Query 029140
Match_columns 198
No_of_seqs 23 out of 25
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 13:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029140.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029140hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mxha_ c.2.1.2 (A:) Dihydropt 52.5 8.3 0.0006 27.7 4.4 35 146-180 53-88 (266)
2 d2a4ka1 c.2.1.2 (A:2-242) beta 45.5 1.7 0.00012 32.7 -0.5 27 153-180 57-83 (241)
3 d1phpa_ c.86.1.1 (A:) Phosphog 39.9 4.4 0.00032 34.2 1.2 31 95-125 214-244 (394)
4 d1yuaa2 g.41.3.3 (A:66-122) Pr 36.7 7.8 0.00057 25.5 1.8 20 68-87 9-28 (57)
5 d3d9ra1 d.17.4.27 (A:3-134) Un 35.1 13 0.00093 23.7 2.7 43 134-176 22-66 (132)
6 d1vpea_ c.86.1.1 (A:) Phosphog 32.3 6.8 0.00049 33.0 1.2 38 95-133 213-250 (398)
7 d1h2ca_ b.31.1.1 (A:) EV matri 29.2 16 0.0012 27.0 2.7 24 85-108 21-50 (125)
8 d1xwma_ a.7.12.1 (A:) Phosphat 28.3 39 0.0029 23.7 4.7 44 123-176 93-136 (212)
9 d1v6sa_ c.86.1.1 (A:) Phosphog 27.7 10 0.00073 31.9 1.4 38 95-133 211-248 (390)
10 d1j2qh_ d.153.1.4 (H:) Proteas 24.7 56 0.004 22.7 4.9 69 95-164 125-201 (202)
11 d1dgsa1 a.60.2.2 (A:401-581) N 22.1 20 0.0014 26.6 2.0 67 106-177 95-171 (181)
12 d16pka_ c.86.1.1 (A:) Phosphog 22.0 17 0.0013 30.5 1.9 31 95-125 232-262 (415)
13 d1oh0a_ d.17.4.3 (A:) Delta-5- 21.7 23 0.0017 22.4 2.1 44 134-178 22-66 (125)
No 1
>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}
Probab=52.48 E-value=8.3 Score=27.71 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=25.5
Q ss_pred CeeecCCcccc-hhHHHHHHHHHHHHHHhhchhccC
Q 029140 146 DVIELPTPDKL-KTVLDKVKDFFGDAKESFGKITAL 180 (198)
Q Consensus 146 ~v~~iP~~eeL-kTv~Dkvkdff~~~kesFg~~~~l 180 (198)
+++.++..... .+..|.++++|..+.+.||.|-.|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iDil 88 (266)
T d1mxha_ 53 SAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVL 88 (266)
T ss_dssp CEEEEECCCSSSTTHHHHHHHHHHHHHHHHSCCCEE
T ss_pred ceEEEecccccchhHHHHHHHHHHHHHHHhCCCCEE
Confidence 44444433332 567789999999999999999887
No 2
>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}
Probab=45.54 E-value=1.7 Score=32.73 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred cccchhHHHHHHHHHHHHHHhhchhccC
Q 029140 153 PDKLKTVLDKVKDFFGDAKESFGKITAL 180 (198)
Q Consensus 153 ~eeLkTv~Dkvkdff~~~kesFg~~~~l 180 (198)
+-||. =-+.++++|..+.+.||.+..|
T Consensus 57 ~~Dls-~~~~i~~~~~~i~~~~g~iDiL 83 (241)
T d2a4ka1 57 VADVS-DPKAVEAVFAEALEEFGRLHGV 83 (241)
T ss_dssp ECCTT-SHHHHHHHHHHHHHHHSCCCEE
T ss_pred EecCC-CHHHHHHHHHHHHHHhCCccEe
Confidence 34662 3467889999999999988765
No 3
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=39.86 E-value=4.4 Score=34.21 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.9
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHH
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLAR 125 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~r 125 (198)
.|+.||-.||++.+|+..+.|+-++......
T Consensus 214 ~i~igG~mantfl~a~G~~iG~sl~e~~~~~ 244 (394)
T d1phpa_ 214 NLIIGGGLAYTFVKALGHDVGKSLLEEDKIE 244 (394)
T ss_dssp EEEECTTHHHHHHHHTTCCCTTSCCCGGGHH
T ss_pred eEEEcchHHHHHHHHcCCccCcccccchhHH
Confidence 4889999999999999999999888875543
No 4
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=36.71 E-value=7.8 Score=25.47 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.7
Q ss_pred CCCCCCCCCCeEEEEEEeec
Q 029140 68 LPKIEDDGNPRFVIFIRMAN 87 (198)
Q Consensus 68 lP~id~D~N~~FVIFIR~~n 87 (198)
-|.-||||||-+|=|-|--+
T Consensus 9 AP~~D~dGn~~vvRfsRK~k 28 (57)
T d1yuaa2 9 APQQDPEGNKTMVRFSRKTK 28 (57)
T ss_dssp SCSSCTTCCCEEEEEETTTT
T ss_pred CCccCCCCCEeEEEEecCCC
Confidence 47889999999999988654
No 5
>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=35.11 E-value=13 Score=23.67 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=30.1
Q ss_pred ccccccc--ccccCCeeecCCcccchhHHHHHHHHHHHHHHhhch
Q 029140 134 ENGNLRA--ALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFGK 176 (198)
Q Consensus 134 d~~n~rs--al~~~~v~~iP~~eeLkTv~Dkvkdff~~~kesFg~ 176 (198)
+.+++.. .++++|.+.+|+..+.-+.-|.+.++|..+.+++..
