Query 029140
Match_columns 198
No_of_seqs 23 out of 25
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 08:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12153 CAP18_C: LPS binding 59.6 6.1 0.00013 25.3 1.4 16 154-169 13-28 (28)
2 PF03469 XH: XH domain; Inter 49.9 10 0.00023 31.0 1.7 33 89-121 42-81 (132)
3 COG3165 Uncharacterized protei 40.9 33 0.00071 30.3 3.4 88 68-167 93-185 (204)
4 PF11983 DUF3484: Domain of un 36.7 25 0.00054 25.9 1.7 17 154-170 55-71 (73)
5 PRK00073 pgk phosphoglycerate 35.3 39 0.00085 31.8 3.2 38 95-133 212-249 (389)
6 cd00318 Phosphoglycerate_kinas 35.0 43 0.00094 31.6 3.5 38 95-133 216-253 (397)
7 TIGR02096 conserved hypothetic 32.6 53 0.0012 23.4 2.9 36 142-177 22-58 (129)
8 cd01439 TCCD_inducible_PARP_li 31.9 1.7E+02 0.0038 22.6 5.8 23 72-98 97-120 (121)
9 KOG0886 40S ribosomal protein 29.8 55 0.0012 28.2 3.0 22 65-88 1-22 (167)
10 PLN02282 phosphoglycerate kina 29.7 50 0.0011 31.3 2.9 38 95-133 219-256 (401)
11 PLN03034 phosphoglycerate kina 27.0 75 0.0016 31.1 3.6 38 95-133 294-331 (481)
12 TIGR03505 FimV_core FimV N-ter 23.4 72 0.0016 23.4 2.2 32 126-158 20-57 (74)
13 COG0126 Pgk 3-phosphoglycerate 23.3 1.6E+02 0.0035 28.3 5.0 38 95-133 218-255 (395)
14 PF03887 YfbU: YfbU domain; I 22.9 56 0.0012 27.4 1.8 33 146-179 49-81 (166)
15 PF07696 7TMR-DISMED2: 7TMR-DI 22.7 84 0.0018 22.8 2.5 29 70-98 111-140 (141)
16 PF00162 PGK: Phosphoglycerate 20.4 64 0.0014 30.3 1.8 39 95-133 216-254 (384)
No 1
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=59.61 E-value=6.1 Score=25.26 Aligned_cols=16 Identities=56% Similarity=1.036 Sum_probs=13.5
Q ss_pred ccchhHHHHHHHHHHH
Q 029140 154 DKLKTVLDKVKDFFGD 169 (198)
Q Consensus 154 eeLkTv~Dkvkdff~~ 169 (198)
|.|+.+..++||||++
T Consensus 13 eklkkIGQkIKDff~~ 28 (28)
T PF12153_consen 13 EKLKKIGQKIKDFFGN 28 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5678899999999974
No 2
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=49.94 E-value=10 Score=31.04 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.3
Q ss_pred eeeeeeeeeec-chHHHHH------HHhhhhhhhHHHHHH
Q 029140 89 YLWYPLSIITG-GTTAKIM------VAAKDNFLGKYIYKD 121 (198)
Q Consensus 89 ~~WyPLsiVtG-GttAnim------V~a~dn~lgk~iY~~ 121 (198)
+.|+|.-||++ |..-.++ +..|+.+||-.+|.-
T Consensus 42 p~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~a 81 (132)
T PF03469_consen 42 PEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYNA 81 (132)
T ss_pred CCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHHH
Confidence 68999999986 5555555 789999999999963
No 3
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.93 E-value=33 Score=30.31 Aligned_cols=88 Identities=19% Similarity=0.092 Sum_probs=58.9
Q ss_pred CCCCCCCCCCeEEE----EEEeecceeeeeeeeeecchHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhccccccccc
Q 029140 68 LPKIEDDGNPRFVI----FIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYK-DTLARNLAAVIYRENGNLRAAL 142 (198)
Q Consensus 68 lP~id~D~N~~FVI----FIR~~nv~~WyPLsiVtGGttAnimV~a~dn~lgk~iY~-~TL~rNIaavIYkd~~n~rsal 142 (198)
.+.|+=||..++++ -+|++..-.=++|+.++|-..|..++.+++.-.+---++ +.+.+|+|..|=
T Consensus 93 ~g~l~veGD~q~~q~l~~Ll~~~e~D~ae~Lsr~~Gdv~A~~~~~~l~~~~~~l~~~~~~~q~~~Ae~iT---------- 162 (204)
T COG3165 93 SGELEVEGDIQLAQNLVALLGSLEPDPAELLSRYFGDVAAQSVVRALRSGSRFLKHGLKQLQRNLAEAIT---------- 162 (204)
T ss_pred CCceeecchHHHHHHHHHHHHhcCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 46666566655543 223333333378999999999999999998765443333 678999999885
Q ss_pred ccCCeeecCCcccchhHHHHHHHHH
Q 029140 143 STSDVIELPTPDKLKTVLDKVKDFF 167 (198)
Q Consensus 143 ~~~~v~~iP~~eeLkTv~Dkvkdff 167 (198)
+.=-.+|++.|+.--.|.|..-=
T Consensus 163 --EE~r~~v~~~ela~f~~evd~lr 185 (204)
T COG3165 163 --EEWRMAVGPLELADFAEEVDALR 185 (204)
T ss_pred --chhhccCChHHHHHHHHHHHHHH
Confidence 22335788888877666665443
No 4
>PF11983 DUF3484: Domain of unknown function (DUF3484); InterPro: IPR021873 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains []. This C-terminal domain is found in FtsA from Firmicutes (Gram-positive bacteria). It is typically between 65 to 81 amino acids in length.
