Query 029139
Match_columns 198
No_of_seqs 206 out of 556
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3288 OTU-like cysteine prot 100.0 1.8E-36 3.8E-41 261.1 5.7 125 66-197 139-263 (307)
2 KOG3288 OTU-like cysteine prot 99.9 2.1E-22 4.5E-27 174.1 5.5 81 1-84 219-303 (307)
3 KOG2606 OTU (ovarian tumor)-li 99.8 6.1E-21 1.3E-25 167.6 5.9 94 66-165 190-298 (302)
4 COG5539 Predicted cysteine pro 99.7 6E-18 1.3E-22 148.5 0.6 123 66-196 138-261 (306)
5 PF02338 OTU: OTU-like cystein 99.3 1.2E-12 2.6E-17 99.8 5.3 85 66-159 27-121 (121)
6 COG5539 Predicted cysteine pro 98.9 5.7E-10 1.2E-14 98.5 2.6 82 2-85 219-303 (306)
7 PF10275 Peptidase_C65: Peptid 98.5 5.1E-07 1.1E-11 77.6 8.6 94 66-163 140-243 (244)
8 KOG3991 Uncharacterized conser 98.4 5.2E-07 1.1E-11 77.8 6.6 96 66-164 157-255 (256)
9 KOG2605 OTU (ovarian tumor)-li 94.7 0.035 7.7E-07 51.3 4.0 61 67-128 247-310 (371)
10 PF01188 MR_MLE: Mandelate rac 38.1 44 0.00096 22.6 3.2 32 92-124 35-66 (67)
11 PHA00616 hypothetical protein 36.4 23 0.00051 23.2 1.4 28 58-86 3-30 (44)
12 KOG2989 Uncharacterized conser 34.3 22 0.00048 31.4 1.4 15 50-64 34-48 (253)
13 PRK12301 bssS biofilm formatio 33.8 35 0.00077 25.3 2.1 36 9-45 24-66 (84)
14 PF06988 NifT: NifT/FixU prote 30.4 2.9 6.2E-05 29.6 -3.9 30 82-111 12-41 (64)
15 COG3426 Butyrate kinase [Energ 25.5 44 0.00095 30.7 1.7 25 92-116 316-340 (358)
16 PF06107 DUF951: Bacterial pro 24.5 38 0.00083 23.4 0.9 16 53-68 28-43 (57)
17 cd00814 MetRS_core catalytic c 24.4 1.1E+02 0.0024 27.1 4.1 31 34-64 99-129 (319)
18 PF07967 zf-C3HC: C3HC zinc fi 24.1 29 0.00063 27.0 0.3 24 46-69 33-56 (133)
19 cd01775 CYR1_RA Ubiquitin doma 23.7 91 0.002 23.8 2.9 41 26-66 5-57 (97)
20 TIGR02934 nifT_nitrog probable 23.4 24 0.00053 25.1 -0.2 22 89-110 19-40 (67)
21 PF05129 Elf1: Transcription e 22.2 49 0.0011 24.1 1.2 33 52-99 42-74 (81)
22 cd00022 BIR Baculoviral inhibi 22.1 39 0.00086 22.8 0.6 27 45-71 23-49 (69)
23 KOG1247 Methionyl-tRNA synthet 20.7 61 0.0013 31.3 1.7 58 4-66 86-146 (567)
24 PF05415 Peptidase_C36: Beet n 20.2 92 0.002 23.7 2.3 33 91-126 35-69 (104)
No 1
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=261.07 Aligned_cols=125 Identities=46% Similarity=0.831 Sum_probs=117.5
Q ss_pred chhhHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCccccccc
Q 029139 66 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKK 145 (198)
Q Consensus 66 l~lR~~vA~~I~~n~~~y~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLS~~~~~~I~v~~~~~~~~~~~ge~~~~~~~~ 145 (198)
.+||+++|+.+++||+.|++||||+|+.|||.||+++++|||+|||+|||.+|+++|.|+|+++.|+++||| +++
T Consensus 139 ~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fge-----d~~ 213 (307)
T KOG3288|consen 139 YELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGE-----DKN 213 (307)
T ss_pred HHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecceeeehhcCC-----CCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999 878
