Query 029138
Match_columns 198
No_of_seqs 154 out of 632
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z9l_A Vesicle-associated memb 100.0 7.7E-31 2.6E-35 204.6 15.3 110 73-188 7-116 (128)
2 2cri_A Vesicle-associated memb 100.0 5.2E-31 1.8E-35 210.7 14.5 110 73-188 11-120 (147)
3 1wic_A Hypothetical protein ri 100.0 1.8E-29 6.1E-34 203.4 12.2 110 73-191 15-128 (152)
4 1msp_A MSP, major sperm protei 100.0 6.7E-29 2.3E-33 194.2 14.4 106 74-185 6-113 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 2.4E-27 8.2E-32 182.0 11.9 96 77-187 3-98 (109)
6 1m1s_A WR4; structural genomic 99.9 6E-26 2E-30 176.4 13.4 97 75-186 9-105 (116)
7 2ys4_A Hydrocephalus-inducing 98.2 5.2E-06 1.8E-10 62.9 8.7 65 75-143 24-89 (122)
8 3qbt_B Inositol polyphosphate 98.0 5.1E-05 1.7E-09 59.5 9.7 68 75-143 25-99 (140)
9 2e6j_A Hydin protein; PAPD, st 97.9 3.2E-05 1.1E-09 56.8 7.4 68 75-143 8-79 (112)
10 3qis_A Inositol polyphosphate 97.5 0.00091 3.1E-08 59.7 12.0 69 75-144 28-103 (366)
11 2qsv_A Uncharacterized protein 96.5 0.012 4.3E-07 48.4 9.1 66 76-143 2-68 (220)
12 2qsv_A Uncharacterized protein 95.2 0.091 3.1E-06 43.2 8.8 67 74-143 117-184 (220)
13 3q48_A Chaperone CUPB2; IG fol 91.0 2 6.9E-05 36.5 10.6 64 76-143 29-102 (257)
14 2xg5_A PAPD, chaperone protein 90.3 2.3 7.8E-05 35.2 10.1 64 77-144 2-73 (218)
15 2co7_B SAFB chaperone, putativ 90.3 2 6.8E-05 35.6 9.7 64 76-143 13-81 (221)
16 1klf_A FIMC chaperone, chapero 87.3 3.4 0.00012 33.8 9.0 63 77-143 2-71 (205)
17 4djm_A DRAB; chaperone, PILI; 86.1 8.7 0.0003 32.2 11.1 64 76-143 23-91 (239)
18 4ay0_A Chaperone protein CAF1M 85.7 6.3 0.00022 32.6 9.9 64 76-143 13-83 (218)
19 1l4i_A SFAE protein; periplasm 83.9 5.1 0.00017 32.7 8.5 63 77-143 2-71 (206)
20 1yew_A Particulate methane mon 81.0 11 0.00036 34.2 9.9 68 73-143 246-335 (382)
21 3gfu_C Chaperone protein FAEE; 78.4 15 0.0005 30.6 9.5 63 77-143 2-71 (224)
22 3rfr_A PMOB; membrane, oxidore 77.1 7.6 0.00026 35.5 7.8 66 74-143 281-367 (419)
23 3jt0_A Lamin-B1; structural ge 74.7 8.5 0.00029 30.1 6.6 41 98-138 39-84 (144)
24 2r39_A FIXG-related protein; s 72.2 15 0.00052 26.9 7.3 60 84-143 21-82 (118)
25 3idu_A Uncharacterized protein 54.8 65 0.0022 24.2 8.4 53 90-143 30-83 (127)
26 3hs8_A Adaptor protein complex 48.5 44 0.0015 28.4 6.8 57 92-148 67-130 (273)
27 2lll_A Lamin-B2; immunoglobuli 45.1 50 0.0017 25.5 6.1 41 98-138 35-81 (139)
28 2huh_A Putative DNA mismatch r 40.5 68 0.0023 25.2 6.2 66 97-174 30-95 (147)
29 3zy7_A AP-1 complex subunit ga 40.3 30 0.001 25.8 4.0 48 68-115 51-98 (122)
30 2xzz_A Protein-glutamine gamma 38.8 1E+02 0.0036 22.2 6.7 49 91-143 18-72 (102)
31 4hci_A Cupredoxin 1; structura 38.4 73 0.0025 21.9 5.6 53 78-143 24-76 (100)
32 3e38_A Two-domain protein cont 35.9 1.1E+02 0.0039 26.5 7.6 66 97-174 270-335 (343)
33 3hn9_A Lamin-B1; structural ge 35.7 54 0.0018 24.6 4.8 40 98-138 26-71 (123)
34 3isy_A Bsupi, intracellular pr 35.3 1.4E+02 0.0048 22.4 7.2 53 91-143 16-87 (120)
35 3zy7_A AP-1 complex subunit ga 35.3 1.3E+02 0.0046 22.1 9.9 79 94-181 30-121 (122)
36 2g30_A AP-2 complex subunit be 35.1 78 0.0027 26.6 6.2 64 74-143 41-110 (258)
37 1so9_A Cytochrome C oxidase as 34.7 1.7E+02 0.0059 23.2 8.0 71 92-171 61-146 (164)
38 1gyu_A Adapter-related protein 30.0 54 0.0018 25.1 4.0 48 68-115 69-116 (140)
39 4gio_A Putative lipoprotein; u 29.3 1.7E+02 0.0057 21.3 6.5 51 92-142 35-91 (107)
40 1c7s_A Beta-N-acetylhexosamini 29.0 79 0.0027 31.3 5.9 33 111-143 76-110 (858)
41 3mnm_A ADP-ribosylation factor 28.6 1.8E+02 0.0061 21.5 8.2 42 92-133 30-75 (123)
42 3o0l_A Uncharacterized protein 28.5 1.2E+02 0.0041 22.2 5.6 52 91-142 36-94 (112)
43 2e9g_A AP-1 complex subunit ga 27.1 48 0.0017 24.9 3.2 48 68-115 60-107 (131)
44 3vta_A Cucumisin; subtilisin-l 25.3 2.5E+02 0.0084 26.1 8.4 49 95-143 539-590 (621)
45 3mnm_A ADP-ribosylation factor 24.3 1.3E+02 0.0044 22.4 5.1 48 68-115 53-103 (123)
46 2aan_A Auracyanin A; cupredoxi 24.2 2.1E+02 0.007 20.7 6.4 62 76-142 29-113 (139)
47 1cuo_A Protein (azurin ISO-2); 23.3 60 0.0021 24.3 3.1 62 76-142 12-99 (129)
48 1ifr_A Lamin A/C; immunoglobul 23.3 1.5E+02 0.005 22.1 5.3 43 98-142 20-68 (121)
49 1qhq_A Protein (auracyanin); e 22.8 53 0.0018 24.1 2.7 63 76-143 27-113 (140)
50 1klf_A FIMC chaperone, chapero 22.8 1.6E+02 0.0056 23.5 5.9 48 84-140 130-177 (205)
51 1iu1_A Gamma1-adaptin; coated 22.7 70 0.0024 24.5 3.5 48 68-115 75-122 (146)
52 3ndz_E Endoglucanase D; cellot 21.6 2E+02 0.0069 20.8 5.6 49 95-143 17-86 (107)
53 2iaa_C Azurin; quinoprotein, t 21.1 82 0.0028 23.5 3.5 63 76-142 11-98 (128)
54 2vhk_A Thaumatin-I; kinetics o 21.0 88 0.003 25.8 3.9 39 98-140 2-41 (206)
55 1wm3_A Ubiquitin-like protein 20.2 92 0.0032 20.4 3.2 21 98-118 3-23 (72)
56 1iby_A Nitrosocyanin; RED copp 20.2 2.2E+02 0.0076 19.6 7.3 52 79-143 35-86 (112)
57 3la7_A Global nitrogen regulat 20.1 76 0.0026 24.8 3.2 27 61-88 27-56 (243)
No 1
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.97 E-value=7.7e-31 Score=204.58 Aligned_cols=110 Identities=28% Similarity=0.425 Sum_probs=98.8
Q ss_pred CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCC
Q 029138 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (198)
Q Consensus 73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~ 152 (198)
.+++|.|+|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+++ |+..
