BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029141
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 124/173 (71%)
Query: 2 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN 61
S+ + A ++ + ++I+ I D+PKPGI+F+D+T+LL D KA+ +IDL VERYK+
Sbjct: 4 GSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAG 63
Query: 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAV 121
I+ V G EARGF+FG P+AL +G FVP+RKP KLP E ISE Y LEYG D +E+HV A+
Sbjct: 64 ITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAI 123
Query: 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174
+ G++ L+VDDL+ATGGT+ A ++L+ R+G V + A +I L +L +++K
Sbjct: 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEK 176
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVA 66
D + + IR PDFP PG++F+DI+ +L D +FR I L K + I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 67 GIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 126
G+++RGF+FGP +A +G V +RK KLPG + YSLEYGK +E+ A++ G+R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 127 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELK 167
++VDDL+ATGGT++AA LL R+ V+EC ++EL LK
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLK 163
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 19 AIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAGIEARGFI 74
A+ P+FP GI+F+D + + F+ ID F E + + I + G+E+RGF+
Sbjct: 13 ALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFL 72
Query: 75 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 134
FGP +ALA+G FVP+RK KLPGE Y EYG D+ E+ A+ AG +IVDD++
Sbjct: 73 FGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDII 132
Query: 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWC 178
ATGG+ +AA L+E++ +++E V+EL LK K+ ++
Sbjct: 133 ATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFT 176
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARG 72
+A + I+ IPDFP GI F+D++ +L A YKD I+ V GIE+RG
Sbjct: 5 VADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRG 64
Query: 73 FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVD 131
FI G +A ++G FV +RK KLPG+V + +EY K V +E+ + + L+ D
Sbjct: 65 FILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHD 124
Query: 132 DLVATGGTLSAAIRLLERVGV 152
D++ATGGTL AAI L E GV
Sbjct: 125 DVLATGGTLLAAIELCETAGV 145
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 33 FQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPM 90
F D++++ + + D VERY+ + + + G +ARGF+FGP IA+ +G FV M
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 91 RKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRL 146
RK K G +I SE Y EY + +VM + G++ R +++DD++ATGGT + ++L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 147 LERVGVHVVECACVIELPELKVCLKVQKV 175
+E G VVE ++ +P LK ++
Sbjct: 162 VEASGAEVVEMVSILTIPFLKAAERIHST 190
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 33 FQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPM 90
F D++++ + + D V+RY+ + + + G +ARGF+FGP IA+ + FV M
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 91 RKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRL 146
RK K G +I SE Y EY + +VM + G++ G R +++DD++ATGGT + ++L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 147 LERVGVHVVECACVIELPELKVCLKVQKV 175
+E VVE ++ +P LK K+
Sbjct: 161 VEASDAVVVEMVSILSIPFLKAAEKIHST 189
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-GEVISEEYSLEYG 110
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
+ M + +++ G LI+DD + GGT++ I LL+ +V ++E
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVE 234
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-GEVISEEYSLEYG 110
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
+ M + +++ G LI+DD + GGT++ I LL+ +V ++E
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVE 234
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 46 FRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE 104
+ D + E KDK N +V + F + + A++ + K + P E+
Sbjct: 139 YGDAVPKLAEYVKDKLNDPIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEI---- 194
Query: 105 YSLEYGKDVMEMHVGAVQAGER-ALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160
++ + A +R IVDD+++TGGT++ A++LL+ G + ACV
Sbjct: 195 ----------QIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACV 241
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 78 PIALAIGAKF-VPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT 136
PIA AI + VP+ P++ ++ + ++E G + G+R +I+DDLV+T
Sbjct: 329 PIASAISNEMNVPLIYPRR-EAKIYGTKAAIE----------GEYKKGDRVVIIDDLVST 377
Query: 137 GGTLSAAIRLLERVGVHVVECACVIE 162
G T AI L G+ VV +++
Sbjct: 378 GETKVEAIEKLRSAGLEVVSIVVLVD 403
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 128 LIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYIC 187
+IVD ++ATGG+ AAI L++ G ++ C+I PE V+ V + IYI
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPE-----GVKAVETAHPDVDIYIA 182
Query: 188 TL 189
L
Sbjct: 183 AL 184
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI--ELPELKVCLKVQ--K 174
G V G++ +I++DL++TGG++ A+ +R G V+ + ELP+ + K
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPKATANFEKASVK 203
Query: 175 VIWCPNY 181
++ NY
Sbjct: 204 LVTLSNY 210
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 34 QDITTLLLDTKAFRD--TIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91
D TL F D D V YK+ ++ V + G I+ +G K +
Sbjct: 124 HDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 183
Query: 92 KPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ-AGERALIVDDLVATGGTLSAAIRLLERV 150
K K++ + EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 184 K-KRIDDRTV-------------EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREK 229
Query: 151 GVHVVECACV 160
G + + V
Sbjct: 230 GASKIYVSAV 239
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 34 QDITTLLLDTKAFRD--TIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91
D TL F D D V YK+ ++ V + G I+ +G K +
Sbjct: 126 HDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 185
Query: 92 KPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ-AGERALIVDDLVATGGTLSAAIRLLERV 150
K K++ + EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 186 K-KRIDDRTV-------------EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREK 231
Query: 151 GVHVVECACV 160
G + + V
Sbjct: 232 GASKIYVSAV 241
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 127 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
ALIVD ++ATGG++ A I LL++ G ++ ++ PE