Q ss_pred CCCeEEEEecCcccccccccccCCCCCCCCeeeeeCCCCCChhHHHHHHhhh
Q 029139 146 YSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFET 197 (198)
Q Consensus 146 ~~~~i~L~Y~G~HYdsl~~~~~~~~~~~~d~t~f~~~~~~~~~~~~~~a~~l 197 (198)
|.+|++|+|+|+|||+|++++. .|.+.|.|+||.+|+.++..++++|.+|
T Consensus 214 ~~~rv~llydGIHYD~l~m~~~--~~~~~~~tifp~~dd~v~~~alqLa~~~ 263 (307)
T KOG3288|consen 214 FDNRVLLLYDGIHYDPLAMNEF--KPTDVDNTIFPVSDDTVLTQALQLASEL 263 (307)
T ss_pred CCceEEEEecccccChhhhccC--CccCCcccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999875 6788999999999987777788877664
No 2
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-22 Score=174.11 Aligned_cols=81 Identities=52% Similarity=0.852 Sum_probs=74.5
Q ss_pred CeeecccccceeeccCCCCCCCCCCeeeeeCChH----HHHHHHHHHhhcCcccccccceeeeeeccccchhhHHHHHHH
Q 029139 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKD----LALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATV 76 (198)
Q Consensus 1 ~liYsGIHYD~l~~~~~~~~~~~~d~tif~~~~~----~a~~l~~~l~~~~~~Tdt~~f~lrC~~C~~~l~lR~~vA~~I 76 (198)
+|||||||||+|++++. .|.+.|-|+||.+|+ .|++||+++|.+||||||++|+|||++|+.++.|++. |..|
T Consensus 219 ~llydGIHYD~l~m~~~--~~~~~~~tifp~~dd~v~~~alqLa~~~k~~r~ytdt~~ftlRC~~Cq~glvGq~e-a~eH 295 (307)
T KOG3288|consen 219 LLLYDGIHYDPLAMNEF--KPTDVDNTIFPVSDDTVLTQALQLASELKRTRYYTDTAKFTLRCMVCQMGLVGQKE-AAEH 295 (307)
T ss_pred EEEecccccChhhhccC--CccCCcccccccccchHHHHHHHHHHHHHhcceeccccceEEEeeecccceeeHHH-HHHH
Confidence 58999999999999976 567789999999986 4999999999999999999999999999999999996 6799
Q ss_pred Hhcccccc
Q 029139 77 ASDTVKHS 84 (198)
Q Consensus 77 ~~n~~~y~ 84 (198)
++.++|-+
T Consensus 296 A~~TGH~n 303 (307)
T KOG3288|consen 296 AKATGHVN 303 (307)
T ss_pred HHhcCCCc
Confidence 99999965
No 3
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.1e-21 Score=167.58 Aligned_cols=94 Identities=20% Similarity=0.380 Sum_probs=81.0
Q ss_pred chhhHHHHHHHHhccccccccccC------CC---hHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeC
Q 029139 66 VIGQKAIAATVASDTVKHSEAFIG------KS---NQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYG 136 (198)
Q Consensus 66 l~lR~~vA~~I~~n~~~y~~~~L~------~~---~~eYc~~I~~~~~WGG~iEL~aLS~~~~~~I~v~~~~~~~~~~~g 136 (198)
..||...|+|+++|.++|-|.++. .+ |++||+.|++|+.|||+|||.|||++|++||.||+.+ +++..||
T Consensus 190 ~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~-~p~~~~g 268 (302)
T KOG2606|consen 190 QKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD-GPILEYG 268 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC-CCceeec
Confidence 479999999999999999995552 13 9999999999999999999999999999999999986 6688999
Q ss_pred CCcccccccCCCeEEEEec------Cccccccccc
Q 029139 137 QCSHFQEKKYSERVMLIYD------ELHYDAVAIS 165 (198)
Q Consensus 137 e~~~~~~~~~~~~i~L~Y~------G~HYdsl~~~ 165 (198)
+ +| ...++++|+|+ |+||||+...