T Consensus 22 ~~~D~~~~~~l~t~Dav~~~~~~~~~~G~~~i~~~~~~~~~~~~~ 66 (132)
T d3d9ra1 22 NRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGF 66 (132)
T ss_dssp HTTCHHHHHHTEEEEEEEECTTSCCEESHHHHHHHHHHHHHHEEE
T ss_pred HcCCHHHHHHhcCCCeEEEccCCcceehHHHHHHHHHHHhhcCCc
Confidence 4444443 467789888887777666788999988886666543
No 6
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}
Probab=32.34 E-value=6.8 Score=33.04 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=30.0
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|+.||-.||++++|.....|+-+|..... +++..|+.
T Consensus 213 ~iiigG~~antfL~a~G~~iG~sl~e~~~~-~~~~~i~~ 250 (398)
T d1vpea_ 213 RILIGGAMMFTFLKALGKEVGSSRVEEDKI-DLAKELVE 250 (398)
T ss_dssp EEEECTTTHHHHHHHTSCCCTTSCCCGGGH-HHHHHHHH
T ss_pred eeeecchHHHHHHHHcCCCCCCCccchhhh-HHHHHHHH
Confidence 488999999999999999999998876544 44444544
No 7
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=29.15 E-value=16 Score=26.99 Aligned_cols=24 Identities=42% Similarity=0.761 Sum_probs=18.3
Q ss_pred eecceeeeeeeeeec------chHHHHHHH
Q 029140 85 MANVYLWYPLSIITG------GTTAKIMVA 108 (198)
Q Consensus 85 ~~nv~~WyPLsiVtG------GttAnimV~ 108 (198)
++.++.|.||.|..- -|+|-+|.+
T Consensus 21 ~k~ip~wlplgi~~~~~y~~~~t~aa~~~~ 50 (125)
T d1h2ca_ 21 MKQIPIWLPLGVADQKTYSFDSTTAAIMLA 50 (125)
T ss_dssp EEEEEEEEEEEEECSSSSCHHHHHHHHHHS
T ss_pred hccCceeeecccccccccchHHHHHHHHhc
Confidence 578899999999875 366666654
No 8
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.25 E-value=39 Score=23.73 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcccccccccccCCeeecCCcccchhHHHHHHHHHHHHHHhhch
Q 029140 123 LARNLAAVIYRENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFGK 176 (198)
Q Consensus 123 L~rNIaavIYkd~~n~rsal~~~~v~~iP~~eeLkTv~Dkvkdff~~~kesFg~ 176 (198)
++.|||..+++-++++. .++.++|....+.+.++|+++.++|-+
T Consensus 93 ~a~~Ia~~~~~~~~~~~----------~~~~~~l~~m~~~~~~~~~~ai~a~~~ 136 (212)
T d1xwma_ 93 FAVNIAKACIRIGGQPF----------VMDIGPLVLMYRLATDMVSTAIAAYDR 136 (212)
T ss_dssp HHHHHHHHHHHTTTSCC----------SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC----------CccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766655333322 133467899999999999999999865
No 9
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}
Probab=27.68 E-value=10 Score=31.88 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYR 133 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~rNIaavIYk 133 (198)
.|+.||-.||+.++|.....|+-++..... +.+.-|++
T Consensus 211 ~iiigG~mAntFL~a~G~~IG~sl~e~~~~-~~~~~~~~ 248 (390)
T d1v6sa_ 211 RLLIGGAMAFTFLKALGGEVGRSLVEEDRL-DLAKDLLG 248 (390)
T ss_dssp EEEECSTTHHHHHHHTTCBCTTCCCCGGGH-HHHHHHHH
T ss_pred eeeecccHHHHHHHHcCCccCcchhhhhhh-hhhHhHHH
Confidence 589999999999999999999988876644 34444444
No 10
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.68 E-value=56 Score=22.70 Aligned_cols=69 Identities=12% Similarity=0.312 Sum_probs=38.2
Q ss_pred eeeecchHHHHHHHhhhhhhhHHH----HHHHHHHHHHHHHHhcc---cccccc-cccCCeeecCCcccchhHHHHHH
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYI----YKDTLARNLAAVIYREN---GNLRAA-LSTSDVIELPTPDKLKTVLDKVK 164 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~i----Y~~TL~rNIaavIYkd~---~n~rsa-l~~~~v~~iP~~eeLkTv~Dkvk 164 (198)
