Query 029141
Match_columns 198
No_of_seqs 133 out of 1347
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 100.0 9.3E-35 2E-39 223.5 14.5 174 9-185 4-180 (183)
2 PLN02293 adenine phosphoribosy 100.0 1.2E-33 2.6E-38 227.3 21.4 179 4-185 5-183 (187)
3 PRK02304 adenine phosphoribosy 100.0 7.2E-32 1.6E-36 214.9 19.0 171 13-186 3-173 (175)
4 TIGR01090 apt adenine phosphor 100.0 9.9E-31 2.2E-35 207.3 19.0 167 16-184 1-167 (169)
5 COG0503 Apt Adenine/guanine ph 100.0 1E-29 2.2E-34 203.3 17.7 175 11-186 3-177 (179)
6 PRK09219 xanthine phosphoribos 100.0 2.7E-29 6E-34 202.3 18.4 174 10-188 2-180 (189)
7 TIGR01744 XPRTase xanthine pho 100.0 2.2E-29 4.7E-34 203.2 17.5 173 10-188 2-180 (191)
8 PRK12560 adenine phosphoribosy 100.0 1.2E-27 2.5E-32 192.6 19.2 169 14-186 4-176 (187)
9 TIGR01743 purR_Bsub pur operon 100.0 1.6E-27 3.4E-32 200.5 17.3 168 10-189 83-253 (268)
10 PRK08558 adenine phosphoribosy 100.0 3.6E-27 7.7E-32 196.2 18.0 170 9-186 65-237 (238)
11 PRK13810 orotate phosphoribosy 100.0 5.8E-27 1.3E-31 188.5 17.8 143 32-190 44-186 (187)
12 PRK09213 pur operon repressor; 100.0 3.4E-27 7.4E-32 198.9 17.2 168 10-189 85-255 (271)
13 PRK13809 orotate phosphoribosy 99.9 1.5E-25 3.3E-30 182.7 18.4 174 5-192 6-184 (206)
14 PRK13812 orotate phosphoribosy 99.9 9.4E-25 2E-29 174.2 17.0 141 32-190 31-171 (176)
15 TIGR00336 pyrE orotate phospho 99.9 7.5E-25 1.6E-29 174.3 15.4 144 32-189 24-173 (173)
16 PRK13811 orotate phosphoribosy 99.9 1.8E-24 3.9E-29 171.7 16.6 139 32-190 30-168 (170)
17 PRK07322 adenine phosphoribosy 99.9 7.1E-24 1.5E-28 169.4 16.6 165 16-181 8-177 (178)
18 PRK00455 pyrE orotate phosphor 99.9 1.6E-23 3.5E-28 170.4 18.6 146 32-193 33-180 (202)
19 PRK05500 bifunctional orotidin 99.9 8.4E-24 1.8E-28 190.5 17.9 151 26-192 305-459 (477)
20 COG0461 PyrE Orotate phosphori 99.9 3.8E-23 8.3E-28 166.9 16.9 154 24-193 19-179 (201)
21 PRK02277 orotate phosphoribosy 99.9 2.8E-22 6E-27 163.0 14.8 146 27-187 49-197 (200)
22 TIGR01367 pyrE_Therm orotate p 99.9 8.2E-22 1.8E-26 158.7 16.1 133 32-186 27-162 (187)
23 PRK06031 phosphoribosyltransfe 99.9 1.8E-21 3.8E-26 161.5 16.2 156 13-175 39-204 (233)
24 COG0856 Orotate phosphoribosyl 99.8 4.5E-20 9.8E-25 144.2 12.5 140 31-187 53-198 (203)
25 PF00156 Pribosyltran: Phospho 99.8 1.2E-19 2.6E-24 135.5 11.3 122 38-161 2-125 (125)
26 PRK09162 hypoxanthine-guanine 99.7 1E-15 2.2E-20 122.6 13.4 118 39-164 15-137 (181)
27 TIGR01203 HGPRTase hypoxanthin 99.7 1.2E-15 2.6E-20 120.7 12.2 117 40-165 2-125 (166)
28 PRK09177 xanthine-guanine phos 99.7 1.7E-15 3.8E-20 118.6 12.3 112 39-165 8-120 (156)
29 PLN02238 hypoxanthine phosphor 99.7 2.5E-15 5.5E-20 121.2 13.6 120 37-165 8-138 (189)
30 PRK15423 hypoxanthine phosphor 99.6 7.8E-15 1.7E-19 117.3 12.7 119 38-165 6-133 (178)
31 COG1040 ComFC Predicted amidop 99.6 1.2E-15 2.6E-20 126.2 7.7 125 38-163 86-223 (225)
32 TIGR00201 comF comF family pro 99.6 2.3E-15 5E-20 121.3 9.0 121 39-161 54-189 (190)
33 PRK07199 phosphoribosylpyropho 99.6 1.4E-14 3E-19 124.6 14.2 102 61-174 160-261 (301)
34 PRK00934 ribose-phosphate pyro 99.6 1.9E-14 4E-19 123.0 14.0 101 61-175 154-255 (285)
35 COG0634 Hpt Hypoxanthine-guani 99.6 2.1E-14 4.5E-19 113.0 11.6 122 35-166 6-135 (178)
36 TIGR01134 purF amidophosphorib 99.6 7.2E-15 1.6E-19 132.3 10.3 144 45-191 258-423 (442)
37 PRK02269 ribose-phosphate pyro 99.6 4.7E-14 1E-18 122.2 14.6 103 61-174 165-267 (320)
38 PRK07272 amidophosphoribosyltr 99.6 1.2E-14 2.7E-19 131.7 11.4 142 47-191 272-435 (484)
39 PRK05205 bifunctional pyrimidi 99.6 4E-14 8.7E-19 112.8 12.3 119 38-164 4-136 (176)
40 PTZ00271 hypoxanthine-guanine 99.6 6.2E-14 1.3E-18 114.8 13.6 120 36-165 23-159 (211)
41 PRK08525 amidophosphoribosyltr 99.6 2.6E-14 5.7E-19 128.8 12.3 119 44-164 259-380 (445)
42 PLN02440 amidophosphoribosyltr 99.5 5.9E-14 1.3E-18 127.5 12.5 141 47-190 262-424 (479)
43 PRK01259 ribose-phosphate pyro 99.5 1.4E-13 3.1E-18 118.8 14.0 101 61-174 158-258 (309)
44 PRK04923 ribose-phosphate pyro 99.5 2.2E-13 4.7E-18 118.0 14.4 101 61-174 166-267 (319)
45 PRK00553 ribose-phosphate pyro 99.5 4.2E-13 9.1E-18 116.8 15.4 100 62-174 169-268 (332)
46 PTZ00149 hypoxanthine phosphor 99.5 1.1E-13 2.3E-18 115.3 11.0 130 36-165 53-191 (241)
47 PRK03092 ribose-phosphate pyro 99.5 4.2E-13 9.1E-18 115.6 14.9 102 62-174 149-251 (304)
48 COG0462 PrsA Phosphoribosylpyr 99.5 3.2E-13 7E-18 115.5 13.2 124 33-174 138-264 (314)
49 PRK11595 DNA utilization prote 99.5 2.1E-13 4.5E-18 112.9 11.6 123 38-162 82-225 (227)
50 PRK07349 amidophosphoribosyltr 99.5 1.2E-13 2.6E-18 125.8 11.0 114 45-159 297-412 (500)
51 PRK06827 phosphoribosylpyropho 99.5 5.2E-13 1.1E-17 117.9 14.7 105 61-174 207-313 (382)
52 PRK09246 amidophosphoribosyltr 99.5 1.5E-13 3.3E-18 125.5 11.1 147 42-190 274-442 (501)
53 PRK02458 ribose-phosphate pyro 99.5 4.5E-13 9.7E-18 116.2 13.5 99 62-174 170-268 (323)
54 PRK09123 amidophosphoribosyltr 99.5 3.4E-13 7.4E-18 122.4 12.9 112 44-159 279-395 (479)
55 TIGR01251 ribP_PPkin ribose-ph 99.5 8E-13 1.7E-17 114.1 13.8 102 61-175 159-261 (308)
56 PRK05793 amidophosphoribosyltr 99.5 2.9E-13 6.2E-18 122.8 11.3 115 47-163 275-392 (469)
57 COG2236 Predicted phosphoribos 99.5 2.9E-13 6.2E-18 109.0 9.6 112 39-160 5-123 (192)
58 PRK06781 amidophosphoribosyltr 99.5 2.8E-13 6.2E-18 122.7 9.4 114 45-161 268-385 (471)
59 PRK08341 amidophosphoribosyltr 99.4 7.1E-13 1.5E-17 119.3 11.1 115 44-161 255-371 (442)
60 PRK07847 amidophosphoribosyltr 99.4 9.4E-13 2E-17 120.2 11.6 115 44-160 286-403 (510)
61 PRK06388 amidophosphoribosyltr 99.4 1.2E-12 2.5E-17 118.8 11.7 114 45-161 276-393 (474)
62 PLN02369 ribose-phosphate pyro 99.4 4.4E-12 9.5E-17 109.2 14.4 121 37-174 131-252 (302)
63 PRK02812 ribose-phosphate pyro 99.4 5.5E-12 1.2E-16 109.7 13.4 118 37-173 161-279 (330)
64 PRK07631 amidophosphoribosyltr 99.4 1E-12 2.2E-17 119.2 8.9 115 45-162 268-386 (475)
65 PLN02297 ribose-phosphate pyro 99.4 5.3E-12 1.2E-16 109.4 12.7 97 62-174 184-280 (326)
66 PTZ00145 phosphoribosylpyropho 99.3 2.3E-11 4.9E-16 108.8 13.2 101 61-174 279-385 (439)
67 COG0034 PurF Glutamine phospho 99.3 7E-12 1.5E-16 111.3 8.6 114 45-160 268-384 (470)
68 PF14572 Pribosyl_synth: Phosp 99.3 2.1E-11 4.5E-16 97.4 10.2 110 63-174 5-133 (184)
69 COG1926 Predicted phosphoribos 99.2 8E-11 1.7E-15 95.2 10.8 131 48-181 9-178 (220)
70 PRK00129 upp uracil phosphorib 99.2 3.1E-10 6.7E-15 92.9 12.8 106 63-180 72-179 (209)
71 TIGR01091 upp uracil phosphori 99.2 6.8E-10 1.5E-14 90.8 12.4 106 63-181 70-178 (207)
72 KOG1448 Ribose-phosphate pyrop 99.1 1E-09 2.2E-14 92.9 10.4 124 36-175 142-265 (316)
73 COG2065 PyrR Pyrimidine operon 99.0 4.9E-09 1.1E-13 81.8 11.4 118 40-164 6-137 (179)
74 KOG0572 Glutamine phosphoribos 98.9 3.2E-09 6.8E-14 92.6 6.2 109 48-158 279-390 (474)
75 KOG3367 Hypoxanthine-guanine p 98.8 3E-08 6.5E-13 78.0 10.0 122 33-164 29-165 (216)
76 PLN02541 uracil phosphoribosyl 98.4 2.7E-06 5.8E-11 71.3 10.4 57 122-180 155-214 (244)
77 PF15609 PRTase_2: Phosphoribo 98.4 1E-05 2.2E-10 65.0 12.3 145 36-181 21-182 (191)
78 PF14681 UPRTase: Uracil phosp 98.0 0.00017 3.6E-09 59.0 11.7 106 63-181 69-179 (207)
79 COG0035 Upp Uracil phosphoribo 97.9 6.3E-05 1.4E-09 61.4 9.0 104 64-181 73-181 (210)
80 KOG1503 Phosphoribosylpyrophos 97.2 0.0076 1.6E-07 50.4 11.6 136 34-175 144-298 (354)
81 PF15610 PRTase_3: PRTase ComF 96.4 0.082 1.8E-06 44.9 11.7 114 39-156 28-170 (274)
82 KOG1377 Uridine 5'- monophosph 93.6 0.11 2.3E-06 43.6 4.3 144 32-184 64-221 (261)
83 PF13793 Pribosyltran_N: N-ter 89.3 7.1 0.00015 28.9 10.7 75 70-158 7-85 (116)
84 KOG1017 Predicted uracil phosp 88.6 1.7 3.6E-05 35.6 6.3 55 120-175 185-241 (267)
85 PTZ00145 phosphoribosylpyropho 82.1 22 0.00047 32.6 10.9 82 63-158 119-204 (439)
86 PRK02812 ribose-phosphate pyro 81.7 22 0.00047 31.2 10.5 80 64-158 23-106 (330)
87 PRK07199 phosphoribosylpyropho 79.9 31 0.00067 29.8 10.7 75 70-158 9-86 (301)
88 PRK00934 ribose-phosphate pyro 79.8 24 0.00052 30.1 10.0 74 71-158 7-83 (285)
89 PRK00553 ribose-phosphate pyro 79.2 35 0.00076 29.9 11.0 76 69-158 15-94 (332)
90 PRK02269 ribose-phosphate pyro 78.6 38 0.00081 29.5 11.0 80 64-158 7-90 (320)
91 PLN02369 ribose-phosphate pyro 78.3 21 0.00045 30.8 9.2 70 74-157 2-75 (302)
92 PRK01259 ribose-phosphate pyro 78.0 29 0.00063 30.0 10.0 75 70-158 7-85 (309)
93 PRK04923 ribose-phosphate pyro 76.9 41 0.0009 29.3 10.7 80 64-158 8-91 (319)
94 PRK03092 ribose-phosphate pyro 75.7 26 0.00056 30.3 9.1 70 75-158 1-74 (304)
95 TIGR01251 ribP_PPkin ribose-ph 74.2 31 0.00067 29.8 9.2 74 70-157 7-85 (308)
96 COG0462 PrsA Phosphoribosylpyr 70.1 29 0.00063 30.3 8.0 76 71-160 12-91 (314)
97 PF11382 DUF3186: Protein of u 69.7 17 0.00037 31.5 6.6 55 121-175 80-135 (308)
98 PF01488 Shikimate_DH: Shikima 64.7 24 0.00052 26.3 5.8 45 122-174 10-54 (135)
99 PRK02458 ribose-phosphate pyro 63.7 1E+02 0.0022 26.9 11.0 77 68-158 14-94 (323)
100 PLN02331 phosphoribosylglycina 62.3 22 0.00047 29.0 5.5 48 135-183 8-55 (207)
101 COG0299 PurN Folate-dependent 59.1 20 0.00044 29.2 4.7 48 135-183 9-56 (200)
102 PRK06827 phosphoribosylpyropho 52.7 1.7E+02 0.0038 26.2 10.4 44 114-158 67-128 (382)
103 PRK12342 hypothetical protein; 50.1 59 0.0013 27.5 6.3 43 48-90 96-142 (254)
104 cd00158 RHOD Rhodanese Homolog 46.6 50 0.0011 21.5 4.5 32 122-156 48-79 (89)
105 PF07931 CPT: Chloramphenicol 45.3 29 0.00062 27.5 3.5 47 123-172 82-129 (174)
106 PRK03359 putative electron tra 44.6 86 0.0019 26.5 6.4 42 48-89 99-144 (256)
107 PLN02297 ribose-phosphate pyro 43.7 2.3E+02 0.0049 24.9 10.5 81 64-158 18-102 (326)
108 smart00450 RHOD Rhodanese Homo 42.7 53 0.0011 21.7 4.2 32 121-155 53-84 (100)
109 PRK04195 replication factor C 42.3 2.5E+02 0.0054 25.7 9.6 112 36-154 13-133 (482)
110 COG2984 ABC-type uncharacteriz 42.0 2.4E+02 0.0053 24.8 10.1 51 33-90 64-115 (322)
111 PRK05569 flavodoxin; Provision 41.8 1.3E+02 0.0028 22.1 6.5 53 122-174 81-134 (141)
112 cd01444 GlpE_ST GlpE sulfurtra 40.0 52 0.0011 22.2 3.8 32 122-156 54-85 (96)
113 cd01529 4RHOD_Repeats Member o 39.8 59 0.0013 22.2 4.1 31 122-155 54-84 (96)
114 PRK10618 phosphotransfer inter 39.6 1.5E+02 0.0032 29.7 8.2 32 122-156 687-718 (894)
115 PF04392 ABC_sub_bind: ABC tra 39.3 1.1E+02 0.0024 25.7 6.5 117 34-157 36-166 (294)
116 cd01714 ETF_beta The electron 38.5 58 0.0012 26.2 4.4 42 48-89 95-140 (202)
117 COG0120 RpiA Ribose 5-phosphat 38.4 35 0.00076 28.4 3.1 49 134-185 26-74 (227)
118 COG0784 CheY FOG: CheY-like re 38.3 87 0.0019 21.9 5.0 26 123-151 4-29 (130)
119 PRK13978 ribose-5-phosphate is 36.0 58 0.0013 27.1 4.1 49 134-185 27-76 (228)
120 cd01715 ETF_alpha The electron 35.2 85 0.0018 24.2 4.7 42 48-89 70-112 (168)
121 PRK05647 purN phosphoribosylgl 34.9 85 0.0018 25.3 4.8 46 136-182 11-56 (200)
122 PRK01021 lpxB lipid-A-disaccha 34.5 1.1E+02 0.0023 29.4 6.0 45 45-89 294-341 (608)
123 PF02875 Mur_ligase_C: Mur lig 34.3 86 0.0019 21.3 4.2 35 125-159 12-48 (91)
124 COG0169 AroE Shikimate 5-dehyd 34.3 1E+02 0.0022 26.5 5.4 41 122-169 124-164 (283)
125 PF01012 ETF: Electron transfe 33.7 60 0.0013 24.7 3.6 45 42-89 74-119 (164)
126 PRK13584 hisG ATP phosphoribos 33.4 18 0.00039 29.6 0.6 12 131-142 149-160 (204)
127 COG0371 GldA Glycerol dehydrog 33.1 1E+02 0.0023 27.4 5.4 31 60-90 83-114 (360)
128 COG3535 Uncharacterized conser 33.1 3.5E+02 0.0076 24.0 12.9 109 41-158 76-190 (357)
129 TIGR00639 PurN phosphoribosylg 33.0 97 0.0021 24.8 4.8 46 136-182 10-55 (190)
130 PRK01686 hisG ATP phosphoribos 31.9 21 0.00046 29.4 0.8 12 131-142 159-170 (215)
131 PRK08057 cobalt-precorrin-6x r 31.2 93 0.002 26.1 4.6 35 59-93 188-224 (248)
132 PF01634 HisG: ATP phosphoribo 31.2 21 0.00045 28.1 0.6 11 132-142 112-122 (163)
133 PRK10200 putative racemase; Pr 30.6 85 0.0018 25.8 4.2 51 132-185 56-106 (230)
134 PRK13583 hisG ATP phosphoribos 30.2 23 0.00051 29.4 0.8 11 132-142 177-187 (228)
135 PF03681 UPF0150: Uncharacteri 28.8 19 0.00042 21.8 0.1 19 132-150 23-41 (48)
136 PF04723 GRDA: Glycine reducta 28.3 1.2E+02 0.0025 23.5 4.2 35 122-158 3-37 (150)
137 COG0040 HisG ATP phosphoribosy 27.9 25 0.00055 30.3 0.6 11 132-142 161-171 (290)
138 PLN02384 ribose-5-phosphate is 27.6 85 0.0018 26.7 3.8 49 134-185 55-105 (264)
139 PF10945 DUF2629: Protein of u 27.6 29 0.00063 21.3 0.7 24 9-38 2-25 (44)
140 cd01985 ETF The electron trans 27.4 1.1E+02 0.0023 23.8 4.2 42 48-89 78-120 (181)
141 cd01523 RHOD_Lact_B Member of 27.3 1.3E+02 0.0029 20.5 4.3 29 122-153 59-87 (100)
142 TIGR00070 hisG ATP phosphoribo 27.3 28 0.00062 27.9 0.8 13 130-142 152-164 (182)
143 PF00289 CPSase_L_chain: Carba 27.2 2E+02 0.0043 20.8 5.3 63 125-192 3-69 (110)
144 TIGR01809 Shik-DH-AROM shikima 27.2 1.1E+02 0.0025 25.8 4.5 40 122-168 123-162 (282)
145 COG0588 GpmA Phosphoglycerate 26.8 72 0.0016 26.5 3.1 27 121-151 171-197 (230)
146 COG4917 EutP Ethanolamine util 26.7 87 0.0019 24.1 3.2 36 137-175 105-140 (148)
147 cd03572 ENTH_epsin_related ENT 26.7 44 0.00095 25.0 1.7 37 25-61 14-51 (122)
148 PF13241 NAD_binding_7: Putati 26.5 98 0.0021 21.8 3.5 30 122-155 5-34 (103)
149 TIGR00215 lpxB lipid-A-disacch 25.8 1.8E+02 0.0039 25.6 5.7 36 55-90 83-119 (385)
150 cd01518 RHOD_YceA Member of th 25.8 1.6E+02 0.0034 20.2 4.4 31 122-155 59-89 (101)
151 KOG0733 Nuclear AAA ATPase (VC 25.2 48 0.001 32.0 2.0 25 66-90 229-254 (802)
152 COG4565 CitB Response regulato 25.2 1.1E+02 0.0024 25.3 3.9 18 136-153 31-48 (224)
153 PF10662 PduV-EutP: Ethanolami 24.6 96 0.0021 23.8 3.3 41 132-175 100-140 (143)
154 cd06356 PBP1_Amide_Urea_BP_lik 23.8 3.9E+02 0.0084 22.5 7.3 47 40-89 49-96 (334)
155 PRK13265 glycine/sarcosine/bet 23.4 2.1E+02 0.0046 22.1 4.8 36 122-159 4-39 (154)
156 PF01555 N6_N4_Mtase: DNA meth 23.2 66 0.0014 25.2 2.2 22 127-148 193-214 (231)
157 cd06336 PBP1_ABC_ligand_bindin 23.1 3.8E+02 0.0082 22.7 7.1 47 40-89 53-99 (347)
158 COG1797 CobB Cobyrinic acid a, 23.0 6E+02 0.013 23.4 10.6 70 19-91 34-118 (451)
159 PRK11466 hybrid sensory histid 22.9 5.1E+02 0.011 25.3 8.7 29 122-153 679-707 (914)
160 COG1794 RacX Aspartate racemas 22.9 2.2E+02 0.0047 23.8 5.2 50 135-187 59-108 (230)
161 TIGR00715 precor6x_red precorr 22.8 1.6E+02 0.0035 24.8 4.6 35 59-93 195-232 (256)
162 PF05728 UPF0227: Uncharacteri 22.7 3.3E+02 0.0071 21.6 6.2 27 63-90 61-87 (187)
163 TIGR01470 cysG_Nterm siroheme 22.7 3.1E+02 0.0068 22.0 6.1 29 122-154 7-35 (205)
164 PF14502 HTH_41: Helix-turn-he 22.4 1.2E+02 0.0025 19.0 2.7 19 136-154 19-37 (48)
165 TIGR01426 MGT glycosyltransfer 22.3 3E+02 0.0065 23.8 6.4 33 55-89 86-118 (392)
166 KOG0081 GTPase Rab27, small G 22.1 3.5E+02 0.0077 21.6 6.0 30 60-89 123-160 (219)
167 PF07726 AAA_3: ATPase family 22.0 3.6E+02 0.0078 20.5 7.4 76 74-153 14-92 (131)
168 PRK11107 hybrid sensory histid 21.6 6.5E+02 0.014 24.4 9.2 31 122-155 534-564 (919)
169 PF02571 CbiJ: Precorrin-6x re 21.4 1.7E+02 0.0036 24.6 4.4 35 59-93 192-228 (249)
170 cd06367 PBP1_iGluR_NMDA N-term 21.2 1.5E+02 0.0033 25.3 4.3 47 40-89 45-95 (362)
171 PF02684 LpxB: Lipid-A-disacch 21.1 2.3E+02 0.005 25.3 5.4 57 32-89 45-113 (373)
172 PRK04940 hypothetical protein; 20.9 4E+02 0.0087 21.3 6.3 50 41-91 37-89 (180)
173 KOG0519 Sensory transduction h 20.9 1.2E+02 0.0027 29.7 4.0 34 121-157 663-696 (786)
174 cd06367 PBP1_iGluR_NMDA N-term 20.7 2.2E+02 0.0048 24.3 5.2 60 126-187 38-100 (362)
175 PRK12749 quinate/shikimate deh 20.7 1.9E+02 0.0042 24.6 4.7 36 122-164 122-157 (288)
176 cd01528 RHOD_2 Member of the R 20.6 2.1E+02 0.0046 19.5 4.2 31 123-156 57-87 (101)
177 PRK14027 quinate/shikimate deh 20.6 1.9E+02 0.0041 24.6 4.6 40 122-168 125-164 (283)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.3e-35 Score=223.49 Aligned_cols=174 Identities=65% Similarity=1.075 Sum_probs=167.1
Q ss_pred CchHHHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCC
Q 029141 9 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA 85 (198)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~ 85 (198)
.|+.++.+++.+|..|+||+.|++|.|+..++.||..++.+...+.+++++ .++|+|+|++.|||.++-.+|.++|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999986 57999999999999999999999999
Q ss_pred CEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 86 KFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 86 p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
+|++.||.+|+++++++.+|..+++.+++++..+++.+|+||+||||++.||+|+.+|.+++++.|++++.+++++..++
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~ 163 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPE 163 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhhcCCCCeeehHH
Q 029141 166 LKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~ 185 (198)
.+||++|. ++|+++++.