T Consensus 269 e--ey---~kd~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 269 E--EY---GKDKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred h--hh---CCCCCeeeehHHhHHHHHhhhcccccc
Confidence 8 23 22478999994 9999999853
No 4
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6e-18 Score=148.49 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=101.8
Q ss_pred chhhHHHHHHHHhccccccccccCCChHHHhhhcCCCCccc-hHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCcccccc
Q 029139 66 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWG-GAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 144 (198)
Q Consensus 66 l~lR~~vA~~I~~n~~~y~~~~L~~~~~eYc~~I~~~~~WG-G~iEL~aLS~~~~~~I~v~~~~~~~~~~~ge~~~~~~~ 144 (198)
-.||.++|..+.+||+.|++++++.|.-.||+||.++.+|| |.||+++||..++++|.|+|+...+.++||+ .
T Consensus 138 ~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~-----~- 211 (306)
T COG5539 138 AKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNS-----H- 211 (306)
T ss_pred HHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccC-----C-
Confidence 47999999999999999999999999999999999999999 9999999999999999999999889999998 3
Q ss_pred cCCCeEEEEecCcccccccccccCCCCCCCCeeeeeCCCCCChhHHHHHHhh
Q 029139 145 KYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFE 196 (198)
Q Consensus 145 ~~~~~i~L~Y~G~HYdsl~~~~~~~~~~~~d~t~f~~~~~~~~~~~~~~a~~ 196 (198)
.|..++.+.|.|+|||...+...+ -....+...|+.++-.. -.++++|--
T Consensus 212 ~~~q~~~i~f~g~hfD~~t~~m~~-~dt~~ne~~~~a~~g~~-~ei~qLas~ 261 (306)
T COG5539 212 PYVQRISILFTGIHFDEETLAMVL-WDTYVNEVLFDASDGIT-IEIQQLASL 261 (306)
T ss_pred hhhhhhhhhhcccccchhhhhcch-HHHHHhhhcccccccch-HHHHHHHHH
Confidence 367889999999999999864321 01223445666665433 456666643
No 5
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.34 E-value=1.2e-12 Score=99.80 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=65.9
Q ss_pred chhhHHHHHHHH-hccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeee---eCCCccc
Q 029139 66 VIGQKAIAATVA-SDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDL---YGQCSHF 141 (198)
Q Consensus 66 l~lR~~vA~~I~-~n~~~y~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLS~~~~~~I~v~~~~~~~~~~---~ge~~~~ 141 (198)
.++|+.++++++ .+++.|.+.+.+. +|+++..|||++||.|||++|+++|.|++...++... ++.. .
T Consensus 27 ~~lR~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~--~ 97 (121)
T PF02338_consen 27 QELRKAVVDYLRDKNRDKFEEFLEGD-------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGK--Y 97 (121)
T ss_dssp HHHHHHHHHHHHTHTTTHHHHHHHHH-------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCE--E
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhh-------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCc--c
Confidence 489999999999 9999998833333 9999999999999999999999999999887665322 2210 0
Q ss_pred ccccCCCeEEEEec------Cccc
Q 029139 142 QEKKYSERVMLIYD------ELHY 159 (198)
Q Consensus 142 ~~~~~~~~i~L~Y~------G~HY 159 (198)
........+.|.|+ |+||
T Consensus 98 ~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 98 PPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp STTTTTTSEEEEEETEEEEETTEE
T ss_pred ccCCCCCeEEEEEcCCccCCCCCC
Confidence 01234567888887 6898
No 6
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.7e-10 Score=98.52 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=63.9
Q ss_pred eeecccccceeeccCCCCCCCCCCeeeeeCCh---HHHHHHHHHHhhcCcccccccceeeeeeccccchhhHHHHHHHHh
Q 029139 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQK---DLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVAS 78 (198)
Q Consensus 2 liYsGIHYD~l~~~~~~~~~~~~d~tif~~~~---~~a~~l~~~l~~~~~~Tdt~~f~lrC~~C~~~l~lR~~vA~~I~~ 78 (198)
++|+|||||..++...+- ...++.-.|+.++ -.+++||.-|+..+|+|||+++.+||+.|+++++|.+. +-.|+-
T Consensus 219 i~f~g~hfD~~t~~m~~~-dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c~~~~~~e~~-~~~Ha~ 296 (306)
T COG5539 219 ILFTGIHFDEETLAMVLW-DTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNICGTGFVGEKD-YYAHAL 296 (306)
T ss_pred hhhcccccchhhhhcchH-HHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeeccccccchhhH-HHHHHH
Confidence 479999999998653220 1112233344443 35999999999999999999999999999999999996 558999
Q ss_pred ccccccc
Q 029139 79 DTVKHSE 85 (198)
Q Consensus 79 n~~~y~~ 85 (198)
-+|||+.