+.+..|+-+.+....++..|-..| ..+.+.+=|..++++|. ++++=+ +....+..+ ++||++..+++|+
T Consensus 125 ~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~~~al~~~~~~d~~~g~~v~v~~i~~~g~~~~-~~~ei~~~l~~~~ 201 (202)
T d1j2qh_ 125 DIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQY-SPEEVEQILAKFR 201 (202)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEEC-HHHHHHHHGGGTT
T ss_pred ceEEccCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCEEEe-CHHHHHHHHHHhh
Confidence 466777777777777777664333 33333333445555554 333333 333345444 5667777777664
No 11
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=22.08 E-value=20 Score=26.58 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=43.8
Q ss_pred HHHhhhhhhhHHHHH-------HHHHHHHHHHHHhcccccccccccCCeeecCCcccc-hhHHHHHHHHHHH--HHHhhc
Q 029140 106 MVAAKDNFLGKYIYK-------DTLARNLAAVIYRENGNLRAALSTSDVIELPTPDKL-KTVLDKVKDFFGD--AKESFG 175 (198)
Q Consensus 106 mV~a~dn~lgk~iY~-------~TL~rNIaavIYkd~~n~rsal~~~~v~~iP~~eeL-kTv~Dkvkdff~~--~kesFg 175 (198)
+-++++.++.|.||. .+.++.|++. |.+-+++..+ +.+++..| +.+ ..+++.+.+||.+ -.+...
T Consensus 95 Ie~sk~~~l~r~l~aLGI~~vG~~~Ak~La~~-f~sl~~l~~a-s~eeL~~I---~GIG~~~A~si~~ff~~~~n~~~i~ 169 (181)
T d1dgsa1 95 IEESKHRGLERLLYALGLPGVGEVLARNLARR-FGTMDRLLEA-SLEELIEV---EEVGELTARAILETLKDPAFRDLVR 169 (181)
T ss_dssp HHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHT-TSBHHHHTTC-CHHHHHTS---TTCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHhhhhhHHHHHHHHHH-hhhhhhhhhh-HHHHHhhc---CCcCHHHHHHHHHHHCCHHHHHHHH
Confidence 345667788899984 6777888876 6655555542 22344443 456 7889999999987 344444
Q ss_pred hh
Q 029140 176 KI 177 (198)
Q Consensus 176 ~~ 177 (198)
++
T Consensus 170 ~L 171 (181)
T d1dgsa1 170 RL 171 (181)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 12
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]}
Probab=22.00 E-value=17 Score=30.46 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.7
Q ss_pred eeeecchHHHHHHHhhhhhhhHHHHHHHHHH
Q 029140 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLAR 125 (198)
Q Consensus 95 siVtGGttAnimV~a~dn~lgk~iY~~TL~r 125 (198)
.|+.||-.||+.++|.--+.|+-++......
T Consensus 232 ~iligG~~antfL~a~G~~iG~sl~e~~~~~ 262 (415)
T d16pka_ 232 YLLIGGAMAYTFLKAQGYSIGKSKCEESKLE 262 (415)
T ss_dssp EEEECTTHHHHHHHHHTCCCTTCCCCGGGHH
T ss_pred eeeecchHHHHHHHHcCCcccccchhhhhhh
Confidence 5899999999999999999999888765543
No 13
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=21.68 E-value=23 Score=22.37 Aligned_cols=44 Identities=5% Similarity=-0.031 Sum_probs=30.7
Q ss_pred cccccccccccCCeeecCC-cccchhHHHHHHHHHHHHHHhhchhc
Q 029140 134 ENGNLRAALSTSDVIELPT-PDKLKTVLDKVKDFFGDAKESFGKIT 178 (198)
Q Consensus 134 d~~n~rsal~~~~v~~iP~-~eeLkTv~Dkvkdff~~~kesFg~~~ 178 (198)
|.+.+.+ |+++|++.-+| -...-++.+.+.+||..+.+.+....
T Consensus 22 D~d~~~~-l~~~d~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~ 66 (125)
T d1oh0a_ 22 DIEAIVQ-MYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRA 66 (125)
T ss_dssp CHHHHHH-HEEEEEEEESSTTSCCEEHHHHHHHHHHHHHSSSCCEE
T ss_pred CHHHHHH-HhCCCEEEECCCCCcccccHHHHHHHHHHHHHhcccce
Confidence 4444444 66777666555 45557889999999999887776643
Done!