T Consensus 164 LkGr~kL~---~~pl~~Ll~ 180 (183)
T KOG1712|consen 164 LKGREKLK---GKPLFSLLE 180 (183)
T ss_pred cCCccccC---CCccEEEee
Confidence 99999998 589998864
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=1.2e-33 Score=227.27 Aligned_cols=179 Identities=76% Similarity=1.195 Sum_probs=163.0
Q ss_pred cccCCCchHHHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHh
Q 029141 4 ADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI 83 (198)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L 83 (198)
--.+++||+.++|++.+|+.|+||.+|++|+|++.++.+|+.++.++..+++++.+.++|+|+|++.+|+++|+.+|..+
T Consensus 5 ~~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~L 84 (187)
T PLN02293 5 ENGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAI 84 (187)
T ss_pred ccccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred CCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 029141 84 GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (198)
Q Consensus 84 ~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~ 163 (198)
|+|+++.||.++.++++....|..+++++.+++..+...+|++|+||||+++||+|+.+++++|+++|+++++++++++.
T Consensus 85 g~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~ 164 (187)
T PLN02293 85 GAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIEL 164 (187)
T ss_pred CCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEc
Confidence 99999999988877777766776667777777776666799999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhhcCCCCeeehHH
Q 029141 164 PELKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~~ 185 (198)
++.+|++++. +.|++|++.
T Consensus 165 ~~~~g~~~l~---~~~~~sl~~ 183 (187)
T PLN02293 165 PELKGREKLN---GKPLFVLVE 183 (187)
T ss_pred CCccHHHHhc---CCceEEEEe
Confidence 9889999987 479998874
No 3
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.2e-32 Score=214.86 Aligned_cols=171 Identities=57% Similarity=0.945 Sum_probs=149.6
Q ss_pred HHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEc
Q 029141 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRK 92 (198)
Q Consensus 13 ~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk 92 (198)
+++|+...+.+|.||.+++.|.|+++++.+|+.++.+++.+++++.+.++|+|+|++.+|+++|+.+|..+++|+...||
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk 82 (175)
T PRK02304 3 LEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRK 82 (175)
T ss_pred HHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999999999999999999987789999999999999999999999999998888
Q ss_pred ccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHh
Q 029141 93 PKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKV 172 (198)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l 172 (198)
+++.++...+.++..+++.+.+.+..+...+|++||||||++|||+|+.++++.|+++|++++++++++++++.+|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l 162 (175)
T PRK02304 83 PGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKL 162 (175)
T ss_pred CCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhc
Confidence 76544444444554444455666655556899999999999999999999999999999999999999999876788888
Q ss_pred hhcCCCCeeehHHH
Q 029141 173 QKVIWCPNYIYIYI 186 (198)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (198)
. ++|++|++++
T Consensus 163 ~---~~~~~sl~~~ 173 (175)
T PRK02304 163 E---GYPVKSLVKF 173 (175)
T ss_pred C---CCceEEEEEe
Confidence 7 7999998765
No 4
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.97 E-value=9.9e-31 Score=207.26 Aligned_cols=167 Identities=53% Similarity=0.882 Sum_probs=145.4
Q ss_pred HhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccC
Q 029141 16 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 95 (198)
Q Consensus 16 l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~ 95 (198)
|+++++.+|+||.||+.|+|++.++.+|+.++.+++.+++++.+.++|+|+|++++|+++|..+|..+++|+...+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46788999999999999999999999999999999999999987789999999999999999999999999988877665
Q ss_pred CCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc
Q 029141 96 LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
..+...+..++.+++.+.+++......+|++||||||++|||+|+.++++.|+++|++++++++++++.+.+|.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 55555555554444445565554445699999999999999999999999999999999999999999888899999885
Q ss_pred CCCCeeehH
Q 029141 176 IWCPNYIYI 184 (198)
Q Consensus 176 ~~~~~~~~~ 184 (198)
+|++|++
T Consensus 161 --~~~~sl~ 167 (169)
T TIGR01090 161 --VPVFSLL 167 (169)
T ss_pred --CceEEEE
Confidence 9999875
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.97 E-value=1e-29 Score=203.30 Aligned_cols=175 Identities=47% Similarity=0.711 Sum_probs=158.6
Q ss_pred hHHHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEE
Q 029141 11 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 90 (198)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~ 90 (198)
.-++.|++.++..|.||++|++|.|....+.+++.+......+++++.+.++|.|++++++|+++|+.+|..||+|+++.
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 45788999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred EcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHH
Q 029141 91 RKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCL 170 (198)
Q Consensus 91 rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~ 170 (198)
||.++.+..++...+..+++.+.+++..+...+|+|||||||++.||+|+.+.+++++++|+++++++++++.++.++++
T Consensus 83 RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~ 162 (179)
T COG0503 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRK 162 (179)
T ss_pred EecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccch
Confidence 99988877666666666666667888888878999999999999999999999999999999999999999999989998
Q ss_pred HhhhcCCCCeeehHHH
Q 029141 171 KVQKVIWCPNYIYIYI 186 (198)
Q Consensus 171 ~l~~~~~~~~~~~~~~ 186 (198)
++... +.|++++..+
T Consensus 163 ~l~~~-~~~v~~l~~~ 177 (179)
T COG0503 163 KLEDD-GLPVFSLVRI 177 (179)
T ss_pred hhccC-CceEEEEEec
Confidence 88876 4888877543
No 6
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.97 E-value=2.7e-29 Score=202.25 Aligned_cols=174 Identities=24% Similarity=0.278 Sum_probs=145.2
Q ss_pred chHHHHHhccccccCCCCCCCceeeec-HHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEE
Q 029141 10 DPRIAGISSAIRVIPDFPKPGIMFQDI-TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 88 (198)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~g~~~~d~-~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~ 88 (198)
.+.++|+++.-+.+|| |++|++- .+...||+.++.+++.+++++.+.++|+|+|++.+|+++|+.+|..+|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 2 KLLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVV 77 (189)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678999999999999 8655332 3444999999999999999998888999999999999999999999999999
Q ss_pred EEEcccCCC--Cceeeee-eeecc-ccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 029141 89 PMRKPKKLP--GEVISEE-YSLEY-GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (198)
Q Consensus 89 ~~rk~~~~~--~~~~~~~-~~~~~-~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~ 164 (198)
+.||..+.+ ++..... ++.+. +...+++..+...+|+|||||||+++||+|+.+++++++++|+++++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~ 157 (189)
T PRK09219 78 FAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKS 157 (189)
T ss_pred EEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEcc
Confidence 999887653 3333322 22222 2345677777778999999999999999999999999999999999999999998
Q ss_pred CchHHHHhhhcCCCCeeehHHHHH
Q 029141 165 ELKVCLKVQKVIWCPNYIYIYICT 188 (198)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~ 188 (198)
+.+|++++.+. ++|++|++++.+
T Consensus 158 ~~~g~~~l~~~-g~~~~sl~~~~~ 180 (189)
T PRK09219 158 FQDGRKLLEEK-GYRVESLARIAS 180 (189)
T ss_pred CccHHHHHHhc-CCcEEEEEEeee
Confidence 77899999876 999999987643
No 7
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.97 E-value=2.2e-29 Score=203.22 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=144.8
Q ss_pred chHHHHHhccccccCCCCCCCceeeec-HHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEE
Q 029141 10 DPRIAGISSAIRVIPDFPKPGIMFQDI-TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 88 (198)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~g~~~~d~-~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~ 88 (198)
++++++|++.-|.+|+ |++|.|. -+...||+.++.++..+++++.+.++|+|++++.+|+++|+.+|..+|+|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 5789999999999999 8766554 2445799999999999999998778999999999999999999999999999
Q ss_pred EEEcccCCCC--cee---eeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 029141 89 PMRKPKKLPG--EVI---SEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (198)
Q Consensus 89 ~~rk~~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~ 163 (198)
+.||..+.+. ..+ ..+|.. ++...+++..+...+|+|||||||++|||+|+.+++++++++|++++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9999865432 122 222222 2334566666666799999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhhcCCCCeeehHHHHH
Q 029141 164 PELKVCLKVQKVIWCPNYIYIYICT 188 (198)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~~~~~ 188 (198)
++.+|++.+.+. ++|++|++++..
T Consensus 157 ~~~~g~~~l~~~-gvpv~sL~~~~~ 180 (191)
T TIGR01744 157 SFQNGRQELVEL-GYRVESLARIQS 180 (191)
T ss_pred cCccHHHHHHhc-CCcEEEEEEEee
Confidence 878899999886 999999987643
No 8
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=192.62 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=139.0
Q ss_pred HHHhccccccCCCCCCCc--eeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEE
Q 029141 14 AGISSAIRVIPDFPKPGI--MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91 (198)
Q Consensus 14 ~~l~~~~~~~~~~~~~g~--~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~r 91 (198)
.+++..+|++|+||.+|. .|+|+.+++. |+.++.++..+++.+ +.++|+|+|++.+|+++|+.+|..+++|+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 4 KNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 457788999999999998 7999999999 999999999999888 668999999999999999999999999999988
Q ss_pred cccCCCCceeeeeeeeccccceEE--EEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHH
Q 029141 92 KPKKLPGEVISEEYSLEYGKDVME--MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVC 169 (198)
Q Consensus 92 k~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~ 169 (198)
|.+.......... .+++.+.++ +..+...+|++||||||+++||+|+.+++++++++|++++++++++++.+.+|+
T Consensus 82 k~~~~~~~~~~~~--~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~ 159 (187)
T PRK12560 82 WYPYSLSELNYNV--VEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGR 159 (187)
T ss_pred cCCCcccceeEEe--eeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchH
Confidence 7543211111100 011222222 333455799999999999999999999999999999999999999999877889
Q ss_pred HHhhhcCCCCeeehHHH
Q 029141 170 LKVQKVIWCPNYIYIYI 186 (198)
Q Consensus 170 ~~l~~~~~~~~~~~~~~ 186 (198)
+.+.+..++|++|++++
T Consensus 160 ~~l~~~~gv~v~sl~~~ 176 (187)
T PRK12560 160 KKLFTQTGINVKSLVKI 176 (187)
T ss_pred HHHhhccCCcEEEEEEE
Confidence 99966559999998865
No 9
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.95 E-value=1.6e-27 Score=200.53 Aligned_cols=168 Identities=20% Similarity=0.368 Sum_probs=143.5
Q ss_pred chHHHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE
Q 029141 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~ 89 (198)
++.|++|+++-|.+|| | |++++.++.||+.++.+++.+++++.+.++|+|++++++|+|+|+.+|.+||+|+++
T Consensus 83 ~~l~~~l~~~~rilpg----g--~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vi 156 (268)
T TIGR01743 83 EELCQSLSEPERILPG----G--YLYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVI 156 (268)
T ss_pred HHHHHHHHHCCCcccC----C--eEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEE
Confidence 4678888888899988 7 556889999999999999999999988889999999999999999999999999999
Q ss_pred EEcccCC-CCceeeeeeeecccc--ceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCc
Q 029141 90 MRKPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPEL 166 (198)
Q Consensus 90 ~rk~~~~-~~~~~~~~~~~~~~~--~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~ 166 (198)
.||..+. ++++++.+|.....+ +.+++.++...+|+|||||||+++||+|+.+++++++++|++++++++++++.
T Consensus 157 vRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~-- 234 (268)
T TIGR01743 157 VRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNE-- 234 (268)
T ss_pred EEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECC--
Confidence 9998776 677777777543322 24677767778999999999999999999999999999999999999999996
Q ss_pred hHHHHhhhcCCCCeeehHHHHHH
Q 029141 167 KVCLKVQKVIWCPNYIYIYICTL 189 (198)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~ 189 (198)
++++++ ..|++|++.+.++
T Consensus 235 ~~~~~l----~~~~~SL~~~~~~ 253 (268)
T TIGR01743 235 GVDEKL----VDDYMSLLTLSNI 253 (268)
T ss_pred CChHHc----CCCceEEEEEeec
Confidence 344454 3578888876654
No 10
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.95 E-value=3.6e-27 Score=196.23 Aligned_cols=170 Identities=23% Similarity=0.301 Sum_probs=138.4
Q ss_pred CchHHHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEE
Q 029141 9 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 88 (198)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~ 88 (198)
..++.+.+.++++..|+ | |+|++.++.||+.++.+++.+++.+.+.++|+|++++++|+++|..+|..||+|++
T Consensus 65 ~~~~~~~l~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~v 138 (238)
T PRK08558 65 YYNLEEEVKARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLV 138 (238)
T ss_pred hhhhHHHHHhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEE
Confidence 33445555667766666 5 88999999999999999999999998778999999999999999999999999999
Q ss_pred EEEcccCCC-Cceeeeeeeecc-cc-ceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 89 PMRKPKKLP-GEVISEEYSLEY-GK-DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 89 ~~rk~~~~~-~~~~~~~~~~~~-~~-~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
+.||.++.. +.+++ .|.... +. ..+++..+...+|++||||||+++||+|+.+++++++++|+++++++++++..+
T Consensus 139 i~Rk~~~~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~ 217 (238)
T PRK08558 139 YAKKSKETGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGE 217 (238)
T ss_pred EEEecCCCCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCc
Confidence 998865442 33443 443211 11 234555556689999999999999999999999999999999999999999975
Q ss_pred chHHHHhhhcCCCCeeehHHH
Q 029141 166 LKVCLKVQKVIWCPNYIYIYI 186 (198)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~~ 186 (198)
.+++++.+.+++|+.|++++
T Consensus 218 -~~~~~l~~~~~vpv~sl~~~ 237 (238)
T PRK08558 218 -VGIDRAREETDAPVDALYTL 237 (238)
T ss_pred -hHHHHHhHhcCCCEEEEEEe
Confidence 56888887679999998753
No 11
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=5.8e-27 Score=188.45 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=127.5
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeecccc
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (198)
.|+|+..++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|+.+|..+|+|+++.||..+. ++.
T Consensus 44 ~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~------------~g~ 111 (187)
T PRK13810 44 YYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKD------------YGT 111 (187)
T ss_pred EEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCc------------cCC
Confidence 79999999999999999999999999887899999999999999999999999999999987541 222
Q ss_pred ceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHHHHHHH
Q 029141 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYICTLL 190 (198)
Q Consensus 112 ~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (198)
+++ ..+...+|++|+||||++|||+|+.+++++++++|++++++++++++.. ++++++.+. ++|++|+++..+++
T Consensus 112 ~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-g~~~~l~~~-gi~~~sl~~~~~~~ 186 (187)
T PRK13810 112 GSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-GAEENLKEA-DVELVPLVSASDLL 186 (187)
T ss_pred Cce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-ChHHHHHHc-CCcEEEEEEHHHhh
Confidence 222 2345579999999999999999999999999999999999999999975 889999876 99999999988775
No 12
>PRK09213 pur operon repressor; Provisional
Probab=99.95 E-value=3.4e-27 Score=198.94 Aligned_cols=168 Identities=23% Similarity=0.391 Sum_probs=142.5
Q ss_pred chHHHHHhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE
Q 029141 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~ 89 (198)
++++++|+++.|.+|| | |++++.++.+|+.++.+++.+++++.+.++|+|++++.+|+++|+.+|.++|+|+++
T Consensus 85 ~~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vi 158 (271)
T PRK09213 85 EELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVI 158 (271)
T ss_pred HHHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 4678899999999998 6 456788999999999999999999988889999999999999999999999999999
Q ss_pred EEcccCC-CCceeeeeeeeccc--cceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCc
Q 029141 90 MRKPKKL-PGEVISEEYSLEYG--KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPEL 166 (198)
Q Consensus 90 ~rk~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~ 166 (198)
.||..+. ++++++.+|..... ...+++.++...+|+|||||||+++||+|+.+++++++++|++++++++++++.+
T Consensus 159 vRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~- 237 (271)
T PRK09213 159 VRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKE- 237 (271)
T ss_pred EEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCC-
Confidence 9998775 67777777754322 2356777777789999999999999999999999999999999999999999873
Q ss_pred hHHHHhhhcCCCCeeehHHHHHH
Q 029141 167 KVCLKVQKVIWCPNYIYIYICTL 189 (198)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~ 189 (198)
+++++ ..|++|++.+.++
T Consensus 238 -~~~~l----~~~~~SL~~~~~v 255 (271)
T PRK09213 238 -PEERL----VDDYVSLLKLSEV 255 (271)
T ss_pred -Chhhc----CCceEEEEEEehh
Confidence 44444 3478888766543
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=1.5e-25 Score=182.70 Aligned_cols=174 Identities=18% Similarity=0.250 Sum_probs=138.9
Q ss_pred ccCCCchHHHHHhccccc-cCCCC-CCCc---eeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHH
Q 029141 5 DVKAQDPRIAGISSAIRV-IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPI 79 (198)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~-~~~~~-~~g~---~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~l 79 (198)
|.+..+...+.|.+.=.. ...|. .+|. .|+|+..++.+|+.++.+++.+++.+...++|+|+|++.+|+++|+.+
T Consensus 6 ~~~~~~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~v 85 (206)
T PRK13809 6 DAKLRDQAVAILYQIGAIKFGKFILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSI 85 (206)
T ss_pred hhhhHHHHHHHHHHcCCEEECCEEECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHH
Confidence 444444445555443111 12344 3443 799999999999999999999999887778999999999999999999
Q ss_pred HHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEE
Q 029141 80 ALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 159 (198)
Q Consensus 80 a~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~ 159 (198)
|..+++|+.+.||..+..++. +.+++ .+...+|++|+||||++|||+|+.++++.|+++|++++++++
T Consensus 86 A~~l~~p~~~~RK~~K~~G~~-----------~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~v 153 (206)
T PRK13809 86 SLKYNIPMVLRRKELKNVDPS-----------DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALV 153 (206)
T ss_pred HHHhCCCEEEEeCCCCCCCCc-----------CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEE
Confidence 999999999999876643321 12322 234469999999999999999999999999999999999999
Q ss_pred EEecCCchHHHHhhhcCCCCeeehHHHHHHHHH
Q 029141 160 VIELPELKVCLKVQKVIWCPNYIYIYICTLLFV 192 (198)
Q Consensus 160 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (198)
++++. .++++++.+. ++|++|++++..++=.
T Consensus 154 lvdr~-~~~~~~l~~~-gi~v~sl~~~~~l~~~ 184 (206)
T PRK13809 154 FLDRQ-KGACQPLGPQ-GIKLSSVFTVPDLIKS 184 (206)
T ss_pred EEECc-ccHHHHHHhc-CCCEEEEEEHHHHHHH
Confidence 99986 5788999875 9999999999888744
No 14
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=9.4e-25 Score=174.19 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=122.3
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeecccc
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (198)
.|+|+..+..+|+.++.+++.+++.+.+ .|+|+|++.+|+++|+.+|..+|+|+++.||.++. ++.
T Consensus 31 ~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~------------yg~ 96 (176)
T PRK13812 31 YYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKE------------YGT 96 (176)
T ss_pred EEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCc------------CCC
Confidence 6899999999999999999999998854 38999999999999999999999999999986542 121
Q ss_pred ceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHHHHHHH
Q 029141 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYICTLL 190 (198)
Q Consensus 112 ~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (198)
... ..+...+|++|+||||+++||+|+.++++.|+++|++++++++++++. .++++++.++ ++|++|++++.+++
T Consensus 97 ~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~-~~~~~~l~~~-g~~v~sL~~~~~~~ 171 (176)
T PRK13812 97 GNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDRE-EGARENLADH-DVELEALVTASDLL 171 (176)
T ss_pred CCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECC-cchHHHHHhc-CCcEEEEEeHHHHH
Confidence 111 113345899999999999999999999999999999999999999997 4788888887 99999999988875
No 15
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.93 E-value=7.5e-25 Score=174.27 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=124.5
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcC-CCccEEEeeCCcchHhHHHHHHHhCCC-----EEEEEcccCCCCceeeeee
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAK-----FVPMRKPKKLPGEVISEEY 105 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~-~~~d~Iv~v~~gG~~~A~~la~~L~~p-----~~~~rk~~~~~~~~~~~~~ 105 (198)
.|+|+..++.+|+.++.++..+.+.+.+ .++|+|+|++++|+++|+.+|..+++| +.+.||..+..+
T Consensus 24 ~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g------- 96 (173)
T TIGR00336 24 YYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHG------- 96 (173)
T ss_pred EEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCC-------
Confidence 6899999999999999999999998876 689999999999999999999999999 888887654211
Q ss_pred eeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHH
Q 029141 106 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (198)
.... ..+...+|++||||||+++||+|+.++++.|+++|++++++++++++++.++++++.+.+++|++|+++
T Consensus 97 -----~~~~--~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~sl~~ 169 (173)
T TIGR00336 97 -----EGGN--IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISLIT 169 (173)
T ss_pred -----CCCc--eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEEEEe
Confidence 1111 113446999999999999999999999999999999999999999998767899998877999999988
Q ss_pred HHHH
Q 029141 186 ICTL 189 (198)
Q Consensus 186 ~~~~ 189 (198)
..+|
T Consensus 170 ~~~l 173 (173)
T TIGR00336 170 LKDL 173 (173)
T ss_pred HhhC
Confidence 7653
No 16
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.8e-24 Score=171.72 Aligned_cols=139 Identities=24% Similarity=0.381 Sum_probs=119.0
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeecccc
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (198)
.|+|+..++.+|+.++.+++.+++.+ ++|+|+|++.+|+++|+.+|..+|+|+.+.||.++.. +.
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~------------g~ 94 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDH------------GK 94 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCC------------CC
Confidence 57899999999999999999887653 6899999999999999999999999999999865421 11
Q ss_pred ceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHHHHHHH
Q 029141 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYICTLL 190 (198)
Q Consensus 112 ~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (198)
.... .+. .+|++|+||||+++||+|+.+++++|+++|++++++++++++++ ++++++.++ ++|++|++.+..++
T Consensus 95 ~~~~--~g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-g~~~~l~~~-gv~~~sl~~~~~~~ 168 (170)
T PRK13811 95 AGLI--IGD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-GAEELLAEL-GITLTPLVRVSELL 168 (170)
T ss_pred cceE--Ecc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-cHHHHHHhc-CCcEEEEeEHHHHh
Confidence 1111 122 69999999999999999999999999999999999999999974 678888775 99999999888763
No 17
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=7.1e-24 Score=169.41 Aligned_cols=165 Identities=26% Similarity=0.361 Sum_probs=125.6
Q ss_pred HhccccccCCCCCCCceeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccC
Q 029141 16 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 95 (198)
Q Consensus 16 l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~ 95 (198)
++..+|++|+|+.++.-+++..+++.||.+++.+++.+++.+.+ ++|+|+|++.+|+++|..+|+.+++|+...+|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 46678999999977666889999999999999999999999876 78999999999999999999999999988776543
Q ss_pred C--CCceeeeeeeeccccce-EEEEec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHH
Q 029141 96 L--PGEVISEEYSLEYGKDV-MEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCL 170 (198)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~-~~l~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~ 170 (198)
. ........+....+.++ +.+... ...+|++||||||+++||+|+.+++++|+++|+++++++++++.++...+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~~ 166 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNRL 166 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCCC
Confidence 2 12221111111112222 222111 125899999999999999999999999999999999999999998644443
Q ss_pred HhhhcCCCCee
Q 029141 171 KVQKVIWCPNY 181 (198)
Q Consensus 171 ~l~~~~~~~~~ 181 (198)
.+--+.++|++
T Consensus 167 ~~~~~~~~~~~ 177 (178)
T PRK07322 167 DVIYLAHLPLF 177 (178)
T ss_pred ceEeecccCCC
Confidence 33333466654
No 18
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.92 E-value=1.6e-23 Score=170.35 Aligned_cols=146 Identities=26% Similarity=0.325 Sum_probs=125.0
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcCC--CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeecc
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 109 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~~--~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~ 109 (198)
.|+|+..++.+|+.++.+++.+++++.+. ++|+|+|++.+|+++|..+|+.+++|+++.+|..+..+.
