Query 029142
Match_columns 198
No_of_seqs 173 out of 1238
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0173 20S proteasome, regula 100.0 7.6E-49 1.6E-53 314.2 17.9 185 1-186 74-259 (271)
2 cd03761 proteasome_beta_type_5 100.0 1.1E-38 2.4E-43 254.1 20.7 150 1-150 37-187 (188)
3 cd03763 proteasome_beta_type_7 100.0 1.5E-38 3.2E-43 253.5 20.8 153 1-153 37-189 (189)
4 cd03758 proteasome_beta_type_2 100.0 1E-37 2.3E-42 249.5 20.1 150 1-150 38-191 (193)
5 cd03759 proteasome_beta_type_3 100.0 3.3E-37 7E-42 246.9 19.6 150 1-150 40-192 (195)
6 cd03762 proteasome_beta_type_6 100.0 7.2E-37 1.6E-41 243.4 20.6 149 1-149 37-186 (188)
7 COG0638 PRE1 20S proteasome, a 100.0 5E-37 1.1E-41 252.5 19.2 156 1-156 67-226 (236)
8 cd03765 proteasome_beta_bacter 100.0 8.1E-37 1.8E-41 250.7 20.0 153 3-156 42-211 (236)
9 cd03760 proteasome_beta_type_4 100.0 9.5E-37 2.1E-41 244.6 19.8 152 1-152 39-197 (197)
10 cd03764 proteasome_beta_archea 100.0 1.7E-36 3.6E-41 241.3 20.8 150 1-150 37-187 (188)
11 TIGR03634 arc_protsome_B prote 100.0 1.7E-36 3.7E-41 240.5 20.1 147 1-147 38-185 (185)
12 cd03757 proteasome_beta_type_1 100.0 1.7E-36 3.6E-41 245.8 19.9 150 1-150 45-205 (212)
13 PTZ00488 Proteasome subunit be 100.0 1.7E-36 3.6E-41 250.8 19.6 155 1-155 76-231 (247)
14 cd03750 proteasome_alpha_type_ 100.0 5.8E-36 1.2E-40 245.0 18.7 154 1-155 63-222 (227)
15 cd01912 proteasome_beta protea 100.0 3.6E-35 7.8E-40 233.4 20.4 150 1-150 37-188 (189)
16 TIGR03633 arc_protsome_A prote 100.0 1.7E-34 3.6E-39 235.8 19.8 146 1-147 65-215 (224)
17 TIGR03690 20S_bact_beta protea 100.0 1.2E-34 2.7E-39 235.9 18.9 155 1-155 39-207 (219)
18 cd03749 proteasome_alpha_type_ 100.0 1.4E-34 3E-39 234.4 18.4 143 1-143 61-211 (211)
19 PRK03996 proteasome subunit al 100.0 4.7E-34 1E-38 235.5 18.7 150 1-151 72-228 (241)
20 cd03751 proteasome_alpha_type_ 100.0 5.1E-34 1.1E-38 231.3 18.0 142 1-142 66-212 (212)
21 cd03752 proteasome_alpha_type_ 100.0 9.8E-34 2.1E-38 229.7 18.4 142 1-142 66-213 (213)
22 PTZ00246 proteasome subunit al 100.0 1.1E-33 2.5E-38 234.9 19.2 146 1-146 68-219 (253)
23 cd03756 proteasome_alpha_arche 100.0 1.8E-33 3.8E-38 227.8 18.7 142 1-143 64-210 (211)
24 cd03755 proteasome_alpha_type_ 100.0 1.4E-33 3.1E-38 227.8 17.7 139 1-142 63-207 (207)
25 cd03753 proteasome_alpha_type_ 100.0 2.2E-33 4.8E-38 227.6 18.1 141 1-142 63-213 (213)
26 KOG0176 20S proteasome, regula 100.0 1.3E-33 2.9E-38 219.6 14.7 153 1-154 70-233 (241)
27 TIGR03691 20S_bact_alpha prote 100.0 1.4E-32 3E-37 225.0 18.7 152 1-152 56-221 (228)