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~---~~~~-- 81 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ---PFDY-- 81 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC---CCCC--
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC---cCcC--
Confidence 46789999988999999999999999999999999999999999999999999999999999999999997 4432
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCcE
Q 029138 153 QPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFA 188 (198)
Q Consensus 153 ~p~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~v 188 (198)
.++.+++|||+||++.++++.+...++|++.++..
T Consensus 82 -~p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~ 116 (128)
T 1z9l_A 82 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE 116 (128)
T ss_dssp -CTTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGG
T ss_pred -CcccccCCEEEEEEEECCCCcchHHHHhhcCCCCc
Confidence 23468999999999999988766799999887654
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=5.2e-31 Score=210.67 Aligned_cols=110 Identities=27% Similarity=0.424 Sum_probs=98.8
Q ss_pred CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCC
Q 029138 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (198)
Q Consensus 73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~ 152 (198)
.+++|.|+|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+ |+..
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~---~~~~-- 85 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ---PFDY-- 85 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEEC---CCCC--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEEC---CCcC--
Confidence 56789999988999999999999999999999999999999999999999999999999999999999997 4432
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCcE
Q 029138 153 QPLDQKSKDKFKIMSLKVKGGIDYVPELVSHIGPFA 188 (198)
Q Consensus 153 ~p~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~v 188 (198)
+++++++|||+||++.++++.+...++|++.++.+
T Consensus 86 -~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~ 120 (147)
T 2cri_A 86 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE 120 (147)
T ss_dssp -CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTT
T ss_pred -CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCc
Confidence 23468999999999999988766799999876543
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.96 E-value=1.8e-29 Score=203.37 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=95.8
Q ss_pred CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCC
Q 029138 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (198)
Q Consensus 73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~ 152 (198)
.+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+|+ ++ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq---~~-~-- 88 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-L-- 88 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-S--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEec---Cc-c--
Confidence 46789999998999999999999999999999999999999999999999999999999999999999997 33 1
Q ss_pred CCCCCCCCCeEEEEEEEeC--CCC--CchhhhhhccCCcEEEE
Q 029138 153 QPLDQKSKDKFKIMSLKVK--GGI--DYVPELVSHIGPFAKYF 191 (198)
Q Consensus 153 ~p~~~~~kDKFlVqs~~v~--~~~--d~~~elfk~~k~~v~~~ 191 (198)
+.+++|||+||++.++ ++. +.+.++|++..+...+.
T Consensus 89 ---~~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e 128 (152)
T 1wic_A 89 ---TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128 (152)
T ss_dssp ---CCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEE
T ss_pred ---cCCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEE
Confidence 1378999999999998 443 34689999876544333
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=6.7e-29 Score=194.20 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=92.6
Q ss_pred CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCC
Q 029138 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ 153 (198)
Q Consensus 74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~ 153 (198)
...|.++|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|+ ++..+
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q---~~~~~-- 80 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCD---TFNAA-- 80 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEEC---CCCGG--
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEec---CCCCC--
Confidence 4579999999999999999999999999999999999999999999999999999999999999999997 44332
Q ss_pred CCCCCCCCeEEEEEEEeCCCC--CchhhhhhccC
Q 029138 154 PLDQKSKDKFKIMSLKVKGGI--DYVPELVSHIG 185 (198)
Q Consensus 154 p~~~~~kDKFlVqs~~v~~~~--d~~~elfk~~k 185 (198)
+. ...+|||+||++.++++. |+.++||..+.
T Consensus 81 ~~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~d~ 113 (126)
T 1msp_A 81 TE-DLNNDRITIEWTNTPDGAAKQFRREWFQGDG 113 (126)
T ss_dssp GS-CCSSCEEEEEEEECCTTCCSSCCTHHHHSSS
T ss_pred CC-ccCCCEEEEEEEECCCCcchhhhHHhhcCCC
Confidence 22 245999999999999886 68777776543
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=2.4e-27 Score=182.03 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=85.9
Q ss_pred EEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 029138 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156 (198)
Q Consensus 77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~ 156 (198)
|.|+|. +|.|.++.+ .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+++ |+
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q---~~-------- 67 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG-------- 67 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeC---CC--------
Confidence 789998 699998743 599999999999999999999999999999999999999999999997 32
Q ss_pred CCCCCeEEEEEEEeCCCCCchhhhhhccCCc
Q 029138 157 QKSKDKFKIMSLKVKGGIDYVPELVSHIGPF 187 (198)
Q Consensus 157 ~~~kDKFlVqs~~v~~~~d~~~elfk~~k~~ 187 (198)
..++|||+||++.++++...++++|++.++.