T Consensus 33 ~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~---------- 102 (202)
T PRK00455 33 YYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGE---------- 102 (202)
T ss_pred eeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCC----------
Confidence 68999999999999999999999999765 899999999999999999999999999998875431110
Q ss_pred ccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHHHHHH
Q 029141 110 GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYICTL 189 (198)
Q Consensus 110 ~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (198)
...++ ....+|++||||||+++||+|+.++++.|+++|++++++++++++. .++++.+.++ ++|++|++++..+
T Consensus 103 -~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~~~~~~-g~~~~sl~~~~~~ 176 (202)
T PRK00455 103 -GGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQEVFADA-GVPLISLITLDDL 176 (202)
T ss_pred -CceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHHHHHhc-CCcEEEEeeHHHH
Confidence 01111 2235799999999999999999999999999999999999999997 3677777776 9999999999998
Q ss_pred HHHH
Q 029141 190 LFVM 193 (198)
Q Consensus 190 ~~~~ 193 (198)
++..
T Consensus 177 ~~~~ 180 (202)
T PRK00455 177 LEYA 180 (202)
T ss_pred HHHH
Confidence 8764
No 19
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.92 E-value=8.4e-24 Score=190.54 Aligned_cols=151 Identities=21% Similarity=0.322 Sum_probs=131.9
Q ss_pred CC-CCCc---eeeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCcee
Q 029141 26 FP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 101 (198)
Q Consensus 26 ~~-~~g~---~~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~ 101 (198)
|. .+|. .|+|+..++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|+.+|..+|+|+++.||+.|.
T Consensus 305 F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~----- 379 (477)
T PRK05500 305 YVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKA----- 379 (477)
T ss_pred EEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCc-----
Confidence 44 4453 79999999999999999999999999877899999999999999999999999999999987652
Q ss_pred eeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCee
Q 029141 102 SEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNY 181 (198)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~ 181 (198)
++..+ +.++...+|++|+||||++|||+|+.++++.|+++|++++++++++++.+ ++++++.+. ++|++
T Consensus 380 -------~G~~~--~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~-g~~~~L~~~-gv~~~ 448 (477)
T PRK05500 380 -------HGTRR--LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ-GVKDKLQSH-GYQAY 448 (477)
T ss_pred -------cCCCc--eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc-chHHHHHhc-CCCEE
Confidence 22222 12344579999999999999999999999999999999999999999975 788999876 99999
Q ss_pred ehHHHHHHHHH
Q 029141 182 IYIYICTLLFV 192 (198)
Q Consensus 182 ~~~~~~~~~~~ 192 (198)
|++++.+++=.
T Consensus 449 Sl~tl~el~~~ 459 (477)
T PRK05500 449 SVLTISEITET 459 (477)
T ss_pred EEEEHHHHHHH
Confidence 99999988744
No 20
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=3.8e-23 Score=166.95 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=126.5
Q ss_pred CCCC-CCCc---eeeecHHHhcCHHHHHHHHHHHHHHhcC-CCccEEEeeCCcchHhHHHHHHHhC-CC-EEEEEcccCC
Q 029141 24 PDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIG-AK-FVPMRKPKKL 96 (198)
Q Consensus 24 ~~~~-~~g~---~~~d~~~~~~~~~~~~~i~~~La~~l~~-~~~d~Iv~v~~gG~~~A~~la~~L~-~p-~~~~rk~~~~ 96 (198)
++|+ .+|. .|+|+..+..+|+..+.++..+++.+.+ .++|+|+|++.+|+|+|+.+|..+. .| +.+.||..+-
T Consensus 19 G~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~ 98 (201)
T COG0461 19 GEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKD 98 (201)
T ss_pred CceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEeceecc
Confidence 4455 4443 7999999999999999999988888877 4899999999999999999999993 22 7777776542
Q ss_pred CCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcC
Q 029141 97 PGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVI 176 (198)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~ 176 (198)
++.+. ...+...+|++|+||||++|||+++.++++.++++|+.++++++++++. ..+.+.+.++
T Consensus 99 ------------hG~~~--~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-~~~~~~~~~~- 162 (201)
T COG0461 99 ------------HGTGG--LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ-SGAKEVLKEY- 162 (201)
T ss_pred ------------CCCcc--eeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-hhHHHHHHhc-
Confidence 22221 1223345999999999999999999999999999999999999999997 3556666665
Q ss_pred CCCeeehHHHHHHHHHH
Q 029141 177 WCPNYIYIYICTLLFVM 193 (198)
Q Consensus 177 ~~~~~~~~~~~~~~~~~ 193 (198)
++|++|++++.+|+..+
T Consensus 163 g~~~~sl~tl~dl~~~~ 179 (201)
T COG0461 163 GVKLVSLVTLSDLLEVL 179 (201)
T ss_pred CCceEEEeeHHHHHHHH
Confidence 99999999999998765
No 21
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.89 E-value=2.8e-22 Score=163.01 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=115.0
Q ss_pred CCCCceeeecHHHhcCHHHHHHHHHHHHHHhc--CCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeee
Q 029141 27 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE 104 (198)
Q Consensus 27 ~~~g~~~~d~~~~~~~~~~~~~i~~~La~~l~--~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~ 104 (198)
|.++-.|+|+..+..+|+.++.+++.|++.+. ..++|+|+|++.+|+++|+.+|+.+++|+...++++...+..
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~---- 124 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEG---- 124 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccc----
Confidence 34566799999999999999999999999874 357999999999999999999999999997766543211100
Q ss_pred eeeccccceEEEEec-ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeeh
Q 029141 105 YSLEYGKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIY 183 (198)
Q Consensus 105 ~~~~~~~~~~~l~~~-~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 183 (198)
....+.+ ..+ ...+|++|+||||++|||+|+.++++.|+++|+++++++++++++ +.+++ .++|++|+
T Consensus 125 ---~~~~~~~--~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~---g~~~~---~~vpv~sl 193 (200)
T PRK02277 125 ---EKKTGSF--SRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS---GIDEI---DGVPVYSL 193 (200)
T ss_pred ---cccccee--ccccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc---chhhh---cCCCeEEE
Confidence 0000111 111 236899999999999999999999999999999999999999985 44433 37999999
Q ss_pred HHHH
Q 029141 184 IYIC 187 (198)
Q Consensus 184 ~~~~ 187 (198)
+++.
T Consensus 194 ~~~~ 197 (200)
T PRK02277 194 IRVV 197 (200)
T ss_pred EEEE
Confidence 8754
No 22
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.89 E-value=8.2e-22 Score=158.67 Aligned_cols=133 Identities=26% Similarity=0.362 Sum_probs=112.2
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcCC--CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeecc
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 109 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~~--~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~ 109 (198)
.|+|+..++.||+.++.+++.|++++.+. ++|+|+|++.||+++|+.+|..+++|++..+|.+.
T Consensus 27 ~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~-------------- 92 (187)
T TIGR01367 27 YFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG-------------- 92 (187)
T ss_pred eeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC--------------
Confidence 79999999999999999999999999754 78999999999999999999999999987765431
Q ss_pred ccceEEEEec-ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHHH
Q 029141 110 GKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYI 186 (198)
Q Consensus 110 ~~~~~~l~~~-~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 186 (198)
...+..+ ...+|++||||||+++||+|+.++++.|+++|++++++++++++.+ +++ +..++|++|++++
T Consensus 93 ---~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~--~~~---~~~~~~~~sl~~~ 162 (187)
T TIGR01367 93 ---GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ--GGK---PDSGVPLMSLKEL 162 (187)
T ss_pred ---cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC--CCc---ccCCCCEEEEEEE
Confidence 1111112 2358999999999999999999999999999999999999999873 322 2337999998875
No 23
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1.8e-21 Score=161.45 Aligned_cols=156 Identities=18% Similarity=0.334 Sum_probs=116.4
Q ss_pred HHHHhccccccCCCCCCCceeeecHHHhcCH---HHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCC-EE
Q 029141 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDT---KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK-FV 88 (198)
Q Consensus 13 ~~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~---~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p-~~ 88 (198)
=..++.++|.+|+++ .|++.++.++ +.++.+++.|++++.+.++|+|+|++.+|+++|..+|++||++ ++
T Consensus 39 ~~~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~v 112 (233)
T PRK06031 39 GRQLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYV 112 (233)
T ss_pred CCEeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCce
Confidence 345777888888743 5788889987 5667899999999877789999999999999999999999974 45
Q ss_pred EEEcccCCCC--ce-e-eeeeeeccccceEEEEec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 029141 89 PMRKPKKLPG--EV-I-SEEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (198)
Q Consensus 89 ~~rk~~~~~~--~~-~-~~~~~~~~~~~~~~l~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~ 162 (198)
..++.++... .. . ..++......+.+.+... ...+|+|||||||+++||+|+++++++|+++|++++++++++.
T Consensus 113 pl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~ 192 (233)
T PRK06031 113 PLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAML 192 (233)
T ss_pred EEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEE
Confidence 5554333211 10 0 011110011223343322 2369999999999999999999999999999999999999999
Q ss_pred cCCchHHHHhhhc
Q 029141 163 LPELKVCLKVQKV 175 (198)
Q Consensus 163 ~~~~~~~~~l~~~ 175 (198)
+++ ++++++.+.
T Consensus 193 ~g~-~~~~~l~~~ 204 (233)
T PRK06031 193 QSE-RWRESLAAA 204 (233)
T ss_pred ccc-cHHHHHHhc
Confidence 874 788888764
No 24
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.84 E-value=4.5e-20 Score=144.19 Aligned_cols=140 Identities=20% Similarity=0.251 Sum_probs=112.9
Q ss_pred ceeeecHHHhcCHHHHHHHHHHHHH-Hhc--CCCccEEEeeCCcchHhHHHHHHHhCCCEEEEE--cccCCCCceeeeee
Q 029141 31 IMFQDITTLLLDTKAFRDTIDLFVE-RYK--DKNISVVAGIEARGFIFGPPIALAIGAKFVPMR--KPKKLPGEVISEEY 105 (198)
Q Consensus 31 ~~~~d~~~~~~~~~~~~~i~~~La~-~l~--~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~r--k~~~~~~~~~~~~~ 105 (198)
-.++|++++-..+..+++++..|+. .+. ..++|+|+|++..|+|+|+++|..||..+...+ |.++..+.-
T Consensus 53 Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~----- 127 (203)
T COG0856 53 DIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAG----- 127 (203)
T ss_pred ceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCC-----
Confidence 4789999999999999999999998 443 358999999999999999999999999997654 333321110
Q ss_pred eeccccceEEEEec-ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehH
Q 029141 106 SLEYGKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYI 184 (198)
Q Consensus 106 ~~~~~~~~~~l~~~-~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 184 (198)
..+.+ ..+ +.++||+|+||||++|||+|+.++++.|++.|++.+.+.+++++. |. ++..++|+.|++
T Consensus 128 ----~~G~i--S~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~---G~---dei~gvPi~sLl 195 (203)
T COG0856 128 ----KGGSI--SSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK---GV---DEIEGVPVESLL 195 (203)
T ss_pred ----cCcee--ecccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC---Cc---ccccCcchHHhh
Confidence 00111 222 348999999999999999999999999999999999999999985 44 455589999998
Q ss_pred HHH
Q 029141 185 YIC 187 (198)
Q Consensus 185 ~~~ 187 (198)
++.
T Consensus 196 ri~ 198 (203)
T COG0856 196 RIL 198 (203)
T ss_pred eee
Confidence 864
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.82 E-value=1.2e-19 Score=135.53 Aligned_cols=122 Identities=30% Similarity=0.435 Sum_probs=92.4
Q ss_pred HHhcCHHHHHHHHHHHHHHhcC--CCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEE
Q 029141 38 TLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 115 (198)
Q Consensus 38 ~~~~~~~~~~~i~~~La~~l~~--~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 115 (198)
+++.+|+.++.+++.+++++.+ .++|.|+|+++||+++|..+|+.++.|+....+...... . ..............
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYP-G-SDKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEES-E-EEEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccc-c-chhhhhccCceEEe
Confidence 3567999999999999999875 467789999999999999999999999987654321100 0 00000011111122
Q ss_pred EEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEE
Q 029141 116 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (198)
Q Consensus 116 l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~ 161 (198)
.......+|++||||||+++||+|+.++++.|+++|++++++++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2334557999999999999999999999999999999999999875
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.67 E-value=1e-15 Score=122.60 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=85.8
Q ss_pred HhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCCCEE--EEEcccCCCCceeeeeeeeccccce
Q 029141 39 LLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYGKDV 113 (198)
Q Consensus 39 ~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~ 113 (198)
.+.+++.+....+.|+.++.+ ...++|+|+..+|+.+|..+|+.+++|+. ..++.+....+.. ..-.
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~--------~~~~ 86 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTG--------GELV 86 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccC--------Ccee
Confidence 445677777777777776653 24579999999999999999999999863 2322221110000 0001
Q ss_pred EEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 029141 114 MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (198)
Q Consensus 114 ~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~ 164 (198)
+.......++|++|||||||+|||+|+.++++.|+++|++.+.++++++++
T Consensus 87 ~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~ 137 (181)
T PRK09162 87 WKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKT 137 (181)
T ss_pred EecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcC
Confidence 111112347999999999999999999999999999999999999999986
No 27
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.66 E-value=1.2e-15 Score=120.70 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=86.2
Q ss_pred hcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCCCEEE--EEcccCCCCceeeeeeeeccccceE
Q 029141 40 LLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVM 114 (198)
Q Consensus 40 ~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~ 114 (198)
+.+++.++...+.|+.++.+ .++++|+|+.+||+++|..+++.|++|... ..-+...... ...+..
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~---------~~~~~~ 72 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGM---------QSSGDV 72 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCC---------cccCce
Confidence 45777888888888877753 256899999999999999999999987532 2211000000 000111
Q ss_pred EE--EecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 115 EM--HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 115 ~l--~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
.. ......+||+||||||+++||+|+.++++.|++.|++.+.++++++++.
T Consensus 73 ~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 73 KILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred EEecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 11 1123468999999999999999999999999999999999999999973
No 28
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.66 E-value=1.7e-15 Score=118.63 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=85.9
Q ss_pred HhcCHHHHHHHHHHHHHHhcCC-CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEE
Q 029141 39 LLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH 117 (198)
Q Consensus 39 ~~~~~~~~~~i~~~La~~l~~~-~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (198)
.+.+++.++..++.|+.++.+. ++|+|+|+++||+.+|..++++|++|++...+- .+|.. .+++...+.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~---------ssY~~-~~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCI---------SSYDH-DNQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEE---------EEECC-CcCCcEEEe
Confidence 3568899999999999998653 589999999999999999999999997422111 11211 122234444
Q ss_pred ecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 118 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 118 ~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
.+...+|++||||||+++||.|++++++.+++ +.+++++.++.
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~ 120 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPA 120 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcC
Confidence 44456999999999999999999999999975 56888898873
No 29
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.66 E-value=2.5e-15 Score=121.16 Aligned_cols=120 Identities=22% Similarity=0.314 Sum_probs=90.4
Q ss_pred HHHhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCC---CEE--EEEcccCCCCceeeeeeeec
Q 029141 37 TTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA---KFV--PMRKPKKLPGEVISEEYSLE 108 (198)
Q Consensus 37 ~~~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~---p~~--~~rk~~~~~~~~~~~~~~~~ 108 (198)
...+.+++.++...+.|+.++.+ ..+++|+|+.+||+++|+.+++.++. |+. +.+..+. ...+
T Consensus 8 ~~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy-~~~~-------- 78 (189)
T PLN02238 8 EKVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSY-GGGT-------- 78 (189)
T ss_pred cEEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeec-CCCc--------
Confidence 34567888888888888887753 24689999999999999999999998 653 3332211 0000
Q ss_pred cccceEEEEe---cccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 109 YGKDVMEMHV---GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 109 ~~~~~~~l~~---~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
..++...+.. ....+|++||||||+++||.|+.++++.|++.|++++.++++++++.
T Consensus 79 ~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 79 ESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred cccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 0111222222 13479999999999999999999999999999999999999999973
No 30
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.62 E-value=7.8e-15 Score=117.28 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=88.4
Q ss_pred HHhcCHHHHHHHHHHHHHHhcC-----CCccEEEeeCCcchHhHHHHHHHhCCCEE--EEEcccCCCCceeeeeeeeccc
Q 029141 38 TLLLDTKAFRDTIDLFVERYKD-----KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYG 110 (198)
Q Consensus 38 ~~~~~~~~~~~i~~~La~~l~~-----~~~d~Iv~v~~gG~~~A~~la~~L~~p~~--~~rk~~~~~~~~~~~~~~~~~~ 110 (198)
.++.+.+.++...+.|+.++.+ ....+++|+.+||+.+|..+++.++.|.. +.+..+...+. .+
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~---------~~ 76 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGM---------ST 76 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCC---------cc
Confidence 4566778888777777776643 12469999999999999999999999853 33322110000 01
Q ss_pred cceEEEEec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 111 ~~~~~l~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
.+...+..+ ...+||+|||||||++||.||+++.+.+++.|++.+.++++++++.
T Consensus 77 ~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 77 TRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred cCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 112223322 3479999999999999999999999999999999999999999973
No 31
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=126.16 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=85.6
Q ss_pred HHhcCHHHHHHHHHHHHHHhc--CCCccEEEeeC-------CcchHhHHHHHHHhC----CCEEEEEcccCCCCceeeee
Q 029141 38 TLLLDTKAFRDTIDLFVERYK--DKNISVVAGIE-------ARGFIFGPPIALAIG----AKFVPMRKPKKLPGEVISEE 104 (198)
Q Consensus 38 ~~~~~~~~~~~i~~~La~~l~--~~~~d~Iv~v~-------~gG~~~A~~la~~L~----~p~~~~rk~~~~~~~~~~~~ 104 (198)
....+..+.+.+++.++..+. ...+|.||++| .+||+++..+|+.++ .|+...+++....+...+..
T Consensus 86 Kf~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~ 165 (225)
T COG1040 86 KFQGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKAL 165 (225)
T ss_pred hhCCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchH
Confidence 355667788888888888877 35799999998 689999888888775 44422222222122111111
Q ss_pred eeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 029141 105 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (198)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~ 163 (198)
-....-++.|.+..+...+ ++|+|||||+|||+|+.++.+.|++.|++.+.+++++..
T Consensus 166 ~rr~nl~~aF~~~~~~~~~-~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~ 223 (225)
T COG1040 166 ERRRNLKGAFRLKKGIEEP-KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARA 223 (225)
T ss_pred HHHHhccCCeecCCCCCCC-CeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEec
Confidence 1111122344443232222 899999999999999999999999999999999999854
No 32
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.61 E-value=2.3e-15 Score=121.31 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=80.3
Q ss_pred HhcCHHHHHHHHHHHHHHhcC---CCccEEEeeC-------CcchHhHHHHHHHhCCC---E--EEEEcccCCCCceeee
Q 029141 39 LLLDTKAFRDTIDLFVERYKD---KNISVVAGIE-------ARGFIFGPPIALAIGAK---F--VPMRKPKKLPGEVISE 103 (198)
Q Consensus 39 ~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~-------~gG~~~A~~la~~L~~p---~--~~~rk~~~~~~~~~~~ 103 (198)
...+.++.+.++..++..+.. ..+|.|+++| .+||+++..+|+.+... + ...+++. ..+...+.
T Consensus 54 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~ 132 (190)
T TIGR00201 54 FRGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKA 132 (190)
T ss_pred cCCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCH
Confidence 445677888888888766543 2368999998 59998877777765421 1 1222222 11111111
Q ss_pred eeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEE
Q 029141 104 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (198)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~ 161 (198)
.-+.....+.|.+..+ ..+|++|||||||+|||+|+.++.+.|+++|+..|.+++++
T Consensus 133 ~~R~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 133 TLRFLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 1111112334544322 36899999999999999999999999999999999999886
No 33
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.61 E-value=1.4e-14 Score=124.56 Aligned_cols=102 Identities=24% Similarity=0.279 Sum_probs=82.2
Q ss_pred CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
+.++|++|+.||..++..+|+.+++|+.+.+|++....+ .......+..++||+|+||||+++||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~------------~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRD------------VEISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEEeccCcccCCCEEEEEecccCcHHHH
Confidence 346899999999999999999999999888775531110 01111112346999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 141 SAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 141 ~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.++++.|+++||+.+.+++.|.....++.+++.+
T Consensus 228 ~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~ 261 (301)
T PRK07199 228 IEAARQLRAAGAASPDCVVVHALFAGDAYSALAA 261 (301)
T ss_pred HHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHh
Confidence 9999999999999999999999877777888754
No 34
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.60 E-value=1.9e-14 Score=122.96 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=82.4
Q ss_pred CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEE-ecccCCCCEEEEEeCcccchHH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH-VGAVQAGERALIVDDLVATGGT 139 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~gk~VLIVDDvvtTG~T 139 (198)
+.++|++++.||+++|..+|+.+++|+.+.+|.+....+ ..+. ....++|++|+||||+++||+|
T Consensus 154 ~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~--------------~~~~~~~~~v~Gk~VlIVDDIi~TG~T 219 (285)
T PRK00934 154 DDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTE--------------VEIAPKNLDVKGKDVLIVDDIISTGGT 219 (285)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCe--------------EEEeccccccCCCEEEEEcCccccHHH
Confidence 345999999999999999999999999887765431111 1111 1123689999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc
Q 029141 140 LSAAIRLLERVGVHVVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 140 l~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
+.++++.|++.||+.+.+++++.....++.+++.+.
T Consensus 220 l~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~ 255 (285)
T PRK00934 220 MATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNA 255 (285)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhC
Confidence 999999999999999999999988777888888764
No 35
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.58 E-value=2.1e-14 Score=113.02 Aligned_cols=122 Identities=22% Similarity=0.318 Sum_probs=93.9
Q ss_pred ecHHHhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCCCEEE--EEcccCCCCceeeeeeee-c
Q 029141 35 DITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSL-E 108 (198)
Q Consensus 35 d~~~~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~--~rk~~~~~~~~~~~~~~~-~ 108 (198)
++..++.+.+.++...+.+++++.+ .+..+++|+..|+++|+..+.++++.|..+ +.- ++|.. +
T Consensus 6 ~~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~v----------SSYg~~t 75 (178)
T COG0634 6 HIKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHV----------SSYGGGT 75 (178)
T ss_pred ccceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEE----------eccCCCc
Confidence 3455777888888888888877754 246699999999999999999999987643 211 11111 1
Q ss_pred cccceEEEEec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCc
Q 029141 109 YGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPEL 166 (198)
Q Consensus 109 ~~~~~~~l~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~ 166 (198)
.+++.+.+.++ ..++||+|||||||++||.||+.+.++|+..||+++.++++++++..
T Consensus 76 ~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~ 135 (178)
T COG0634 76 SSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPER 135 (178)
T ss_pred ccCCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCccc
Confidence 12233444443 45899999999999999999999999999999999999999999853
No 36
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.58 E-value=7.2e-15 Score=132.33 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE-EEcccCCCCcee-eeee--eeccccceEEEEecc
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI-SEEY--SLEYGKDVMEMHVGA 120 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~-~rk~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~ 120 (198)
.-..+++.|+++.+ .++|+|+++|..|+++|..+|+.+|+|+.. ..|. +..+.++ .... +....+..+... ..