Probab=36.71 E-value=25 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=13.6
Q ss_pred ccchhHHHHHHHHHHHH
Q 029140 154 DKLKTVLDKVKDFFGDA 170 (198)
Q Consensus 154 eeLkTv~Dkvkdff~~~ 170 (198)
|+=+.+.|+||.|||+|
T Consensus 55 e~k~kltdRvR~~fgsm 71 (73)
T PF11983_consen 55 EPKEKLTDRVRGFFGSM 71 (73)
T ss_pred ccCCcHHHHHHHHHhhh
Confidence 33377899999999985
No 5
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=35.25 E-value=39 Score=31.83 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=30.8
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|++||-.||+..+|.--+.|+.++...++. .|..|.+
T Consensus 212 ~liigG~ma~tFl~A~G~~ig~sl~e~~~i~-~a~~il~ 249 (389)
T PRK00073 212 KLIIGGGMANTFLKAQGYNVGKSLVEEDLID-TAKELLE 249 (389)
T ss_pred hheeChHHHHHHHHHcCCCcChhhcchhhHH-HHHHHHH
Confidence 5899999999999999999999999876654 4444544
No 6
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=35.04 E-value=43 Score=31.63 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.6
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|++||-.||+..+|.--+.|+.++...... +|..|.+
T Consensus 216 ~liigG~ma~tFL~A~G~~iG~sl~e~~~i~-~a~~il~ 253 (397)
T cd00318 216 YLIIGGGMAFTFLKAQGMDIGKSLFEEDGIE-LAKSLLE 253 (397)
T ss_pred EEEECcHHHHHHHHHcCCCcCccccChhhHH-HHHHHHH
Confidence 5899999999999999999999999886654 3444444
No 7
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=32.60 E-value=53 Score=23.36 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=25.2
Q ss_pred cccCC-eeecCCcccchhHHHHHHHHHHHHHHhhchh
Q 029140 142 LSTSD-VIELPTPDKLKTVLDKVKDFFGDAKESFGKI 177 (198)
Q Consensus 142 l~~~~-v~~iP~~eeLkTv~Dkvkdff~~~kesFg~~ 177 (198)
+.+.| ++..|.........+.+++||..+.+.|...
T Consensus 22 ~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 58 (129)
T TIGR02096 22 LLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDL 58 (129)
T ss_pred hcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchh
Confidence 44555 5566766555556888999999988777654
No 8
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=31.90 E-value=1.7e+02 Score=22.57 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=15.5
Q ss_pred CCCCCC-eEEEEEEeecceeeeeeeeee
Q 029140 72 EDDGNP-RFVIFIRMANVYLWYPLSIIT 98 (198)
Q Consensus 72 d~D~N~-~FVIFIR~~nv~~WyPLsiVt 98 (198)
|+..|| .||||=. .+=||.-+||
T Consensus 97 d~~~~p~~~Vvf~~----~q~yPeYlI~ 120 (121)
T cd01439 97 DNVSNPSIFVIFSD----VQAYPEYLIT 120 (121)
T ss_pred CCCCCCCEEEEEeC----CccceeEEEE
Confidence 333456 7888866 5677877775
No 9
>KOG0886 consensus 40S ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=29.82 E-value=55 Score=28.16 Aligned_cols=22 Identities=27% Similarity=0.467 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCeEEEEEEeecc
Q 029140 65 PPSLPKIEDDGNPRFVIFIRMANV 88 (198)
Q Consensus 65 ~p~lP~id~D~N~~FVIFIR~~nv 88 (198)
||+.|++|| |+-=+||.|+...
T Consensus 1 mp~~pkfdP--~eiK~vylrc~Gg 22 (167)
T KOG0886|consen 1 MPPKPKFDP--NEIKVVYLRCTGG 22 (167)
T ss_pred CCCCCCCCc--cceEEEEEEeecC
Confidence 678899988 7888999998643
No 10
>PLN02282 phosphoglycerate kinase
Probab=29.65 E-value=50 Score=31.34 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.4
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|++||-.|++..+|.--+.|+.++.+.++.- |.-|+.
