BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029142
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 141/191 (73%), Gaps = 2/191 (1%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA 60
++PNIYCCGAGTAADT+ T ++SS L+LH TGR RVVTA +LK+ LF Y+GY+ A
Sbjct: 37 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGA 96
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
ALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++ + ++E LV
Sbjct: 97 ALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS 156
Query: 121 DAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKI 180
+AI +GIFNDLGSGSN+D+CVI+K ++LR + +PN + + T VL KI
Sbjct: 157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKI 216
Query: 181 TPLRERVEVVE 191
TPL +EV+E
Sbjct: 217 TPL--EIEVLE 225
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 141/191 (73%), Gaps = 2/191 (1%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA 60
++PNIYCCGAGTAADT+ T ++SS L+LH TGR RVVTA +LK+ LF YQGY+ A
Sbjct: 37 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGA 96
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
ALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++ + ++E +LV
Sbjct: 97 ALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVS 156
Query: 121 DAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKI 180
+AI +GIFNDLGSGSN+D+CVI+K ++LR +PN + + T VL K+
Sbjct: 157 EAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKV 216
Query: 181 TPLRERVEVVE 191
TPL +EV+E
Sbjct: 217 TPL--EIEVLE 225
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 132/178 (74%), Gaps = 2/178 (1%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA 60
++P I+C GAGTAADTEAVT ++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A
Sbjct: 66 ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGA 125
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
L++ GVD TG HL +I+ HGSTD + ++GSGSLAAMA+ ES +K+ LTK+E I+L
Sbjct: 126 YLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 185
Query: 121 DAICSGIFNDLGSGSNVDVCVITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 177
DAI +GI+NDLGSGSNVDVCV+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 186 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 242
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 132/178 (74%), Gaps = 2/178 (1%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA 60
++P I+C GAGTAADTEAVT ++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A
Sbjct: 37 ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGA 96
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
L++ GVD TG HL +I+ HGSTD + ++GSGSLAAMA+ ES +K+ LTK+E I+L
Sbjct: 97 YLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 156
Query: 121 DAICSGIFNDLGSGSNVDVCVITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 177
DAI +GI+NDLGSGSNVDVCV+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 213
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 206 bits (524), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 132/178 (74%), Gaps = 2/178 (1%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA 60
++P I+C GAGTAADTEAVT ++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A
Sbjct: 37 ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGA 96
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
L++ GVD TG HL +I+ HGSTD + ++GSGSLAAMA+ ES +K+ LTK+E I+L
Sbjct: 97 YLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 156
Query: 121 DAICSGIFNDLGSGSNVDVCVITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 177
DAI +GI+NDLGSGSNVDVCV+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 213
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA 60
+AP IYCCGAG AADTE T M +S+++LH TGRE RV T +L++ LF YQG+V A
Sbjct: 37 IAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGA 96
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
+LV+GGVD GP L+ ++PHGS LPF +GSG AA+A+ E +++ +T + +L+V
Sbjct: 97 SLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLV 156
Query: 121 DAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKG-YSF-PKKTEVLLT 178
+AI +GI +DLGSG NVD CVIT G + R L P V G Y F P T VL
Sbjct: 157 EAITAGILSDLGSGGNVDACVITAGGAKLQRA--LSTPTEPVQRAGRYRFAPGTTPVLTR 214
Query: 179 KITPL 183
++ PL
Sbjct: 215 EVRPL 219
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALV 63
+I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A ++
Sbjct: 40 HIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGII 99