T Consensus 68 ~~~~dKflvq~~~~~~~~~d~~~~fk~~~~~ 98 (109)
T 1row_A 68 APKEDKLVVHFASAPADATDAQAAFVAVAPA 98 (109)
T ss_dssp CCEEEEEEEEEEECCTTCSCHHHHHTTCCCC
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHhhcCCCC
Confidence 2479999999999998876679999997654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=6e-26 Score=176.38 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=86.1
Q ss_pred CcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCC
Q 029138 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQP 154 (198)
Q Consensus 75 ~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p 154 (198)
..+.++|. +|.|+.+.| .+.|+|+|+++++||||||||+|++|+|||+.|+|+||++++|.|+++ |+ +
T Consensus 9 ~~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q---~~-----~ 76 (116)
T 1m1s_A 9 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG-----P 76 (116)
T ss_dssp CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC-----C
T ss_pred eeeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeC---CC-----C
Confidence 35889996 999997643 699999999999999999999999999999999999999999999997 32 1
Q ss_pred CCCCCCCeEEEEEEEeCCCCCchhhhhhccCC
Q 029138 155 LDQKSKDKFKIMSLKVKGGIDYVPELVSHIGP 186 (198)
Q Consensus 155 ~~~~~kDKFlVqs~~v~~~~d~~~elfk~~k~ 186 (198)
.++|||+||++.++++...++++|++.++
T Consensus 77 ---~k~DKflVq~~~~~~d~~d~~~~fk~~~~ 105 (116)
T 1m1s_A 77 ---PKEDKIVIQYAEVPAEETDPMAPFKAGAQ 105 (116)
T ss_dssp ---SCEEEEEEEEEEECTTCCCTTHHHHTTCC
T ss_pred ---CCCCEEEEEEEECCCCCCCHHHHHhcCCC
Confidence 46899999999999876556999999765
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=5.2e-06 Score=62.93 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=55.3
Q ss_pred CcEEEcCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 75 ~~L~v~P~~~L~F~~~-~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
-.|.+ | +.|.|..- .+......|.|+|.++.++.|++++. .-|.|.|..|.|.||+++.|.|+..
T Consensus 24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~ 89 (122)
T 2ys4_A 24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFE 89 (122)
T ss_dssp CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEEC
T ss_pred cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEE
Confidence 33444 6 48888763 46777899999999999999999974 4799999999999999999999996
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.95 E-value=5.1e-05 Score=59.48 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=58.1
Q ss_pred CcEEEcCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeC------CCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 75 ~~L~v~P~~~L~F~~-~~~k~v~s~LtL~N~S~~~VAFKVKTT------aP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
..+.+++. +|.|-. .+++..+..|+|+|++.-+.-|++.-. .+..+.|.|..|.|.||+++.|.|++.
T Consensus 25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 45777875 999974 467778899999999999999999853 345699999999999999999999996
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=3.2e-05 Score=56.83 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=57.1
Q ss_pred CcEEEcCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCC---CcEEecCCceeeCCCCeEEEEEEee
Q 029138 75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 75 ~~L~v~P~~~L~F~~~-~~k~v~s~LtL~N~S~~~VAFKVKTTaP---~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
..+.+++. .|.|-.- .+...+..++|+|+++-++.|++..... ..|.+.|..|.|+||++..|.|++.
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~ 79 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS 79 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence 45888885 7888653 5777889999999999999999964221 4599999999999999999999996
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.52 E-value=0.00091 Score=59.71 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=58.3
Q ss_pred CcEEEcCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCC------CCcEEecCCceeeCCCCeEEEEEEeee
Q 029138 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTA------PKSCYMRPPGGVLAPGDSIIATVFKFV 144 (198)
Q Consensus 75 ~~L~v~P~~~L~F~~-~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P~~Y~VrP~~GiL~Pgesi~I~Vtl~~ 144 (198)
..+.|++. +|.|.- .++...+..|+|+|++.-++.|++.... +..++|.|..|.|.||+++.|.|++..
T Consensus 28 P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 28 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 45778885 999964 5788889999999999999999997542 344889999999999999999999973
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.53 E-value=0.012 Score=48.41 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred cEEEcCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 76 RLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~-~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
.|+++|. .|.|..- .|+.....++++|+++.++-++.... |....+++..+.|+||++..|.|++.
T Consensus 2 ~i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~ 68 (220)
T 2qsv_A 2 PLQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLA 68 (220)
T ss_dssp CEEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred ceEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEc
Confidence 3889995 9999863 45666679999999999999987543 88889999999999999999999996
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.22 E-value=0.091 Score=43.16 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEE-EEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAF-KVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
...|.++ . .+.|-.-.|+..+..++|+|+++.++.+ +|+++. +-..+.+..+.|+||++..|.|++.
T Consensus 117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEEC
T ss_pred CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEe
Confidence 3468888 4 8888743377888999999999999888 788765 6888899999999999999999996
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=90.99 E-value=2 Score=36.46 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=47.7
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C----CcEEecCCceeeCCCCeEEEEEEee
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa------P----~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
-|.|+|. .+.|+.. .+ ...|+|+|.++.++.-.+-... | .-|.|.|+.-.|+||+...|.|...
T Consensus 29 ~v~i~~T-RvIy~~~-~k--~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~ 102 (257)
T 3q48_A 29 GLIAQGT-RVVFPAS-ER--EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL 102 (257)
T ss_dssp --CCSCS-EEEEETT-CS--EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred eEEEcce-EEEEeCC-Cc--EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC
Confidence 4778885 8888743 22 3799999999987766554322 1 1399999999999999999999875
No 14
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=90.35 E-value=2.3 Score=35.16 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=49.2
Q ss_pred EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCC-------CCcEEecCCceeeCCCCeEEEEEEeee
Q 029138 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKFV 144 (198)
Q Consensus 77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTTa-------P~~Y~VrP~~GiL~Pgesi~I~Vtl~~ 144 (198)
|.+++. .+.|+... -...|+|+|.++. ++.-.+.... ..-|.|.|+.-.|+||+...|.|.+..
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~ 73 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTP 73 (218)
T ss_dssp EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECG
T ss_pred cEeCce-EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecC
Confidence 567775 88888532 2469999999988 7766654422 224999999999999999999998863
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=90.32 E-value=2 Score=35.57 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=49.2
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEee
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
-|.+++. .+.|+... + ...|+|+|.++.++.-.+.... ..-|.|.|+.-.|+||+...|.|.+.
T Consensus 13 ~v~i~~T-RvIy~~~~-k--~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 81 (221)
T 2co7_B 13 SVKLGAT-RVIYHAGT-A--GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT 81 (221)
T ss_dssp ECEESCS-EEEEETTS-S--CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred EEEEcce-EEEEcCCC-C--EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEEC
Confidence 3678885 88888532 2 3699999999887766554321 12499999999999999999999886
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=87.32 E-value=3.4 Score=33.78 Aligned_cols=63 Identities=8% Similarity=0.134 Sum_probs=48.4
Q ss_pred EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEe-e
Q 029138 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFK-F 143 (198)
Q Consensus 77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl-~ 143 (198)
|.+++. .+.|+... -...|+|+|.++. ++.-.+-... ..-|.|.|+.-.|+||+...|.|.+ .
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~ 71 (205)
T 1klf_A 2 VALGAT-RVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDAT 71 (205)
T ss_dssp EEESCS-EEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECS
T ss_pred eEecce-EEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC
Confidence 567775 88888532 3469999999987 7666653321 2349999999999999999999988 5
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=86.12 E-value=8.7 Score=32.19 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=48.1
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEEee
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
-|.|++. .+.|+... + ...|+|+|.++.++.-.+-... ..-|.|.|+.-.|+||+...|.|.+.