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPE 164
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 47 RDTIDL-FVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISE 103
RD I+ FVE K + V+AG G G IA + F +R K G
Sbjct: 51 RDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGA---- 106
Query: 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI-- 161
G + G V G++ +I++DL++TGG++ A R G V+ +
Sbjct: 107 ------GNQIE----GRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTY 156
Query: 162 ELPELKVCLKVQ--KVIWCPNY 181
ELP+ K K+I NY
Sbjct: 157 ELPKASQNFKEAGIKLITLSNY 178
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
A RA ++D +ATGG+ S A+ LL+ G V+ ++ PE
Sbjct: 122 AERRAFLLDPXLATGGSASLALSLLKERGATGVKLXAILAAPE 164
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164
+R +IVDD+ TG TL I ++++G ++ AC+ P
Sbjct: 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKP 123
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
G+++ GER L + D V GGT + +R L E C +EL E
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDE 46
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 117 HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165
G+++ GER L + D V GGT + +R L E C +EL E
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDE 75
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 100 VISEEYSLEYG-KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 158
+I + + +YG K ++E G + GE LI++D+V +G ++ + +L++ G+ V +
Sbjct: 89 LIRRKETKDYGTKRLVE---GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAI 145
Query: 159 CVIE 162
+++
Sbjct: 146 VLLD 149
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
G+ LIV+D++ TG T+ + L+ + +V+ AC+
Sbjct: 134 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLF 172
>pdb|2JBH|A Chain A, Human Phosphoribosyl Transferase Domain Containing 1
pdb|2JBH|B Chain B, Human Phosphoribosyl Transferase Domain Containing 1
Length = 225
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
AG+ LIV+D+V TG T+ A + +E+ ++++ A ++
Sbjct: 133 AGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLL 171
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155
G + G++ ++V+DL++TGG+ + L G V+
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVL 168
>pdb|1Y0B|A Chain A, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|B Chain B, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|C Chain C, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|D Chain D, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis
Length = 197
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-------GEVISE 103
D F R+ I+ + IE+ G L +G V RK K L V S
Sbjct: 43 DEFASRFAKDGITKIVTIESSGIAPAVXTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 102
Query: 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
E V H+ + LI+DD +A G + ++++ G + VIE
Sbjct: 103 TKQTESQIAVSGTHLSDQ---DHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIE 158
>pdb|2FXV|A Chain A, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
pdb|2FXV|B Chain B, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
Length = 194
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP-------GEVISE 103
D F R+ I+ + IE+ G L +G V RK K L V S
Sbjct: 40 DEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 99
Query: 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
E V H+ + LI+DD +A G + ++++ G + VIE
Sbjct: 100 TKQTESQIAVSGTHLSD---QDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIE 155
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 312 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 368
Query: 63 SVVAGIEARGFIFGPP 78
S V G RG I G P
Sbjct: 369 SSVPG---RGSIEGRP 381
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 366
Query: 63 SVVAGIEARGFIFGPP 78
S V G RG I G P
Sbjct: 367 SSVPG---RGSIEGRP 379
>pdb|1VCH|A Chain A, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|B Chain B, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|C Chain C, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|D Chain D, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
pdb|1VCH|E Chain E, Crystal Structure Of A Phosphoribosyltransferase-Related
Protein From Thermus Thermophilus
Length = 175
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVV 155
+R ++V D+VA+G T+ A +++ R G HVV
Sbjct: 120 NQRVVLVSDVVASGETMRAMEKMVLRAGGHVV 151
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
G+ LIV+D++ TG TL L++ + V AC+
Sbjct: 137 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 174
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161
G+ LIV+D++ TG TL L++ + V AC+
Sbjct: 156 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 193
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIY 183
G++ L+V+D TG + A++ L G VV A V++ VI Y
Sbjct: 114 GKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVDR-----ATGAADVIAAEGLEY 168
Query: 184 IYICTL 189
YI L
Sbjct: 169 RYILGL 174
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160
+VM + VG ++ G+ A+++DD++ T GT++ A L G V C
Sbjct: 207 EVMNI-VGNIE-GKTAILIDDIIDTAGTITLAANALVENGAKEVYACCT 253
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 73 FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEY---SLEYGKDVMEMHVGAVQ 122
F+ IALA G F+ M +PKK ++ E+ S+ GK + VG ++
Sbjct: 114 FVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLR 166
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 369
Query: 63 SVVAGIEARGFIFG 76
S V G RG I G
Sbjct: 370 SSVPG---RGSIEG 380
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 369
Query: 63 SVVAGIEARGFIFG 76
S V G RG I G
Sbjct: 370 SSVPG---RGSIEG 380
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162
+ LIV+D+VATG TL+ L+ VG + A ++E
Sbjct: 143 KHVLIVEDIVATGFTLTEFGERLKAVGPKSMRIATLVE 180
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VAGIEA 70
A A
Sbjct: 371 AAEFAA 376
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 326 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 382
Query: 65 VA 66
A
Sbjct: 383 TA 384
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 366
Query: 65 VA 66
A
Sbjct: 367 AA 368
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 369
Query: 65 VA 66
A
Sbjct: 370 AA 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,483,413
Number of Sequences: 62578
Number of extensions: 214442
Number of successful extensions: 949
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 69
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)