Query: 64 LGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 122
+ G D G ++++ G FA GSGS ++ Y+EG+TKDE +Q +A
Sbjct: 100 IAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANA 159
Query: 123 ICSGIFNDLGSGSNVDVCVITKGHKE 148
+ + D SG + + I + E
Sbjct: 160 LALAMERDGSSGGVIRLAAIQESGVE 185
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALV 63
I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A ++
Sbjct: 40 RIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGII 99
Query: 64 LGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 122
+ G D G ++++ G FA GSGS ++ Y+EG+TK+E +Q +A
Sbjct: 100 IAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159
Query: 123 ICSGIFNDLGSGSNVDVCVITKGHKE 148
+ + D SG + + I + E
Sbjct: 160 LALAMERDGSSGGVIRLAAIAESGVE 185
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGV 67
AG D + + + ++L+L+R R + + A+ L ++ N Y+ L++GG+
Sbjct: 46 AGLVGDAQVLVRYMKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGI 104
Query: 68 DCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 127
D T PH+ +I G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI +
Sbjct: 105 D-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK 163
Query: 128 FNDLGSGSNVDVCVITK 144
D SG +DV VIT+
Sbjct: 164 QRDSASGGMIDVAVITR 180
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGV 67
AG D + + + ++L+L+R R + + A+ L ++ N Y+ L++GG+
Sbjct: 54 AGLVGDAQVLVRYMKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGI 112
Query: 68 DCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 127
D T PH+ +I G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI +
Sbjct: 113 D-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK 171
Query: 128 FNDLGSGSNVDVCVITK 144
D SG +DV VIT+
Sbjct: 172 QRDSASGGMIDVAVITR 188
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGV 67
AG D + + + ++L+L+R R + + A+ L ++ N Y+ L++GG+
Sbjct: 54 AGLVGDAQVLVRYMKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGI 112
Query: 68 DCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 127
D T PH+ +I G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI +
Sbjct: 113 D-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK 171
Query: 128 FNDLGSGSNVDVCVITK 144
D SG +DV VIT+
Sbjct: 172 QRDSASGGMIDVAVITR 188
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 5 IYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVL 64
I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++
Sbjct: 60 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIV 118
Query: 65 GGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 123
G D ++TI GS LP+A GSGS + ++E ++K+E + + ++
Sbjct: 119 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 178
Query: 124 CSGIFNDLGSGSNVDVCVITKGHKEYL 150
I D SG + + V+T E L
Sbjct: 179 SQAIKWDGSSGGVIRMVVLTAAGVERL 205
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 5 IYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVL 64
I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++
Sbjct: 41 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIV 99
Query: 65 GGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 123
G D ++TI GS LP+A GSGS + ++E ++K+E + + ++
Sbjct: 100 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 159
Query: 124 CSGIFNDLGSGSNVDVCVITKGHKEYL 150
I D SG + + V+T E L
Sbjct: 160 SQAIKWDGSSGGVIRMVVLTAAGVERL 186
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 5 IYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVL 64
I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++
Sbjct: 41 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIV 99
Query: 65 GGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 123
G D ++TI GS LP+A GSGS + ++E ++K+E + + ++
Sbjct: 100 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 159
Query: 124 CSGIFNDLGSGSNVDVCVITKGHKEYL 150
I D SG + + V+T E L
Sbjct: 160 SQAIKWDGSSGGVIRMVVLTAAGVERL 186
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALV 63
I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A ++
Sbjct: 49 KIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGII 107
Query: 64 LGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 122
+ G D ++TI GS LP+A GSGS + ++E ++K+E + + +
Sbjct: 108 VAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHS 167
Query: 123 ICSGIFNDLGSGSNVDVCVITKGHKEYL 150
+ I D SG + + V+T E L
Sbjct: 168 LSQAIKWDGSSGGVIRMVVLTAAGVERL 195
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 6/148 (4%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR-VVTALTLLKKHLFNYQGYVQ 59
