Query 029140
Match_columns 198
No_of_seqs 23 out of 25
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 13:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fcg_F Cationic, antibacterial 77.9 1 3.5E-05 27.5 1.6 17 154-170 3-19 (26)
2 2k6o_A Cathelicidin antimicrob 61.5 3.6 0.00012 26.9 1.5 17 154-170 15-31 (37)
3 1eze_A Cholesteryl ester trans 58.3 4.9 0.00017 26.1 1.8 16 157-172 16-31 (38)
4 1vkk_A GMF-gamma, GLIA maturat 37.7 88 0.003 23.8 6.3 66 74-166 75-153 (154)
5 3hx8_A MLR2180 protein, putati 31.0 29 0.00098 23.0 2.2 32 141-172 29-60 (129)
6 1h2c_A Matrix protein VP40; vi 29.6 33 0.0011 27.5 2.7 24 85-108 35-64 (140)
7 1paq_A Translation initiation 28.9 73 0.0025 25.1 4.6 71 97-172 103-179 (189)
8 3mlq_A DNA-directed RNA polyme 28.2 23 0.00078 28.9 1.6 60 104-169 119-181 (188)
9 1wpb_A Hypothetical protein YF 22.9 38 0.0013 27.5 2.0 31 146-178 58-88 (172)
10 3er7_A Uncharacterized NTF2-li 22.4 24 0.00082 26.2 0.6 39 141-180 30-68 (131)
No 1
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=77.85 E-value=1 Score=27.52 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=14.7
Q ss_pred ccchhHHHHHHHHHHHH
Q 029140 154 DKLKTVLDKVKDFFGDA 170 (198)
Q Consensus 154 eeLkTv~Dkvkdff~~~ 170 (198)
++++.+..++||||+++
T Consensus 3 ~~~kkIgQkIkdFf~~l 19 (26)
T 2fcg_F 3 KEFKRIVQRIKDFLRNL 19 (26)
T ss_dssp CSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 57889999999999874
No 2
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=61.51 E-value=3.6 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=14.3
Q ss_pred ccchhHHHHHHHHHHHH
Q 029140 154 DKLKTVLDKVKDFFGDA 170 (198)
Q Consensus 154 eeLkTv~Dkvkdff~~~ 170 (198)
++|+.+..++||||+++
T Consensus 15 ~~~kkIgQkIKdFf~~l 31 (37)
T 2k6o_A 15 KEFKRIVQRIKDFLRNL 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46788899999999985
No 3
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=58.27 E-value=4.9 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 029140 157 KTVLDKVKDFFGDAKE 172 (198)
Q Consensus 157 kTv~Dkvkdff~~~ke 172 (198)
.|+.||+|++|.+++.
T Consensus 16 ~tl~eK~k~~~~~i~~ 31 (38)
T 1eze_A 16 NTLEDKAWEVINRIKQ 31 (38)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4455555555555443
No 4
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=37.67 E-value=88 Score=23.80 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=39.5
Q ss_pred CCCCeEEEEE----------Eeecce-eeeeeeeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccccccc
Q 029140 74 DGNPRFVIFI----------RMANVY-LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRENGNLRAAL 142 (198)
Q Consensus 74 D~N~~FVIFI----------R~~nv~-~WyPLsiVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYkd~~n~rsal 142 (198)
++.|+|++|- |++=++ .|.|=+ -..-.++|.++-++.+-+.+ + |
T Consensus 75 ~~~pRY~vy~~~~~~~~g~~~~klvFI~w~P~~---a~vk~KMlYAssk~~l~~~l---------g--i----------- 129 (154)
T 1vkk_A 75 ERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVG---CKPEQQMMYAGSKNRLVQTA---------E--L----------- 129 (154)
T ss_dssp SSSCEEEEEECCEECTTSCEECCEEEEEECCTT---SCHHHHHHHHHHHHHHHHHT---------T--C-----------
T ss_pred CCCcEEEEEEeeeccCCCcccccEEEEEECCCC---CChhhhhhhHhhHHHHHHhh---------C--c-----------
Confidence 4589999983 444344 899972 34555666665554443332 1 1
Q ss_pred ccCCeeecCCcccc--hhHHHHHHHH
Q 029140 143 STSDVIELPTPDKL--KTVLDKVKDF 166 (198)
Q Consensus 143 ~~~~v~~iP~~eeL--kTv~Dkvkdf 166 (198)
.-.+++=.++|| +.+.++|..|
T Consensus 130 --~~~iea~d~~El~~e~i~~kl~kf 153 (154)
T 1vkk_A 130 --TKVFEIRTTDDLTETWLKEKLAFF 153 (154)
T ss_dssp --CCEEEESSGGGCCHHHHHHHHHTT
T ss_pred --eEEEEECChHhCCHHHHHHHHhhc
Confidence 124556667787 6688888765
No 5
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=31.03 E-value=29 Score=23.01 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=23.5
Q ss_pred ccccCCeeecCCcccchhHHHHHHHHHHHHHH
Q 029140 141 ALSTSDVIELPTPDKLKTVLDKVKDFFGDAKE 172 (198)
Q Consensus 141 al~~~~v~~iP~~eeLkTv~Dkvkdff~~~ke 172 (198)
.++++|++.+|+....-...|.+.+||..+.+
T Consensus 29 ~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~ 60 (129)
T 3hx8_A 29 SKYMDDAAAFPPDMARVDGRQNIQKLWQGAMD 60 (129)
T ss_dssp TTEEEEEEEECTTSCCEESHHHHHHHHHHHHH
T ss_pred HhhCCCeEEeCCCCCcccCHHHHHHHHHHHHh
Confidence 47788888888755444567889999987655