T Consensus 297 a~GH~n~ 303 (306)
T COG5539 297 ATGHYNF 303 (306)
T ss_pred hhcCccc
Confidence 9999974
No 7
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=98.50 E-value=5.1e-07 Score=77.57 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHhccccccccccC---CChHHHhh-hcCCCCccchHHHHHHHHHHhCCeeEEEEcCCC---C---eeee
Q 029139 66 VIGQKAIAATVASDTVKHSEAFIG---KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT---R---CDLY 135 (198)
Q Consensus 66 l~lR~~vA~~I~~n~~~y~~~~L~---~~~~eYc~-~I~~~~~WGG~iEL~aLS~~~~~~I~v~~~~~~---~---~~~~ 135 (198)
.-+|-..+.+++.|++.|.+.+.+ .++++||+ .++....=.++|.+.|||+.++++|.|+-.+.+ . ...|
T Consensus 140 ~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~ 219 (244)
T PF10275_consen 140 IFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEF 219 (244)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEE
T ss_pred HHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccC
Confidence 468988999999999999884434 78999996 666666888999999999999999999987743 1 1234
Q ss_pred CCCcccccccCCCeEEEEecCccccccc
Q 029139 136 GQCSHFQEKKYSERVMLIYDELHYDAVA 163 (198)
Q Consensus 136 ge~~~~~~~~~~~~i~L~Y~G~HYdsl~ 163 (198)
.+. ..+...+|.|+|-.-|||.|+
T Consensus 220 ~~~----~~~~~~~i~LLyrpgHYdIly 243 (244)
T PF10275_consen 220 PPD----NESQEPQITLLYRPGHYDILY 243 (244)
T ss_dssp S-S----STTSS-SEEEEEETBEEEEEE
T ss_pred CCc----cCCCCCEEEEEEcCCcccccc
Confidence 220 012246799999988999886
No 8
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.2e-07 Score=77.82 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=77.6
Q ss_pred chhhHHHHHHHHhcccccccccc-C-CChHHHhhhcCCCC-ccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCcccc
Q 029139 66 VIGQKAIAATVASDTVKHSEAFI-G-KSNQDYCSWIQDPE-KWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQ 142 (198)
Q Consensus 66 l~lR~~vA~~I~~n~~~y~~~~L-~-~~~~eYc~~I~~~~-~WGG~iEL~aLS~~~~~~I~v~~~~~~~~~~~ge~~~~~ 142 (198)
.-+|-..+..|+++++.|.| |+ | +++++||..--.|. .-.++|+|.|||+.+++.|.|..++.+....+|.. .|.
T Consensus 157 ~ylRLvtS~~ik~~adfy~p-FI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH-~fp 234 (256)
T KOG3991|consen 157 MYLRLVTSGFIKSNADFYQP-FIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHH-DFP 234 (256)
T ss_pred HHHHHHHHHHHhhChhhhhc-cCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCC-cCc
Confidence 35899999999999999999 55 4 89999999877776 77899999999999999999998876655555541 111
Q ss_pred cccCCCeEEEEecCcccccccc
Q 029139 143 EKKYSERVMLIYDELHYDAVAI 164 (198)
Q Consensus 143 ~~~~~~~i~L~Y~G~HYdsl~~ 164 (198)
+ ....+|.|+|---|||.|+.
