BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029139
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 69 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 128
++ ++ V ++ VK ++A + K N+DY WI E WGGAIE+ I++D I DI
Sbjct: 50 REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 109
Query: 129 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 168
+ + F E K+ ++++++ +HYD++ ++ F+
Sbjct: 110 AVKIE------KFNEDKFDNYILILFNGIHYDSLTMNEFK 143
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIF----PVQKDL---ALKLVKEQQRKKTYTDTA 53
+++++G+HYD+L ++ F +T+F P D+ AL+L ++ +T
Sbjct: 126 LILFNGIHYDSLTMNEF--------KTVFNKNQPESDDVLTAALQLASNLKQTGYSFNTH 177
Query: 54 NFTLCYGVCQIGVIGQKAIA 73
+ CQ+ +G++ +A
Sbjct: 178 KAQIKCNTCQMTFVGEREVA 197
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 69 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 128
++ ++ V ++ VK ++A + K N+DY WI E WGGAIE+ I++D I DI
Sbjct: 50 REXVSKEVLNNPVKFNDAILDKPNKDYAQWILKXESWGGAIEIGIISDALAVAIYVVDID 109
Query: 129 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 168
+ + F E K+ ++++++ +HYD++ + F+
Sbjct: 110 AVKIE------KFNEDKFDNYILILFNGIHYDSLTXNEFK 143
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIF----PVQKDL---ALKLVKEQQRKKTYTDTA 53
+++++G+HYD+L + F +T+F P D+ AL+L ++ +T
Sbjct: 126 LILFNGIHYDSLTXNEF--------KTVFNKNQPESDDVLTAALQLASNLKQTGYSFNTH 177
Query: 54 NFTLCYGVCQIGVIGQKAIA 73
+ CQ +G++ +A
Sbjct: 178 KAQIKCNTCQXTFVGEREVA 197
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 60 GVCQIGVIGQKAIAATVAS------DTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSI 113
C G + Q IA T ++ T K + + S CSW +D E++ +LSI
Sbjct: 43 SCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPS----CSWCKDYEQFEENKQLSI 98
Query: 114 LADYYGSEIAAYDIQTT 130
L + Y ++ Y QTT
Sbjct: 99 LVNCY-KKLCEYITQTT 114
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKDLALKLVKEQQRKKTYTDTANFTLCYGV 61
+I G H+D++ E AP D +A+ L + K TDT + +G
Sbjct: 222 IIIIGSHHDSV-----EKAPGANDDA-----SGVAVTLELARVMSKLKTDTELRFITFGA 271
Query: 62 CQIGVIGQKAIAATVASDTVKHS 84
+ G+IG K AA+++ D +K +
Sbjct: 272 EENGLIGSKKYAASLSEDEIKRT 294
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 102 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 132
P+ G E+S +AD Y S I YDI C
Sbjct: 167 PDMSTGEREMSWIADTYASTIGHYDINAHAC 197
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 6 GLHYDALAISPFEGAPEEFDQTIFPVQKDL 35
G H +++ FE APEE + I P++K L
Sbjct: 197 GPHTIEESLNVFEAAPEEIENRIIPLEKCL 226
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 102 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 132
P+ G E+S +AD Y S I YDI C
Sbjct: 171 PDMSTGEREMSWIADTYASTIGHYDINAHAC 201
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 102 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 132
P+ G E+S +AD Y S I YDI C
Sbjct: 167 PDMSTGEREMSWIADTYASTIGHYDINAHAC 197
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 102 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 132
P+ G E+S +AD Y S I YDI C
Sbjct: 162 PDMSTGEREMSWIADTYASTIGHYDINAHAC 192
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 6 GLHYDALAISPFEGAPEEFDQTIFPVQKDL 35
G H +++ FE APEE + I P++K L
Sbjct: 197 GPHTIEESLNVFEAAPEEIENRIIPLEKCL 226
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 102 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 132
P+ G E+S +AD Y S I YDI C
Sbjct: 162 PDMSTGEREMSWIADTYASTIGHYDINAHAC 192
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 6 GLHYDALAISPFEGAPEEFDQTIFPVQKDL 35
G H +++ FE APEE + I P++K L
Sbjct: 197 GPHTIEESLNVFEAAPEEIENRIIPLEKCL 226
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 6 GLHYDALAISPFEGAPEEFDQTIFPVQKDL 35
G H +++ FE APEE + I P++K L
Sbjct: 197 GPHTIEESLNVFEAAPEEIENRIIPLEKCL 226
>pdb|4HXD|B Chain B, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|D Chain D, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 174
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 89 GKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSE 148
G S +Y +WGG++E S+L+ + + I + + +T + F + S
Sbjct: 82 GISKDEYIKVAMKDNEWGGSLEASMLSKHLQTTIILWVVNST--EQVTAAIKFGPGRVST 139
Query: 149 RVMLIY-DELHYDAVAI 164
+ L++ H+DA+ I
Sbjct: 140 ALNLMHVGRTHFDALRI 156
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 87 FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 127
+G S +DY + +WG +E S+LA G I + +
Sbjct: 81 LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 121
>pdb|3PHU|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
pdb|3PHU|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
Length = 219
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 87 FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 127
+G S +DY + +WG +E S+LA G I + +
Sbjct: 83 LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 123
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 87 FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 127
+G S +DY + +WG +E S+LA G I + +
Sbjct: 83 LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 123
>pdb|3IHM|A Chain A, Structure Of The Oxygenase Component Of A Pseudomonas
Styrene Monooxygenase
pdb|3IHM|B Chain B, Structure Of The Oxygenase Component Of A Pseudomonas
Styrene Monooxygenase
Length = 430
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 9 YDALAISPFEGAPEEFDQTIFPVQKDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIG 68
YDA++ EG E++D + K AL V E+Q + + + LC G+ + I
Sbjct: 141 YDAVSAEDLEGLSEQYDLLVVCTGK-YALGKVFEKQSENSPFEKPQRALCVGLFK--GIK 197
Query: 69 QKAIAATVASDTVKHSE 85
+ I A S + H E
Sbjct: 198 EAPIRAVTMSFSPGHGE 214
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 87 FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 127
+G S +DY + +WG +E S+LA G I + +
Sbjct: 81 LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 121
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 87 FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 127
+G S +DY + +WG +E S+LA G I + +
Sbjct: 83 LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 123
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 26.6 bits (57), Expect = 9.2, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 97 SWIQDPEKWGGAIELSILADYYGSEIAAY--DIQTTRCDLYGQCSHFQEKKYSERVMLIY 154
SWI+ P G A+E+ LA Y I AY ++ + ++ + F V +
Sbjct: 396 SWIKSPRWRGHAVEVGPLARY----ILAYAQGVEYVKTQVHTSLNRFNA------VCRLL 445
Query: 155 DELHYDAVAISAFEGAPV 172
D H D + AF G+ +
Sbjct: 446 DPNHKDITDLKAFLGSTI 463
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,093,627
Number of Sequences: 62578
Number of extensions: 236423
Number of successful extensions: 464
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 30
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)