BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029139
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1
PE=3 SV=1
Length = 325
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 5/110 (4%)
Query: 72 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 131
IA V SD +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y EIAA+DI T
Sbjct: 158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217
Query: 132 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPV 181
YG +++KY+ERV LIYD +HYDA++I + P +FD + V
Sbjct: 218 MYCYG-----EDRKYTERVYLIYDGIHYDALSICLTKNGPEDFDITRFSV 262
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPV-QKDLALK---LVKEQQRKKTYTDTANFTL 57
LIYDG+HYDAL+I + PE+FD T F V KD K L++++ + +TDTA F+L
Sbjct: 233 LIYDGIHYDALSICLTKNGPEDFDITRFSVDDKDSLAKMKVLIEKEFKAGKFTDTAKFSL 292
Query: 58 CYGVCQIGVIGQKAIAATVASDTVKH 83
C + G+K A + + T H
Sbjct: 293 ICLNCNKTLKGEK--EAAIHASTTGH 316
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 12/115 (10%)
Query: 55 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 107
FT Y V + GV+ ++ IA VASD V +SEA +GK+N+DYC WI+ + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216
Query: 108 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 162
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 266
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKDL----ALKLVKEQQRKKTYTDTANFT 56
+LIYDG+HYD L + + P+ TIF D+ AL+L E +RK+ +TD FT
Sbjct: 255 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVLVQALELADEARRKRQFTDVNRFT 312
Query: 57 LCYGVCQIGVIGQ 69
L +CQ G+ GQ
Sbjct: 313 LRCMICQKGLTGQ 325
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18292 PE=3 SV=1
Length = 358
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
Query: 72 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 131
IA V++DT ++++A +GKSN DYC+WIQ + WGGAIE+SIL++YYG EI DIQ
Sbjct: 197 IAQEVSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 256
Query: 132 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAE 191
+ +G ++K + RV L++D +HYD + + E Q+SVP TI P E
Sbjct: 257 INRFG-----EDKNFGLRVFLLFDGIHYDPLYM--------ETQQNSVPA----TIFPVE 299
Query: 192 ELA 194
E+
Sbjct: 300 EMG 302
Score = 37.4 bits (85), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQK----DLALKLVKEQQRKKTYTDTANFTL 57
L++DG+HYD L + E TIFPV++ A ++ E + + +T+ FTL
Sbjct: 272 LLFDGIHYDPLYM---ETQQNSVPATIFPVEEMGVYQQAEQIANEAKSSRQFTNVDKFTL 328
Query: 58 CYGVCQIGVIGQ 69
C + ++GQ
Sbjct: 329 RCMDCDVMLVGQ 340
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 12/115 (10%)
Query: 55 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 107
FT Y V + GV+ ++ IA VASD +SEA +GK+NQ+YC WI+ + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221
Query: 108 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 162
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 271
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKDL----ALKLVKEQQRKKTYTDTANFT 56
+LIYDG+HYD L + + P+ TIF D+ AL+L E +R++ +TD FT
Sbjct: 260 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVLVQALELADEARRRRQFTDVNRFT 317
Query: 57 LCYGVCQIGVIGQ 69
L VCQ G+ GQ
Sbjct: 318 LRCMVCQKGLTGQ 330
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 12/115 (10%)
Query: 55 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 107
FT Y V + GV+ ++ IA VASD +SEA +GK+N++YC WI+ + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216
Query: 108 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 162
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 266
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKDL----ALKLVKEQQRKKTYTDTANFT 56
+LIYDG+HYD L + + P+ TIF D+ AL+L E +RK+ +TD FT
Sbjct: 255 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVLVQALELADEARRKRQFTDVNRFT 312
Query: 57 LCYGVCQIGVIGQ 69
L +CQ G+ GQ
Sbjct: 313 LRCMLCQKGLTGQ 325
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 5/91 (5%)
Query: 72 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 131
IA VASD +SEA +GK+N++YC+WI+ + WGGAIE+SIL+ +Y EI D QT R
Sbjct: 139 IAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQTVR 198
Query: 132 CDLYGQCSHFQEKKYSERVMLIYDELHYDAV 162
D +G ++ Y++RV+LIYD +HYD +