T Consensus 258 ~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~-~~~~r~~i~~~q~~R~~~v~~k~~~~-~~ 334 (442)
T TIGR01134 258 ARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKN-RYVGRTFIMPTQELRELSVRLKLNPI-RE 334 (442)
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEe-ccccccccCCCHHHHHHHHhhhcccc-cc
Confidence 44578888887654 378999999999999999999999999964 2222 1112111 1000 000001122111 23
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEE-----------EecCC-------chHHHHhhhcCCCCeee
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV-----------IELPE-------LKVCLKVQKVIWCPNYI 182 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i-----------~~~~~-------~~~~~~l~~~~~~~~~~ 182 (198)
..+||+|+||||++|||+|++++++.|+++|++.+.+.+. ++.++ ....+++.+.++++..+
T Consensus 335 ~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~~~~~~i~~~~~~~~l~ 414 (442)
T TIGR01134 335 VFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANGRTVEEIAKEIGADSLA 414 (442)
T ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcCCCHHHHHHHhCCCEEE
Confidence 4689999999999999999999999999999999998766 44442 12346777888999999
Q ss_pred hHHHHHHHH
Q 029141 183 YIYICTLLF 191 (198)
Q Consensus 183 ~~~~~~~~~ 191 (198)
|+.+.+|.=
T Consensus 415 ~~~~~~l~~ 423 (442)
T TIGR01134 415 YLSLEGLKE 423 (442)
T ss_pred EecHHHHHH
Confidence 999988753
No 37
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.58 E-value=4.7e-14 Score=122.24 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=81.5
Q ss_pred CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
+..+||+|+.||..+|..+|+.+|.|+.+.+|++...... ....+.+ ...++||+|+||||++|||+|+
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~---------~~~~~~~--~gdv~Gr~viIVDDIidTG~Tl 233 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMN---------TSEVMNI--IGNVKGKKCILIDDMIDTAGTI 233 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCc---------eeEEEEe--ccccCCCEEEEEeeecCcHHHH
Confidence 3458999999999999999999999998877654311000 0001111 1236899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 141 SAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 141 ~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.++++.|++.||+.+.+++.|.....++.+++.+
T Consensus 234 ~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~ 267 (320)
T PRK02269 234 CHAADALAEAGATEVYASCTHPVLSGPALDNIQK 267 (320)
T ss_pred HHHHHHHHHCCCCEEEEEEECcccCchHHHHHHh
Confidence 9999999999999999999999977677788753
No 38
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.58 E-value=1.2e-14 Score=131.75 Aligned_cols=142 Identities=16% Similarity=0.248 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE-EEcccCCCCceee---eeeeeccccceEEEEecccC
Q 029141 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVIS---EEYSLEYGKDVMEMHVGAVQ 122 (198)
Q Consensus 47 ~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~-~rk~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~ 122 (198)
..+++.|++.+.. ++|+|+|+|..|.++|..+|+.+|+|+.. ..| .+..+.++. +..+...-+..|... ...+
T Consensus 272 ~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk-~~~~~rt~~~~~q~~R~~~vr~~f~~~-~~~~ 348 (484)
T PRK07272 272 KRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVK-NQYVARTFIQPTQELREQGVRMKLSAV-SGVV 348 (484)
T ss_pred HHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEE-EccCCccccCCCHHHHHHHHhhCcccc-cccc
Confidence 5788888876643 57999999999999999999999999843 222 222221111 100000111223221 2347
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEE-----------EecCCch-------HHHHhhhcCCCCeeehH
Q 029141 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV-----------IELPELK-------VCLKVQKVIWCPNYIYI 184 (198)
Q Consensus 123 ~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i-----------~~~~~~~-------~~~~l~~~~~~~~~~~~ 184 (198)
+||+|+||||++|||+|++++++.|+++|++.+.+++. ++.++.. ..+.+.++++++..+|+
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~~~dsl~~~ 428 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDIIGADSLTYL 428 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHhCCCEEEEe
Confidence 89999999999999999999999999999999999998 6665322 24677788899999999
Q ss_pred HHHHHHH
Q 029141 185 YICTLLF 191 (198)
Q Consensus 185 ~~~~~~~ 191 (198)
++.+|.=
T Consensus 429 ~~~~l~~ 435 (484)
T PRK07272 429 SVDGLIE 435 (484)
T ss_pred cHHHHHH
Confidence 9988753
No 39
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.57 E-value=4e-14 Score=112.84 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=85.6
Q ss_pred HHhcCHHHHHHHHHHHHHHhcC----CCccEEEeeCCcchHhHHHHHHHh----CCCE--EEEEcc-cCCCCceeeeeee
Q 029141 38 TLLLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAI----GAKF--VPMRKP-KKLPGEVISEEYS 106 (198)
Q Consensus 38 ~~~~~~~~~~~i~~~La~~l~~----~~~d~Iv~v~~gG~~~A~~la~~L----~~p~--~~~rk~-~~~~~~~~~~~~~ 106 (198)
..+.+++.++...+.|+.++.+ ..+++|+|+.+||+++|..+++.+ +.|+ ...+.. .+....
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~------- 76 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLT------- 76 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCcc-------
Confidence 4566889999999999988754 247899999999999999999999 5443 222211 110000
Q ss_pred eccccce-EE-EEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcC-CeEEEEEEEEecC
Q 029141 107 LEYGKDV-ME-MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVG-VHVVECACVIELP 164 (198)
Q Consensus 107 ~~~~~~~-~~-l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~G-a~~v~~~~i~~~~ 164 (198)
..+... .. .......+|++||||||+++||+|+.++++.|++.| ++.+.++++++++
T Consensus 77 -~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 77 -KKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred -ccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 000000 00 011223799999999999999999999999999999 7899999999884
No 40
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.57 E-value=6.2e-14 Score=114.75 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=89.7
Q ss_pred cHHHhcCHHHHHHHHHHHHHHhcC-C--------CccEEEeeCCcchHhHHHHHHHhC---CCEEE--EEcccCCCCcee
Q 029141 36 ITTLLLDTKAFRDTIDLFVERYKD-K--------NISVVAGIEARGFIFGPPIALAIG---AKFVP--MRKPKKLPGEVI 101 (198)
Q Consensus 36 ~~~~~~~~~~~~~i~~~La~~l~~-~--------~~d~Iv~v~~gG~~~A~~la~~L~---~p~~~--~rk~~~~~~~~~ 101 (198)
....+.+++.++...+.||.++.+ . ++++++|+.+||+++|+.|+++|+ .|+.. .+-
T Consensus 23 ~~~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~v--------- 93 (211)
T PTZ00271 23 SAHTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICA--------- 93 (211)
T ss_pred cccEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEE---------
Confidence 345677999888888888877653 1 367899999999999999999996 56422 211
Q ss_pred eeeeeec-cccceEEEEec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 102 SEEYSLE-YGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 102 ~~~~~~~-~~~~~~~l~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
.+|..+ .+.+.+.+..+ ..++||+|||||||++||.||+++++.|++.|++.+.++++++++.
T Consensus 94 -ssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~ 159 (211)
T PTZ00271 94 -SSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPS 159 (211)
T ss_pred -EecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEccc
Confidence 112101 11122333222 3479999999999999999999999999999999999999999974
No 41
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=2.6e-14 Score=128.78 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCE--EEEEcccCCCCceeeeeeeeccccceEEEEe-cc
Q 029141 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GA 120 (198)
Q Consensus 44 ~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~--~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 120 (198)
+..+.+++.|++.++. ++|+|+++|.+|++.|..+|+.+|+|+ ...||++. .........+....+.++.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~-~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYV-GRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeecc-ccccCCHHHHHHhhheeEEeccccc
Confidence 3555888888887753 688999999999999999999999998 34454321 1111111100011112233222 22
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~ 164 (198)
.++||+|+||||++|||+|+.++++.|+++||+.+.+++.+..-
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~ 380 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEI 380 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCc
Confidence 36899999999999999999999999999999999999888753
No 42
>PLN02440 amidophosphoribosyltransferase
Probab=99.54 E-value=5.9e-14 Score=127.52 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE--EEcccCCCCceeee-eeeeccccceEEEEe-cccC
Q 029141 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISE-EYSLEYGKDVMEMHV-GAVQ 122 (198)
Q Consensus 47 ~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~--~rk~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~ 122 (198)
..+++.|++.++. ++|+|+|+|.+|+++|..+|+.+|+|+.. .|.+. .+.++-. .........+..+.. ...+
T Consensus 262 ~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry--~~rt~i~~~q~~r~~~~~~k~~~~~~~v 338 (479)
T PLN02440 262 LEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHY--VGRTFIEPSQKIRDFSVKLKLNPVRSVL 338 (479)
T ss_pred HHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEee--ccccccCcchhhhhhhheeeeecccccc
Confidence 3677788876643 78999999999999999999999999853 33222 2222110 000000111122111 1337
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEec-----------CC-------chHHHHhhhcCCCCeeehH
Q 029141 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL-----------PE-------LKVCLKVQKVIWCPNYIYI 184 (198)
Q Consensus 123 ~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~-----------~~-------~~~~~~l~~~~~~~~~~~~ 184 (198)
+||+||||||++|||+|++++++.|+++||+.+.+++.... ++ ....+.+.++.++-...|+
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~~~~dsl~~l 418 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIGCDSLAFL 418 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999888631 11 1123455666677777777
Q ss_pred HHHHHH
Q 029141 185 YICTLL 190 (198)
Q Consensus 185 ~~~~~~ 190 (198)
.+..|.
T Consensus 419 ~~~~l~ 424 (479)
T PLN02440 419 PLEDLK 424 (479)
T ss_pred cHHHHH
Confidence 776654
No 43
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.54 E-value=1.4e-13 Score=118.76 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=82.2
Q ss_pred CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
+..+|++|+.||+.+|..+|+.+|+|+.+.+|.++..+. ...+.+ ....+|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~-----------~~~~~~--~~~~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV-----------SEVMNI--IGDVEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee-----------EEEEee--cccCCCCEEEEEecccCcHHHH
Confidence 567999999999999999999999999888765432110 011111 1236899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 141 SAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 141 ~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.++++.|++.|++.+.+++.|.....++.+++.+
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~ 258 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYATHPVLSGGAIERIEN 258 (309)
T ss_pred HHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhc
Confidence 9999999999999999999988877778888754
No 44
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.53 E-value=2.2e-13 Score=118.02 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=81.6
Q ss_pred CccEEEeeCCcchHhHHHHHHHhC-CCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT 139 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~T 139 (198)
+..+||+|+.||..+|..+|+.++ .|+....|++..... ...+. ....++||+|+||||+++||+|
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~-----------~~~~~--~~gdv~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANV-----------ATVMN--IIGDVQGKTCVLVDDLVDTAGT 232 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCc-----------eEEEe--cccCCCCCEEEEEecccCchHH
Confidence 345899999999999999999998 899888776532110 00111 1223799999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 140 LSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 140 l~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
+.++++.|+++||+.+.+++.|.....++.+++.+
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~ 267 (319)
T PRK04923 233 LCAAAAALKQRGALKVVAYITHPVLSGPAVDNINN 267 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhh
Confidence 99999999999999999999999987677777753
No 45
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.52 E-value=4.2e-13 Score=116.81 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=81.6
Q ss_pred ccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHH
Q 029141 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (198)
Q Consensus 62 ~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~ 141 (198)
..+|++|+.||+..|..+|+.+|.|+...+|++.... ....+.+ ....+|++|+||||+++||+|+.
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~-----------~~~~~~~--~gdv~Gk~VIIVDDIi~TG~Tl~ 235 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHN-----------VAESINV--LGEVKNKNCLIVDDMIDTGGTVI 235 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcc-----------eEeeEEe--eccCCCCEEEEEeccccchHHHH
Confidence 3489999999999999999999999988877653111 0111221 12369999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 142 AAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 142 ~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
++++.|+++||+.+.+++.|.....++.+++.+
T Consensus 236 ~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~ 268 (332)
T PRK00553 236 AAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDE 268 (332)
T ss_pred HHHHHHHHcCCcEEEEEEEeeecCchHHHHHHh
Confidence 999999999999999999999877777788753
No 46
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.52 E-value=1.1e-13 Score=115.28 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=90.7
Q ss_pred cHHHhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCC---ce-eeeeeeec
Q 029141 36 ITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG---EV-ISEEYSLE 108 (198)
Q Consensus 36 ~~~~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~---~~-~~~~~~~~ 108 (198)
+..++.+.+.++...+.||.++.+ ....+++|+.+||+.+++.|.+.++.......+....+- .+ ...+|.-+
T Consensus 53 ~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~ 132 (241)
T PTZ00149 53 LTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCND 132 (241)
T ss_pred ccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCC
Confidence 456788999999999999888763 256799999999999999999998621000000000000 11 11223211
Q ss_pred cccceEEEEec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC
Q 029141 109 YGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 165 (198)
Q Consensus 109 ~~~~~~~l~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~ 165 (198)
.+.+.+.+... ..++||+|||||||++||+|+.++++.|++.|++.+.++++++++.
T Consensus 133 ~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 133 ESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred CcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 22223333222 2479999999999999999999999999999999999999999873
No 47
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.52 E-value=4.2e-13 Score=115.59 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=80.6
Q ss_pred ccEEEeeCCcchHhHHHHHHHhC-CCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHH
Q 029141 62 ISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 62 ~d~Iv~v~~gG~~~A~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
..+||+|+.||+.+|..+|+.++ .|+.+.+|.+..... +... .......++||+|+||||+++||+|+
T Consensus 149 ~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~----------~~~~-~~~~~~dv~gr~viIVDDIi~TG~Tl 217 (304)
T PRK03092 149 NVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP----------NQVV-ANRVVGDVEGRTCVLVDDMIDTGGTI 217 (304)
T ss_pred CcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC----------CceE-EEecCcCCCCCEEEEEccccCcHHHH
Confidence 34999999999999999999999 899888765421100 0000 00112347999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 141 SAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 141 ~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.++++.|++.|++.+.+++.|.....++.+++.+
T Consensus 218 ~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~ 251 (304)
T PRK03092 218 AGAVRALKEAGAKDVIIAATHGVLSGPAAERLKN 251 (304)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHH
Confidence 9999999999999999999888876677788865
No 48
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.50 E-value=3.2e-13 Score=115.52 Aligned_cols=124 Identities=24% Similarity=0.302 Sum_probs=91.9
Q ss_pred eeec--HHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccc
Q 029141 33 FQDI--TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 110 (198)
Q Consensus 33 ~~d~--~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~ 110 (198)
|+|+ .+++..|.+.+++. +.+ ..+-.+||+|+.||...|..+|..||.|+.+..|+|. +...
T Consensus 138 fFdipvdnl~a~p~l~~~~~----~~~-~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~~~---------- 201 (314)
T COG0462 138 FFDIPVDNLYAAPLLAEYIR----EKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SSPN---------- 201 (314)
T ss_pred cCCCccccccchHHHHHHHH----Hhc-CCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CCCC----------
Confidence 4554 45665565544443 332 2222699999999999999999999999988877652 1110
Q ss_pred cceEEE-EecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 111 KDVMEM-HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 111 ~~~~~l-~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
..++ .....++||+|+||||+++||+|+..|+++|++.||+.+.+++.|......+.+++.+
T Consensus 202 --~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~ 264 (314)
T COG0462 202 --VVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEA 264 (314)
T ss_pred --eEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhc
Confidence 0111 1123479999999999999999999999999999999999999999877556677765
No 49
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.50 E-value=2.1e-13 Score=112.89 Aligned_cols=123 Identities=18% Similarity=0.278 Sum_probs=80.2
Q ss_pred HHhcCHHHHHHHHHHHHHHhc------C-CCccEEEeeC-------CcchHhHHHHHH----HhCCCEEE--EEcccCC-
Q 029141 38 TLLLDTKAFRDTIDLFVERYK------D-KNISVVAGIE-------ARGFIFGPPIAL----AIGAKFVP--MRKPKKL- 96 (198)
Q Consensus 38 ~~~~~~~~~~~i~~~La~~l~------~-~~~d~Iv~v~-------~gG~~~A~~la~----~L~~p~~~--~rk~~~~- 96 (198)
....+.++.+.+++.+++.+. . ..+|.|+++| .|||+.+..+|+ .+++|+.. ..+.+..
T Consensus 82 Ky~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~ 161 (227)
T PRK11595 82 KFSRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATA 161 (227)
T ss_pred HHCccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCC
Confidence 455677888888888875432 1 2579999998 469977665554 56787632 2222211
Q ss_pred CCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 029141 97 PGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (198)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~ 162 (198)
.+...+...+....++.+.+ ...++|++|||||||+|||+|+.++++.|+++|+..|.+++++.
T Consensus 162 ~q~~l~~~~R~~n~~~~f~~--~~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 162 TQHFLSARLRKRNLKNAFRL--ELPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred CcccCCHHHHhhhhhhhhcc--CCCCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 11111111111111223332 12368999999999999999999999999999999999999874
No 50
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.50 E-value=1.2e-13 Score=125.75 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeee-eccccceEEEE-ecccC
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYS-LEYGKDVMEMH-VGAVQ 122 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~ 122 (198)
.-..+++.|+++.. .++|+|+|+|..|+++|..+|+.+|+|+.....+++..+.++.+... .....-++.+. .....
T Consensus 297 ~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~ 375 (500)
T PRK07349 297 YRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVL 375 (500)
T ss_pred HHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeecccccc
Confidence 44577888876543 46899999999999999999999999996432222222222211110 00000111111 12346
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEE
Q 029141 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 159 (198)
Q Consensus 123 ~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~ 159 (198)
+||+|+||||++|||+|+++++++|+++||+.|.+..
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRI 412 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEe
Confidence 8999999999999999999999999999999987763
No 51
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.50 E-value=5.2e-13 Score=117.92 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=82.9
Q ss_pred CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccce-EEEEe-cccCCCCEEEEEeCcccchH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHV-GAVQAGERALIVDDLVATGG 138 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~~~gk~VLIVDDvvtTG~ 138 (198)
+..+||+|+.||...|..+|..+|.|+.+.+|++...... .+.+. ..... +..++|++|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 4569999999999999999999999999888775321110 01111 11111 22479999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 139 TLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 139 Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
|+..+++.|++.|++.+.+++.+.... ++.+++.+
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~ 313 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDK 313 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHh
Confidence 999999999999999999999999855 88888754
No 52
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=1.5e-13 Score=125.51 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEE-EcccCCCCceee---eeeeeccccceEEEE
Q 029141 42 DTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM-RKPKKLPGEVIS---EEYSLEYGKDVMEMH 117 (198)
Q Consensus 42 ~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~-rk~~~~~~~~~~---~~~~~~~~~~~~~l~ 117 (198)
+..+.+.+++.+.+.+...+.|+|+++|..|..+|..+|+.+++|+... .|.+ ..+.+.. +..+...-+..+...
T Consensus 274 r~~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~-~~~rt~i~~~q~~R~~~vr~~f~~~ 352 (501)
T PRK09246 274 RLRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNR-YVGRTFIMPGQAQRKKSVRQKLNAI 352 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEe-cccccccCcCHHHHHHHHHhhcCCc
Confidence 3444555555555454434579999999999999999999999998532 2211 1111111 000000011122211
Q ss_pred ecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC--------CchH----------HHHhhhcCCCC
Q 029141 118 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP--------ELKV----------CLKVQKVIWCP 179 (198)
Q Consensus 118 ~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~--------~~~~----------~~~l~~~~~~~ 179 (198)
...++||+|+||||++|||+|++++++.|+++||+.|.+++++..- +... .+.+.++.++=
T Consensus 353 -~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~eLia~~~~~e~i~~~ig~d 431 (501)
T PRK09246 353 -RAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTANELIAHGRTVEEIRQIIGAD 431 (501)
T ss_pred -cccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccccccCcccccCCCCHHHHhhcCCCHHHHHHHhCCC
Confidence 2347899999999999999999999999999999999999885421 1122 24445555665
Q ss_pred eeehHHHHHHH
Q 029141 180 NYIYIYICTLL 190 (198)
Q Consensus 180 ~~~~~~~~~~~ 190 (198)
...|+.+..|.
T Consensus 432 sl~yls~~~l~ 442 (501)
T PRK09246 432 GLIYQDLEDLI 442 (501)
T ss_pred eEeecCHHHHH
Confidence 56666655543
No 53
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.49 E-value=4.5e-13 Score=116.25 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=79.4
Q ss_pred ccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHH
Q 029141 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (198)
Q Consensus 62 ~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~ 141 (198)
..+|++|+.||..+|..+|+.+++|+...++++.... .. ...+ ...++||+|+||||+++||+|+.
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~-----------~~-~~~i--~gdV~gk~viIVDDIidTG~Tl~ 235 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSE-----------RE-EGYI--IGDVAGKKAILIDDILNTGKTFA 235 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCc-----------ce-eecc--ccccCCCEEEEEcceeCcHHHHH
Confidence 3589999999999999999999999987665432100 00 0011 12379999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 142 AAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 142 ~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
++++.|+++||+.+.+++.|.....++.+++.+
T Consensus 236 ~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~ 268 (323)
T PRK02458 236 EAAKIVEREGATEIYAVASHGLFAGGAAEVLEN 268 (323)
T ss_pred HHHHHHHhCCCCcEEEEEEChhcCchHHHHHhh
Confidence 999999999999999999999877677777754
No 54
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=3.4e-13 Score=122.44 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE--EEcccCCCCceeeeeeeeccccceEEEEec--
Q 029141 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHVG-- 119 (198)
Q Consensus 44 ~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 119 (198)
++-+.+++.|+++.+. ++|+|+|+|.+|+++|..+|+.+++|+.. .|++ +.+.++.+... ..+...+.++.+
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~--y~grt~i~~~q-~~r~~~v~~k~~~~ 354 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNH--YVGRTFIQPTQ-QIRNLGVKLKHNAN 354 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEe--ecCcccccccc-ccccccEEEEeccc
Confidence 4666788888876643 78999999999999999999999999963 3332 22222111100 001112333222
Q ss_pred -ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEE
Q 029141 120 -AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 159 (198)
Q Consensus 120 -~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~ 159 (198)
..++||+|+||||+++||+|+.++++.|+++||+.+.+.+
T Consensus 355 ~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 355 RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred ccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 3478999999999999999999999999999999988877
No 55
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.48 E-value=8e-13 Score=114.06 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=81.3
Q ss_pred CccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEE-ecccCCCCEEEEEeCcccchHH
Q 029141 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH-VGAVQAGERALIVDDLVATGGT 139 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~gk~VLIVDDvvtTG~T 139 (198)
+.++|++++.||+.+|..+|+.+|+|+...+|.+..... ..... .....+|++|+||||+++||+|
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~-------------~~~~~~~~~~v~g~~vliVDDii~tG~T 225 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATN-------------EVEVMNLVGDVEGKDVVIVDDIIDTGGT 225 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCC-------------EEEEEecccccCCCEEEEEccccCCHHH
Confidence 457999999999999999999999999888765531110 01111 1234699999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc
Q 029141 140 LSAAIRLLERVGVHVVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 140 l~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
+.++++.|++.|++.+.+++.+.....++.+++.+.
T Consensus 226 l~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~ 261 (308)
T TIGR01251 226 IAKAAEILKSAGAKRVIAAATHGVFSGPAIERIANA 261 (308)
T ss_pred HHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhC
Confidence 999999999999999999998876666777777653
No 56
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.47 E-value=2.9e-13 Score=122.79 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEE-EcccCCCCcee-eeeeeeccccceEEEEe-cccCC
Q 029141 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM-RKPKKLPGEVI-SEEYSLEYGKDVMEMHV-GAVQA 123 (198)
Q Consensus 47 ~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~-rk~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~ 123 (198)
..+|+.|+++.+ .+.|+|+++|.+|.++|..+|+.+|+|+... .+. +..+.++ ..+........++.... ...++
T Consensus 275 ~~~G~~La~~~~-~~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~-~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~ 352 (469)
T PRK05793 275 VRAGRQLYKEYP-VDADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKN-KYVGRTFIAPSQELRERAVRVKLNPLKVNVE 352 (469)
T ss_pred HHHHHHHHHhcC-CCCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEe-eeccccccChhHhhhhhhheEecccCccccC
Confidence 388888888764 3678999999999999999999999999642 222 1211111 10000000111222111 13368
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEec
Q 029141 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 163 (198)
Q Consensus 124 gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~ 163 (198)
||+|+||||+++||+|++++++.|+++||+.+.+++.+..
T Consensus 353 gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 353 GKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCC
Confidence 9999999999999999999999999999999999888764
No 57
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=109.05 Aligned_cols=112 Identities=20% Similarity=0.267 Sum_probs=81.1
Q ss_pred HhcCHHHHHHHHHHHHHHhc--CCCccEEEeeCCcchHhHHHHHHHhCC-CEEEEEcc-cCCCCceeeeeeeeccccceE
Q 029141 39 LLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGA-KFVPMRKP-KKLPGEVISEEYSLEYGKDVM 114 (198)
Q Consensus 39 ~~~~~~~~~~i~~~La~~l~--~~~~d~Iv~v~~gG~~~A~~la~~L~~-p~~~~rk~-~~~~~~~~~~~~~~~~~~~~~ 114 (198)
.+.+++.+..+++.+|+++. +..||+|+++.+||+.+|..+|+.|++ |+..+.-. ....+ ....+.
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~----------~~~~~~ 74 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETA----------ERDGEA 74 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhc----------ccCCcc
Confidence 35688999999999999997 368999999999999999999999998 55433211 11000 011122
Q ss_pred EEEec---ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEE
Q 029141 115 EMHVG---AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (198)
Q Consensus 115 ~l~~~---~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i 160 (198)
.+... ....|+||||||||.+||.||+.+.+.|++..+..+.++++
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 22221 11699999999999999999999999999955555543333
No 58
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.45 E-value=2.8e-13 Score=122.69 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE-EEcccCCCCceeeeee---eeccccceEEEEecc
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEY---SLEYGKDVMEMHVGA 120 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~-~rk~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 120 (198)
.-..+|+.|+++.. .++|+|+|+|..|.+.|..+|+.+|+|+.. ..|.+. .+.+..+.. +...-+..|... ..
T Consensus 268 ~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~-~~rt~~~~~~~~R~~~v~~~f~~~-~~ 344 (471)
T PRK06781 268 ARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRY-VGRTFIQPSQELREQGVKMKLSAV-RG 344 (471)
T ss_pred HHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEcc-CCCCCcCCCHHHHHHHHhcceecc-cc
Confidence 45588888887754 478999999999999999999999999964 222221 111111100 000112233322 23
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEE
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~ 161 (198)
.++||+|+||||++|||+|+++++++|+++||+.|.+..-.