28 cd01906 proteasome_protease_Hs 100.0 1.8E-32 3.9E-37 216.1 18.7 142 1-142 37-182 (182)
29 cd03754 proteasome_alpha_type_ 100.0 1E-32 2.2E-37 224.1 17.4 141 1-142 65-215 (215)
30 cd01911 proteasome_alpha prote 100.0 1.1E-32 2.5E-37 222.7 17.6 141 1-142 63-209 (209)
31 PF00227 Proteasome: Proteasom 100.0 1.7E-31 3.7E-36 211.9 17.6 142 1-142 42-190 (190)
32 KOG0174 20S proteasome, regula 100.0 1.9E-31 4.1E-36 207.0 14.1 150 1-150 56-206 (224)
33 KOG0177 20S proteasome, regula 100.0 5.9E-31 1.3E-35 203.4 13.6 155 1-155 38-196 (200)
34 KOG0181 20S proteasome, regula 100.0 3.6E-31 7.8E-36 205.6 11.6 154 1-155 68-226 (233)
35 KOG0183 20S proteasome, regula 100.0 1.9E-30 4.1E-35 204.2 11.9 150 1-153 66-224 (249)
36 KOG0175 20S proteasome, regula 100.0 7.8E-30 1.7E-34 205.3 11.6 155 1-155 108-263 (285)
37 KOG0179 20S proteasome, regula 100.0 2.2E-28 4.7E-33 191.9 15.6 150 1-150 66-228 (235)
38 KOG0178 20S proteasome, regula 100.0 3E-28 6.5E-33 191.4 15.3 149 1-149 68-223 (249)
39 KOG0863 20S proteasome, regula 100.0 9E-28 2E-32 190.8 14.9 146 1-146 66-219 (264)
40 KOG0185 20S proteasome, regula 99.9 8.1E-27 1.8E-31 185.8 13.0 162 1-162 78-247 (256)
41 KOG0180 20S proteasome, regula 99.9 4.2E-26 9.1E-31 174.3 14.9 148 1-148 45-195 (204)
42 KOG0182 20S proteasome, regula 99.9 4.3E-26 9.3E-31 179.3 15.4 146 1-147 72-225 (246)
43 PRK05456 ATP-dependent proteas 99.9 2.3E-24 5E-29 169.2 15.9 129 1-141 39-171 (172)
44 cd01913 protease_HslV Protease 99.9 3.3E-24 7.1E-29 167.6 15.7 129 1-141 37-170 (171)
45 KOG0184 20S proteasome, regula 99.9 3.3E-24 7.2E-29 169.8 12.8 144 1-144 70-218 (254)
46 TIGR03692 ATP_dep_HslV ATP-dep 99.9 1.7E-23 3.6E-28 163.6 15.8 128 2-141 39-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 99.9 1.5E-22 3.2E-27 154.7 16.4 124 1-124 37-163 (164)
48 COG3484 Predicted proteasome-t 98.7 2.8E-07 6E-12 73.1 11.6 151 5-156 45-212 (255)
49 COG5405 HslV ATP-dependent pro 98.5 1.6E-06 3.5E-11 66.5 11.2 130 2-143 43-176 (178)
50 PF12465 Pr_beta_C: Proteasome 97.8 1E-05 2.2E-10 47.6 1.9 32 156-189 1-34 (38)
51 KOG3361 Iron binding protein i 94.4 0.14 3.1E-06 38.3 5.8 43 75-117 71-113 (157)
52 PF09894 DUF2121: Uncharacteri 91.0 1.1 2.3E-05 35.8 6.8 50 96-145 131-180 (194)
53 COG4079 Uncharacterized protei 69.7 19 0.00041 30.0 6.3 50 96-145 132-181 (293)
54 COG4245 TerY Uncharacterized p 62.0 15 0.00033 29.4 4.3 53 114-174 22-76 (207)
55 PF03928 DUF336: Domain of unk 62.0 15 0.00033 27.1 4.2 39 108-150 1-39 (132)
56 PRK09732 hypothetical protein; 59.3 27 0.0006 26.2 5.2 37 108-148 5-41 (134)