Sbjct: 199 VDRFG-----EDAGYTKRVLLIYDGIHYDPL 224
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 1 MLIYDGLHYDAL-AISPFEGAPEEFDQTIFPVQKDL----ALKLVKEQQRKKTYTDTANF 55
+LIYDG+HYD L + P P QT+F D+ AL+L E +RK+ +TD F
Sbjct: 213 LLIYDGIHYDPLQKVLPGSDVPA---QTVFSTVDDVILAQALELADEARRKRQFTDVNRF 269
Query: 56 TLCYGVCQIGVIGQK 70
L VCQ G++GQK
Sbjct: 270 ALRCMVCQTGLVGQK 284
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 12/117 (10%)
Query: 55 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 107
FT Y V + GV+ ++ IA VASD +SEA +GK+N++YC WI+ + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRFIAQIVASDPDFYSEAILGKTNEEYCDWIKRDDTWGG 221
Query: 108 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAI 164
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPLHL 273
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKDL----ALKLVKEQQRKKTYTDTANFT 56
+LIYDG+HYD L + + P+ TIF D+ AL+L E ++K+ +TD FT
Sbjct: 260 LLIYDGIHYDPLHLVFPD--PDTPPLTIFSSYDDIVLVQALELADEARKKRQFTDVNRFT 317
Query: 57 LCYGVCQIGVIGQ 69
L VCQ G+ GQ
Sbjct: 318 LRCMVCQKGLTGQ 330
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1
Length = 304
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 5/91 (5%)
Query: 72 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 131
IA VASD + +A +GKSN++YCSWI+ + WGGAIE+SIL+ +Y EI D QT R
Sbjct: 142 IAEIVASDQSAYCDAVLGKSNEEYCSWIRREDTWGGAIEVSILSKFYQCEICVVDTQTVR 201
Query: 132 CDLYGQCSHFQEKKYSERVMLIYDELHYDAV 162
D +G ++ Y++RV+LIYD +HYD +
Sbjct: 202 IDRFG-----EDSGYTKRVLLIYDGIHYDPL 227
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKDLAL----KLVKEQQRKKTYTDTANFT 56
+LIYDG+HYD L + P+ T+F D AL +L + ++K+ +TD F
Sbjct: 216 LLIYDGIHYDPLQRQFPD--PDMPPMTVFSTTDDEALVQAMELADDARKKRQFTDVNQFA 273
Query: 57 LCYGVCQIGVIGQKA 71
L CQ G+ GQ A
Sbjct: 274 LRCMACQKGLTGQSA 288
>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1
Length = 302
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 5/91 (5%)
Query: 72 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 131
IA VASD + EA +GK+N++YC WI+ E WGGAIE+SIL+ +Y EI D QT R
Sbjct: 140 IAQIVASDPEAYCEAVLGKTNREYCEWIRREETWGGAIEVSILSKFYQCEICVVDTQTVR 199
Query: 132 CDLYGQCSHFQEKKYSERVMLIYDELHYDAV 162
D +G ++ Y++RV+LIYD +HYD +
Sbjct: 200 IDRFG-----EDAGYTKRVLLIYDGIHYDPL 225
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 1 MLIYDGLHYDALAIS-PFEGAPEEFDQTIFPVQKDL----ALKLVKEQQRKKTYTDTANF 55
+LIYDG+HYD L P P QTIF D+ AL+L E +RK+ +TD F
Sbjct: 214 LLIYDGIHYDPLERKIPDSDVPP---QTIFSTTDDVVLAQALELADEARRKRQFTDVNRF 270
Query: 56 TLCYGVCQIGVIGQ 69
TL VCQ G+ GQ
Sbjct: 271 TLRCMVCQKGLTGQ 284
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603
PE=2 SV=1
Length = 347
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 8/125 (6%)
Query: 72 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 131
IA VA+D +++A +GKSN +YC+WIQ + WGGAIE+SIL++YYG EI DIQ
Sbjct: 186 IAQEVAADPQSYNDAVLGKSNAEYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 245
Query: 132 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAE 191
+ +G ++K + RV L++D +HYD + + E +P + PV + AE
Sbjct: 246 INRFG-----EDKNFGLRVFLLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAE 297
Query: 192 ELAFE 196
+LA E
Sbjct: 298 QLANE 302
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQK----DLALKLVKEQQRKKTYTDTANFTL 57
L++DG+HYD L + E +P TIFPV++ A +L E Q + YT+ FTL
Sbjct: 261 LLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAEQLANEAQSSRQYTNVDKFTL 317
Query: 58 CYGVCQIGVIGQ 69
C + ++GQ
Sbjct: 318 RCMQCDVRLVGQ 329
>sp|O13974|OTU1_SCHPO Putative ubiquitin thioesterase otu1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=otu1 PE=1 SV=1
Length = 329
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 69 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 128
++ +A V S+ +S A +GK + +Y SWI+ WGG IELSIL+ ++G EI + D++
Sbjct: 163 REIVANQVLSNPDIYSTAILGKPSIEYASWIRKETSWGGYIELSILSSHFGVEICSVDVK 222
Query: 129 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISA 166
T R D Y + +R ++Y +HYD A++A
Sbjct: 223 TGRVDSYN-----PQPATGQRTYIVYSGIHYDLAALAA 255
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 19/80 (23%)