T Consensus 23 ~v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~ 91 (239)
T 4djm_A 23 SLHLGAT-RVVYNPAS-S--GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRT 91 (239)
T ss_dssp CCEESCS-EEEECTTS-S--CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred eEEEcce-EEEEeCCC-C--EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 3778885 88887532 2 3699999999887654443211 22499999999999999999999875
No 18
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=85.72 E-value=6.3 Score=32.55 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=48.0
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-------CCcEEecCCceeeCCCCeEEEEEEee
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTa-------P~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
-|.|+-. .+.|+.. .+ ...|+|+|.++.++.-...... ..-|.|.|+.-.|+||+...|.|...
T Consensus 13 gv~l~~T-RvIy~~~-~k--~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~ 83 (218)
T 4ay0_A 13 GVTIGES-RIIYPLD-AA--GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQA 83 (218)
T ss_dssp CEEESCC-EEEEETT-CS--CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred eEEECce-EEEECCC-Cc--EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEec
Confidence 3677764 8888742 22 3689999999888665544311 12399999999999999999999885
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=83.94 E-value=5.1 Score=32.68 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=47.7
Q ss_pred EEEcCCCceEeeCCCCCeeEEEEEEECCCC-CeEEEEEeeCC-----CCcEEecCCceeeCCCCeEEEEEE-ee
Q 029138 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATVF-KF 143 (198)
Q Consensus 77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~-~~VAFKVKTTa-----P~~Y~VrP~~GiL~Pgesi~I~Vt-l~ 143 (198)
|.+++. .+.|+... -...|+|+|.++ .++.-.+-... ..-|.|.|+.-.|+||+...|.|. +.
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~ 71 (206)
T 1l4i_A 2 VALGAT-RVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDAT 71 (206)
T ss_dssp EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECC
T ss_pred eEeCce-EEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC
Confidence 567775 88888532 346999999986 77666654321 234999999999999999999998 64
No 20
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=81.04 E-value=11 Score=34.18 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEe----------------------cCCceee
Q 029138 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM----------------------RPPGGVL 130 (198)
Q Consensus 73 ~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~V----------------------rP~~GiL 130 (198)
....+.++.. .-.|.. +|+..+-.|+++|.++++|-..==+|+.-+|.- .|+ .=|
T Consensus 246 ~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI 322 (382)
T 1yew_A 246 PAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPL 322 (382)
T ss_dssp CCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCB
T ss_pred CCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCc
Confidence 4666777775 666665 688999999999999999988866666656533 222 238
Q ss_pred CCCCeEEEEEEee
Q 029138 131 APGDSIIATVFKF 143 (198)
Q Consensus 131 ~Pgesi~I~Vtl~ 143 (198)
+|||+.+|.|..+
T Consensus 323 ~PGETr~~~v~a~ 335 (382)
T 1yew_A 323 APGETRTVDVTAS 335 (382)
T ss_dssp CTTCEEEEEEEEE
T ss_pred CCCceeEEEEEee
Confidence 9999999999998
No 21
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=78.42 E-value=15 Score=30.62 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=44.7
Q ss_pred EEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEE--eeCC----CCcEEecCCceeeCCCCeEEEEEEee
Q 029138 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKF--QTTA----PKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 77 L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKV--KTTa----P~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
|.++.. .+.|+.. .+ ...|+|+|..+. ++.-.+ ..-. ..-|.|.|+.-.|+||+...|.|.+.
T Consensus 2 ~~l~~T-RvIy~~~-~k--~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~ 71 (224)
T 3gfu_C 2 LAVDQT-RYIFRGD-KD--ALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMA 71 (224)
T ss_dssp EECSCS-EEEEETT-SS--CEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred ccccce-EEEEeCC-Cc--eEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 456664 7888753 22 369999999876 543332 2211 12399999999999999999999875
No 22
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=77.06 E-value=7.6 Score=35.50 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEe---------------------cCCceeeCC
Q 029138 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM---------------------RPPGGVLAP 132 (198)
Q Consensus 74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~V---------------------rP~~GiL~P 132 (198)
...+.++-. .-.|.. +++..+-.|+++|.++++|-..==+|+.-+|.= .|+ -|+|
T Consensus 281 ~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~P 356 (419)
T 3rfr_A 281 KEQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAP 356 (419)
T ss_dssp SCCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCT
T ss_pred CCceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCC
Confidence 344666664 666765 688899999999999999988755666655541 223 5999
Q ss_pred CCeEEEEEEee
Q 029138 133 GDSIIATVFKF 143 (198)
Q Consensus 133 gesi~I~Vtl~ 143 (198)
||+.+|+|..+
T Consensus 357 GETrt~~V~a~ 367 (419)
T 3rfr_A 357 GESKEIVVKIQ 367 (419)
T ss_dssp TCEEEEEEEEE
T ss_pred CcceEEEEEee
Confidence 99999999998
No 23
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=74.68 E-value=8.5 Score=30.11 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=26.4
Q ss_pred EEEEECCCCCeEE---EEEeeCCCC--cEEecCCceeeCCCCeEEE
Q 029138 98 AVRLKNTSKSHVA---FKFQTTAPK--SCYMRPPGGVLAPGDSIIA 138 (198)
Q Consensus 98 ~LtL~N~S~~~VA---FKVKTTaP~--~Y~VrP~~GiL~Pgesi~I 138 (198)
.|+|.|.+++.+. |+|+=...+ .-+.=|+.=+|+||+++.|
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 7899999887664 566533222 1233455558999998765
No 24
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=72.23 E-value=15 Score=26.86 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=42.8
Q ss_pred ceEeeCCCCC-eeEEEEEEECCCCCeEEEEEeeCCCCcEEe-cCCceeeCCCCeEEEEEEee
Q 029138 84 NLYFPYEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 84 ~L~F~~~~~k-~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~V-rP~~GiL~Pgesi~I~Vtl~ 143 (198)
.|+-....|. +=...|+|.|.+.++..|.++....+.+.+ .|..=.|.||+...+.|++.
T Consensus 21 ~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 21 QLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp CCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEE
T ss_pred ceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEE
Confidence 4554444454 334799999999999999998876444554 35545889999988888886
No 25
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=54.82 E-value=65 Score=24.21 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=39.8
Q ss_pred CCCCeeEEEEEEECCCCC-eEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 90 EPGKQTRSAVRLKNTSKS-HVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 90 ~~~k~v~s~LtL~N~S~~-~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
..|+.+.-.++++|.... -=+|+|+-...+...-.-..+ |+||++..|.+...
