BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029140
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7I1V8|SECA_CAMHC Protein translocase subunit SecA OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=secA
PE=3 SV=1
Length = 884
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 116 KYIYK-DTLARNLAAVIYR-ENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKES 173
KYI + D +A VIYR N L A D I D + VLD+++ F GD+KE+
Sbjct: 611 KYILEYDDVANEQRKVIYRYRNELLEADFDLHDKIISNREDYIANVLDRLEIFDGDSKEN 670
Query: 174 FG--KITA-LNSTSSEESEENSKEKAK 197
F KIT+ + S ++E +EN KA+
Sbjct: 671 FDIQKITSIIKSETTEILDENKLSKAE 697
>sp|P34712|PGP1_CAEEL Multidrug resistance protein pgp-1 OS=Caenorhabditis elegans
GN=pgp-1 PE=1 SV=2
Length = 1321
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 135 NGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFGKI 177
NG+LR +L T D L D LKT + V+D+ GD +S G+I
Sbjct: 4 NGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEI 46
>sp|Q6FMI5|LYS2_CANGA L-aminoadipate-semialdehyde dehydrogenase large subunit OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=LYS2 PE=3 SV=1
Length = 1374
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRENGNLRAALSTS 145
S + G TT I V FLG +I D L R + V ++ ++RAA TS
Sbjct: 946 SEMAGPTTVNIFVTGVTGFLGSFILSDILNRTVTGVNFKIFAHVRAADETS 996
>sp|P0CAW8|CTRA_CAUCR Cell cycle transcriptional regulator CtrA OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=ctrA PE=3 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 93 PLSIITGG----TTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRENGNLRAALSTSDVI 148
P+ I++G T K D+++ K +KD + + AV+ R G+ ++ + T D++
Sbjct: 74 PIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRSKGHAQSVIKTGDIV 133
>sp|B8H358|CTRA_CAUCN Cell cycle transcriptional regulator CtrA OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=ctrA PE=3 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 93 PLSIITGG----TTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRENGNLRAALSTSDVI 148
P+ I++G T K D+++ K +KD + + AV+ R G+ ++ + T D++
Sbjct: 74 PIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRSKGHAQSVIKTGDIV 133
>sp|P38179|ALG3_YEAST Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ALG3 PE=1 SV=1
Length = 458
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 50 KGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMV 107
+G++ LQ +QF RPP ++D R+VIF AN+ + PL I+ KI++
Sbjct: 8 QGEKSLQRKQFVRPPLDLWQDLKD--GVRYVIFDCRANLIV-MPLLILFESMLCKIII 62
>sp|Q7TYA6|SYD_MYCBO Aspartate--tRNA ligase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=aspS PE=3 SV=2
Length = 609
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 116 KYIYKDTLARNLAAVIY---RENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKE 172
KY Y D + AA I R N RA L+ D +E+ TP ++ + +DF A+
Sbjct: 125 KYRYLDLRRDDPAAAIRLRSRVNAAARAVLARHDFVEIETPTITRSTPEGARDFLVPARL 184
Query: 173 SFGKITAL 180
G AL
Sbjct: 185 HPGSFYAL 192
>sp|Q50649|SYD_MYCTU Aspartate--tRNA ligase OS=Mycobacterium tuberculosis GN=aspS PE=3
SV=2
Length = 594
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 116 KYIYKDTLARNLAAVI---YRENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKE 172
KY Y D + AA I R N RA L+ D +E+ TP ++ + +DF A+
Sbjct: 125 KYRYLDLRRDDPAAAIRLRSRVNAAARAVLARHDFVEIETPTITRSTPEGARDFLVPARL 184
Query: 173 SFGKITAL 180
G AL
Sbjct: 185 HPGSFYAL 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,799,960
Number of Sequences: 539616
Number of extensions: 2936678
Number of successful extensions: 10137
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10121
Number of HSP's gapped (non-prelim): 26
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)