T Consensus 235 e-~s~P~I~LLYrpGHYdilY~ 255 (256)
T KOG3991|consen 235 E-ASAPEIYLLYRPGHYDILYK 255 (256)
T ss_pred c-ccCceEEEEecCCccccccC
Confidence 1 12357999999999999974
No 9
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.035 Score=51.30 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHH---HhCCeeEEEEcC
Q 029139 67 IGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILAD---YYGSEIAAYDIQ 128 (198)
Q Consensus 67 ~lR~~vA~~I~~n~~~y~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLS~---~~~~~I~v~~~~ 128 (198)
..|+++.++...+++.|+. +.-+++..|.+..+....||-.||++|+|. ....++.+-...
T Consensus 247 ~~~~~~~dq~~~e~~~~~~-~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~ 310 (371)
T KOG2605|consen 247 HNRRECVDQLKKERDFYED-YVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFK 310 (371)
T ss_pred HHHHHHHHHHhhccccccc-ccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeeccc
Confidence 5788899999999999977 888999999999999999999999999995 444444444433
No 10
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=38.12 E-value=44 Score=22.64 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=24.1
Q ss_pred hHHHhhhcCCCCccchHHHHHHHHHHhCCeeEE
Q 029139 92 NQDYCSWIQDPEKWGGAIELSILADYYGSEIAA 124 (198)
Q Consensus 92 ~~eYc~~I~~~~~WGG~iEL~aLS~~~~~~I~v 124 (198)
+++| .||++|-....--++..|++..++||.+
T Consensus 35 l~~~-~~iEeP~~~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 35 LEDY-EWIEEPLPPDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp HGGG-SEEESSSSTTSHHHHHHHHHHCSSEEEE
T ss_pred cChh-heeecCCCCCCHHHHHHHHHhCCCCEEe
Confidence 3445 7777777766667888889999999864
No 11
>PHA00616 hypothetical protein
Probab=36.42 E-value=23 Score=23.16 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=22.3
Q ss_pred eeeeccccchhhHHHHHHHHhcccccccc
Q 029139 58 CYGVCQIGVIGQKAIAATVASDTVKHSEA 86 (198)
Q Consensus 58 rC~~C~~~l~lR~~vA~~I~~n~~~y~~~ 86 (198)
+|.-||..+.=.+.....++.++++ ++.
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~-~~~ 30 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ-NKL 30 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC-Ccc
Confidence 7999999887777778888888877 553
No 12
>KOG2989 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.31 E-value=22 Score=31.39 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=12.5
Q ss_pred cccccceeeeeeccc
Q 029139 50 TDTANFTLCYGVCQI 64 (198)
Q Consensus 50 Tdt~~f~lrC~~C~~ 64 (198)
-=.+-|++||+.|+.
T Consensus 34 Rlm~Pf~~rC~tCge 48 (253)
T KOG2989|consen 34 RLMTPFRLRCNTCGE 48 (253)
T ss_pred eecccceeecccccc
Confidence 566789999999984
No 13
>PRK12301 bssS biofilm formation regulatory protein BssS; Reviewed
Probab=33.77 E-value=35 Score=25.27 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=22.3
Q ss_pred cceeecc----CCCCCCC---CCCeeeeeCChHHHHHHHHHHhh