+A + AG+ D + + ++ +++ + Y RE + V A+ L +L N Y
Sbjct: 37 IADRMAMTTAGSVGDAQFLARII--KIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFP 94
Query: 60 --AALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGI 116
L++GG+D G +++I P G+ + GSGSL A + E ++ + DE +
Sbjct: 95 YLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154
Query: 117 QLVVDAICSGIFNDLGSGSNVDVCVITK 144
+L V AI S + D SG +DV IT+
Sbjct: 155 ELAVRAIYSAMKRDSASGDGIDVVKITE 182
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD 68
AG+ D +A+ ++ ++ +L++ TGR + TLL L + + + +++GG D
Sbjct: 47 AGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYD 106
Query: 69 C-TGPHLHTIYPHGS-TDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSG 126
G L ++ P G + F GSGS A + E+ Y ++ +EGI+L ++A+ S
Sbjct: 107 LLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSA 166
Query: 127 IFNDLGSGSNVDVCVITK 144
+ D SG+ + + VITK
Sbjct: 167 MERDTFSGNGISLAVITK 184
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ---- 59
++ +G AD + D + Q++R G E ++ L KK Q Y Q
Sbjct: 77 HVAAATSGLVADARVLIDRARLEAQIYRLTYGEE---ISIEMLAKKICDIKQAYTQHGGV 133
Query: 60 ----AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEG 115
+L++ G+D L P G+ +GSG M + E +Y++ +T DEG
Sbjct: 134 RPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEG 193
Query: 116 IQLVVDAICSGIFNDLGSGSNVDVCVIT 143
++L + A+ N+ NVDVC+IT
Sbjct: 194 LELAITALTKA--NEDIKPENVDVCIIT 219
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AA 61
+G AD + D Q + G +V L+K+ Q Y Q +
Sbjct: 73 SGLVADARVLVDFARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVS 129
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121
L+ G+D GP L P G+ + +GSG A ++ E +YKE L + E + L +
Sbjct: 130 LIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIK 189
Query: 122 AICSGI 127
A+ S +
Sbjct: 190 ALKSSL 195
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AA 61
+G AD + D Q + G +V L+K+ Q Y Q +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVS 135
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121
L+ G+D GP L P G+ + +GSG A ++ E +YKE L + E + L +
Sbjct: 136 LIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIK 195
Query: 122 AICSGI 127
A+ S +
Sbjct: 196 ALKSSL 201
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AA 61
+G AD + D Q + G +V L+K+ Q Y Q +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVS 135
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121
L+ G+D GP L P G+ + +GSG A ++ E +YKE L + E + L +
Sbjct: 136 LIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIK 195
Query: 122 AICSGI 127
A+ S +
Sbjct: 196 ALKSSL 201
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AA 61
+G AD + D Q + G +V L+K+ Q Y Q +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVS 135
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121
L+ G+D GP L P G+ + +GSG A ++ E +YKE L + E + L +
Sbjct: 136 LIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIK 195
Query: 122 AICSGI 127
A+ S +
Sbjct: 196 ALKSSL 201
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AA 61
+G AD + D Q + G +V L+K+ Q Y Q +
Sbjct: 83 SGLVADARVLVDFARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVS 139
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121
L+ G+D GP L P G+ + +GSG A ++ E +YKE L + E + L +
Sbjct: 140 LIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIK 199
Query: 122 AICSGI 127
A+ S +
Sbjct: 200 ALKSSL 205
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AA 61
+G AD + D Q + G +V L+K+ Q Y Q +
Sbjct: 83 SGLVADARVLVDFARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVS 139
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121
L+ G+D GP L P G+ + +GSG A ++ E +YKE L + E + L +
Sbjct: 140 LIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIK 199
Query: 122 AICSGI 127
A+ S +
Sbjct: 200 ALKSSL 205
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALV 63
I+C +G+AAD +A+ DM + QL+LH V+ A ++K + Y+ + A L+
Sbjct: 40 RIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLI 99
Query: 64 LGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 122
+ G D G ++ G PF GSGS ++ YK G+T +E + +A
Sbjct: 100 VAGWDQREGGQVYGTM-GGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNA 158
Query: 123 ICSGIFNDLGSGSNVDVCVITKG---HKEYLRNHL 154
I + D SG + + IT H+ L + L
Sbjct: 159 ITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDEL 193
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC 69
AG AAD + + SQ +LH V A +L ++ Y+G A L +G + C