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~s 385 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIAS 385 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECC
Confidence 47899999999999999999999999999999998877544
No 59
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=7.1e-13 Score=119.28 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE-EEcccCCCCceeeeeeeeccccceEEEEe-ccc
Q 029141 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAV 121 (198)
Q Consensus 44 ~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 121 (198)
+.-..+++.|+++.. .++|+|+++|..|..+|..+|+.+|+|+.. +.|.+ ..+.++....+.+ ....+.+.. ...
T Consensus 255 ~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r-~~~rtfi~~~qr~-~~~~~k~~~~~~~ 331 (442)
T PRK08341 255 SARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNR-YIGRTFIMPSGRE-LKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEec-cccccccCcCchh-hhheeeecccccc
Confidence 344578888887654 368999999999999999999999999964 33322 2222211110000 001111111 234
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~ 161 (198)
++||+|+||||++|||+|++++++.|+++||+.+.+.+-.
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcC
Confidence 6899999999999999999999999999999988877643
No 60
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.43 E-value=9.4e-13 Score=120.18 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEe---cc
Q 029141 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHV---GA 120 (198)
Q Consensus 44 ~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 120 (198)
+.-..+++.|+++.+ .+.|+|+|+|.+|++.|..+|+.+|+|+.....+.+..+.++....+. .....+.++. ..
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~-~r~~~~r~k~~~~~~ 363 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQT-IRQLGIRLKLNPLRE 363 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchh-hhhhceeeecCcccc
Confidence 345588888887654 478999999999999999999999999955322222222221111100 0111122222 23
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEE
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i 160 (198)
.++||+|+||||++|||+|++++++.|+++|++.+.+..-
T Consensus 364 ~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 364 VIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIS 403 (510)
T ss_pred ccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEC
Confidence 3699999999999999999999999999999998776543
No 61
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.43 E-value=1.2e-12 Score=118.76 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE-EEcccCCCCceeeeeeeeccccceEEEEec---c
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEYSLEYGKDVMEMHVG---A 120 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 120 (198)
.-..+++.|+++.+ .+.|+|+|+|..|.+.|..+|+.+|+|+.. ++|.+ ..+.++..... +.+...+.++.+ .
T Consensus 276 ~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r-~~~r~fi~~~q-~~R~~~~~~kl~~~~~ 352 (474)
T PRK06388 276 ARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNR-YSERTFIMPTQ-SDRKAAIKLKLNPIRE 352 (474)
T ss_pred HHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEec-ccCCcccCCch-hhhhhceeEEeccccc
Confidence 34478888887653 468999999999999999999999999954 22222 11111111000 001112223222 2
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEE
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 161 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~ 161 (198)
.++||+||||||++|||+|+++++++|+++||+.|.+..-+
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999999999999988776444
No 62
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.42 E-value=4.4e-12 Score=109.17 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=88.6
Q ss_pred HHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHh-CCCEEEEEcccCCCCceeeeeeeeccccceEE
Q 029141 37 TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 115 (198)
Q Consensus 37 ~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 115 (198)
.++...|..++++. +.....+.-+|++++.||.++|..+++.+ +.|+...+|++..... ...+
T Consensus 131 ~~l~~~~~~~~~i~----~~~~~~~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-----------~~~~- 194 (302)
T PLN02369 131 DHVYGQPVILDYLA----SKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVM- 194 (302)
T ss_pred ecccchHHHHHHHH----HhCCCCCceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-----------eeeE-
Confidence 45555555554443 22111122389999999999999999999 7899888776531110 0111
Q ss_pred EEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 116 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 116 l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.....++|++|+||||+++||+|+.++++.|++.|++.+.+++.|.....++.+++.+
T Consensus 195 -~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~ 252 (302)
T PLN02369 195 -NLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSS 252 (302)
T ss_pred -ecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHh
Confidence 1122368999999999999999999999999999999999999887777778888865
No 63
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.40 E-value=5.5e-12 Score=109.74 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=88.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhC-CCEEEEEcccCCCCceeeeeeeeccccceEE
Q 029141 37 TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVME 115 (198)
Q Consensus 37 ~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 115 (198)
.++...|.+.+++.+ . ..+-.+|++|+.||...|..+|+.++ .|+....|++..... ...+.
T Consensus 161 ~nl~~~~~l~~~i~~----~--~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-----------~~~~~ 223 (330)
T PRK02812 161 DHVYGSPVLLDYLAS----K--NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----------AEVLN 223 (330)
T ss_pred eeeeChHHHHHHHHh----c--CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-----------eeeEe
Confidence 455555555544322 1 12345999999999999999999995 899888775531100 00111
Q ss_pred EEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhh
Q 029141 116 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQ 173 (198)
Q Consensus 116 l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~ 173 (198)
+ ....+|++|+||||+++||+|+.++++.|++.|++.+.+++.|.....++.+++.
T Consensus 224 ~--~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~ 279 (330)
T PRK02812 224 V--IGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLS 279 (330)
T ss_pred c--cccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHh
Confidence 1 1236999999999999999999999999999999999999999887777788886
No 64
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.39 E-value=1e-12 Score=119.16 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE-EEcccCCCCceeeeee---eeccccceEEEEecc
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEY---SLEYGKDVMEMHVGA 120 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~-~rk~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 120 (198)
.-..+|+.|++... .++|+|+|+|..|.++|..+|+.+|+|+.. ..|.+ ..+.+..+.. +...-+..|... ..
T Consensus 268 ~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~-~~~Rt~i~~~~~~R~~nv~~~f~~~-~~ 344 (475)
T PRK07631 268 ARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNR-YVGRTFIQPSQALREQGVKMKLSPV-RG 344 (475)
T ss_pred HHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEe-cCCCCCcCCCHHHHHHHHhhhhhhc-cc
Confidence 44578888887654 468999999999999999999999999964 22221 1111111110 000011223221 23
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEe
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 162 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~ 162 (198)
.++||+|+||||++|||+|++++++.|+++||+.|.+..-..
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 478999999999999999999999999999999988775443
No 65
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.39 E-value=5.3e-12 Score=109.43 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=77.5
Q ss_pred ccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHH
Q 029141 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (198)
Q Consensus 62 ~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~ 141 (198)
-.+||+|+.||...+..++ .++|+.+..|++. +. ..........++||+|+||||+++||+|+.
T Consensus 184 ~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--g~------------~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~ 247 (326)
T PLN02297 184 NIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--GD------------KRIVRIKEGNPAGRHVVIVDDLVQSGGTLI 247 (326)
T ss_pred CcEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--CC------------ceEEEecccccCCCeEEEEecccCcHHHHH
Confidence 3489999999998877776 5789988877653 10 011111223479999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 142 AAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 142 ~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
++++.|++.|++.+.+++.|.....++.+++.+
T Consensus 248 ~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 248 ECQKVLAAHGAAKVSAYVTHGVFPNESWERFTH 280 (326)
T ss_pred HHHHHHHHCCCcEEEEEEECcccChhHHHHHHh
Confidence 999999999999999999999987778878764
No 66
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.33 E-value=2.3e-11 Score=108.81 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=81.1
Q ss_pred CccEEEeeCCcchHhHHHHHHHhC------CCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcc
Q 029141 61 NISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 134 (198)
Q Consensus 61 ~~d~Iv~v~~gG~~~A~~la~~L~------~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvv 134 (198)
...+||+|+.||...|..+|..++ +|+.+..|++....+. ..+.+ ...++|++|+||||++
T Consensus 279 ~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v-----------~~~~l--vgdV~Gk~vIIVDDII 345 (439)
T PTZ00145 279 YKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEI-----------EKMDL--VGNVYDSDVIIVDDMI 345 (439)
T ss_pred CccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCce-----------EEEec--cCCCCCCEEEEEccee
Confidence 345899999999999999999997 6888777765322111 01111 2347999999999999
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 135 tTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
+||+|+.++++.|++.||+.+.+++.|.....++.+++.+
T Consensus 346 dTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~ 385 (439)
T PTZ00145 346 DTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEA 385 (439)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhc
Confidence 9999999999999999999999999999887777888854
No 67
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.31 E-value=7e-12 Score=111.27 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEec---cc
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVG---AV 121 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~ 121 (198)
.-..+++.|+++.+ .+.|+|+|+|.+|.+.|..+|+++|+|+..-.-++++.+.|+-.+.+ +.+...+.++.+ ..
T Consensus 268 ~R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q-~~R~~~Vr~KLnpvr~~ 345 (470)
T COG0034 268 ARKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQ-ELREKGVRLKLNPVREV 345 (470)
T ss_pred HHHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcH-HHHHhhhhhhcCchHHH
Confidence 34478888887765 35699999999999999999999999996533333344444432211 011122223322 35
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 160 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i 160 (198)
++||||++|||.+-.|+|++..+++|+++||+.|.+..-
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 899999999999999999999999999999999887744
No 68
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.30 E-value=2.1e-11 Score=97.40 Aligned_cols=110 Identities=22% Similarity=0.236 Sum_probs=73.1
Q ss_pred cEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCC---C-------cee-eeeee------ecccc--ceEEEEecccCC
Q 029141 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP---G-------EVI-SEEYS------LEYGK--DVMEMHVGAVQA 123 (198)
Q Consensus 63 d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~---~-------~~~-~~~~~------~~~~~--~~~~l~~~~~~~ 123 (198)
-+||++..||...|+.+|+.|++.+....++++.. . +.. ..... ....+ ..+.+ -..++
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~v--VGDV~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNV--VGDVK 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEE--ES--T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEE--EEEcc
Confidence 48999999999999999999999998876654321 0 000 00000 00000 01111 13379
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 124 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 124 gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
||.++||||+++||+|+..+++.|++.||..+.+++.|...+.++.++|.+
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~ 133 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEE 133 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHH
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhh
Confidence 999999999999999999999999999999999999999988788888875
No 69
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.24 E-value=8e-11 Score=95.21 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHhCCCEE--EEEcccCCCCce-----eee------------ee
Q 029141 48 DTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEV-----ISE------------EY 105 (198)
Q Consensus 48 ~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L~~p~~--~~rk~~~~~~~~-----~~~------------~~ 105 (198)
..++.|++.+.. .+.-+|.++++||++.|..+|+.||.|+- ..||-..+.++- +.+ ++
T Consensus 9 dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~ 88 (220)
T COG1926 9 DAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSL 88 (220)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhc
Confidence 445555555543 23448999999999999999999999983 456755432110 000 01
Q ss_pred eec--c-----ccceEEE-------Ee-c--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchH
Q 029141 106 SLE--Y-----GKDVMEM-------HV-G--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKV 168 (198)
Q Consensus 106 ~~~--~-----~~~~~~l-------~~-~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~ 168 (198)
..+ + .++.-++ .. + ...+|++|+||||-+.||+||.++++.+++.+++.+.+++-+. ..+.
T Consensus 89 ~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~--p~~a 166 (220)
T COG1926 89 GIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVA--PEDA 166 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccC--CHHH
Confidence 000 0 0000010 11 1 2479999999999999999999999999999999988887664 3478
Q ss_pred HHHhhhcCCCCee
Q 029141 169 CLKVQKVIWCPNY 181 (198)
Q Consensus 169 ~~~l~~~~~~~~~ 181 (198)
.+.+..+ ...+.
T Consensus 167 ~~~l~s~-~D~vv 178 (220)
T COG1926 167 AAELESE-ADEVV 178 (220)
T ss_pred HHHHHhh-cCeEE
Confidence 8888765 33333
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.20 E-value=3.1e-10 Score=92.88 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=76.4
Q ss_pred cEEEeeCCcchHhHHHHHHHhC-CCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHHH
Q 029141 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (198)
Q Consensus 63 d~Iv~v~~gG~~~A~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~ 141 (198)
-++|++.++|++++..+++.++ .++......+.. .+ .+...........++|++|||+||+++||+|+.
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~t--------~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 141 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--ET--------LEPVEYYVKLPEDIDERTVIVVDPMLATGGSAI 141 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--CC--------CCCEEEEeeCCCcCCCCEEEEECCcccchHHHH
Confidence 3889999999999999999986 344433322210 00 000011112233478999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc-CCCCe
Q 029141 142 AAIRLLERVGVHVVECACVIELPELKVCLKVQKV-IWCPN 180 (198)
Q Consensus 142 ~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~-~~~~~ 180 (198)
.+++.|++.|++.+.+++++..+ .+.+++.+. .++.+
T Consensus 142 ~ai~~L~~~G~~~I~~~~ll~~~--~gl~~l~~~~p~v~i 179 (209)
T PRK00129 142 AAIDLLKKRGAKNIKVLCLVAAP--EGIKALEEAHPDVEI 179 (209)
T ss_pred HHHHHHHHcCCCEEEEEEEecCH--HHHHHHHHHCCCcEE
Confidence 99999999999999999998776 788888764 34433
No 71
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.15 E-value=6.8e-10 Score=90.76 Aligned_cols=106 Identities=22% Similarity=0.206 Sum_probs=76.1
Q ss_pred cEEEeeCCcchHhHHHHHHHhC-CCEEEEEcccCCCCceeeeeeeeccccceE-EEEecccCCCCEEEEEeCcccchHHH
Q 029141 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVM-EMHVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 63 d~Iv~v~~gG~~~A~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
-++|++.++|++++..+.+.+. .++....+.+. .. ..+... .......++|++|||+||+++||+|+
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~-~~----------t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl 138 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRN-EE----------TLKPVPYYSKLPEDIDERTVIVLDPMLATGGTM 138 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeC-CC----------CCCCEEEEecCCCCCCCCEEEEECCCccchHHH
Confidence 4788899999999999999886 34433322211 00 001111 11122347899999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh-cCCCCee
Q 029141 141 SAAIRLLERVGVHVVECACVIELPELKVCLKVQK-VIWCPNY 181 (198)
Q Consensus 141 ~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~-~~~~~~~ 181 (198)
..+++.|++.|++.+.+++++..+ .+.+++.+ +.++.++
T Consensus 139 ~~ai~~L~~~G~~~I~v~~ll~~~--~gl~~l~~~~p~v~i~ 178 (207)
T TIGR01091 139 IAALDLLKKRGAKKIKVLSIVAAP--EGIEAVEKAHPDVDIY 178 (207)
T ss_pred HHHHHHHHHcCCCEEEEEEEecCH--HHHHHHHHHCCCCEEE
Confidence 999999999999999999998776 78888876 3354443
No 72
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.08 E-value=1e-09 Score=92.87 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=96.3
Q ss_pred cHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEE
Q 029141 36 ITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 115 (198)
Q Consensus 36 ~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 115 (198)
+.+++..|..++++... ..+.+.-+|+.|+.||...++.+|..++..+....|.++... +... .
T Consensus 142 Vdnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~-----------~v~~-~ 205 (316)
T KOG1448|consen 142 VDNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKAN-----------EVDI-R 205 (316)
T ss_pred chhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhccc-----------ccce-E
Confidence 37899999887776643 344455689999999999999999999988776655432110 1111 1
Q ss_pred EEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc
Q 029141 116 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 116 l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
+..-..++|+.++||||+++|++|+..+.+.|.+.||+.|.+++.+...+.+.++++.+-
T Consensus 206 m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~s 265 (316)
T KOG1448|consen 206 MVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNES 265 (316)
T ss_pred EEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhhc
Confidence 111123799999999999999999999999999999999999999999888889988764
No 73
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.02 E-value=4.9e-09 Score=81.77 Aligned_cols=118 Identities=23% Similarity=0.325 Sum_probs=76.6
Q ss_pred hcCHHHHHHHHHHHHHHhcC----CCccEEEeeCCcchHhHHHHHHHhC------CCEEEEEcccCCCCceeeeeeeecc
Q 029141 40 LLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEY 109 (198)
Q Consensus 40 ~~~~~~~~~i~~~La~~l~~----~~~d~Iv~v~~gG~~~A~~la~~L~------~p~~~~rk~~~~~~~~~~~~~~~~~ 109 (198)
+.|++.++.....++.++.+ .+--+++|+.+||+++|..+++.++ +|+...-.. .+...+.. .
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt------~yRDDl~~-~ 78 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDIT------LYRDDLTQ-K 78 (179)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeE------Eeechhhh-c
Confidence 45677666555555555532 2333899999999999999998763 455322100 00000000 0
Q ss_pred cc-ce-EEEE-ecccCCCCEEEEEeCcccchHHHHHHHHHHHhcC-CeEEEEEEEEecC
Q 029141 110 GK-DV-MEMH-VGAVQAGERALIVDDLVATGGTLSAAIRLLERVG-VHVVECACVIELP 164 (198)
Q Consensus 110 ~~-~~-~~l~-~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~G-a~~v~~~~i~~~~ 164 (198)
+. .. ..-. ....+.||+|+||||++-||+|+++|++.|...| +..+..+|+++++
T Consensus 79 ~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG 137 (179)
T COG2065 79 GPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG 137 (179)
T ss_pred CccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCC
Confidence 00 00 0000 0123799999999999999999999999999998 4688999999986
No 74
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.88 E-value=3.2e-09 Score=92.57 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeee-e-ccc-cceEEEEecccCCC
Q 029141 48 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYS-L-EYG-KDVMEMHVGAVQAG 124 (198)
Q Consensus 48 ~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~-~-~~~-~~~~~l~~~~~~~g 124 (198)
.+++.||.. ...+.|+|+++|..|-.-|...|...|+||....-++++-+.++-+..+ . +.+ +..+... ....+|
T Consensus 279 ~~G~~LA~e-~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l-~~~~~G 356 (474)
T KOG0572|consen 279 QCGEQLATE-APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPL-RQNFEG 356 (474)
T ss_pred HHHhHhhhc-CCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccc-hhhcCC
Confidence 566666653 2368999999999999999999999999996543333444444322211 0 011 0112111 234799
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEE
Q 029141 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 125 k~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~ 158 (198)
|||+||||.+--|+|+...+++|+++||+.|...
T Consensus 357 KrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~r 390 (474)
T KOG0572|consen 357 KRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIR 390 (474)
T ss_pred ceEEEEecceeccCchHHHHHHHHHcCCcEEEEE
Confidence 9999999999999999999999999999988765
No 75
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.85 E-value=3e-08 Score=77.98 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=84.6
Q ss_pred eeecHHHhcCHHHHHHHHHHHHHHhcC---CCccEEEeeCCcchHhHHHHHHHh-C------CCEEE--EEcccCCCCce
Q 029141 33 FQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAI-G------AKFVP--MRKPKKLPGEV 100 (198)
Q Consensus 33 ~~d~~~~~~~~~~~~~i~~~La~~l~~---~~~d~Iv~v~~gG~~~A~~la~~L-~------~p~~~--~rk~~~~~~~~ 100 (198)
+-|++.++.-..++..-.+.||..+.+ ..+=+.+|+.+||+.+-+.+-+++ + +|+.. .|-+
T Consensus 29 ~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~k------- 101 (216)
T KOG3367|consen 29 TGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAK------- 101 (216)
T ss_pred cccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehh-------
Confidence 356666666667777777777766543 245588999999998888887775 2 34422 2211
Q ss_pred eeeeeeeccccceEEE-Eec--ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 029141 101 ISEEYSLEYGKDVMEM-HVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (198)
Q Consensus 101 ~~~~~~~~~~~~~~~l-~~~--~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~ 164 (198)
+|..+...+.+.+ ..+ ....||+|||||||++||+||....+.+++.+++.+.++.+..+.
T Consensus 102 ---SY~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Kr 165 (216)
T KOG3367|consen 102 ---SYCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKR 165 (216)
T ss_pred ---hhcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeecccc
Confidence 1111111112211 111 247999999999999999999999999999999999999999886
No 76
>PLN02541 uracil phosphoribosyltransferase
Probab=98.41 E-value=2.7e-06 Score=71.26 Aligned_cols=57 Identities=32% Similarity=0.454 Sum_probs=45.4
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCe--EEEEEEEEecCCchHHHHhhhc-CCCCe
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVH--VVECACVIELPELKVCLKVQKV-IWCPN 180 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~--~v~~~~i~~~~~~~~~~~l~~~-~~~~~ 180 (198)
.++++|+|+||++.||+|+.++++.|++.|++ .+.+++++.-+ .|.+++.+. .++.+
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~--~Gl~~i~~~fP~v~I 214 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP--PALKKLSEKFPGLHV 214 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH--HHHHHHHHHCcCCEE
Confidence 35789999999999999999999999999997 56666666544 788888764 34443
No 77
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.37 E-value=1e-05 Score=65.01 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred cHHHhc-----CHHHHHHHHHHHHHHhcC--CCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccC-CCCc----eeee
Q 029141 36 ITTLLL-----DTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK-LPGE----VISE 103 (198)
Q Consensus 36 ~~~~~~-----~~~~~~~i~~~La~~l~~--~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~-~~~~----~~~~ 103 (198)
++.+++ +|......+..|+.++.+ .++-++||-.+-+--+++.+++.++-...++...+. .++. .+.+
T Consensus 21 VSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~~~~~F~E 100 (191)
T PF15609_consen 21 VSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVPPLLEFEE 100 (191)
T ss_pred EecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCccceeeec
Confidence 555554 688999999999998875 367799999999999999999999854445544332 2331 1222
Q ss_pred eeeeccccceEEEEe-cccCCCCEEEEEeCcccchHHHHHHHHHHHhcCC-eEEEEEEEEecCCchHH---HHhhhcCCC
Q 029141 104 EYSLEYGKDVMEMHV-GAVQAGERALIVDDLVATGGTLSAAIRLLERVGV-HVVECACVIELPELKVC---LKVQKVIWC 178 (198)
Q Consensus 104 ~~~~~~~~~~~~l~~-~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga-~~v~~~~i~~~~~~~~~---~~l~~~~~~ 178 (198)
..+... ...++... +.....+.+++|||=+|||+|...+++.|++.-+ +.+.++++.+-.+...+ +.+.+..++
T Consensus 101 ~HSHAt-~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi 179 (191)
T PF15609_consen 101 EHSHAT-DHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEELGI 179 (191)
T ss_pred cccccc-cceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHHcCC
Confidence 222111 01122111 1234567999999999999999999999987644 56778888876543333 456666688
Q ss_pred Cee
Q 029141 179 PNY 181 (198)
Q Consensus 179 ~~~ 181 (198)
|+.
T Consensus 180 ~i~ 182 (191)
T PF15609_consen 180 PID 182 (191)
T ss_pred cEE
Confidence 865
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.95 E-value=0.00017 Score=58.98 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=69.6
Q ss_pred cEEEeeCCcchHhHHHHHHHhC-CCEEEEEcccCCCCceeeeeeeeccccceEEE-EecccCCCCEEEEEeCcccchHHH
Q 029141 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 63 d~Iv~v~~gG~~~A~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
-++|++.++|.++...+.+.+- .++....-.+.. +..+..++. +....+++++|+|+|-++.||+|+
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~-----------~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~ 137 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDE-----------ETLEPVLYYNKLPEDIENRKVILLDPMLATGGSA 137 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEET-----------TTSSEEEEEEE--TTGTTSEEEEEESEESSSHHH
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcC-----------CccceeeeHhhCCCCccCCEEEEEeccccchhhH
Confidence 3788889999999999988763 344322111100 001111221 223335889999999999999999
Q ss_pred HHHHHHHHhcCC--eEEEEEEEEecCCchHHHHhhh-cCCCCee
Q 029141 141 SAAIRLLERVGV--HVVECACVIELPELKVCLKVQK-VIWCPNY 181 (198)
Q Consensus 141 ~~a~~~L~~~Ga--~~v~~~~i~~~~~~~~~~~l~~-~~~~~~~ 181 (198)
..+++.|++.|. +.+.+++++.-+ .|.+++.+ +.++.++
T Consensus 138 ~~ai~~L~~~G~~~~~I~~v~~ias~--~Gl~~l~~~~P~v~I~ 179 (207)
T PF14681_consen 138 IAAIEILKEHGVPEENIIIVSVIASP--EGLERLLKAFPDVRIY 179 (207)
T ss_dssp HHHHHHHHHTTG-GGEEEEEEEEEEH--HHHHHHHHHSTTSEEE
T ss_pred HHHHHHHHHcCCCcceEEEEEEEecH--HHHHHHHHhCCCeEEE
Confidence 999999999887 566666666544 68888875 4455544
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.95 E-value=6.3e-05 Score=61.35 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=72.0
Q ss_pred EEEeeCCcchHhHHHHHHHhC-CCEEEEE-cccCCCCceeeeeeeeccccceEEE-EecccCCCCEEEEEeCcccchHHH
Q 029141 64 VVAGIEARGFIFGPPIALAIG-AKFVPMR-KPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGGTL 140 (198)
Q Consensus 64 ~Iv~v~~gG~~~A~~la~~L~-~p~~~~r-k~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gk~VLIVDDvvtTG~Tl 140 (198)
++|++.+.|..+...+...+- .+.-..- .+.+ +..+...+. +.....+++.|+|+|=++.||+|+
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rde------------et~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~ 140 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDE------------ETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSA 140 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecC------------ccCceehhHHhCCCcccCCeEEEECchhhccHhH
Confidence 568888999999998888752 1111110 0000 001111111 112347899999999999999999
Q ss_pred HHHHHHHHhc-CCeEEEEEEEEecCCchHHHHhhh-cCCCCee
Q 029141 141 SAAIRLLERV-GVHVVECACVIELPELKVCLKVQK-VIWCPNY 181 (198)
Q Consensus 141 ~~a~~~L~~~-Ga~~v~~~~i~~~~~~~~~~~l~~-~~~~~~~ 181 (198)
..+++.|++. |++.+.+++++..+ .|.+++.+ +.+++++
T Consensus 141 i~ai~~L~~~G~~~~I~~v~~vAap--eGi~~v~~~~p~v~I~ 181 (210)
T COG0035 141 IAAIDLLKKRGGPKNIKVVSLVAAP--EGIKAVEKAHPDVEIY 181 (210)
T ss_pred HHHHHHHHHhCCCceEEEEEEEecH--HHHHHHHHhCCCCeEE
Confidence 9999999999 88899999998876 68888876 4466665
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0076 Score=50.39 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=91.0
Q ss_pred eecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCC-----------CCceee
Q 029141 34 QDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL-----------PGEVIS 102 (198)
Q Consensus 34 ~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~-----------~~~~~~ 102 (198)
+.++|+--+|-+++++- +.+++....+||+-..+...-|+..|+.|.+.+....-+.+- +.++..