T Consensus 30 ~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~ 83 (127)
T 3idu_A 30 GVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWT 83 (127)
T ss_dssp CTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEEC
T ss_pred cCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEE
Confidence 358888999999999875 467888866665544332333 99999999999884
No 26
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=48.47 E-value=44 Score=28.41 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=36.9
Q ss_pred CCeeEEEEEEECCCCCeEE-EEEeeCCCC----cEE--ecCCceeeCCCCeEEEEEEeeecCCC
Q 029138 92 GKQTRSAVRLKNTSKSHVA-FKFQTTAPK----SCY--MRPPGGVLAPGDSIIATVFKFVEAPE 148 (198)
Q Consensus 92 ~k~v~s~LtL~N~S~~~VA-FKVKTTaP~----~Y~--VrP~~GiL~Pgesi~I~Vtl~~e~P~ 148 (198)
+...+-.|.+.|.+..++. |++....++ .+. .+|.-..|+|++.+...|......|+
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~~pF 130 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDF 130 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCC
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEcccc
Confidence 4467789999999987665 666544444 343 45666899999986555443222354
No 27
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=45.11 E-value=50 Score=25.47 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=26.8
Q ss_pred EEEEECCCCCeEE---EEEeeCCCC---cEEecCCceeeCCCCeEEE
Q 029138 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (198)
Q Consensus 98 ~LtL~N~S~~~VA---FKVKTTaP~---~Y~VrP~~GiL~Pgesi~I 138 (198)
.|+|.|.+++.+. |+|+=...+ .-+.=|+.=+|+||+++.|
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 7889999877664 667644321 2233466678999998653
No 28
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=40.54 E-value=68 Score=25.20 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=51.7
Q ss_pred EEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCCCCCCCeEEEEEEEeCCCC
Q 029138 97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI 174 (198)
Q Consensus 97 s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~~~~kDKFlVqs~~v~~~~ 174 (198)
-.+-|.|.|+..+.|-..+-..+.+.+| ..|.|+|+..+.|.=.-. .+...-.+|.||-+.-..+.
T Consensus 30 fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~-----------~eln~~~~~~vQ~layK~~k 95 (147)
T 2huh_A 30 FEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTK-----------DVLNEMERVAVQLIAFKDGK 95 (147)
T ss_dssp EEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECG-----------GGGGGCSSEEEEEEEECSSS
T ss_pred eEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeCh-----------hHhcCCceEEEEEEEEcCCC
Confidence 4677899999999999988777788777 689999999988875542 12345678999988887744
No 29
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=40.34 E-value=30 Score=25.82 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=33.4
Q ss_pred hhcCCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 029138 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (198)
Q Consensus 68 ~~~~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKT 115 (198)
.-.+|..-.|.+.|..-=....-.+..++..|+|.|+...++.-|+|-
T Consensus 51 qaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kl 98 (122)
T 3zy7_A 51 QAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 98 (122)
T ss_dssp EEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEE
T ss_pred EEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEE
Confidence 456788889999998432233212567999999999987666555554
No 30
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=38.77 E-value=1e+02 Score=22.16 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=38.1
Q ss_pred CCCeeEEEEEEECCCCC---eEEEEEeeCCC---CcEEecCCceeeCCCCeEEEEEEee
Q 029138 91 PGKQTRSAVRLKNTSKS---HVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 91 ~~k~v~s~LtL~N~S~~---~VAFKVKTTaP---~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
-++.....++++|+-.. .+.|.|--..- ..+.+ |-|.||+++.+.+.+.
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~~----~~v~pg~~~~~~~~~~ 72 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILNV----GDIGGNETVTLRQSFV 72 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEEE----CCBCTTCEEEEEEEEC
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEEc----CcCCCCCEEEEEEEEe
Confidence 37889999999999764 77888875433 33333 6699999999999995
No 31
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=38.37 E-value=73 Score=21.89 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=34.6
Q ss_pred EEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 78 RLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 78 ~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
..+|+ .|..+ .|+.+ .+.++|.....-.|-+.... ..+.+.||++..+.++..
T Consensus 24 ~F~P~-~i~v~--~G~tV--~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~~ 76 (100)
T 4hci_A 24 YFNPN-VITIP--INEST--TLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKPK 76 (100)
T ss_dssp EEESS-EEEEC--TTSCE--EEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECCC
T ss_pred EEeCC-EEEEC--CCCEE--EEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEecc
Confidence 56775 77765 56655 67778887655556553221 135789999988887753
No 32
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=35.88 E-value=1.1e+02 Score=26.51 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=50.1
Q ss_pred EEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEeeecCCCCcCCCCCCCCCCCeEEEEEEEeCCCC
Q 029138 97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGGI 174 (198)
Q Consensus 97 s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~~~~kDKFlVqs~~v~~~~ 174 (198)
-.|.|+|.++- -|.++-+++..|.+.+..=-|.|+++..+.|... . ......-+|-|.-..+.+++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~ 335 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFK----Q------GIKGGDVNFEVTNFIVAPDK 335 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEEC----T------TCCCCEEEEEEEEEEEETTE
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecc----c------cccceEEEEEeeeeeecCCC
Confidence 47888888876 5677778999999999999999999999998773 1 11345567877766665544
No 33
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=35.70 E-value=54 Score=24.58 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=28.2
Q ss_pred EEEEECCCCCeEE---EEEeeCCCC---cEEecCCceeeCCCCeEEE
Q 029138 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (198)
Q Consensus 98 ~LtL~N~S~~~VA---FKVKTTaP~---~Y~VrP~~GiL~Pgesi~I 138 (198)
.|+|.|.+++.+. |+++-...+ .|.. |+.=+|+||+++.|
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 7899999887665 777644332 3555 55569999998765
No 34
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=35.33 E-value=1.4e+02 Score=22.36 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecC-------------------CceeeCCCCeEEEEEEee
Q 029138 91 PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP-------------------PGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 91 ~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP-------------------~~GiL~Pgesi~I~Vtl~ 143 (198)
.|..+.-.|+|+|+++..+-+.+.+--.=-|.|+- ..=.|+||++....+...