Sbjct: 121 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMIC 177
Query: 70 -----TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAIC 124
GP ++ + G+ +GSG A + +S YK L+ ++ + L +I
Sbjct: 178 GYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 237
Query: 125 SGIFNDLGSGSNVDVCVITKGHKEYLRNH 153
+ D SG +V++ +T+ Y NH
Sbjct: 238 AAAHRDAYSGGSVNLYHVTEDGWIYHGNH 266
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC 69
AG AAD + + SQ +LH V A +L ++ Y+G A L +G + C
Sbjct: 121 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMIC 177
Query: 70 -----TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAIC 124
GP ++ + G+ +GSG A + +S YK L+ ++ + L +I
Sbjct: 178 GYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 237
Query: 125 SGIFNDLGSGSNVDVCVITKGHKEYLRNH 153
+ D SG +V++ +T+ Y NH
Sbjct: 238 AAAHRDAYSGGSVNLYHVTEDGWIYHGNH 266
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC 69
AG AAD + + SQ +LH V A +L ++ Y+G A L +G + C
Sbjct: 46 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMIC 102
Query: 70 -----TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAIC 124
GP ++ + G+ +GSG A + +S YK L+ ++ + L +I
Sbjct: 103 GYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 162
Query: 125 SGIFNDLGSGSNVDVCVITKGHKEYLRNH 153
+ D SG +V++ +T+ Y NH
Sbjct: 163 AAAHRDAYSGGSVNLYHVTEDGWIYHGNH 191
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC 69
AG AAD + + SQ +LH V A +L ++ Y+G A L +G + C
Sbjct: 46 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMIC 102
Query: 70 -----TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAIC 124
GP ++ + G+ +GSG A + +S YK L+ ++ + L +I
Sbjct: 103 GYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 162
Query: 125 SGIFNDLGSGSNVDVCVITKGHKEYLRNH 153
+ D SG +V++ +T+ Y NH
Sbjct: 163 AAAHRDAYSGGSVNLYHVTEDGWIYHGNH 191
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD 68
+G AAD + +++ + +L+ G V A LL + Y+G + ++ G D
Sbjct: 46 SGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWD 105
Query: 69 CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 128
GP L+ + +G+ + + GSG+ A + +S Y++ L+ +E L AI
Sbjct: 106 KKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATH 165
Query: 129 NDLGSGSNVDV 139
D SG V++
Sbjct: 166 RDNYSGGVVNM 176
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 4 NIYCCG--AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQA 60
N Y G AG AAD +++ Q +++ V A LL ++ Y+G +
Sbjct: 38 NPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSM 97
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
++ G D GP L+ + G+ + ++GSGS+ A + + Y L +E L
Sbjct: 98 GTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLAR 157
Query: 121 DAICSGIFNDLGSGSNVDV 139
AI + D SG V++
Sbjct: 158 RAIYQATYRDAYSGGAVNL 176
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 4 NIYCCG--AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQA 60
N Y G AG AAD +++ Q +++ V A LL ++ Y+G +
Sbjct: 38 NPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSM 97
Query: 61 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 120
++ G D GP L+ + G+ + ++GSGS+ A + + Y L ++ L
Sbjct: 98 GTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR 157
Query: 121 DAICSGIFNDLGSGSNVDV 139
AI + D SG V++
Sbjct: 158 RAIYQATYRDAYSGGAVNL 176
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA--- 60
+I C +G AD + + D + Q H + T E+ V ++T +L G A
Sbjct: 73 HIGCAMSGLIADAKTLIDKARVETQNH-WFTYNETMTVESVTQAVSNLALQFGEEDADPG 131
Query: 61 --------ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTK 112
AL+ GGVD GP L + P G+ +GS S A + + Y + +T
Sbjct: 132 AMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTL 191
Query: 113 DEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146
E I+ + I + + + +N+++ + G
Sbjct: 192 KEAIKSSL-IILKQVMEEKLNATNIELATVQPGQ 224
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Query: 4 NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQA--- 60
+I C +G AD + + D + Q H + T E+ V ++T +L G A
Sbjct: 73 HIGCAMSGLIADAKTLIDKARVETQNH-WFTYNETMTVESVTQAVSNLALQFGEEDADPG 131
Query: 61 --------ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTK 112
AL+ GGVD GP L + P G+ +GS S A + + Y + +T
Sbjct: 132 AMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTL 191
Query: 113 DEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146
E I+ + I + + + +N+++ + G
Sbjct: 192 KEAIKSSL-IILKQVMEEKLNATNIELATVQPGQ 224
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE--SRVVTALTL--LKKHLFNYQG 56
++P+ AG A DT + + + +QL+ E + V++ L K + + +