Query: 2 LIYDGLHYDALAISP-----------FEGAPEEFDQTIFPVQKDLALKLVKEQQRKKTYT 50
++Y G+HYD A++ F+ + D TI P + LA L+K YT
Sbjct: 241 IVYSGIHYDLAALAAVLWDTDVDVVLFDAS----DVTITPYVQQLA-SLLKNMHY---YT 292
Query: 51 DTANFTLCYGVCQIGVIGQK 70
DTA+F++ +C G++G+K
Sbjct: 293 DTASFSIRCTICGTGLVGEK 312
>sp|P43558|OTU1_YEAST Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU1 PE=1 SV=1
Length = 301
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 69 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 128
++ ++ V ++ VK ++A + K N+DY WI E WGGAIE+ I++D I DI
Sbjct: 139 REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 198
Query: 129 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 168
+ + F E K+ ++++++ +HYD++ ++ F+
Sbjct: 199 AVKIE------KFNEDKFDNYILILFNGIHYDSLTMNEFK 232
>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1
Length = 1107
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 85 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 144
EAFI S ++Y +++P++W G +E+S L+ Y + Y SH E
Sbjct: 80 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNV------SPSHVTEN 133
Query: 145 KYSERVMLIYDE-LHYDAV 162
+ E+V+L + HYD V
Sbjct: 134 NFPEKVLLCFSNGNHYDIV 152
>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3
Length = 1113
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 85 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 144
EAFI S ++Y +++P++W G +E+S L+ Y + Y S E
Sbjct: 80 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV------SPSQVTEN 133
Query: 145 KYSERVMLIYDE-LHYDAVAISAFEGAPVEFDQSS 178
+ E+V+L + HYD V P+++ +SS
Sbjct: 134 NFPEKVLLCFSNGNHYDIV-------YPIKYKESS 161
>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1
Length = 443
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 85 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 144
EA IG S + Y +++P++W G +E+S L+ Y + T + S E
Sbjct: 80 EAIIGGSFEGYLKRLENPQEWVGQMEISALSLMYRKDF------ITNLEPNVSPSQVTEN 133
Query: 145 KYSERVMLIYDE-LHYDAVAISAFEGAPVEFDQSS 178
+ E+V+L + HYD V PV++ +SS
Sbjct: 134 NFPEKVLLCFSNGNHYDIV-------YPVKYKESS 161
>sp|A6TK63|ATPA_ALKMQ ATP synthase subunit alpha OS=Alkaliphilus metalliredigens (strain
QYMF) GN=atpA PE=3 SV=1
Length = 505
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 66 VIGQKAIAAT-VASDTV---KHSEAF-----IGKSNQDYCSWIQDPEKWGGAIELSILAD 116
+IG + T +A DT+ KHS+ IG+ + S IQD + GA+E +I+
Sbjct: 167 IIGDRQTGKTAIAIDTIINQKHSDVICIYVAIGQ-KKSTVSQIQDTLEKNGAMEYTIIVA 225
Query: 117 YYGSEIAAYDIQTTRCDLYGQCSHFQE-KKYSERVMLIYDELHYDAVAISAF 167
SE+A Y C+ +E + + V++IYD+L AVA A
Sbjct: 226 STASELAPLQYIAP----YAGCAMGEEFMENGKHVLIIYDDLSKHAVAYRAM 273
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 67 IGQKAIAATVASDTVKHSEAFIG-----KSNQ-----DYCSWIQDPEKWGGAIELSILAD 116
+ +A+ A +KH E F G +S + DYC+ I++ KWG IE+ LA+
Sbjct: 213 LNSQALRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGSDIEIQALAN 272
Query: 117 YYGSEIAAYDIQ 128
+ Y+ +
Sbjct: 273 SLEVPVHVYNTE 284
>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium
discoideum GN=DDB_G0284757 PE=4 SV=2
Length = 766
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 87 FIGKSN-QDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKK 145
F+ +N DYC+ + WG + L A+++GS+I+ ++ + + + K
Sbjct: 686 FVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEI--IPSKI 743
Query: 146 YSERVMLI--YDELHYDAV 162
+++V+L+ Y E HY ++
Sbjct: 744 LNDKVLLLSHYAEFHYGSL 762
>sp|P33341|YEHB_ECOLI Uncharacterized outer membrane usher protein YehB OS=Escherichia
coli (strain K12) GN=yehB PE=3 SV=1
Length = 826
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 102 PEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDA 161
PE WG ++ DY+G ++ D Q + + + + Y+ YDE H++
Sbjct: 496 PEGWGSVSLSTLWRDYWGRSGSSKDYQLSYSN------NLRRISYTLAASQAYDENHHEE 549
Query: 162 VAISAFEGAPVEF-DQSSVPVRK 183
+ F P ++ D S P R+
Sbjct: 550 KRFNIFISIPFDWGDDVSTPRRQ 572
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,925,505
Number of Sequences: 539616
Number of extensions: 2865818
Number of successful extensions: 5638
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5587
Number of HSP's gapped (non-prelim): 34
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)