57 COG3193 GlcG Uncharacterized p 52.5 42 0.0009 25.5 5.1 37 107-147 5-41 (141)
58 PF07499 RuvA_C: RuvA, C-termi 51.9 12 0.00025 22.7 1.7 32 90-121 12-44 (47)
59 cd04513 Glycosylasparaginase G 45.4 1.1E+02 0.0023 25.9 7.0 58 88-148 187-248 (263)
60 KOG2599 Pyridoxal/pyridoxine/p 41.1 2.3E+02 0.005 24.2 11.1 92 32-129 157-263 (308)
61 PF08269 Cache_2: Cache domain 40.9 53 0.0012 22.4 4.0 51 98-153 19-73 (95)
62 PRK02260 S-ribosylhomocysteina 40.8 1.3E+02 0.0028 23.4 6.3 60 71-130 71-151 (158)
63 cd04512 Ntn_Asparaginase_2_lik 39.1 1.6E+02 0.0034 24.6 7.0 56 87-148 175-234 (248)
64 cd04702 ASRGL1_like ASRGL1_lik 38.7 1.4E+02 0.0031 25.0 6.8 56 87-148 178-237 (261)
65 COG3140 Uncharacterized protei 38.5 83 0.0018 20.0 4.0 35 97-131 15-49 (60)
66 PF11211 DUF2997: Protein of u 38.1 47 0.001 20.3 2.9 31 75-105 3-33 (48)
67 COG0822 IscU NifU homolog invo 35.6 1.3E+02 0.0028 22.9 5.7 53 73-126 44-99 (150)
68 PF00538 Linker_histone: linke 35.5 77 0.0017 21.0 4.0 40 91-130 20-59 (77)
69 PF01592 NifU_N: NifU-like N t 35.2 1.2E+02 0.0026 22.1 5.3 54 75-128 42-96 (126)
70 PF12385 Peptidase_C70: Papain 34.9 1.2E+02 0.0027 23.6 5.3 41 43-83 97-148 (166)
71 PRK02487 hypothetical protein; 33.9 1.2E+02 0.0025 23.3 5.3 37 106-147 19-55 (163)
72 PF14748 P5CR_dimer: Pyrroline 31.1 81 0.0018 22.4 3.7 37 91-127 13-53 (107)
73 COG4537 ComGC Competence prote 31.1 98 0.0021 22.2 3.9 29 17-45 50-79 (107)
74 PRK11325 scaffold protein; Pro 30.7 1.5E+02 0.0032 21.8 5.1 50 76-125 46-95 (127)
75 PF11773 PulG: Type II secreto 30.4 80 0.0017 21.7 3.3 36 109-146 33-68 (82)
76 COG1754 Uncharacterized C-term 30.0 25 0.00055 29.9 1.0 71 65-140 78-152 (298)
77 PRK12413 phosphomethylpyrimidi 27.3 1.1E+02 0.0023 24.8 4.2 40 89-129 203-242 (253)
78 PF04485 NblA: Phycobilisome d 26.9 88 0.0019 19.6 2.8 23 108-130 20-42 (53)
79 COG3710 CadC DNA-binding winge 26.9 2.2E+02 0.0048 21.5 5.7 65 87-157 28-110 (148)
80 smart00195 DSPc Dual specifici 24.9 90 0.002 22.5 3.1 35 88-122 84-118 (138)
81 PF03681 UPF0150: Uncharacteri 24.7 81 0.0018 18.6 2.4 17 111-127 30-46 (48)
82 smart00463 SMR Small MutS-rela 24.7 2.1E+02 0.0045 18.7 4.8 36 109-148 8-43 (80)
83 TIGR00687 pyridox_kin pyridoxa 23.7 1.3E+02 0.0028 24.9 4.2 40 90-130 218-257 (286)
84 PF09453 HIRA_B: HIRA B motif; 23.6 84 0.0018 16.4 1.9 19 139-157 3-21 (24)
85 PF04539 Sigma70_r3: Sigma-70 23.4 1.2E+02 0.0026 19.6 3.3 28 21-48 4-31 (78)
86 PRK12412 pyridoxal kinase; Rev 23.2 1.4E+02 0.0029 24.7 4.2 39 90-129 208-246 (268)