Sbjct: 38 LSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRP 97
Query: 57 YVQAALVLGGVDC--TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDE 114
Y Q +++GG D P L+ I G+ LP+ G ++ + Y+ +T +E
Sbjct: 98 Y-QVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE 156
Query: 115 GIQLV 119
G+ L+
Sbjct: 157 GLDLL 161
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALT------LLKKHLFNYQGYVQAALV 63
+G D +T ++ ++L++++ H+ ++ A+ L + F Y Y +
Sbjct: 55 SGFHGDCLTLTKIIEARLKMYK-HSNNKAMTTGAIAAMLSTILYSRRFFPYYVYN----I 109
Query: 64 LGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK--YKE-------GLTKD 113
+GG+D G +++ P GS F GS S + +++ +K LT D
Sbjct: 110 IGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLD 169
Query: 114 EGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLP 156
++LV D S D+ +G + +C++T KE +R +P
Sbjct: 170 RAMRLVKDVFISAAERDVYTGDALRICIVT---KEGIREETVP 209
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 6 YCCGA--GTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ---- 59
+ C A G AD + D + Q++R +T L KK Q Y Q
Sbjct: 64 HICAATSGLVADARVLIDRARIEAQINRLTY---DEPITVKELAKKICDFKQQYTQYGGV 120
Query: 60 ----AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEG 115
+L++ GVD P L+ P G+ +G G A FE +Y++ L+ D+
Sbjct: 121 RPFGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDA 179
Query: 116 IQLVVDAICSGIFNDL 131
+ L + A+ I ++L
Sbjct: 180 MVLGLVAMGLSIESEL 195
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 6 YCCGA--GTAADTEAVTDMVSSQLQLHR--YHTGRESRVVTALTLLKKHLFNYQGYVQ-- 59
+ C A G AD + D + Q++R Y +T L KK Q Y Q
Sbjct: 73 HICAATSGLVADARVLIDRARIEAQINRLTYDIP-----ITVKELAKKICDFKQQYTQYG 127
Query: 60 ------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKD 113
+L++ GV+ P L+ P G+ +G G +A FE +Y++ L+ D
Sbjct: 128 GVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFD 186
Query: 114 EGIQLVVDAICSGIFNDL 131
+ + L + A+ I ++L
Sbjct: 187 DAMVLGLVAMGLSIESEL 204
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALT------LLKKHLFNYQGYVQAALV 63
+G D +T ++ ++L++++ H+ ++ A+ L + F Y Y +
Sbjct: 55 SGFHGDCLTLTKIIEARLKMYK-HSNNKAMTTGAIAAMLSTILYSRRFFPYYVYN----I 109
Query: 64 LGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK--YKE-------GLTKD 113
+GG+D G +++ P GS F GS S + +++ +K L+ D
Sbjct: 110 IGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLD 169
Query: 114 EGIQLVVDAICSGIFNDLGSGSNVDVCVITK 144
++LV D S D+ +G + +C++TK
Sbjct: 170 RAMRLVKDVFISAAERDVYTGDALRICIVTK 200
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 63 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 119
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 131 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 190
Query: 120 VDAI 123
I
Sbjct: 191 AKII 194
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 63 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 119
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 133 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 192
Query: 120 VDAI 123
I
Sbjct: 193 AKII 196
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 63 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 119
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 136 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 195
Query: 120 VDAI 123
I
Sbjct: 196 AKII 199
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 63 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFES---KYKEGLTKDEGIQLV 119
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 137 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 196
Query: 120 VDAI 123
I
Sbjct: 197 AKII 200
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 63 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 119
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 137 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 196
Query: 120 VDAI 123
I
Sbjct: 197 AKII 200
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES-----RVVTALTLLKKHLFNYQ 55
+ ++ C AG +D +T+ + +L RY + ++VTAL +K+ +
Sbjct: 68 LNEDMACSVAGITSDANVLTNEL--RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG 125
Query: 56 G---YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEG-LT 111
G + + L +G G L+ P G+ +G+ S AA++M + YKEG +T
Sbjct: 126 GKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMT 185
Query: 112 KDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 144
+ L V + + S V++ +T+
Sbjct: 186 LKSALALAVKVLNKTMDVSKLSAEKVEIATLTR 218