T Consensus 219 ~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~-a~~il~ 256 (401)
T PLN02282 219 ILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDL-ATSLIE 256 (401)
T ss_pred hheeccHHHHHHHHHcCCCcChhhcChhhHHH-HHHHHH
Confidence 58999999999999999999999998866543 444444
No 11
>PLN03034 phosphoglycerate kinase; Provisional
Probab=26.96 E-value=75 Score=31.09 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=31.4
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|++||-.|++..+|+--..|+.++.+.+. ..|.-|++
T Consensus 294 ~lliGG~ma~tFl~A~G~~IG~slvE~d~i-~~A~~il~ 331 (481)
T PLN03034 294 ILLLGGGMIFTFYKAQGLSVGSSLVEEDKL-ELATSLLA 331 (481)
T ss_pred EEEECcHHHHHHHHHcCCCcchhhcChhhh-HHHHHHHH
Confidence 589999999999999999999999988775 44555554
No 12
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=23.41 E-value=72 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.620 Sum_probs=23.5
Q ss_pred HHHHHHHh------cccccccccccCCeeecCCcccchh
Q 029140 126 NLAAVIYR------ENGNLRAALSTSDVIELPTPDKLKT 158 (198)
Q Consensus 126 NIaavIYk------d~~n~rsal~~~~v~~iP~~eeLkT 158 (198)
+...+||+ ..+|+.. |.+..+..||+.+++..
T Consensus 20 q~m~ai~~aNp~AF~~~nin~-L~~G~~L~iP~~~~i~~ 57 (74)
T TIGR03505 20 QMMLALYRANPDAFIGGNINR-LKVGQILRIPSEEEIQA 57 (74)
T ss_pred HHHHHHHHHCHHhHhcCChhh-cCCCCEEeCCCHHHHhh
Confidence 44456777 3456654 89999999999999943
No 13
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=23.34 E-value=1.6e+02 Score=28.35 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=32.7
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|++||-.||+.++|.--+.|+-+++.-+... |..|-.
T Consensus 218 ~liigGgma~tFl~A~G~~vG~sl~E~~~~~~-Ak~ll~ 255 (395)
T COG0126 218 KLIIGGGMANTFLKAQGYDVGKSLVEFDLIDG-AKELLE 255 (395)
T ss_pred eEEecchHHHHHHHHhccccchHHHHHHHHHH-HHHHHH
Confidence 68999999999999999999999999988877 555443
No 14
>PF03887 YfbU: YfbU domain; InterPro: IPR005587 This presumed family is about 160 residues long. In Q9EUM2 from SWISSPROT it is associated with a helix-turn-helix domain. This suggests that this may be a ligand-binding family.; PDB: 1WPB_J.
Probab=22.94 E-value=56 Score=27.41 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=24.3
Q ss_pred CeeecCCcccchhHHHHHHHHHHHHHHhhchhcc
Q 029140 146 DVIELPTPDKLKTVLDKVKDFFGDAKESFGKITA 179 (198)
Q Consensus 146 ~v~~iP~~eeLkTv~Dkvkdff~~~kesFg~~~~ 179 (198)
+.....|+++|++|+|= =|+|..+..|++.++.
T Consensus 49 ~~~~~lse~~c~~ViDI-LeMy~~l~~Sy~~L~~ 81 (166)
T PF03887_consen 49 KEFEELSEEDCRFVIDI-LEMYRALQESYNNLSD 81 (166)
T ss_dssp TT-----HHHHHHHHHH-HHHHHHHHHHHHTSSS
T ss_pred hhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33457788999999995 5899999999999877
No 15
>PF07696 7TMR-DISMED2: 7TMR-DISM extracellular 2; InterPro: IPR011622 This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins []. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives [].; PDB: 2XBZ_B 3JYB_A.
Probab=22.71 E-value=84 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCCCCCCCeEEEEEEeec-ceeeeeeeeee
Q 029140 70 KIEDDGNPRFVIFIRMAN-VYLWYPLSIIT 98 (198)
Q Consensus 70 ~id~D~N~~FVIFIR~~n-v~~WyPLsiVt 98 (198)
+|+.+.+..-.||||... .+.++|+.+.+
T Consensus 111 ~~~l~~~~~~~~yirv~s~~~~~~p~~l~s 140 (141)
T PF07696_consen 111 PLTLPPGETYTLYIRVKSNGPLNFPLRLWS 140 (141)
T ss_dssp EE---SSS-EEEEEEEEESS-EEEE-----
T ss_pred EEEeCCCCEEEEEEEEEcCCcccccccccC
Confidence 444344778899999994 67999988754
No 16
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=20.43 E-value=64 Score=30.27 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.6
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|+.||-.||+..+|.--++|+.++........-..+-+
T Consensus 216 ~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~ 254 (384)
T PF00162_consen 216 KLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEK 254 (384)
T ss_dssp EEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHH
T ss_pred HHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHH
Confidence 589999999999999999999998888665444333333
Done!