T Consensus 144 ~pvdnlraspfllqyiq----e~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~ 219 (354)
T KOG1503|consen 144 IPVDNLRASPFLLQYIQ----EEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVT 219 (354)
T ss_pred ccccccccCHHHHHHHH----HhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccc
Confidence 34466777787776665 445555566888888888899999999987776655432221 011111
Q ss_pred ee--eeec------cccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 103 EE--YSLE------YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 103 ~~--~~~~------~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.. .+.+ +.+..+.+. ..+.|+--++|||+++.--+.-++++.|++.||-.+.+.+.++.-+.++-..++|
T Consensus 220 ~t~~~~~~lp~~~~k~kppltvv--gdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lee 297 (354)
T KOG1503|consen 220 ATTHPSLELPAQISKEKPPLTVV--GDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEE 297 (354)
T ss_pred cccCccccCchhhcccCCCeEEE--eccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhc
Confidence 00 0000 011122221 2368889999999999999999999999999999999988888776667666665
Q ss_pred c
Q 029141 175 V 175 (198)
Q Consensus 175 ~ 175 (198)
.
T Consensus 298 s 298 (354)
T KOG1503|consen 298 S 298 (354)
T ss_pred C
Confidence 3
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=96.36 E-value=0.082 Score=44.88 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=67.5
Q ss_pred HhcCHHHHHHHHHHHHHHhcC------CCccEEEeeCC--cchHhHHHH-----HHHh-------CCC-EEEEEcccCCC
Q 029141 39 LLLDTKAFRDTIDLFVERYKD------KNISVVAGIEA--RGFIFGPPI-----ALAI-------GAK-FVPMRKPKKLP 97 (198)
Q Consensus 39 ~~~~~~~~~~i~~~La~~l~~------~~~d~Iv~v~~--gG~~~A~~l-----a~~L-------~~p-~~~~rk~~~~~ 97 (198)
.++|...++..|+.|++.+.. ..-|.||.+++ +.+|-|+.. -..| |.| .....-.+.
T Consensus 28 KfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~-- 105 (274)
T PF15610_consen 28 KFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRN-- 105 (274)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeeccc--
Confidence 689999999999999875532 23454555544 666544433 2223 333 322221111
Q ss_pred Cceeeeeee---eccc-----cceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEE
Q 029141 98 GEVISEEYS---LEYG-----KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (198)
Q Consensus 98 ~~~~~~~~~---~~~~-----~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~ 156 (198)
.+..+.|. .+.+ .+...+.+ ...+|+.|+.+|||-.||++-..+.+.+++.|++-..
T Consensus 106 -~ty~~DYg~Ls~edR~~li~nd~y~ID~-~~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~ 170 (274)
T PF15610_consen 106 -QTYCEDYGNLSFEDRKSLISNDTYHIDK-EFLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDF 170 (274)
T ss_pred -cCcccccccCCHHhhhccccCCceEecH-HHhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccE
Confidence 11111221 0100 11222222 2369999999999999999999999999999997533
No 82
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.11 Score=43.62 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=83.2
Q ss_pred eeeecHHHhcCHHHHHHHHHHHHHHhcC--CCccE--EEeeCCcc-hHhHHHHHHHhCCCEEEEEcccCCCCceeeeeee
Q 029141 32 MFQDITTLLLDTKAFRDTIDLFVERYKD--KNISV--VAGIEARG-FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYS 106 (198)
Q Consensus 32 ~~~d~~~~~~~~~~~~~i~~~La~~l~~--~~~d~--Iv~v~~gG-~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~ 106 (198)
.|.|.+. ...+..+..+++.++..+-+ ..+|+ +++++..| ..-+...++..+++.+.-+...+ ..... -.
T Consensus 64 i~~df~~-~~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~---g~~rk-~~ 138 (261)
T KOG1377|consen 64 IFFDFSL-FNSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIK---GLNRK-LL 138 (261)
T ss_pred eeecccc-cccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHH---HHhhh-cc
Confidence 3455543 34788899999999887653 46899 99999877 55566667777766554331100 00000 00
Q ss_pred eccccceEEEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC---------chHHHHhhhcCC
Q 029141 107 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE---------LKVCLKVQKVIW 177 (198)
Q Consensus 107 ~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~---------~~~~~~l~~~~~ 177 (198)
.+.+.+.. ...+..++|.+|+.||+.++|.-+++. ...-.-+.+.++.+..++++ ..+.+.|...|.
T Consensus 139 k~~~egG~--lllAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq~l~~tpgv~~d~~~d~lgqqy~ 214 (261)
T KOG1377|consen 139 KDHGEGGV--LLLAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQELIMTPGVELDAAGDNLGQQYR 214 (261)
T ss_pred ccCCCCce--EEEEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHHhhccCCCCccchhhcchhhhhc
Confidence 00111111 112335788899999966666666555 23333455666666666541 223456777778
Q ss_pred CCeeehH
Q 029141 178 CPNYIYI 184 (198)
Q Consensus 178 ~~~~~~~ 184 (198)
.|..++.
T Consensus 215 ~p~e~I~ 221 (261)
T KOG1377|consen 215 LPVEVIV 221 (261)
T ss_pred CcHHhhe
Confidence 8887765
No 83
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=89.33 E-value=7.1 Score=28.85 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=43.9
Q ss_pred CcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc--hH--HHHHHHH
Q 029141 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GG--TLSAAIR 145 (198)
Q Consensus 70 ~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT--G~--Tl~~a~~ 145 (198)
++.-.+|..+|..||.+......++.. .++.++.....++|++|+||-..... -. -+--+++
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~--------------dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~ 72 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFP--------------DGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLID 72 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-T--------------TS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcC--------------CCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHH
Confidence 344589999999999988654322221 12233333455789999999988875 22 2344677
Q ss_pred HHHhcCCeEEEEE
Q 029141 146 LLERVGVHVVECA 158 (198)
Q Consensus 146 ~L~~~Ga~~v~~~ 158 (198)
.++++|++.+..+
T Consensus 73 a~r~~~a~~i~~V 85 (116)
T PF13793_consen 73 ALRRAGAKRITLV 85 (116)
T ss_dssp HHHHTTBSEEEEE
T ss_pred HHHHcCCcEEEEe
Confidence 8889999876544
No 84
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=88.56 E-value=1.7 Score=35.62 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=39.9
Q ss_pred ccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCe--EEEEEEEEecCCchHHHHhhhc
Q 029141 120 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVH--VVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 120 ~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~--~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
..+-.++||+.=-++.||.|+-.|++.|++.|.. .+....++-.+ .+++.-+.++
T Consensus 185 pDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP-~gak~i~~~f 241 (267)
T KOG1017|consen 185 PDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITP-TGAKNITRKF 241 (267)
T ss_pred CcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecc-hhhHHHHHhC
Confidence 3467789999999999999999999999999974 44444555444 2334334443
No 85
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=82.12 E-value=22 Score=32.55 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=49.5
Q ss_pred cEEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc-hH-H-
Q 029141 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG-T- 139 (198)
Q Consensus 63 d~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT-G~-T- 139 (198)
+.++-.-.+.-.+|..+|..||+|......++...+ +..++....++|+.|+||-..... -. -
T Consensus 119 ~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDG--------------E~~Vri~e~VrG~dV~IVqS~~~pvNd~Lm 184 (439)
T PTZ00145 119 NAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADG--------------EVSMQFLESIRGKDVYIIQPTCPPVNENLI 184 (439)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCC--------------CEEEEECCCcCCCeEEEEecCCCCCcHHHH
Confidence 344444455568999999999998765433222222 223333344789999998875432 11 1
Q ss_pred -HHHHHHHHHhcCCeEEEEE
Q 029141 140 -LSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 140 -l~~a~~~L~~~Ga~~v~~~ 158 (198)
+--+++.++++||+.+.++
T Consensus 185 ELLllidAlr~agAkrItlV 204 (439)
T PTZ00145 185 ELLLMISTCRRASAKKITAV 204 (439)
T ss_pred HHHHHHHHHHHhccCeEEEE
Confidence 2335567788898765544
No 86
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.71 E-value=22 Score=31.20 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=50.3
Q ss_pred EEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc-hHH---
Q 029141 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT--- 139 (198)
Q Consensus 64 ~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT-G~T--- 139 (198)
.|++ -.+.-.+|..+|..+|++......++... ++.+++....++|+.|+||-..... ...
T Consensus 23 ~i~~-g~~~~~la~~ia~~lg~~l~~~~~~~FpD--------------GE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~e 87 (330)
T PRK02812 23 RLFS-GSSNPALAQEVARYLGMDLGPMIRKRFAD--------------GELYVQIQESIRGCDVYLIQPTCAPVNDHLME 87 (330)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCCceeeEEEECCC--------------CCEEEEeCCCCCCCEEEEECCCCCCccHHHHH
Confidence 3444 45567899999999999875543222212 2233333444789999999885432 222
Q ss_pred HHHHHHHHHhcCCeEEEEE
Q 029141 140 LSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 140 l~~a~~~L~~~Ga~~v~~~ 158 (198)
+--+++.++++|++.+.++
T Consensus 88 Lll~~~alr~~ga~ri~~V 106 (330)
T PRK02812 88 LLIMVDACRRASARQITAV 106 (330)
T ss_pred HHHHHHHHHHhCCceEEEE
Confidence 3456677889999865544
No 87
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=79.86 E-value=31 Score=29.76 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=47.0
Q ss_pred CcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchH-H--HHHHHHH
Q 029141 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG-T--LSAAIRL 146 (198)
Q Consensus 70 ~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~-T--l~~a~~~ 146 (198)
.+.-.+|..+|+.||+|......++...+ +..++....++|+.|+||-.....-. . +--.++.
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~dG--------------E~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFPDG--------------ESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 44468999999999999865433222122 22333334478999999988654222 2 3345677
Q ss_pred HHhcCCeEEEEE
Q 029141 147 LERVGVHVVECA 158 (198)
Q Consensus 147 L~~~Ga~~v~~~ 158 (198)
++++|++.+.++
T Consensus 75 lr~~~a~~i~~V 86 (301)
T PRK07199 75 ARELGARRVGLV 86 (301)
T ss_pred HHHcCCCeEEEE
Confidence 789999765443
No 88
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.82 E-value=24 Score=30.12 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=46.1
Q ss_pred cchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchH---HHHHHHHHH
Q 029141 71 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRLL 147 (198)
Q Consensus 71 gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~---Tl~~a~~~L 147 (198)
+.-.+|..+|..+|+|......++...++ .+++....++|++|+|+-..-.-.. -+.-.++.+
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~FpdGE--------------~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~al 72 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRFPDGE--------------LYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDAL 72 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEECCCCC--------------EEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 44589999999999998665433322222 2223233478999988876433222 133466778
Q ss_pred HhcCCeEEEEE
Q 029141 148 ERVGVHVVECA 158 (198)
Q Consensus 148 ~~~Ga~~v~~~ 158 (198)
+++|++.+...
T Consensus 73 r~~ga~~i~~v 83 (285)
T PRK00934 73 RDEGAKSITLV 83 (285)
T ss_pred HHcCCCeEEEE
Confidence 89999865543
No 89
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.21 E-value=35 Score=29.93 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc-hHH---HHHHH
Q 029141 69 EARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAI 144 (198)
Q Consensus 69 ~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT-G~T---l~~a~ 144 (198)
-.+.-.+|..+|+.+|+|......++...| +.+++....++|+.|+||-+.... ... +--.+
T Consensus 15 ~~~~~~La~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~ 80 (332)
T PRK00553 15 LSKAKKLVDSICRKLSMKPGEIVIQKFADG--------------ETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAI 80 (332)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHH
Confidence 344568999999999998865433222222 233333444689999998775432 111 33456
Q ss_pred HHHHhcCCeEEEEE
Q 029141 145 RLLERVGVHVVECA 158 (198)
Q Consensus 145 ~~L~~~Ga~~v~~~ 158 (198)
+.++++|++.+.++
T Consensus 81 ~alr~~~a~~i~~V 94 (332)
T PRK00553 81 DALKRGSAKSITAI 94 (332)
T ss_pred HHHHHcCCCeEEEE
Confidence 67788898765443
No 90
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=78.62 E-value=38 Score=29.51 Aligned_cols=80 Identities=10% Similarity=0.144 Sum_probs=48.5
Q ss_pred EEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc--h--HH
Q 029141 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--G--GT 139 (198)
Q Consensus 64 ~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT--G--~T 139 (198)
.|++ -.+.-.+|..+|..||++......++...+ +..++....++|+.|+||-..... - --
T Consensus 7 ~i~~-~~~~~~la~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~vrg~dV~iv~s~~~~~nd~lme 71 (320)
T PRK02269 7 KLFA-LSSNKELAEKVAQEIGIELGKSSVRQFSDG--------------EIQVNIEESIRGHHVFILQSTSSPVNDNLME 71 (320)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCCCCCEEEEEecCCCCccchHHH
Confidence 3444 344458999999999998765433222122 223333344789999998775321 1 12
Q ss_pred HHHHHHHHHhcCCeEEEEE
Q 029141 140 LSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 140 l~~a~~~L~~~Ga~~v~~~ 158 (198)
+--+++.|+++|++.+.++
T Consensus 72 lll~~~alr~~~a~~i~~V 90 (320)
T PRK02269 72 ILIMVDALKRASAESINVV 90 (320)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 4456677889999866443
No 91
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=78.26 E-value=21 Score=30.82 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=43.1
Q ss_pred HhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc--hHH--HHHHHHHHHh
Q 029141 74 IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GGT--LSAAIRLLER 149 (198)
Q Consensus 74 ~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT--G~T--l~~a~~~L~~ 149 (198)
.+|..+|+.+|+|......++...| +.+++....++|+.|+||-..... -.. +--.++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADG--------------EIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 4789999999998865433222222 223333344688999998886522 222 3445677788
Q ss_pred cCCeEEEE
Q 029141 150 VGVHVVEC 157 (198)
Q Consensus 150 ~Ga~~v~~ 157 (198)
+|++.+.+
T Consensus 68 ~~a~~i~~ 75 (302)
T PLN02369 68 ASAKRITA 75 (302)
T ss_pred cCCCeEEE
Confidence 99886543
No 92
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=78.00 E-value=29 Score=30.04 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=46.2
Q ss_pred CcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc-hHH---HHHHHH
Q 029141 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIR 145 (198)
Q Consensus 70 ~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT-G~T---l~~a~~ 145 (198)
.+.-.+|..+|..||.|......++...+ +..++....++|+.|+|+=..... ... +--+++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdG--------------E~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~ 72 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGRFSDG--------------EISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMID 72 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 34458999999999998865432222122 223333344689999999664322 111 345667
Q ss_pred HHHhcCCeEEEEE
Q 029141 146 LLERVGVHVVECA 158 (198)
Q Consensus 146 ~L~~~Ga~~v~~~ 158 (198)
.++++|++.+...
T Consensus 73 alr~~ga~~i~lV 85 (309)
T PRK01259 73 ALKRASAGRITAV 85 (309)
T ss_pred HHHHcCCceEEEE
Confidence 7889999865433
No 93
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=76.88 E-value=41 Score=29.28 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=47.8
Q ss_pred EEEeeCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchH----H
Q 029141 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG----T 139 (198)
Q Consensus 64 ~Iv~v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~----T 139 (198)
.|++- .+.-.+|..+|..+|+|......++...| +..++....++|+.|+||-..-.... =
T Consensus 8 ~i~~g-~~~~~La~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v~g~~V~iiqs~~~p~nd~lme 72 (319)
T PRK04923 8 LVFSG-NANKPLAQSICKELGVRMGKALVTRFSDG--------------EVQVEIEESVRRQEVFVIQPTCAPSAENLME 72 (319)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCcCCCeEEEEecCCCCCchHHHH
Confidence 34443 34458999999999998765433222122 23333344468999999866432211 1
Q ss_pred HHHHHHHHHhcCCeEEEEE
Q 029141 140 LSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 140 l~~a~~~L~~~Ga~~v~~~ 158 (198)
+--+++.++++|++.+.+.
T Consensus 73 Ll~~~~alr~~~a~~i~~V 91 (319)
T PRK04923 73 LLVLIDALKRASAASVTAV 91 (319)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 2345667789999866543
No 94
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.72 E-value=26 Score=30.27 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=43.6
Q ss_pred hHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc-h-HH--HHHHHHHHHhc
Q 029141 75 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-G-GT--LSAAIRLLERV 150 (198)
Q Consensus 75 ~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT-G-~T--l~~a~~~L~~~ 150 (198)
+|..+|..+|++......++... ++++++....++|+.|+||--.... . .- +--.++.++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~D--------------GE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFAN--------------GEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCC--------------CCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 47889999999876543322212 2233333445799999998775442 2 22 34566778899
Q ss_pred CCeEEEEE
Q 029141 151 GVHVVECA 158 (198)
Q Consensus 151 Ga~~v~~~ 158 (198)
|++.+.+.
T Consensus 67 ~a~~i~~V 74 (304)
T PRK03092 67 SAKRITVV 74 (304)
T ss_pred CCCeEEEE
Confidence 99865544
No 95
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=74.24 E-value=31 Score=29.77 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=44.2
Q ss_pred CcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEE-eCcccc-hH---HHHHHH
Q 029141 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIV-DDLVAT-GG---TLSAAI 144 (198)
Q Consensus 70 ~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIV-DDvvtT-G~---Tl~~a~ 144 (198)
.+.-.+|..+|+.+|.|......++...+ +.+++....++|+.|+|+ -..... -. =+.-.+
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdG--------------E~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~ 72 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLPLGDVEVKRFPDG--------------ELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMI 72 (308)
T ss_pred CCCHHHHHHHHHHhCCeeeeeEEEECCCC--------------CEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHH
Confidence 34458999999999998865533222222 223333344688899888 543211 11 234456
Q ss_pred HHHHhcCCeEEEE
Q 029141 145 RLLERVGVHVVEC 157 (198)
Q Consensus 145 ~~L~~~Ga~~v~~ 157 (198)
+.++++|++.+.+
T Consensus 73 ~a~r~~ga~~i~~ 85 (308)
T TIGR01251 73 DALKRASAKSITA 85 (308)
T ss_pred HHHHHcCCCeEEE
Confidence 7778899976543
No 96
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=70.07 E-value=29 Score=30.29 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=48.2
Q ss_pred cchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchH-H---HHHHHHH
Q 029141 71 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG-T---LSAAIRL 146 (198)
Q Consensus 71 gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~-T---l~~a~~~ 146 (198)
+.-.+|..+|+.||.|......++. ..+++.++-.+.++|+.|.|+...-.... . +--.++.
T Consensus 12 s~~~La~~ia~~l~~~l~~~~~~rF--------------~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA 77 (314)
T COG0462 12 SNPELAEKIAKRLGIPLGKVEVKRF--------------PDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDA 77 (314)
T ss_pred CCHHHHHHHHHHhCCCcccceeEEc--------------CCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 3347999999999998865432221 12233344455689999998766554222 1 2345677
Q ss_pred HHhcCCeEEEEEEE
Q 029141 147 LERVGVHVVECACV 160 (198)
Q Consensus 147 L~~~Ga~~v~~~~i 160 (198)
++++||+.+.+..-
T Consensus 78 ~k~asA~~It~ViP 91 (314)
T COG0462 78 LKRASAKRITAVIP 91 (314)
T ss_pred HHhcCCceEEEEee
Confidence 88999988766543
No 97
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=69.75 E-value=17 Score=31.49 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=44.1
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC-CchHHHHhhhc
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP-ELKVCLKVQKV 175 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~-~~~~~~~l~~~ 175 (198)
...|++|+||--=-.......+..++|+.+|+.+.+...+-+.. +....+++.+.
T Consensus 80 ~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~d~~~~~~l~~~ 135 (308)
T PF11382_consen 80 RLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFLDPEQADKLRSL 135 (308)
T ss_pred ccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhcChhhHHHHHHH
Confidence 37999999999666778899999999999999999999998764 23445555543
No 98
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=64.71 E-value=24 Score=26.32 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.+|++|+| +-+|++-++++..|.+.|++.+.+ +++...++ +.+.+
T Consensus 10 l~~~~vlv----iGaGg~ar~v~~~L~~~g~~~i~i---~nRt~~ra-~~l~~ 54 (135)
T PF01488_consen 10 LKGKRVLV----IGAGGAARAVAAALAALGAKEITI---VNRTPERA-EALAE 54 (135)
T ss_dssp GTTSEEEE----ESSSHHHHHHHHHHHHTTSSEEEE---EESSHHHH-HHHHH
T ss_pred cCCCEEEE----ECCHHHHHHHHHHHHHcCCCEEEE---EECCHHHH-HHHHH
Confidence 68999998 578999999999999999996644 57754333 34443
No 99
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.67 E-value=1e+02 Score=26.91 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=46.3
Q ss_pred eCCcchHhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccc-hHH---HHHH
Q 029141 68 IEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAA 143 (198)
Q Consensus 68 v~~gG~~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtT-G~T---l~~a 143 (198)
.-.+.-.+|..+|+.+|+|......++...+ +.+++....++|+.|+||-..... -.. +--.
T Consensus 14 ~~~~~~~la~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~ 79 (323)
T PRK02458 14 SLNSNLEIAEKIAQAAGVPLGKLSSRQFSDG--------------EIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIM 79 (323)
T ss_pred ECCCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 3345568999999999998755432222122 223333344689999998765322 112 2334
Q ss_pred HHHHHhcCCeEEEEE
Q 029141 144 IRLLERVGVHVVECA 158 (198)
Q Consensus 144 ~~~L~~~Ga~~v~~~ 158 (198)
++.++++|++.+.++
T Consensus 80 ~~alr~~~a~~i~lV 94 (323)
T PRK02458 80 IDACKRASANTVNVV 94 (323)
T ss_pred HHHHHHcCCceEEEE
Confidence 566789999765444
No 100
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=62.34 E-value=22 Score=29.04 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeeh
Q 029141 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIY 183 (198)
Q Consensus 135 tTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 183 (198)
.+|+.+++.++.+++.+-...-++++.++++..+.+.-.++ ++|++.+
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~-gIp~~~~ 55 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYAREN-GIPVLVY 55 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHh-CCCEEEe
Confidence 47899999999988876554457777888776666666665 9999754
No 101
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=59.06 E-value=20 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeeh
Q 029141 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIY 183 (198)
Q Consensus 135 tTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 183 (198)
-+|+.+.+.++.++.-....--.+++.++++..+.++-.+. ++|.+.+
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~-gIpt~~~ 56 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKA-GIPTVVL 56 (200)
T ss_pred CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHc-CCCEEEe
Confidence 47999999999999544334446667888877788877776 8887654
No 102
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=52.66 E-value=1.7e+02 Score=26.19 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=27.9
Q ss_pred EEEEecccCCCCEEEEEeCccc---------------chHHHHH---HHHHHHhcCCeEEEEE
Q 029141 114 MEMHVGAVQAGERALIVDDLVA---------------TGGTLSA---AIRLLERVGVHVVECA 158 (198)
Q Consensus 114 ~~l~~~~~~~gk~VLIVDDvvt---------------TG~Tl~~---a~~~L~~~Ga~~v~~~ 158 (198)
..++....++|+.|+||-.... .-..+-+ +++.++ +|++.+.++
T Consensus 67 ~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~V 128 (382)
T PRK06827 67 AKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVI 128 (382)
T ss_pred EEEEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEE
Confidence 3334344579999999998642 1222333 778888 999765544
No 103
>PRK12342 hypothetical protein; Provisional
Probab=50.14 E-value=59 Score=27.45 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCccEEEeeC----CcchHhHHHHHHHhCCCEEEE
Q 029141 48 DTIDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVPM 90 (198)
Q Consensus 48 ~i~~~La~~l~~~~~d~Iv~v~----~gG~~~A~~la~~L~~p~~~~ 90 (198)
..++.|+..+++.++|+|++=. ...-..+..+|..||.|++..