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES-----RVVTALTLLKKHLFNYQ 55
+ ++ C AG +D +T+ + +L RY + ++VTAL +K+ +
Sbjct: 68 LNEDMACSVAGITSDANVLTNEL--RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG 125
Query: 56 G---YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEG-LT 111
G + + L +G G L+ P G+ +G+ S AA++M + YKEG +T
Sbjct: 126 GKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMT 185
Query: 112 KDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 144
+ L + + + S V++ +T+
Sbjct: 186 LKSALALAIKVLNKTMDVSKLSAEKVEIATLTR 218
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 11 GTAADTEAVTDMVSSQLQLHRYHTGRE--SRVVTALT----LLKKHLFNYQGYVQAALVL 64
GT+AD+EA+ D + LH G S +VT ++ H F + +QA
Sbjct: 587 GTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQA---- 642
Query: 65 GGVDCTGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE 108
D GPH + T HG+ + S + A ++E Y+E
Sbjct: 643 ---DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRE 688
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 11 GTAADTEAVTDMVSSQLQLHRYHTGRE--SRVVTALT----LLKKHLFNYQGYVQAALVL 64
GT+AD+EA+ D + LH G S +VT ++ H F + +QA
Sbjct: 587 GTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHNDRVVPAHSFKFAATLQA---- 642
Query: 65 GGVDCTGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE 108
D GPH + T HG+ + S + A ++E Y+E
Sbjct: 643 ---DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRE 688
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 30/115 (26%)
Query: 11 GTAADTEAVTDMVSSQLQLHRYHTG------------RESRVVTALTLLKKHLFNYQGYV 58
GT+AD+EA D + LH G + RVV A H F + +
Sbjct: 587 GTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPA------HSFKFAATL 640
Query: 59 QAALVLGGVDCTGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE 108
QA D GPH + T HG+ + S + A ++E Y+E
Sbjct: 641 QA-------DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEXGYRE 688
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 30/115 (26%)
Query: 11 GTAADTEAVTDMVSSQLQLHRYHTG------------RESRVVTALTLLKKHLFNYQGYV 58
GT+AD+EA D + LH G + RVV A H F + +
Sbjct: 587 GTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPA------HSFKFAATL 640
Query: 59 QAALVLGGVDCTGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE 108
QA D GPH + T HG+ + S + A ++E Y+E
Sbjct: 641 QA-------DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEXGYRE 688
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 55 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 105
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 119 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 178
Query: 106 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 145
YK+ + D+ I+L + + + + ++ I KG
Sbjct: 179 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKG 218
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 55 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 105
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 120 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 179
Query: 106 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 145
YK+ + D+ I+L + + + + ++ I KG
Sbjct: 180 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKG 219
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQ---L 118
L+ G + G L+ + P GS +G GS+AA E ++ + L ++ I L
Sbjct: 116 LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALL 175
Query: 119 VVDAICSGIFNDLGSGSNVDVCVI 142
+ G FN G +++ +I
Sbjct: 176 TLKESVEGEFN----GDTIELAII 195
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 55 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 105
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 120 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 179
Query: 106 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 180 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 222
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQ---L 118
L+ G + G L+ + P GS +G GS+AA E ++ + L ++ I L
Sbjct: 135 LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALL 194
Query: 119 VVDAICSGIFNDLGSGSNVDVCVI 142
+ G FN G +++ +I
Sbjct: 195 TLKESVEGEFN----GDTIELAII 214
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 55 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 105
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 107 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 166
Query: 106 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 167 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 209