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~ 87 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWK 87 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEES
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeC
Confidence 45677889999999998887776543221222222 122578888888888873
No 35
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=35.32 E-value=1.3e+02 Score=22.13 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=48.4
Q ss_pred eeEEEEEEECCCCCe-EEEEEeeCCCCcEEec--CCce-eeCC--CCeEEEEEEeeecCCCCcCCCCCCCCCCCeEEEEE
Q 029138 94 QTRSAVRLKNTSKSH-VAFKFQTTAPKSCYMR--PPGG-VLAP--GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMS 167 (198)
Q Consensus 94 ~v~s~LtL~N~S~~~-VAFKVKTTaP~~Y~Vr--P~~G-iL~P--gesi~I~Vtl~~e~P~~~e~~p~~~~~kDKFlVqs 167 (198)
...-.++..|.+..+ =-|.++.-.|+.|.++ |.+| .|.| +..+.=.+.+. .| ....-+=|+.|.+
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~--n~-------~~~~lklR~klsY 100 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVL--NP-------QKQQLRMRIKLTF 100 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEE--CT-------TCCCCCEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEE--CC-------CCCCEEEEEEEEE
Confidence 455678888998754 4577787788876655 7777 7999 66555444443 23 1224556777766
Q ss_pred EEeCCCC-------Cchhhhh
Q 029138 168 LKVKGGI-------DYVPELV 181 (198)
Q Consensus 168 ~~v~~~~-------d~~~elf 181 (198)
..-.... +|++++|
T Consensus 101 ~~~g~~~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 101 NWNGYKVQSEAEVNNFPPQSW 121 (122)
T ss_dssp EETTEEEEEEEEECCCCGGGT
T ss_pred EECCEEEEEEEEECCCChhhC
Confidence 5422111 4677777
No 36
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=35.06 E-value=78 Score=26.59 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=38.8
Q ss_pred CCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeE-EEEEeeCCCCcEEecCCc-----eeeCCCCeEEEEEEee
Q 029138 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMRPPG-----GVLAPGDSIIATVFKF 143 (198)
Q Consensus 74 ~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~V-AFKVKTTaP~~Y~VrP~~-----GiL~Pgesi~I~Vtl~ 143 (198)
++-|.|+=. |... +.++.=.|+++|.+..++ -|.|+-+ ...|-+.|.. .-|+||+++++.|-+.
T Consensus 41 g~GLeI~g~----f~r~-~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 41 AKGLEISGT----FTHR-QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTTEEEEEE----EEEE-TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCcEEEEEE----EEEe-CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 456666532 3332 556778999999988742 2333332 2223333321 3499999999999886
No 37
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=34.69 E-value=1.7e+02 Score=23.24 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=46.5
Q ss_pred CCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCc---------------eeeCCCCeEEEEEEeeecCCCCcCCCCCC
Q 029138 92 GKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPG---------------GVLAPGDSIIATVFKFVEAPENNERQPLD 156 (198)
Q Consensus 92 ~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~---------------GiL~Pgesi~I~Vtl~~e~P~~~e~~p~~ 156 (198)
|......-+.+|.++++|. ..-.|.|.|.. =.|.|||+++.-|....+ |.-.++ ++
T Consensus 61 GE~~~~~y~a~N~sd~~i~------G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F~ID-P~i~~D--~~ 131 (164)
T 1so9_A 61 GETVQIMYRAKNLASTPTT------GQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVD-PEIVKP--VE 131 (164)
T ss_dssp TCCCCEEEEEEECSSSCEE------CCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBC-GGGGSS--TT
T ss_pred CCeEEEEEEEECCCCCcEE------EEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeEEEEEC-CCcCCC--cc
Confidence 5555578889999999763 44456666643 379999999988877643 333333 33
Q ss_pred CCCCCeEEEEEEEeC
Q 029138 157 QKSKDKFKIMSLKVK 171 (198)
Q Consensus 157 ~~~kDKFlVqs~~v~ 171 (198)
++.-+...+-+..-+
T Consensus 132 ~~~v~tITLSYTFf~ 146 (164)
T 1so9_A 132 TQGIKTLTLSYTFYP 146 (164)
T ss_dssp TTTCCBCCEEEEECS
T ss_pred cCCCCEEEEEEEEEe
Confidence 455666666666644
No 38
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=30.00 E-value=54 Score=25.07 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=30.4
Q ss_pred hhcCCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 029138 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (198)
Q Consensus 68 ~~~~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKT 115 (198)
+-.+|..-.|.+.|..-=....-.+..++..|+|.|+...++.-|+|.
T Consensus 69 QaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~~~l~LR~kl 116 (140)
T 1gyu_A 69 QAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 116 (140)
T ss_dssp EEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCEEEEE
T ss_pred EEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 445777788888885332222111345789999999876666655554
No 39
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=29.26 E-value=1.7e+02 Score=21.34 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCC------ceeeCCCCeEEEEEEe
Q 029138 92 GKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP------GGVLAPGDSIIATVFK 142 (198)
Q Consensus 92 ~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~------~GiL~Pgesi~I~Vtl 142 (198)
+......++|+|.++..+.||+.==..+-+.|.+. .=.|.+++++.|.-.-
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 44556789999999999999998777788888663 2368888888777664
No 40
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=29.00 E-value=79 Score=31.31 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.9
Q ss_pred EEEeeCCCCcEEecCCcee--eCCCCeEEEEEEee
Q 029138 111 FKFQTTAPKSCYMRPPGGV--LAPGDSIIATVFKF 143 (198)
Q Consensus 111 FKVKTTaP~~Y~VrP~~Gi--L~Pgesi~I~Vtl~ 143 (198)
|+|..-.-+.|++.|.-++ |.||+++.|.++..
T Consensus 76 ~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~~ 110 (858)
T 1c7s_A 76 FKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVAE 110 (858)
T ss_dssp EEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEEE
T ss_pred eeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEec
Confidence 4555445677888898886 99999999999753
No 41
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=28.60 E-value=1.8e+02 Score=21.52 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCeeEEEEEEECCCCCeE-EEEEeeCCCCcEEec--CCce-eeCCC
Q 029138 92 GKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAPG 133 (198)
Q Consensus 92 ~k~v~s~LtL~N~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iL~Pg 133 (198)
.....-.+...|.+..+| -|.++.-.|+.|.++ |..| .|.|+
T Consensus 30 ~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~ 75 (123)
T 3mnm_A 30 NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGN 75 (123)
T ss_dssp SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTT
T ss_pred CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCC
Confidence 334556788889987644 588888888876655 7777 79998
No 42
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=28.53 E-value=1.2e+02 Score=22.22 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=39.8
Q ss_pred CCCeeEEEEEEECCCCCe--EEEEEeeCCCCcEEecCC-ce----eeCCCCeEEEEEEe
Q 029138 91 PGKQTRSAVRLKNTSKSH--VAFKFQTTAPKSCYMRPP-GG----VLAPGDSIIATVFK 142 (198)
Q Consensus 91 ~~k~v~s~LtL~N~S~~~--VAFKVKTTaP~~Y~VrP~-~G----iL~Pgesi~I~Vtl 142 (198)
.+...+..+.|+|.+..+ |.||+-==..+-+.|.|. .. +|.+++++.|.-.-
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 456677899999999886 888887667788888875 22 48888888776654
No 43
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.12 E-value=48 Score=24.90 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=32.5
Q ss_pred hhcCCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 029138 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (198)
Q Consensus 68 ~~~~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKT 115 (198)
+-.+|..-.|.+.|..-=....-.+..++..|+|.|+...++.-|+|-
T Consensus 60 QaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~~~~~l~lR~kl 107 (131)
T 2e9g_A 60 QAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNPNKAPLRLKLRL 107 (131)
T ss_dssp EEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECTTCCCCCEEEEE
T ss_pred EEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 446788888999996443333212345788999999977766666664
No 44
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=25.34 E-value=2.5e+02 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=38.3
Q ss_pred eEEEEEEECCCCCeEEEEEeeCCCCc--EEecCCceee-CCCCeEEEEEEee
Q 029138 95 TRSAVRLKNTSKSHVAFKFQTTAPKS--CYMRPPGGVL-APGDSIIATVFKF 143 (198)
Q Consensus 95 v~s~LtL~N~S~~~VAFKVKTTaP~~--Y~VrP~~GiL-~Pgesi~I~Vtl~ 143 (198)
.+-.-+++|.....-.|+++.++|.- -.|.|..=.+ +.||+..++|++.