T Consensus 96 ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~ 142 (254)
T PRK12342 96 DTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINA 142 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEee
Confidence 3455555555555699888743 222357789999999998653
No 104
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=46.60 E-value=50 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=26.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~ 156 (198)
.+++.|+++++- |.....+...|++.|...+.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 578899999986 77888899999999976544
No 105
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=45.29 E-value=29 Score=27.53 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCEEEEEeCcccchHHHHHHH-HHHHhcCCeEEEEEEEEecCCchHHHHh
Q 029141 123 AGERALIVDDLVATGGTLSAAI-RLLERVGVHVVECACVIELPELKVCLKV 172 (198)
Q Consensus 123 ~gk~VLIVDDvvtTG~Tl~~a~-~~L~~~Ga~~v~~~~i~~~~~~~~~~~l 172 (198)
.| .=+||||++..+.-+..+. ++|. |..+..+.+.|+......|++-
T Consensus 82 aG-~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~ 129 (174)
T PF07931_consen 82 AG-NNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERA 129 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHH
T ss_pred CC-CCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHh
Confidence 45 4467899999998766666 6664 4555566666766544444443
No 106
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=44.57 E-value=86 Score=26.47 Aligned_cols=42 Identities=5% Similarity=0.014 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCccEEEeeC----CcchHhHHHHHHHhCCCEEE
Q 029141 48 DTIDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 48 ~i~~~La~~l~~~~~d~Iv~v~----~gG~~~A~~la~~L~~p~~~ 89 (198)
..++.|+..+++.++|+|++=. ...-..+..+|..||.|++.
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 4455555555555799888743 33336778999999999865
No 107
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=43.74 E-value=2.3e+02 Score=24.90 Aligned_cols=81 Identities=10% Similarity=-0.010 Sum_probs=47.3
Q ss_pred EEEeeCCcchHhHHHHHHHh-CCCEEEEEcccCCCCceeeeeeeeccccceEEEEecccCCCCEEEEEeCcccchHHH--
Q 029141 64 VVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL-- 140 (198)
Q Consensus 64 ~Iv~v~~gG~~~A~~la~~L-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvvtTG~Tl-- 140 (198)
.|++ -.+.-.+|..+|..+ |+|+.....++...+ +..+.+.....++|+.|+||--.... .-+
T Consensus 18 ~i~~-g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDG------------E~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmE 83 (326)
T PLN02297 18 HLFY-CEETEELARKIAAESDAIELGSINWRKFPDG------------FPNLFINNAHGIRGQHVAFLASFSSP-AVIFE 83 (326)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCCceeeeEEEECCCC------------CEEEEEcCCCCcCCCeEEEECCCCCC-hHHHH
Confidence 3444 345568999999986 788865543322222 11233332345789999998764433 222
Q ss_pred -HHHHHHHHhcCCeEEEEE
Q 029141 141 -SAAIRLLERVGVHVVECA 158 (198)
Q Consensus 141 -~~a~~~L~~~Ga~~v~~~ 158 (198)
--+++.|+++|++.+.++
T Consensus 84 LLl~~dAlr~~ga~~i~~V 102 (326)
T PLN02297 84 QLSVIYALPKLFVASFTLV 102 (326)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 234556688999866544
No 108
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=42.68 E-value=53 Score=21.70 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=26.4
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEE
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v 155 (198)
..+++.|++.+ .+|.....+...|++.|-+.+
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v 84 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNV 84 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCce
Confidence 35788999998 578888899999999998763
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=42.30 E-value=2.5e+02 Score=25.65 Aligned_cols=112 Identities=14% Similarity=0.245 Sum_probs=62.6
Q ss_pred cHHHhcCHHHHHHHHHHHHHHhcC--CCccEEEeeCCcch-HhHHHHHHHhCCCEEEEEcccCCCCceeeeeeeeccccc
Q 029141 36 ITTLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKD 112 (198)
Q Consensus 36 ~~~~~~~~~~~~~i~~~La~~l~~--~~~d~Iv~v~~gG~-~~A~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~ 112 (198)
+..+.++....+.+...+...... ...-++.|++..|= .+|..+|..++.+++...-........... .. .
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-----~i-~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-----VA-G 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-----HH-H
Confidence 567888888888887777654432 23446778887665 689999999987775542110000000000 00 0
Q ss_pred eEEEEecccC-CCCEEEEEeCc--ccch---HHHHHHHHHHHhcCCeE
Q 029141 113 VMEMHVGAVQ-AGERALIVDDL--VATG---GTLSAAIRLLERVGVHV 154 (198)
Q Consensus 113 ~~~l~~~~~~-~gk~VLIVDDv--vtTG---~Tl~~a~~~L~~~Ga~~ 154 (198)
... ...... .+++|+|+||+ ++.. ..+.+..+.+++.+...
T Consensus 87 ~~~-~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~i 133 (482)
T PRK04195 87 EAA-TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPI 133 (482)
T ss_pred Hhh-ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCE
Confidence 000 000111 35799999987 3321 44677788887665443
No 110
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=41.96 E-value=2.4e+02 Score=24.76 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=37.5
Q ss_pred eeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHh-CCCEEEE
Q 029141 33 FQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-GAKFVPM 90 (198)
Q Consensus 33 ~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L-~~p~~~~ 90 (198)
-++..+...|+..+..+++.+ ....+|+|+++.+ |.|+.+..+. ++|.++.
T Consensus 64 ~i~~~na~~~~~~a~~iarql----~~~~~dviv~i~t---p~Aq~~~s~~~~iPVV~a 115 (322)
T COG2984 64 KIDYQNAQGDLGTAAQIARQL----VGDKPDVIVAIAT---PAAQALVSATKTIPVVFA 115 (322)
T ss_pred EEEeecCCCChHHHHHHHHHh----hcCCCcEEEecCC---HHHHHHHHhcCCCCEEEE
Confidence 456777888888776666544 5567899999876 7777776665 6798775
No 111
>PRK05569 flavodoxin; Provisional
Probab=41.83 E-value=1.3e+02 Score=22.12 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCCCEEEEEeCcccc-hHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhh
Q 029141 122 QAGERALIVDDLVAT-GGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQK 174 (198)
Q Consensus 122 ~~gk~VLIVDDvvtT-G~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~ 174 (198)
.+||.+.++-=--.+ |..+....+.|++.|.++++.+.+...++....++..+
T Consensus 81 ~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~~~~~~ 134 (141)
T PRK05569 81 NENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEELNSAKE 134 (141)
T ss_pred cCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHHHHHHH
Confidence 367888777532222 45677788889999999988877766665555555554
No 112
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=39.95 E-value=52 Score=22.17 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=26.8
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~ 156 (198)
.+++.|+++.. +|.+...+...|++.|...+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 54 DRDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred CCCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 57888999988 888889999999999986543
No 113
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=39.75 E-value=59 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=24.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v 155 (198)
.++++|+++++ +|.....++..|++.|-+.+
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCE
Confidence 46788999986 67777778888999998644
No 114
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=39.63 E-value=1.5e+02 Score=29.66 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=24.0
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~ 156 (198)
.+|.+||++||--.. .....+.|++.|+.++.
T Consensus 687 l~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~~ 718 (894)
T PRK10618 687 LDGVTVLLDITSEEV---RKIVTRQLENWGATCIT 718 (894)
T ss_pred CCCCEEEEEeCCHHH---HHHHHHHHHHCCCEEEE
Confidence 578899999996654 44556688899988753
No 115
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=39.30 E-value=1.1e+02 Score=25.66 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=52.0
Q ss_pred eecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHh-C-CCEEEEEccc----CC------CCcee
Q 029141 34 QDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-G-AKFVPMRKPK----KL------PGEVI 101 (198)
Q Consensus 34 ~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L-~-~p~~~~rk~~----~~------~~~~~ 101 (198)
++..+.-.|++.+..+.+ .+...++|+|++..+.. +..+...+ + +|+++.--.. .+ ++..+
T Consensus 36 ~~~~~a~~d~~~~~~~~~----~l~~~~~DlIi~~gt~a---a~~~~~~~~~~iPVVf~~V~dp~~~~l~~~~~~~~~nv 108 (294)
T PF04392_consen 36 IEYKNAEGDPEKLRQIAR----KLKAQKPDLIIAIGTPA---AQALAKHLKDDIPVVFCGVSDPVGAGLVDSLDRPGKNV 108 (294)
T ss_dssp EEEEE-TT-HHHHHHHHH----HHCCTS-SEEEEESHHH---HHHHHHH-SS-S-EEEECES-TTTTTS-S-SSS--SSE
T ss_pred EEEecCCCCHHHHHHHHH----HHhcCCCCEEEEeCcHH---HHHHHHhcCCCcEEEEEeccChhhhhccccccCCCCCE
Confidence 345566678776655554 45566899999996543 34444444 4 7987753211 00 00011
Q ss_pred eeeeeeccccceEEEEecccCCCCEE-EEEeCcccc-hHHHHHHHHHHHhcCCeEEEE
Q 029141 102 SEEYSLEYGKDVMEMHVGAVQAGERA-LIVDDLVAT-GGTLSAAIRLLERVGVHVVEC 157 (198)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~gk~V-LIVDDvvtT-G~Tl~~a~~~L~~~Ga~~v~~ 157 (198)
+..+....-.+++.+-+.-.+.-++| +|.|+--++ ....+.+.+..++.|.+.+..
T Consensus 109 TGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~ 166 (294)
T PF04392_consen 109 TGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEI 166 (294)
T ss_dssp EEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEE
Confidence 10000000001111000112345888 566666553 355667777777888776543
No 116
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=38.49 E-value=58 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCccEEEeeCCc----chHhHHHHHHHhCCCEEE
Q 029141 48 DTIDLFVERYKDKNISVVAGIEAR----GFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 48 ~i~~~La~~l~~~~~d~Iv~v~~g----G~~~A~~la~~L~~p~~~ 89 (198)
..++.+++.+.+.++++|+...+. |-.++..+|..||.|++.
T Consensus 95 ~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 95 ATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 445555554444568988887654 779999999999998753
No 117
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.36 E-value=35 Score=28.39 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=27.7
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHH
Q 029141 134 VATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 134 vtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (198)
+-||+|....++.|-+.-.....+.+ +.. +......+.+ +++|+.++-.
T Consensus 26 lGTGST~~~fI~~Lg~~~~~e~~i~~-V~T-S~~t~~l~~~-~GI~v~~l~~ 74 (227)
T COG0120 26 LGTGSTAAYFIEALGRRVKGELDIGG-VPT-SFQTEELARE-LGIPVSSLNE 74 (227)
T ss_pred EcCcHHHHHHHHHHHHhhccCccEEE-EeC-CHHHHHHHHH-cCCeecCccc
Confidence 57999999999999631110112222 222 2234444444 4999987643
No 118
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=38.30 E-value=87 Score=21.88 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=18.1
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHhcC
Q 029141 123 AGERALIVDDLVATGGTLSAAIRLLERVG 151 (198)
Q Consensus 123 ~gk~VLIVDDvvtTG~Tl~~a~~~L~~~G 151 (198)
.+.+||+||| .-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5678999999 4444555666666677
No 119
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=36.05 E-value=58 Score=27.08 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHHhcCCe-EEEEEEEEecCCchHHHHhhhcCCCCeeehHH
Q 029141 134 VATGGTLSAAIRLLERVGVH-VVECACVIELPELKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 134 vtTG~Tl~~a~~~L~~~Ga~-~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (198)
+-||+|...+++.|.+.... ...+.+ +.. + ...+.+.+..++|+.++-.
T Consensus 27 LGTGSTv~~~i~~L~~~~~~~~l~i~~-Vpt-S-~~t~~~a~~~Gipl~~l~~ 76 (228)
T PRK13978 27 IGTGSTMELLLPQMAQLIKERGYNITG-VCT-S-NKIAFLAKELGIKICEIND 76 (228)
T ss_pred eCchHHHHHHHHHHHHHhhccCccEEE-EeC-c-HHHHHHHHHcCCcEechhh
Confidence 57999999999888664321 112222 233 2 3333444344999887644
No 120
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=35.20 E-value=85 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCccEEEeeC-CcchHhHHHHHHHhCCCEEE
Q 029141 48 DTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 48 ~i~~~La~~l~~~~~d~Iv~v~-~gG~~~A~~la~~L~~p~~~ 89 (198)
..++.+++.+.+.++++|+... ..|-.++..+|..||.|++.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 4555555555555689877765 56778999999999998854
No 121
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.91 E-value=85 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeee
Q 029141 136 TGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYI 182 (198)
Q Consensus 136 TG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~ 182 (198)
+|+.+.++.+.+.+.+....-++++.+.++..+.+...+. ++|++.
T Consensus 11 ~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~-gIp~~~ 56 (200)
T PRK05647 11 NGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA-GIPTFV 56 (200)
T ss_pred CChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc-CCCEEE
Confidence 3888899999988765322223344565554555454454 899865
No 122
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.47 E-value=1.1e+02 Score=29.36 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCccEEEeeCCcchHh-HHHHHHHhCC--CEEE
Q 029141 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGA--KFVP 89 (198)
Q Consensus 45 ~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~-A~~la~~L~~--p~~~ 89 (198)
.+..+.+.+.+.+.+.+||++|.++.-||++ -..-++..|+ |+++
T Consensus 294 ~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 294 KLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3334455555666667999999999999964 2334466685 8765
No 123
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=34.29 E-value=86 Score=21.29 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=25.0
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHhc--CCeEEEEEE
Q 029141 125 ERALIVDDLVATGGTLSAAIRLLERV--GVHVVECAC 159 (198)
Q Consensus 125 k~VLIVDDvvtTG~Tl~~a~~~L~~~--Ga~~v~~~~ 159 (198)
..+.+++|.-.+=.+++++.+.+++. +.+.+.++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 35777888999999999999999987 345555554
No 124
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=34.28 E-value=1e+02 Score=26.48 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHH
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVC 169 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~ 169 (198)
.+|++|+| +-+|++.++++-.|.+.|++.+.+ +++....++
T Consensus 124 ~~~~~vli----lGAGGAarAv~~aL~~~g~~~i~V---~NRt~~ra~ 164 (283)
T COG0169 124 VTGKRVLI----LGAGGAARAVAFALAEAGAKRITV---VNRTRERAE 164 (283)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEE---EeCCHHHHH
Confidence 46899998 678999999999999999875544 477644444
No 125
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=33.69 E-value=60 Score=24.74 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCccEEEeeC-CcchHhHHHHHHHhCCCEEE
Q 029141 42 DTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 42 ~~~~~~~i~~~La~~l~~~~~d~Iv~v~-~gG~~~A~~la~~L~~p~~~ 89 (198)
+++ ..++.+++.+.+.++|+|+... ..|-.++..+|..||.|++.
T Consensus 74 ~~~---~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 74 DPE---AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp -HH---HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred CHH---HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 455 3444444444445788777665 46667999999999999865
No 126
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=33.36 E-value=18 Score=29.60 Aligned_cols=12 Identities=58% Similarity=0.689 Sum_probs=10.2
Q ss_pred eCcccchHHHHH
Q 029141 131 DDLVATGGTLSA 142 (198)
Q Consensus 131 DDvvtTG~Tl~~ 142 (198)
=|++.||+|+++
T Consensus 149 vDiv~TG~TLr~ 160 (204)
T PRK13584 149 VDIVQTGTTLKA 160 (204)
T ss_pred EEEECccHHHHH
Confidence 389999999875
No 127
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=33.13 E-value=1e+02 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=26.5
Q ss_pred CCccEEEeeCCcc-hHhHHHHHHHhCCCEEEE
Q 029141 60 KNISVVAGIEARG-FIFGPPIALAIGAKFVPM 90 (198)
Q Consensus 60 ~~~d~Iv~v~~gG-~~~A~~la~~L~~p~~~~ 90 (198)
.++|+|+|+-.|- +..|..+|..+++||+..
T Consensus 83 ~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 83 DGADVVIGVGGGKTIDTAKAAAYRLGLPFISV 114 (360)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 5689999997665 479999999999999865
No 128
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=33.11 E-value=3.5e+02 Score=24.02 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=63.0
Q ss_pred cCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchH--hHHHHHHHhCCCEEEEEccc--CCC-Cceeeeeeee-ccccceE
Q 029141 41 LDTKAFRDTIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAIGAKFVPMRKPK--KLP-GEVISEEYSL-EYGKDVM 114 (198)
Q Consensus 41 ~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~--~A~~la~~L~~p~~~~rk~~--~~~-~~~~~~~~~~-~~~~~~~ 114 (198)
.+++.+...-+.+-+. .+.++|.|++++.||++ .-...|-.+|+|++..---. .++ +.+ .+.+ ......+
T Consensus 76 p~g~e~~ra~e~~~~~-~~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqMt---Tf~~~g~~~tPl 151 (357)
T COG3535 76 PNGDEAIRAFEVLEDY-LGKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQMT---TFYLHGLPATPL 151 (357)
T ss_pred CCcHHHHHHHHHHHHH-hCCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEEE---EEEEcCCCCCce
Confidence 3455554555555443 34589999999999984 33345667899997542111 111 111 0100 0011111
Q ss_pred EEEecccCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEE
Q 029141 115 EMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 115 ~l~~~~~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~ 158 (198)
.+ ...+|.++++ -.++...+-+.++...-+.|+....+.
T Consensus 152 vi---~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~~a~ 190 (357)
T COG3535 152 VI---CDERGNRVII--ETVSNKWAERIARAATVEMGGSAAVAL 190 (357)
T ss_pred EE---EecCCCEEEE--EeecchhHHHHHHHHHHHcCCeEEEEE
Confidence 11 1246655555 888899999999999999998754333
No 129
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=32.97 E-value=97 Score=24.78 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeee
Q 029141 136 TGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYI 182 (198)
Q Consensus 136 TG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~ 182 (198)
+|+.+..+++.+.+.+-..--++++.++++..+.+...+. ++|++.
T Consensus 10 ~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~-gip~~~ 55 (190)
T TIGR00639 10 NGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQA-GIPTFV 55 (190)
T ss_pred CChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHc-CCCEEE
Confidence 3888888888887755432233345666554455555554 888874
No 130
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=31.89 E-value=21 Score=29.37 Aligned_cols=12 Identities=58% Similarity=0.728 Sum_probs=10.2
Q ss_pred eCcccchHHHHH
Q 029141 131 DDLVATGGTLSA 142 (198)
Q Consensus 131 DDvvtTG~Tl~~ 142 (198)
=|++.||+||++
T Consensus 159 vDivsTG~TLr~ 170 (215)
T PRK01686 159 VDIVETGNTLRA 170 (215)
T ss_pred EEeecChHHHHH
Confidence 389999999875
No 131
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.22 E-value=93 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.3
Q ss_pred CCCccEEEeeCCcc--hHhHHHHHHHhCCCEEEEEcc
Q 029141 59 DKNISVVAGIEARG--FIFGPPIALAIGAKFVPMRKP 93 (198)
Q Consensus 59 ~~~~d~Iv~v~~gG--~~~A~~la~~L~~p~~~~rk~ 93 (198)
+.++|++|+-++|| +.-=...|+.+|+|++.+++.
T Consensus 188 ~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 188 QHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred HcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 34799999999988 443345688899999887643
No 132
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=31.19 E-value=21 Score=28.15 Aligned_cols=11 Identities=64% Similarity=0.836 Sum_probs=9.7
Q ss_pred CcccchHHHHH
Q 029141 132 DLVATGGTLSA 142 (198)
Q Consensus 132 DvvtTG~Tl~~ 142 (198)
|++.||+||++
T Consensus 112 Div~TG~TLr~ 122 (163)
T PF01634_consen 112 DIVETGTTLRA 122 (163)
T ss_dssp EEESSSHHHHH
T ss_pred EeccCcHHHHH
Confidence 89999999875
No 133
>PRK10200 putative racemase; Provisional
Probab=30.59 E-value=85 Score=25.80 Aligned_cols=51 Identities=20% Similarity=0.096 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHH
Q 029141 132 DLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 132 DvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (198)
|.-.-+.-|.+.++.|+++|++.+.++ |+.. +-..+.+.+.+++|+.+.+.
T Consensus 56 ~~~~~~~~l~~~~~~L~~~g~~~ivia--CNTa-h~~~~~l~~~~~iPii~ii~ 106 (230)
T PRK10200 56 EWDKTGDILAEAALGLQRAGAEGIVLC--TNTM-HKVADAIESRCSLPFLHIAD 106 (230)
T ss_pred CcchHHHHHHHHHHHHHHcCCCEEEEC--CchH-HHHHHHHHHhCCCCEeehHH
Confidence 333456789999999999999866555 4553 34568888877999998776
No 134
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=30.24 E-value=23 Score=29.43 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=10.0
Q ss_pred CcccchHHHHH
Q 029141 132 DLVATGGTLSA 142 (198)
Q Consensus 132 DvvtTG~Tl~~ 142 (198)
|++.||+||++
T Consensus 177 DivsTG~TLr~ 187 (228)
T PRK13583 177 DITSTGETLRA 187 (228)
T ss_pred hhhchhHHHHH
Confidence 89999999875
No 135
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=28.79 E-value=19 Score=21.77 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.4
Q ss_pred CcccchHHHHHHHHHHHhc
Q 029141 132 DLVATGGTLSAAIRLLERV 150 (198)
Q Consensus 132 DvvtTG~Tl~~a~~~L~~~ 150 (198)
.+.|.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5679999999999988864
No 136
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=28.25 E-value=1.2e+02 Score=23.46 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 158 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~ 158 (198)
.+||+|+|+-|- -|---.+..+.++..|+.++...
T Consensus 3 l~gkKviiiGdR--DGiPgpAie~c~~~~gaevvfs~ 37 (150)
T PF04723_consen 3 LEGKKVIIIGDR--DGIPGPAIEECVKTAGAEVVFSS 37 (150)
T ss_pred cCCcEEEEEecC--CCCCcHHHHHHHHhcCceEEEEe
Confidence 589999999773 34444556666788899987644
No 137
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=27.87 E-value=25 Score=30.32 Aligned_cols=11 Identities=64% Similarity=0.878 Sum_probs=9.7
Q ss_pred CcccchHHHHH
Q 029141 132 DLVATGGTLSA 142 (198)
Q Consensus 132 DvvtTG~Tl~~ 142 (198)
|+++||+||++
T Consensus 161 DivsTG~TLka 171 (290)
T COG0040 161 DIVSTGTTLKA 171 (290)
T ss_pred EeecCCHhHHH
Confidence 89999999874
No 138
>PLN02384 ribose-5-phosphate isomerase
Probab=27.60 E-value=85 Score=26.74 Aligned_cols=49 Identities=14% Similarity=0.001 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHHhcCCeE-EE-EEEEEecCCchHHHHhhhcCCCCeeehHH
Q 029141 134 VATGGTLSAAIRLLERVGVHV-VE-CACVIELPELKVCLKVQKVIWCPNYIYIY 185 (198)
Q Consensus 134 vtTG~Tl~~a~~~L~~~Ga~~-v~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (198)
+-||+|...+++.|.+....- .. +.+ +.. +...+....++ ++|+.++-.
T Consensus 55 LGTGSTv~~~I~~La~r~~~~~l~~I~~-VpT-S~~T~~~a~~~-GIpl~~l~~ 105 (264)
T PLN02384 55 LGTGSTAKHAVDRIGELLRQGKLKNIIG-IPT-SKKTHEQAVSL-GIPLSDLDS 105 (264)
T ss_pred ecchHHHHHHHHHHHHhhhhccccceEE-EcC-cHHHHHHHHHc-CCcEecccc
Confidence 579999999998887654321 11 222 222 32344444454 999887644
No 139
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=27.58 E-value=29 Score=21.30 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=16.3
Q ss_pred CchHHHHHhccccccCCCCCCCceeeecHH
Q 029141 9 QDPRIAGISSAIRVIPDFPKPGIMFQDITT 38 (198)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~g~~~~d~~~ 38 (198)
..+|+..|+..+.. | .+.|+|+++
T Consensus 2 ~~dDi~~L~~~fsl-p-----~~~Y~DIsr 25 (44)
T PF10945_consen 2 FQDDIAALSQAFSL-P-----DINYIDISR 25 (44)
T ss_pred chhHHHHHHHHhCC-C-----CccHHHHHH
Confidence 34678888877665 4 456888864
No 140
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=27.41 E-value=1.1e+02 Score=23.76 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCccEEEeeC-CcchHhHHHHHHHhCCCEEE
Q 029141 48 DTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 48 ~i~~~La~~l~~~~~d~Iv~v~-~gG~~~A~~la~~L~~p~~~ 89 (198)
..++.+++.+.+.++++|+... ..|-.++..+|..||.|++.