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 55 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 105
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 110 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 169
Query: 106 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 170 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 212
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL---FNYQGY 57
M+ I G A DT + + +QL++ G E A +++L +
Sbjct: 38 MSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTP 97
Query: 58 VQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGI 116
L+L G D GP L+ + + PFA G G+ +++ + Y ++++ +
Sbjct: 98 YHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157
Query: 117 QLV 119
+L+
Sbjct: 158 ELL 160
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL---FNYQGY 57
M+ I G A DT + + +QL++ G E A +++L +
Sbjct: 38 MSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTP 97
Query: 58 VQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGI 116
L+L G D GP L+ + + PFA G G+ +++ + Y ++++ +
Sbjct: 98 YHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157
Query: 117 QLV 119
+L+
Sbjct: 158 ELL 160
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLL-KKHLFNYQGY----VQAALVL 64
AG A D +++ + Q R+ V A LL K N Q Y L++
Sbjct: 74 AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLI 133
Query: 65 GGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQLVV 120
G D +G HL P G+ L +G+ S A E + DE I+ V
Sbjct: 134 IGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGV 193
Query: 121 DAICSGIFNDLGSGSNVDVCVITK 144
+AI + ++ + N+ + ++ K
Sbjct: 194 EAISQSLRDESLTVDNLSIAIVGK 217
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLL-KKHLFNYQGY----VQAALVL 64
AG A D +++ + Q R+ V A LL K N Q Y L++
Sbjct: 75 AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLI 134
Query: 65 GGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQLVV 120
G D +G HL P G+ L +G+ S A E + DE I+ V
Sbjct: 135 IGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGV 194
Query: 121 DAICSGIFNDLGSGSNVDVCVITK 144
+AI + ++ + N+ + ++ K
Sbjct: 195 EAISQSLRDESLTVDNLSIAIVGK 218
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 10 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLL-KKHLFNYQGY----VQAALVL 64
AG A D +++ + Q R+ V A LL K N Q Y L++
Sbjct: 76 AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLI 135
Query: 65 GGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQLVV 120
G D +G HL P G+ L +G+ S A E + DE I+ V
Sbjct: 136 IGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGV 195
Query: 121 DAICSGIFNDLGSGSNVDVCVITK 144
+AI + ++ + N+ + ++ K
Sbjct: 196 EAISQSLRDESLTVDNLSIAIVGK 219
>pdb|3CJI|C Chain C, Structure Of Seneca Valley Virus-001
Length = 284
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 57 YVQAALVLGGVDCTGPHLHTIYPH------------------GSTDTLPFATMGSGSLAA 98
Y + G + P+ T++PH G T T T S +L
Sbjct: 181 YYRPPNWTWGPNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLV 240
Query: 99 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDL 131
M + YKEG T D I V S FN L
Sbjct: 241 MVLVPLDYKEGATTDPEITFSVRP-TSPYFNGL 272
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 91 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 141
M G L A+ E + +G++K+E I ++ A+ S + G+ NV+V +
Sbjct: 1 MNIGLLEALDQLEEE--KGISKEEVIPILEKALVSAYRKNFGNSKNVEVVI 49
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 94 GSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 141
G L A+ E + +G++K+E I ++ A+ S + G+ NV+V +
Sbjct: 29 GLLEALDQLEEE--KGISKEEVIPILEKALVSAYRKNFGNSKNVEVVI 74
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 117
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 131 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 190
Query: 118 LVVDAICSGIFNDLGSGSNVDVCVITK 144
V+AI + ++ + N+ + ++ K
Sbjct: 191 AGVEAISQSLRDESLTVDNLSIAIVGK 217
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 62 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 117
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 132 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 191
Query: 118 LVVDAICSGIFNDLGSGSNVDVCVITK 144
V+AI + ++ + N+ + ++ K
Sbjct: 192 AGVEAISQSLRDESLTVDNLSIAIVGK 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,973,373
Number of Sequences: 62578
Number of extensions: 230750
Number of successful extensions: 562
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 78
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)