Q 029139 9 YDALAIS----PFEGAPE---EFDQTIFPVQKDLALKLVKEQQR 45 (198)
Q Consensus 9 YD~l~~~----~~~~~~~---~~d~tif~~~~~~a~~l~~~l~~ 45 (198)
||++.+. +++..|+ ..|+|.|=+.+ .|++|...|++
T Consensus 24 YDAmmirlhyLss~~Q~~e~A~v~~tlwLTtd-vArqlI~iLea 66 (84)
T PRK12301 24 YDALMLRLHYQSPNDQEPEGAEVGQTLWLTTD-VARQFISILEA 66 (84)
T ss_pred HhhHHHhhhhcCCCCCCcccccccceEEecHH-HHHHHHHHHHH
Confidence 7888763 2222222 35778886544 68888887764
No 14
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=30.40 E-value=2.9 Score=29.62 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=19.5
Q ss_pred cccccccCCChHHHhhhcCCCCccchHHHH
Q 029139 82 KHSEAFIGKSNQDYCSWIQDPEKWGGAIEL 111 (198)
Q Consensus 82 ~y~~~~L~~~~~eYc~~I~~~~~WGG~iEL 111 (198)
.+.-.+-=+++++=+-.++++..|||.+.|
T Consensus 12 ~ls~YVpKKDLEE~Vv~~E~~~~wGG~v~L 41 (64)
T PF06988_consen 12 GLSAYVPKKDLEEPVVSMEKPELWGGEVTL 41 (64)
T ss_dssp -EEEEETTTTEEEEEEEESSSSS-SSEEEE
T ss_pred CEEEEEeCCccccceeeeeccCccCCEEEE
Confidence 443333346777777788899999997654
No 15
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=25.50 E-value=44 Score=30.66 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.6
Q ss_pred hHHHhhhcCCCCccchHHHHHHHHH
Q 029139 92 NQDYCSWIQDPEKWGGAIELSILAD 116 (198)
Q Consensus 92 ~~eYc~~I~~~~~WGG~iEL~aLS~ 116 (198)
+.+|.+||..--..+|+.||.||++
T Consensus 316 I~~~v~~iapv~v~PGE~EleALA~ 340 (358)
T COG3426 316 IEDRVSWIAPVIVYPGEDELEALAE 340 (358)
T ss_pred HHHHHhhhcceEecCCchHHHHHHh
Confidence 5788888888888899999999975
No 16
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=24.50 E-value=38 Score=23.41 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=13.0
Q ss_pred ccceeeeeeccccchh
Q 029139 53 ANFTLCYGVCQIGVIG 68 (198)
Q Consensus 53 ~~f~lrC~~C~~~l~l 68 (198)
+.|.|+|.-|+..+-+
T Consensus 28 aDikikC~gCg~~iml 43 (57)
T PF06107_consen 28 ADIKIKCLGCGRQIML 43 (57)
T ss_pred CcEEEEECCCCCEEEE
Confidence 6799999999986544
No 17
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=24.37 E-value=1.1e+02 Score=27.07 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhcCcccccccceeeeeeccc
Q 029139 34 DLALKLVKEQQRKKTYTDTANFTLCYGVCQI 64 (198)
Q Consensus 34 ~~a~~l~~~l~~~~~~Tdt~~f~lrC~~C~~ 64 (198)
+.+.++.++|+++++..-...=..-|..|+.
T Consensus 99 ~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~ 129 (319)
T cd00814 99 EIVQEFFKKLYENGYIYEGEYEGLYCVSCER 129 (319)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeECCCCCc
Confidence 3478899999999987544444456777764
No 18
>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=24.10 E-value=29 Score=27.05 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=20.7
Q ss_pred cCcccccccceeeeeeccccchhh
Q 029139 46 KKTYTDTANFTLCYGVCQIGVIGQ 69 (198)
Q Consensus 46 ~~~~Tdt~~f~lrC~~C~~~l~lR 69 (198)
++-.++++..+|+|..|+..+.+.