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~ 590 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR 590 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEE
Confidence 34456799999999999999998875 4567887555 5689888888885
No 45
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=24.30 E-value=1.3e+02 Score=22.35 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=30.6
Q ss_pred hhcCCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCC---CCeEEEEEee
Q 029138 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTS---KSHVAFKFQT 115 (198)
Q Consensus 68 ~~~~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S---~~~VAFKVKT 115 (198)
.-.+|..-.|.+.|..-=..+.-....++..|+|.|+. ..++.-|+|-
T Consensus 53 qaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~~~~~~~lklR~kl 103 (123)
T 3mnm_A 53 LLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPSKALXVKWKV 103 (123)
T ss_dssp EEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEEESCCCC---CCEEEEEE
T ss_pred EEecCcccEEEeECCCcCccCCCCCCCEEEEEEEecCCCCCCCCEEEEEEE
Confidence 44678888999999743222221226789999999886 4555555554
No 46
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=24.20 E-value=2.1e+02 Score=20.75 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=36.3
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCCC----------------CcEEe--cC----CceeeCC
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTAP----------------KSCYM--RP----PGGVLAP 132 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~-~VAFKVKTTaP----------------~~Y~V--rP----~~GiL~P 132 (198)
.+..+|. .|.++ .|+.+ .|+++|.... .--|.+..... ..|.= .+ ....|.|
T Consensus 29 ~~~F~p~-~i~v~--~G~~V--~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~p 103 (139)
T 2aan_A 29 ELAFDKT-ELTVS--AGQTV--TIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANG 103 (139)
T ss_dssp SSSBSCS-EEEEC--TTCEE--EEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCT
T ss_pred ccEEcCC-eEEEC--CCCEE--EEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCC
Confidence 4667775 77765 56644 7788998654 33444443220 00100 01 1356899
Q ss_pred CCeEEEEEEe
Q 029138 133 GDSIIATVFK 142 (198)
Q Consensus 133 gesi~I~Vtl 142 (198)
|++..|+++.
T Consensus 104 Get~~v~f~~ 113 (139)
T 2aan_A 104 NETVEVTFTA 113 (139)
T ss_dssp TCEEEEEEEC
T ss_pred CCEEEEEEEC
Confidence 9999998876
No 47
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=23.33 E-value=60 Score=24.25 Aligned_cols=62 Identities=6% Similarity=0.126 Sum_probs=35.8
Q ss_pred cEEEcCCCceEeeCCCC-CeeEEEEEEECCCCCe-----EEEEEeeCCC--------------CcEEe--cC----Ccee
Q 029138 76 RLRLDPSNNLYFPYEPG-KQTRSAVRLKNTSKSH-----VAFKFQTTAP--------------KSCYM--RP----PGGV 129 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~-k~v~s~LtL~N~S~~~-----VAFKVKTTaP--------------~~Y~V--rP----~~Gi 129 (198)
.+..+|. +|..+ .| +++ +|+|+|..+-+ =-|-|-.... ..|.- .+ ...+
T Consensus 12 ~m~F~p~-~i~V~--~G~~~v--tv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~ 86 (129)
T 1cuo_A 12 TMTYSTR-SISVP--ASCAEF--TVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPI 86 (129)
T ss_dssp SSCCSCS-EEEEE--TTCSEE--EEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCC
T ss_pred CceEccC-eEEEc--CCCeEE--EEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeE
Confidence 4566775 66665 46 654 88999997532 2233333210 01100 01 2357
Q ss_pred eCCCCeEEEEEEe
Q 029138 130 LAPGDSIIATVFK 142 (198)
Q Consensus 130 L~Pgesi~I~Vtl 142 (198)
|.||++..|+++.
T Consensus 87 l~pGet~svtf~~ 99 (129)
T 1cuo_A 87 IGGGEKTSVKFKV 99 (129)
T ss_dssp BCTTCEEEEEEEG
T ss_pred ECCCCEEEEEEec
Confidence 9999999999985
No 48
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=23.30 E-value=1.5e+02 Score=22.13 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=27.7
Q ss_pred EEEEECCCCCeEE---EEEeeCC---CCcEEecCCceeeCCCCeEEEEEEe
Q 029138 98 AVRLKNTSKSHVA---FKFQTTA---PKSCYMRPPGGVLAPGDSIIATVFK 142 (198)
Q Consensus 98 ~LtL~N~S~~~VA---FKVKTTa---P~~Y~VrP~~GiL~Pgesi~I~Vtl 142 (198)
.|+|.|.+++.+. |+++-.. +..-+.=|..=+|+||+++. |+-
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vt--Iws 68 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT--IWA 68 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEE--EEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEE--EEe
Confidence 7889999887664 5666441 22233346667899999865 444
No 49
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=22.85 E-value=53 Score=24.10 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=35.7
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEEC--CCCCeEEEEEeeCC----------------------CCcEEecCCceeeC
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKN--TSKSHVAFKFQTTA----------------------PKSCYMRPPGGVLA 131 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N--~S~~~VAFKVKTTa----------------------P~~Y~VrP~~GiL~ 131 (198)
.+..+|. .|.++ .|+.+ .|+++| .....--|-+.... .+..++......|.
T Consensus 27 ~~~F~P~-~i~v~--~G~tV--~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 101 (140)
T 1qhq_A 27 ALAFAQT-SLSLP--ANTVV--RLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLN 101 (140)
T ss_dssp SSSBSCS-EEEEE--TTCEE--EEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBC
T ss_pred CceEeCC-eEEEC--CCCEE--EEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeC
Confidence 4667775 77776 46644 788889 33322223332111 01112222346789
Q ss_pred CCCeEEEEEEee
Q 029138 132 PGDSIIATVFKF 143 (198)
Q Consensus 132 Pgesi~I~Vtl~ 143 (198)
||++..+++++.