No 6
>1h2c_A Matrix protein VP40; virus/viral protein, filovirus, ebola virus, matrix protein VP40, assembly, budding; 1.6A {Ebola virus} SCOP: b.31.1.1
Probab=29.64 E-value=33 Score=27.48 Aligned_cols=24 Identities=42% Similarity=0.761 Sum_probs=18.3
Q ss_pred eecceeeeeeeeeec------chHHHHHHH
Q 029140 85 MANVYLWYPLSIITG------GTTAKIMVA 108 (198)
Q Consensus 85 ~~nv~~WyPLsiVtG------GttAnimV~ 108 (198)
++.++.|.||.|..- -|+|-+|.+
T Consensus 35 ~K~iP~WLPLGi~~~~~Y~~~~T~AAi~~~ 64 (140)
T 1h2c_A 35 MKQIPIWLPLGVADQKTYSFDSTTAAIMLA 64 (140)
T ss_dssp EEEEEEEEEEEEECSSSSCHHHHHHHHHHS
T ss_pred hccCceeeecccccccccchHHHHHHHHhc
Confidence 578899999999875 366666654
No 7
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=28.86 E-value=73 Score=25.08 Aligned_cols=71 Identities=7% Similarity=-0.002 Sum_probs=44.8
Q ss_pred eecchHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHh----cccccccccccCCeeecCCcccchhHHHHHHHHHHHH
Q 029140 97 ITGGTTAKIMVAAKDNFLG--KYIYKDTLARNLAAVIYR----ENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDA 170 (198)
Q Consensus 97 VtGGttAnimV~a~dn~lg--k~iY~~TL~rNIaavIYk----d~~n~rsal~~~~v~~iP~~eeLkTv~Dkvkdff~~~ 170 (198)
+++.-.=.-++.|+..+.+ ..-...++...|-..+|. +.+.+-.|+...+ ++. +...+..+++.|+.=|
T Consensus 103 ~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~----~~~-~~~~v~~~~~~Fi~WL 177 (189)
T 1paq_A 103 AFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVS----TDP-RYDEVKKLTVKWVEWL 177 (189)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCC----CCG-GGHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCC----chH-HHHHHHHHHHHHHHHH
Confidence 3343333445555555554 222223455667778887 7788888987654 233 5667889999999888
Q ss_pred HH
Q 029140 171 KE 172 (198)
Q Consensus 171 ke 172 (198)
++
T Consensus 178 ~e 179 (189)
T 1paq_A 178 QN 179 (189)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 8
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=28.20 E-value=23 Score=28.92 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=41.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccccccccccCCeeecCCcccc---hhHHHHHHHHHHH
Q 029140 104 KIMVAAKDNFLGKYIYKDTLARNLAAVIYRENGNLRAALSTSDVIELPTPDKL---KTVLDKVKDFFGD 169 (198)
Q Consensus 104 nimV~a~dn~lgk~iY~~TL~rNIaavIYkd~~n~rsal~~~~v~~iP~~eeL---kTv~Dkvkdff~~ 169 (198)
+.+|.=..-..| .-|..++..++.+=..++|+-|+..++..| ++-.| +.+...+|+||++
T Consensus 119 RVIVsQe~r~~g-----ell~~q~r~gl~r~ek~~~e~~~~~~~~~~-~~~~l~n~kp~~~~ik~ff~s 181 (188)
T 3mlq_A 119 RVIVSQGGRTVG-----ELMADQFRVGLARLARGVRERMVMGSPDTL-TPAKLVNSRPLEAALREFFSR 181 (188)
T ss_dssp EECCCCSSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCGGGC-CHHHHCCCHHHHHHHHHHHHT
T ss_pred EEEEEeecccCC-----eeeEEehhhHHHHHHHHHHhhhcccccccc-CcccchhhHHHHHHHHHhhcc
Confidence 344444444444 445667777778877888888888887666 44444 8899999999986
No 9
>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein initiative, PSI, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: a.233.1.1
Probab=22.90 E-value=38 Score=27.51 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=26.0
Q ss_pred CeeecCCcccchhHHHHHHHHHHHHHHhhchhc
Q 029140 146 DVIELPTPDKLKTVLDKVKDFFGDAKESFGKIT 178 (198)
Q Consensus 146 ~v~~iP~~eeLkTv~Dkvkdff~~~kesFg~~~ 178 (198)
+.-. +|+++|++|+|= =|+|..+..|++.++
T Consensus 58 ~~~~-lse~~c~~V~DI-LeMy~~l~~Sy~~L~ 88 (172)
T 1wpb_A 58 EFGE-LKEETCRTIIDI-MEMYHALHVSWSNLQ 88 (172)
T ss_dssp TCCC-CCHHHHHHHHHH-HHHHHHHHHHHHTCS
T ss_pred ccCC-CCHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 4433 799999999995 589999999999887
No 10
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=22.39 E-value=24 Score=26.23 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=31.7
Q ss_pred ccccCCeeecCCcccchhHHHHHHHHHHHHHHhhchhccC
Q 029140 141 ALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFGKITAL 180 (198)
Q Consensus 141 al~~~~v~~iP~~eeLkTv~Dkvkdff~~~kesFg~~~~l 180 (198)
.|++.|.+. |.+.+--++.+.++.||..+-+.|..+.-+
T Consensus 30 ~Lfa~Dav~-~~~~~~~~G~~ai~~F~~~~~~a~~~~~~~ 68 (131)
T 3er7_A 30 SLFSDEITF-VLNGQEQHGIDAWKQFVRMVFTANQDIKHM 68 (131)
T ss_dssp HTEEEEEEE-EETTEEEESHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHhCCCeEe-cCCCCCcCChHHHHHHHHHHHhhCcCceEE
Confidence 588899888 766555579999999999998999887643
Done!