T Consensus 33 ~~GW~~~~~d~l~C~~C~~~l~~~ 56 (133)
T PF07967_consen 33 RRGWICVSKDMLKCESCGARLCVK 56 (133)
T ss_pred HcCCCcCCCCEEEeCCCCCEEEEe
Confidence 378899999999999999877666
No 19
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=23.75 E-value=91 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=31.4
Q ss_pred eeeeeCCh----------HHHHHHHHHHhhcCccccccccee--eeeeccccc
Q 029139 26 QTIFPVQK----------DLALKLVKEQQRKKTYTDTANFTL--CYGVCQIGV 66 (198)
Q Consensus 26 ~tif~~~~----------~~a~~l~~~l~~~~~~Tdt~~f~l--rC~~C~~~l 66 (198)
.+||..++ ..+.++...|+++-+-++..+|.| |++.|...|
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL 57 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVL 57 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeec
Confidence 45666655 248899999999998888899987 888876543
No 20
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=23.41 E-value=24 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.0
Q ss_pred CCChHHHhhhcCCCCccchHHH
Q 029139 89 GKSNQDYCSWIQDPEKWGGAIE 110 (198)
Q Consensus 89 ~~~~~eYc~~I~~~~~WGG~iE 110 (198)
=++++|=+-.++++..|||.+-
T Consensus 19 KKDLEE~Vv~~e~~~~WGG~v~ 40 (67)
T TIGR02934 19 KKDLEEVIVSVEKEELWGGWVT 40 (67)
T ss_pred CCcchhheeeeecCccccCEEE
Confidence 4688888888999999999653
No 21
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=22.18 E-value=49 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=19.7
Q ss_pred cccceeeeeeccccchhhHHHHHHHHhccccccccccCCChHHHhhhc
Q 029139 52 TANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWI 99 (198)
Q Consensus 52 t~~f~lrC~~C~~~l~lR~~vA~~I~~n~~~y~~~~L~~~~~eYc~~I 99 (198)
.....|.|.+|+...+.+ -.-|..|++-|-+||
T Consensus 42 ~~~~~~~C~~Cg~~~~~~---------------i~~L~epiDVY~~wi 74 (81)
T PF05129_consen 42 EGIGILSCRVCGESFQTK---------------INPLSEPIDVYSEWI 74 (81)
T ss_dssp TTEEEEEESSS--EEEEE-----------------SS--TTHHHHHHH
T ss_pred CCEEEEEecCCCCeEEEc---------------cCccCcccchhHHHH
Confidence 567788999995433222 124677899999987
No 22
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=22.05 E-value=39 Score=22.84 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=17.6
Q ss_pred hcCcccccccceeeeeeccccchhhHH
Q 029139 45 RKKTYTDTANFTLCYGVCQIGVIGQKA 71 (198)
Q Consensus 45 ~~~~~Tdt~~f~lrC~~C~~~l~lR~~ 71 (198)
..+-|-.-.+..++|..|+..+...+.
T Consensus 23 ~~Gfyy~~~~d~v~C~~C~~~~~~w~~ 49 (69)
T cd00022 23 EAGFYYTGRGDEVKCFFCGLELKNWEP 49 (69)
T ss_pred HcCCeEcCCCCEEEeCCCCCCccCCCC
Confidence 444443333678999999987765543
No 23
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=61 Score=31.28 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=38.6
Q ss_pred ecccccceeeccCCCCCCCCCCeeee---eCChHHHHHHHHHHhhcCcccccccceeeeeeccccc
Q 029139 4 YDGLHYDALAISPFEGAPEEFDQTIF---PVQKDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGV 66 (198)
Q Consensus 4 YsGIHYD~l~~~~~~~~~~~~d~tif---~~~~~~a~~l~~~l~~~~~~Tdt~~f~lrC~~C~~~l 66 (198)
|.||||++--.-.. ++|.--+ +..-+-++.+-.++.+++|+.-.+-=.|.|.+|..-|
T Consensus 86 yh~ihk~vy~Wf~I-----dfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fl 146 (567)
T KOG1247|consen 86 YHGIHKVVYDWFKI-----DFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFL 146 (567)
T ss_pred cchhHHHHHHhhcc-----cccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccc
Confidence 78999988644311 1222111 2222458888888999999888888888999887644
No 24
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=20.15 E-value=92 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.536 Sum_probs=25.9
Q ss_pred ChHHHhhhcCC--CCccchHHHHHHHHHHhCCeeEEEE
Q 029139 91 SNQDYCSWIQD--PEKWGGAIELSILADYYGSEIAAYD 126 (198)
Q Consensus 91 ~~~eYc~~I~~--~~~WGG~iEL~aLS~~~~~~I~v~~ 126 (198)
.++.||.|.++ |..|--.+ ..++.+++.|.+=-
T Consensus 35 ~i~~y~~W~r~~~~STW~DC~---mFA~~LkVsm~vkV 69 (104)
T PF05415_consen 35 TIKKYHTWLRKKRPSTWDDCR---MFADALKVSMQVKV 69 (104)
T ss_pred HHHHHHHHHhcCCCCcHHHHH---HHHHhheeEEEEEE
Confidence 57899999985 45897554 67999999998743
Done!