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 4445555555545688777765 46668999999999998854
No 141
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=27.34 E-value=1.3e+02 Score=20.46 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCe
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVH 153 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~ 153 (198)
.+++.|+++ ..+|.....+.+.|++.|.+
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 467788886 55787788899999999986
No 142
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=27.33 E-value=28 Score=27.88 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=10.8
Q ss_pred EeCcccchHHHHH
Q 029141 130 VDDLVATGGTLSA 142 (198)
Q Consensus 130 VDDvvtTG~Tl~~ 142 (198)
|=|++.||+|+++
T Consensus 152 IvDiv~TG~TL~~ 164 (182)
T TIGR00070 152 IVDIVSTGTTLRE 164 (182)
T ss_pred EEEEeCCHHHHHH
Confidence 3479999999987
No 143
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.23 E-value=2e+02 Score=20.81 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCC----CeeehHHHHHHHHH
Q 029141 125 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWC----PNYIYIYICTLLFV 192 (198)
Q Consensus 125 k~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~ 192 (198)
|+||| +..|.....+++.+++.|.+.+.+.+=-+..+ ...+.-++.|.. +..+|+++..++-+
T Consensus 3 kkvLI----anrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s-~~~~~ad~~~~~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 3 KKVLI----ANRGEIAVRIIRALRELGIETVAVNSNPDTVS-THVDMADEAYFEPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SEEEE----SS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTG-HHHHHSSEEEEEESSSGGGTTTSHHHHHHH
T ss_pred CEEEE----ECCCHHHHHHHHHHHHhCCcceeccCchhccc-ccccccccceecCcchhhhhhccHHHHhhH
Confidence 46676 67899999999999999999766664222211 112222333333 34566777666544
No 144
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=27.15 E-value=1.1e+02 Score=25.80 Aligned_cols=40 Identities=35% Similarity=0.468 Sum_probs=30.7
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchH
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKV 168 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~ 168 (198)
.+|++|+| +-+|++-++++..|.+.|+..+.+ +++...++
T Consensus 123 ~~~k~vlv----lGaGGaarai~~aL~~~G~~~i~I---~nRt~~ka 162 (282)
T TIGR01809 123 LAGFRGLV----IGAGGTSRAAVYALASLGVTDITV---INRNPDKL 162 (282)
T ss_pred cCCceEEE----EcCcHHHHHHHHHHHHcCCCeEEE---EeCCHHHH
Confidence 47889997 478999999999999999875444 46653333
No 145
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=26.84 E-value=72 Score=26.51 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcC
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVG 151 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~G 151 (198)
...|++|||+-+ |.|+++.++.|....
T Consensus 171 l~~Gk~VlI~AH----GNSlRaLiK~L~~iS 197 (230)
T COG0588 171 LKSGKNVLIVAH----GNSLRALIKYLEGIS 197 (230)
T ss_pred HhCCCeEEEEec----chhHHHHHHHHhCCC
Confidence 468999999766 999999999998754
No 146
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=26.74 E-value=87 Score=24.07 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc
Q 029141 137 GGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 137 G~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
-.-++.+.++|+++|++.+.....++- +|.+.|.++
T Consensus 105 d~dI~~~~~~L~eaGa~~IF~~s~~d~---~gv~~l~~~ 140 (148)
T COG4917 105 DADISLVKRWLREAGAEPIFETSAVDN---QGVEELVDY 140 (148)
T ss_pred hHhHHHHHHHHHHcCCcceEEEeccCc---ccHHHHHHH
Confidence 355789999999999999888877654 577777664
No 147
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=26.71 E-value=44 Score=25.03 Aligned_cols=37 Identities=22% Similarity=0.552 Sum_probs=29.9
Q ss_pred CCCCCCceeeecHHHhcC-HHHHHHHHHHHHHHhcCCC
Q 029141 25 DFPKPGIMFQDITTLLLD-TKAFRDTIDLFVERYKDKN 61 (198)
Q Consensus 25 ~~~~~g~~~~d~~~~~~~-~~~~~~i~~~La~~l~~~~ 61 (198)
..|.||++|.++.++... +..+..+...|.+++.+.+
T Consensus 14 ~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~ 51 (122)
T cd03572 14 DEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS 51 (122)
T ss_pred CCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC
Confidence 467799989999766655 6889999999999998655
No 148
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.52 E-value=98 Score=21.79 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=23.7
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v 155 (198)
.+|++|||| -.|.....-++.|.++|+++.
T Consensus 5 l~~~~vlVv----GgG~va~~k~~~Ll~~gA~v~ 34 (103)
T PF13241_consen 5 LKGKRVLVV----GGGPVAARKARLLLEAGAKVT 34 (103)
T ss_dssp -TT-EEEEE----EESHHHHHHHHHHCCCTBEEE
T ss_pred cCCCEEEEE----CCCHHHHHHHHHHHhCCCEEE
Confidence 689999985 559999999999999998753
No 149
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.80 E-value=1.8e+02 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHhcCCCccEEEeeCCcchHhHH-HHHHHhCCCEEEE
Q 029141 55 ERYKDKNISVVAGIEARGFIFGP-PIALAIGAKFVPM 90 (198)
Q Consensus 55 ~~l~~~~~d~Iv~v~~gG~~~A~-~la~~L~~p~~~~ 90 (198)
+.+.+.+||+|+++..-|+++.. .-|+.+|+|++..
T Consensus 83 ~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 83 QLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 44556789999999988887432 2456679998764
No 150
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.75 E-value=1.6e+02 Score=20.21 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=24.1
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v 155 (198)
.+++.|++..+ +|..-..++..|++.|.+.+
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v 89 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNV 89 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcce
Confidence 47788999875 67666778888999998643
No 151
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=48 Score=31.97 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.2
Q ss_pred EeeCCcc-hHhHHHHHHHhCCCEEEE
Q 029141 66 AGIEARG-FIFGPPIALAIGAKFVPM 90 (198)
Q Consensus 66 v~v~~gG-~~~A~~la~~L~~p~~~~ 90 (198)
=|||.-| =.+|.++|.++++||.-+
T Consensus 229 HGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 229 HGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred eCCCCccHHHHHHHHhhhcCCceEee
Confidence 3444333 379999999999999754
No 152
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=25.15 E-value=1.1e+02 Score=25.34 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHhcCCe
Q 029141 136 TGGTLSAAIRLLERVGVH 153 (198)
Q Consensus 136 TG~Tl~~a~~~L~~~Ga~ 153 (198)
|-+|++++...+++..+.
T Consensus 31 ~A~~~~ea~~~i~~~~pD 48 (224)
T COG4565 31 TAGTLEEAKMIIEEFKPD 48 (224)
T ss_pred eeccHHHHHHHHHhhCCC
Confidence 445566666666655443
No 153
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=24.60 E-value=96 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=29.8
Q ss_pred CcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhc
Q 029141 132 DLVATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKV 175 (198)
Q Consensus 132 DvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~ 175 (198)
|...+..-++.+.+.|+.+|++.+... -. ....|.++|.++
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~v--S~-~~~eGi~eL~~~ 140 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEV--SA-VTGEGIEELKDY 140 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEE--EC-CCCcCHHHHHHH
Confidence 555567889999999999999976333 22 234677888775
No 154
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=23.81 E-value=3.9e+02 Score=22.52 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.2
Q ss_pred hcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhH-HHHHHHhCCCEEE
Q 029141 40 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFG-PPIALAIGAKFVP 89 (198)
Q Consensus 40 ~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A-~~la~~L~~p~~~ 89 (198)
-.+|+.....++.|.+ +.++++|+|.-..+...+ ..++...++|++.
T Consensus 49 ~~~p~~a~~~~~~Li~---~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 49 QSDNERYQQYAQRLAL---QDKVDVVWGGISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCEEEeCcchHHHHHHHHHHHhcCceEEe
Confidence 4578877777776653 357999999987776444 5577778999875
No 155
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=23.41 E-value=2.1e+02 Score=22.07 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 159 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~ 159 (198)
.+||+|+|+-|= -|--=-+.-+.++..|+.++...+
T Consensus 4 l~gKkviiiGdR--DGiPgpAie~c~k~~gaevvfs~T 39 (154)
T PRK13265 4 LEGKKVIIIGDR--DGIPGPAIEECVKTTGAEVVFSST 39 (154)
T ss_pred ccCcEEEEEecC--CCCCcHHHHHHHhccCceEEEEee
Confidence 478898888762 233333344445668999876543
No 156
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=23.22 E-value=66 Score=25.17 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=16.5
Q ss_pred EEEEeCcccchHHHHHHHHHHH
Q 029141 127 ALIVDDLVATGGTLSAAIRLLE 148 (198)
Q Consensus 127 VLIVDDvvtTG~Tl~~a~~~L~ 148 (198)
=+|+|=..-||+|+.+|.++=+
T Consensus 193 diVlDpF~GSGTT~~aa~~l~R 214 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELGR 214 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT-
T ss_pred eeeehhhhccChHHHHHHHcCC
Confidence 4679999999999999887533
No 157
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.12 E-value=3.8e+02 Score=22.70 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=35.0
Q ss_pred hcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE
Q 029141 40 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 40 ~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~ 89 (198)
-.+|......++.|.+ +.+++.|+++...+...+..++...++|++.
T Consensus 53 ~~~p~~a~~~~~~li~---~~~v~~iiG~~~s~~~~~~~~~~~~~ip~i~ 99 (347)
T cd06336 53 KYDPAEAAANARRLVQ---QDGVKFILGPIGGGITAAQQITERNKVLLLT 99 (347)
T ss_pred CCCHHHHHHHHHHHHh---hcCceEEEeCCCCchhhhhhhhhhcCceEEe
Confidence 4678877777766653 3478999999877776667788888998875
No 158
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=22.99 E-value=6e+02 Score=23.43 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=39.1
Q ss_pred cccccCCCCCCCce-------eeecHHHhcCHHHHHHHHHHHHHHhcCCCccEEEeeC--Ccc------hHhHHHHHHHh
Q 029141 19 AIRVIPDFPKPGIM-------FQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIE--ARG------FIFGPPIALAI 83 (198)
Q Consensus 19 ~~~~~~~~~~~g~~-------~~d~~~~~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~--~gG------~~~A~~la~~L 83 (198)
+++.-|++=.|++. -.+++.++..++.++.+ +++...+.++-+|=|+. .-| ..=.+.+|+.|
T Consensus 34 pfKvGPDYIDP~~H~~atG~~srNLD~~mm~~~~v~~~---f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l 110 (451)
T COG1797 34 PFKVGPDYIDPGYHTAATGRPSRNLDSWMMGEEGVRAL---FARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL 110 (451)
T ss_pred ccccCCCccCchhhhHhhCCccCCCchhhcCHHHHHHH---HHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHh
Confidence 45666666555541 13556788888755443 33333333333444442 111 33456899999
Q ss_pred CCCEEEEE
Q 029141 84 GAKFVPMR 91 (198)
Q Consensus 84 ~~p~~~~r 91 (198)
++|++...
T Consensus 111 ~~PVvLVi 118 (451)
T COG1797 111 GAPVVLVV 118 (451)
T ss_pred CCCEEEEE
Confidence 99997654
No 159
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=22.90 E-value=5.1e+02 Score=25.28 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=17.7
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCe
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVH 153 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~ 153 (198)
.++.+||||||--.. ...+.+.|++.|..
T Consensus 679 ~~~~~vLivdD~~~~---~~~l~~~L~~~g~~ 707 (914)
T PRK11466 679 LDGLRLLLIEDNPLT---QRITAEMLNTSGAQ 707 (914)
T ss_pred cCCcceEEEeCCHHH---HHHHHHHHHhcCCc
Confidence 357899999995433 23344455555544
No 160
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.88 E-value=2.2e+02 Score=23.79 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEEEEecCCchHHHHhhhcCCCCeeehHHHH
Q 029141 135 ATGGTLSAAIRLLERVGVHVVECACVIELPELKVCLKVQKVIWCPNYIYIYIC 187 (198)
Q Consensus 135 tTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 187 (198)
..|.-+..+++-|++.||+.+. ++....+...+.+.+..++|+.+.+.-+
T Consensus 59 ~~~~~L~~~a~~Le~~GAd~i~---l~~NT~H~~~d~iq~~~~iPllhIidaT 108 (230)
T COG1794 59 EAGEILIDAAKKLERAGADFIV---LPTNTMHKVADDIQKAVGIPLLHIIDAT 108 (230)
T ss_pred cHHHHHHHHHHHHHhcCCCEEE---EeCCcHHHHHHHHHHhcCCCeehHHHHH
Confidence 4678899999999999999543 3333456778888888899999877644
No 161
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.85 E-value=1.6e+02 Score=24.76 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCCccEEEeeCCcc---hHhHHHHHHHhCCCEEEEEcc
Q 029141 59 DKNISVVAGIEARG---FIFGPPIALAIGAKFVPMRKP 93 (198)
Q Consensus 59 ~~~~d~Iv~v~~gG---~~~A~~la~~L~~p~~~~rk~ 93 (198)
+.++|++|+-++|| +.-=...|+.+|+|++++++.
T Consensus 195 ~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 195 EYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred HcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 45799999998854 443345678899999887653
No 162
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.74 E-value=3.3e+02 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.5
Q ss_pred cEEEeeCCcchHhHHHHHHHhCCCEEEE
Q 029141 63 SVVAGIEARGFIFGPPIALAIGAKFVPM 90 (198)
Q Consensus 63 d~Iv~v~~gG~~~A~~la~~L~~p~~~~ 90 (198)
.++||-.-||+ .|+.+|...++|.+..
T Consensus 61 ~~liGSSlGG~-~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 61 VVLIGSSLGGF-YATYLAERYGLPAVLI 87 (187)
T ss_pred eEEEEEChHHH-HHHHHHHHhCCCEEEE
Confidence 58999999995 6678999999988654
No 163
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.74 E-value=3.1e+02 Score=22.00 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHV 154 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~ 154 (198)
.+|++||| +-.|.....-++.|.+.|+.+
T Consensus 7 l~gk~vlV----vGgG~va~rk~~~Ll~~ga~V 35 (205)
T TIGR01470 7 LEGRAVLV----VGGGDVALRKARLLLKAGAQL 35 (205)
T ss_pred cCCCeEEE----ECcCHHHHHHHHHHHHCCCEE
Confidence 57889998 466888888889999999875
No 164
>PF14502 HTH_41: Helix-turn-helix domain
Probab=22.43 E-value=1.2e+02 Score=19.02 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHhcCCeE
Q 029141 136 TGGTLSAAIRLLERVGVHV 154 (198)
Q Consensus 136 TG~Tl~~a~~~L~~~Ga~~ 154 (198)
+=+|+..|.+.|++.||..
T Consensus 19 s~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIK 37 (48)
T ss_pred chhHHHHHHHHHHHCCcEE
Confidence 4478999999999999754
No 165
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=22.35 E-value=3e+02 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=23.2
Q ss_pred HHhcCCCccEEEeeCCcchHhHHHHHHHhCCCEEE
Q 029141 55 ERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (198)
Q Consensus 55 ~~l~~~~~d~Iv~v~~gG~~~A~~la~~L~~p~~~ 89 (198)
+.+.+.++|+||.-. ....+..+|+.+|+|++.
T Consensus 86 ~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~ 118 (392)
T TIGR01426 86 EAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVIS 118 (392)
T ss_pred HHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEE
Confidence 334445799987754 345678889999999864
No 166
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.07 E-value=3.5e+02 Score=21.64 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=22.2
Q ss_pred CCccEEEeeCCcch--------HhHHHHHHHhCCCEEE
Q 029141 60 KNISVVAGIEARGF--------IFGPPIALAIGAKFVP 89 (198)
Q Consensus 60 ~~~d~Iv~v~~gG~--------~~A~~la~~L~~p~~~ 89 (198)
++||+|++-...-+ ..|.++|+..|+|+..
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 47998888543222 5788999999999864
No 167
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=22.03 E-value=3.6e+02 Score=20.46 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=41.6
Q ss_pred HhHHHHHHHhCCCEEEEEcccCC-CCcee-eeeeeeccccceEEEEecccCCCCEEEEEeCcc-cchHHHHHHHHHHHhc
Q 029141 74 IFGPPIALAIGAKFVPMRKPKKL-PGEVI-SEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV-ATGGTLSAAIRLLERV 150 (198)
Q Consensus 74 ~~A~~la~~L~~p~~~~rk~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~gk~VLIVDDvv-tTG~Tl~~a~~~L~~~ 150 (198)
.++..+|..+|..|.-+.-...+ +.... ...| +...+.+++..+.+ ..+|+++|.+= ++=.|.++..+++++.
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~--~~~~~~f~~~~GPi--f~~ill~DEiNrappktQsAlLeam~Er 89 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGFPVY--DQETGEFEFRPGPI--FTNILLADEINRAPPKTQSALLEAMEER 89 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEEEEE--ETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceeeeee--ccCCCeeEeecChh--hhceeeecccccCCHHHHHHHHHHHHcC
Confidence 57888999998877433211111 11111 1111 22335566666643 35799999995 4567888889999886
Q ss_pred CCe
Q 029141 151 GVH 153 (198)
Q Consensus 151 Ga~ 153 (198)
-..
T Consensus 90 ~Vt 92 (131)
T PF07726_consen 90 QVT 92 (131)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
No 168
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=21.64 E-value=6.5e+02 Score=24.40 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEE
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 155 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v 155 (198)
..|++|+++||-- .+-....+.|.+.|..+.
T Consensus 534 ~~g~~ili~d~~~---~~~~~l~~~L~~~g~~v~ 564 (919)
T PRK11107 534 LAGKRLLYVEPNS---AAAQATLDILSETPLEVT 564 (919)
T ss_pred cCCCeEEEEeCCH---HHHHHHHHHHHHCCCEEE
Confidence 5789999999954 445667778888887654
No 169
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.45 E-value=1.7e+02 Score=24.55 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=25.7
Q ss_pred CCCccEEEeeCCcchHhHHHH--HHHhCCCEEEEEcc
Q 029141 59 DKNISVVAGIEARGFIFGPPI--ALAIGAKFVPMRKP 93 (198)
Q Consensus 59 ~~~~d~Iv~v~~gG~~~A~~l--a~~L~~p~~~~rk~ 93 (198)
+.++|++|+-++||.-....+ |+.+|+|++.+++.
T Consensus 192 ~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 228 (249)
T PF02571_consen 192 QYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRP 228 (249)
T ss_pred HcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 347899999998887443333 67889999887653
No 170
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=21.24 E-value=1.5e+02 Score=25.30 Aligned_cols=47 Identities=6% Similarity=-0.187 Sum_probs=32.2
Q ss_pred hcCHHHHHHHHHHHHHHhcCCCccEEEeeCCcch----HhHHHHHHHhCCCEEE
Q 029141 40 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGF----IFGPPIALAIGAKFVP 89 (198)
Q Consensus 40 ~~~~~~~~~i~~~La~~l~~~~~d~Iv~v~~gG~----~~A~~la~~L~~p~~~ 89 (198)
..||. ..+..+++.+.+..+.+|+|+...+. .....++..+++|++.
T Consensus 45 ~~d~~---~~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is 95 (362)
T cd06367 45 DTDPI---SLLLSVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVG 95 (362)
T ss_pred CCCHH---HHHHHHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEE
Confidence 44664 33334444444447889999988775 5667888899999975
No 171
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=21.05 E-value=2.3e+02 Score=25.29 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred eeeecH--HHhcCHHHHH------HHHHHHHHHhcCCCccEEEeeCCcchH--hHHHHHHHhCCC--EEE
Q 029141 32 MFQDIT--TLLLDTKAFR------DTIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAIGAK--FVP 89 (198)
Q Consensus 32 ~~~d~~--~~~~~~~~~~------~i~~~La~~l~~~~~d~Iv~v~~gG~~--~A~~la~~L~~p--~~~ 89 (198)
..+|.+ .+.+=.+.+. .+.+.+.+.+...+||++|.++.-||+ +|. -++..|.| +++
T Consensus 45 ~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak-~lk~~~~~~~viy 113 (373)
T PF02684_consen 45 SLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAK-KLKKRGIPIKVIY 113 (373)
T ss_pred eecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHH-HHHHhCCCceEEE
Confidence 445664 3444455444 444445555666799999999999996 343 33456766 554
No 172
>PRK04940 hypothetical protein; Provisional
Probab=20.92 E-value=4e+02 Score=21.27 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=32.9
Q ss_pred cCHHHH-HHHHHHHHHHhcCC--CccEEEeeCCcchHhHHHHHHHhCCCEEEEE
Q 029141 41 LDTKAF-RDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMR 91 (198)
Q Consensus 41 ~~~~~~-~~i~~~La~~l~~~--~~d~Iv~v~~gG~~~A~~la~~L~~p~~~~r 91 (198)
..|... ..+.+.+.+..... +...+||..-|| ..|+.+|...|+|-+.+.
T Consensus 37 ~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGG-yyA~~La~~~g~~aVLiN 89 (180)
T PRK04940 37 LHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGG-YWAERIGFLCGIRQVIFN 89 (180)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHH-HHHHHHHHHHCCCEEEEC
Confidence 455543 33444443322211 467999999999 578899999999987653
No 173
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=20.91 E-value=1.2e+02 Score=29.74 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=28.3
Q ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEE
Q 029141 121 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 157 (198)
Q Consensus 121 ~~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~ 157 (198)
...|.+||+||| +.-+-+-+...|++.|+++..+
T Consensus 663 ~l~g~~iLlvdd---n~vn~~Va~~~l~~~g~~~~~~ 696 (786)
T KOG0519|consen 663 LLTGPKILLVDD---NPVNRKVATGMLKKLGAEVTEV 696 (786)
T ss_pred cccCCceEEEec---ccchHHHHHHHHHHhCCeeEee
Confidence 468999999999 5666888999999999987543
No 174
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=20.70 E-value=2.2e+02 Score=24.26 Aligned_cols=60 Identities=13% Similarity=-0.124 Sum_probs=36.4
Q ss_pred EEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCC---chHHHHhhhcCCCCeeehHHHH
Q 029141 126 RALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE---LKVCLKVQKVIWCPNYIYIYIC 187 (198)
Q Consensus 126 ~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 187 (198)
.+...||--+...++.++++.|.+.+ +..++.-..-+. ......+.+.+++|++++..-.
T Consensus 38 ~l~~~d~~~d~~~~~~~~~~~l~~~~--v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~ 100 (362)
T cd06367 38 EAVAVSNDTDPISLLLSVCDLLVVQV--VAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRE 100 (362)
T ss_pred EEEEEecCCCHHHHHHHHHHHhcccc--eEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccc
Confidence 47777777777788888888886542 222221111111 2445666777799999875443
No 175
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.69 E-value=1.9e+02 Score=24.60 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=28.0
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecC
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 164 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~ 164 (198)
.+|++++| +-+|++.++++-.|.+.|+..+. ++++.
T Consensus 122 ~~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~---i~nRt 157 (288)
T PRK12749 122 IKGKTMVL----LGAGGASTAIGAQGAIEGLKEIK---LFNRR 157 (288)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHCCCCEEE---EEeCC
Confidence 57889987 57899999988889999987644 44564
No 176
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=20.56 E-value=2.1e+02 Score=19.49 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEE
Q 029141 123 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 156 (198)
Q Consensus 123 ~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~ 156 (198)
+++.|+++.+ +|.....+...|.+.|...+.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~ 87 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVY 87 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEE
Confidence 5788999876 587778888899999987543
No 177
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=20.55 E-value=1.9e+02 Score=24.63 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.5
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHhcCCeEEEEEEEEecCCchH
Q 029141 122 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKV 168 (198)
Q Consensus 122 ~~gk~VLIVDDvvtTG~Tl~~a~~~L~~~Ga~~v~~~~i~~~~~~~~ 168 (198)
.+|++|+| +-+|++-++++-.|.+.|++.+.+ +++...++
T Consensus 125 ~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i---~nR~~~ka 164 (283)
T PRK14027 125 AKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQV---ADLDTSRA 164 (283)
T ss_pred cCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEE---EcCCHHHH
Confidence 56889986 688999999999999999876444 46653333
Done!