH +CP+CAA G D A H +
Sbjct: 78 FTCPYCGKMGYTETS---LQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTL 134
Query: 72 QH--------ASSLKRRRKCLKSGLRNGG 92
+H +S ++ R+ G GG
Sbjct: 135 EHRAPRDLDESSGVRHVRRMFHPGRGLGG 163
>sp|Q09826|SDS23_SCHPO Protein sds23/moc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sds23 PE=1 SV=1
Length = 408
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 59 ANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVR--GNAPE 116
A LGK+ + + H +SL R + L SG+R ELS +I+R N
Sbjct: 136 AKLGKNKDDFITIPHTTSLGRLAEILSSGIRRVAVTNEQGELSFMASQRSIIRFLWNNIR 195
Query: 117 SLPD--PLLS 124
+ PD PL+S
Sbjct: 196 AFPDLEPLMS 205
>sp|Q03EK4|GLYA_PEDPA Serine hydroxymethyltransferase OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=glyA PE=3 SV=1
Length = 410
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 92 GSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGT-----LSDTKGIQKDDC 143
G+ + GKE+ + L I E++P+ LSPF SG T+G ++DDC
Sbjct: 319 GTQLNGKEVQNLLDGVFITTNK--EAIPEEKLSPFKTSGIRIGTPAITTRGFKEDDC 373
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 23 FPCPFC----YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA-------AEHFMV 71
F CP+C Y E + H+ EH +CP+CAA G D A H +
Sbjct: 78 FTCPYCGKMGYTETS---LQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTL 134
Query: 72 QH--------ASSLKRRRKCLKSGLRNGG 92
+H +S ++ R+ G GG
Sbjct: 135 EHRAPRDLDESSGVRHVRRMFHPGRGLGG 163
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 23 FPCPFC----YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA-------AEHFMV 71
F CP+C Y E + H+ EH +CP+CAA G D A H +
Sbjct: 78 FTCPYCGKMGYTETS---LQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTL 134
Query: 72 QH--------ASSLKRRRKCLKSGLRNGG 92
+H +S ++ R+ G GG
Sbjct: 135 EHRAPRDLDESSGVRHVRRMFHPGRGLGG 163
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 19 VKACFPCPFCYLEIEA-----HMICSHLQEEHC---FEMKNAVCPLCAANLGKDAAEHFM 70
KA CP C LE EA M C HL +C + K CPLC L D +
Sbjct: 82 AKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSY-- 139
Query: 71 VQHASSLKRRRKCLKSGLRNGGSAM 95
+ K RR+ + L N AM
Sbjct: 140 -EEHKKDKARRQQQQHRLENLHGAM 163
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 23 FPCPFC----YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA-------AEHFMV 71
F CP+C Y E + H+ EH +CP+CAA G D A H +
Sbjct: 78 FTCPYCGKMGYTETS---LQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTL 134
Query: 72 QH--------ASSLKRRRKCLKSGLRNGG 92
+H +S ++ R+ G GG
Sbjct: 135 EHRAPRDLDESSGVRHVRRMFHPGRGLGG 163
>sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2
PE=1 SV=2
Length = 870
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 20/124 (16%)
Query: 39 SHLQEE--HCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML 96
SHL + C ++N + + NL + + + ++ + L N GS +
Sbjct: 79 SHLDLKVWSCHTLRNELLGTASVNL-----SNVLKNNGGKMENMQLTLNLQTENKGSVVS 133
Query: 97 GKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRY 156
G EL+ FL PT+ GN P L+D + D + ++A + +
Sbjct: 134 GGELTIFLDGPTVDLGNVPN------------GSALTDGSQLPSRDSSGT-AVAPENRHQ 180
Query: 157 PPSS 160
PPS+
Sbjct: 181 PPST 184
>sp|P35519|NEU1_ANSAN Neurophysin 1 OS=Anser anser anser PE=1 SV=1
Length = 93
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 81 RKCLKSGLRNGGSAM-----LGKELSSFLGSPTIVRGNAPESLPDPLLS 124
RKCL G RN G G+EL +LG+P +R LP P S
Sbjct: 8 RKCLPCGPRNRGRCFGPRICCGEELGCYLGTPETLRCQEESFLPTPCES 56
>sp|O76924|ARI2_DROME Protein ariadne-2 OS=Drosophila melanogaster GN=ari-2 PE=2 SV=1
Length = 509
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 25 CPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF 69
CP C++ IE + C+H+Q CF K+ C +C + +E++
Sbjct: 311 CPKCHICIEKNGGCNHMQ---CFNCKHDFCWMCLGDWKTHGSEYY 352
>sp|O46503|ST1C2_RABIT Sulfotransferase 1C2 OS=Oryctolagus cuniculus GN=SULT1C2 PE=1 SV=1
Length = 296
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 106 SPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLAS 151
+P I R P+S+ D +SPF+ GT+ D K N F++A
Sbjct: 236 NPMINRSTVPKSIMDQSISPFMRKGTVGDWK--------NHFTVAQ 273
>sp|Q9JIT1|RNF32_MOUSE RING finger protein 32 OS=Mus musculus GN=Rnf32 PE=2 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 24 PCPFCYLEIEAH----MICSHLQEEHCFE-----MKNAVCPLCAANLGK-----DAAEHF 69
PCP C E E H + CSH+ C + CPLC N + D A F
Sbjct: 128 PCPICKEEFELHPQVLLSCSHVFHRACLQAFEKFTNKKTCPLCRKNQYQTRVIHDGARLF 187
Query: 70 MVQHASSLK 78
V+ A+ ++
Sbjct: 188 RVKCATRIQ 196
>sp|Q9ET26|RN114_MOUSE RING finger protein 114 OS=Mus musculus GN=Rnf114 PE=2 SV=2
Length = 229
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 23 FPCPFC-YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAA-------EHFMVQH 73
FPCP+C + + H + H + K+ VCP+CA+ D + EH +H
Sbjct: 142 FPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICASMPWGDPSYRSANFMEHIQRRH 200
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 23 FPCPFC-YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAA-------EHFMVQH 73
FPCP+C + + H + H + K+ VCP+CA+ D + EH +H
Sbjct: 142 FPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICASMPWGDPSYRSANFMEHIQRRH 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,641,427
Number of Sequences: 539616
Number of extensions: 2969583
Number of successful extensions: 6400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 6354
Number of HSP's gapped (non-prelim): 75
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)