T Consensus 102 pG~~~~~~~~~~ 113 (140)
T 1qhq_A 102 AGESGSVTFRTP 113 (140)
T ss_dssp TTEEEEEEEECC
T ss_pred CCceeEEEEEeC
Confidence 999999999874
No 50
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=22.83 E-value=1.6e+02 Score=23.54 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=31.8
Q ss_pred ceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEE
Q 029138 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATV 140 (198)
Q Consensus 84 ~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~V 140 (198)
.|.|... +. .|+++|++..+|.|-=-+-..+.+ . .+.|.|+++..+.+
T Consensus 130 ~L~~~~~-~~----~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 130 KLRFRRS-AN----SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp GCEECCC-SS----EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred eeEEEEc-CC----EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 5667642 22 599999999999886322232322 2 37999999987653
No 51
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=22.73 E-value=70 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=31.6
Q ss_pred hhcCCCCCcEEEcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 029138 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (198)
Q Consensus 68 ~~~~p~~~~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKT 115 (198)
+-.+|..-.|.+.|..-=....-.+..++..|+|.|....++.-|+|-
T Consensus 75 QaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~~~lklR~kl 122 (146)
T 1iu1_A 75 QAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQKQQLRMRIKL 122 (146)
T ss_dssp EEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCCEEEE
T ss_pred EEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 456788889999995332222211345789999999876665555554
No 52
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=21.61 E-value=2e+02 Score=20.81 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=32.2
Q ss_pred eEEEEEEECCCCCe-----EEEEEe-------------eCCCCcEEecCC--ceeeCC-CCeEEEEEEee
Q 029138 95 TRSAVRLKNTSKSH-----VAFKFQ-------------TTAPKSCYMRPP--GGVLAP-GDSIIATVFKF 143 (198)
Q Consensus 95 v~s~LtL~N~S~~~-----VAFKVK-------------TTaP~~Y~VrP~--~GiL~P-gesi~I~Vtl~ 143 (198)
....|+|+|.+..+ |.|.+- +..-..|.++|. .|-|+| |+++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 44678888887554 334321 112367899875 389999 99888777654
No 53
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=21.09 E-value=82 Score=23.50 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=36.3
Q ss_pred cEEEcCCCceEeeCCCCCeeEEEEEEECCCCCe-----EEEEEeeCC-------------C-CcEEe--cC----Cceee
Q 029138 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSH-----VAFKFQTTA-------------P-KSCYM--RP----PGGVL 130 (198)
Q Consensus 76 ~L~v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~-----VAFKVKTTa-------------P-~~Y~V--rP----~~GiL 130 (198)
.+..+|+ +|..+. .|+++ .|+++|...-+ =-|-|-..+ + ..|.- .+ ..++|
T Consensus 11 ~m~F~p~-~i~V~k-~G~~v--tv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 11 SMQFNTK-SIVVDK-TCKEF--TINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TSCBSCS-EEEECT-TCSEE--EEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CceEecC-EEEEec-CCcEE--EEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 4677775 777743 35544 89999997532 223333221 0 01110 01 14578
Q ss_pred CCCCeEEEEEEe
Q 029138 131 APGDSIIATVFK 142 (198)
Q Consensus 131 ~Pgesi~I~Vtl 142 (198)
.||++..|++..
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999999875
No 54
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=20.95 E-value=88 Score=25.75 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=29.5
Q ss_pred EEEEECCCCCeEEEEEeeCCCCcEEecCCce-eeCCCCeEEEEE
Q 029138 98 AVRLKNTSKSHVAFKFQTTAPKSCYMRPPGG-VLAPGDSIIATV 140 (198)
Q Consensus 98 ~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~G-iL~Pgesi~I~V 140 (198)
+|+|+|.....|-=-+.+.++ ..|..| .|+||++..|.|
T Consensus 2 tfti~N~C~~tVWp~~~~g~~----~l~~gG~~L~~G~s~~~~v 41 (206)
T 2vhk_A 2 TFEIVNRCSYTVWAAASKGDA----ALDAGGRQLNSGESWTINV 41 (206)
T ss_dssp EEEEEECSSSCEEEEEECSSS----EEEEEEEEECTTCEEEEEC
T ss_pred EEEEEeCCCCCcCCEEcCCCC----cCCCCCeecCCCCEEEEEC
Confidence 689999999999888875332 224455 799999988765
No 55
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.18 E-value=92 Score=20.43 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.5
Q ss_pred EEEEECCCCCeEEEEEeeCCC
Q 029138 98 AVRLKNTSKSHVAFKFQTTAP 118 (198)
Q Consensus 98 ~LtL~N~S~~~VAFKVKTTaP 118 (198)
.|+++....+.|.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888888899999998776
No 56
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=20.16 E-value=2.2e+02 Score=19.62 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=34.2
Q ss_pred EcCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCCcEEecCCceeeCCCCeEEEEEEee
Q 029138 79 LDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (198)
Q Consensus 79 v~P~~~L~F~~~~~k~v~s~LtL~N~S~~~VAFKVKTTaP~~Y~VrP~~GiL~Pgesi~I~Vtl~ 143 (198)
..|+ .|..+ .|+.+ .+.++|.....=.|-+.... + ...|.||++..+.++..
T Consensus 35 f~p~-~i~v~--~G~~V--~~~~~n~d~~~H~~~i~~~~-----~---~~~i~pG~~~~~~f~~~ 86 (112)
T 1iby_A 35 NEPE-TLVVK--KGDAV--KVVVENKSPISEGFSIDAFG-----V---QEVIKAGETKTISFTAD 86 (112)
T ss_dssp EESC-EEEEE--TTCEE--EEEEEECSSSCEEEEEGGGT-----E---EEEECTTCEEEEEEECC
T ss_pred EcCC-EEEEe--CCCEE--EEEEEECCCCeEEEEEcCCC-----c---eeEeCCCCEEEEEEECC
Confidence 4564 77776 46654 67888987644445554221 1 45699999999888753
No 57
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=20.13 E-value=76 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=15.1
Q ss_pred CccchhhhhcCCCCC---cEEEcCCCceEee
Q 029138 61 KTVSYVARSLLPPRR---RLRLDPSNNLYFP 88 (198)
Q Consensus 61 ~~~~~~~~~~~p~~~---~L~v~P~~~L~F~ 88 (198)
.+...+.+.+..... ...+.+. ++.|.
T Consensus 27 ~~~~~~l~~L~~~~~~~~~~~~~~g-e~i~~ 56 (243)
T 3la7_A 27 KALANVFRQMATGAFPPVVETFERN-KTIFF 56 (243)
T ss_dssp HHHHHHHHHHCCSSCCCEEEEECTT-CEEEC
T ss_pred chHHHHHHHHhhccchheeEEECCC-CEEEc
Confidence 344556666665555 5556554 65554
Done!