87 PF14804 Jag_N: Jag N-terminus 23.1 1.2E+02 0.0025 18.8 2.9 29 110-145 5-33 (52)
88 KOG1930 Focal adhesion protein 22.7 54 0.0012 29.5 1.7 18 105-122 214-231 (483)
89 TIGR02261 benz_CoA_red_D benzo 22.6 1.5E+02 0.0033 24.9 4.3 51 64-121 104-157 (262)
90 cd01169 HMPP_kinase 4-amino-5- 22.4 1.5E+02 0.0032 23.6 4.2 40 88-128 201-240 (242)
91 cd01173 pyridoxal_pyridoxamine 22.2 1.5E+02 0.0031 24.0 4.1 41 88-129 211-251 (254)
92 cd04703 Asparaginase_2_like A 21.9 4.2E+02 0.0091 22.1 6.7 54 87-147 174-231 (246)
93 PRK07105 pyridoxamine kinase; 21.9 1.6E+02 0.0034 24.4 4.4 41 88-129 215-255 (284)
94 COG0771 MurD UDP-N-acetylmuram 21.8 69 0.0015 29.1 2.3 61 60-124 346-412 (448)
95 TIGR01999 iscU FeS cluster ass 21.7 2.5E+02 0.0054 20.4 4.9 50 76-125 44-93 (124)
96 COG1577 ERG12 Mevalonate kinas 21.3 4.3E+02 0.0094 22.7 6.9 59 89-151 96-157 (307)
97 PF14593 PH_3: PH domain; PDB: 21.2 84 0.0018 22.5 2.2 16 70-85 36-51 (104)
98 cd01262 PH_PDK1 3-Phosphoinosi 20.8 72 0.0016 22.3 1.7 12 70-81 24-35 (89)
99 PF01713 Smr: Smr domain; Int 20.7 1.8E+02 0.0039 19.2 3.7 33 109-146 5-37 (83)
100 TIGR02000 NifU_proper Fe-S clu 20.5 3E+02 0.0065 23.4 5.8 48 72-119 39-88 (290)
101 PRK12616 pyridoxal kinase; Rev 20.5 1.6E+02 0.0036 24.2 4.2 39 90-129 211-249 (270)
102 PRK14606 ruvA Holliday junctio 20.4 1.5E+02 0.0034 23.4 3.8 36 88-123 150-185 (188)
No 1
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-49 Score=314.24 Aligned_cols=185 Identities=64% Similarity=0.995 Sum_probs=181.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
|.++||||++|.+||..++++++.+++++|+++.++.++|..+.+++.|+||+|++.+|+++|+||+|..|||||.+.|+
T Consensus 74 ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~ph 153 (271)
T KOG0173|consen 74 IAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPH 153 (271)
T ss_pred cccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccCCCccc
Q 029142 81 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRT 160 (198)
Q Consensus 81 Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~~~~~~ 160 (198)
|+....+|+++|||+..|+++||++|+|||++|||++|+++|+.+++.+|+.||+|+++|||++.+.+++|+|..++.+.
T Consensus 154 GStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~ 233 (271)
T KOG0173|consen 154 GSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKG 233 (271)
T ss_pred CCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCc-cceeeeeEeEeccce
Q 029142 161 FVNAKGYSFPK-KTEVLLTKITPLRER 186 (198)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 186 (198)
.|...|.||+ +|.||+++|.|+.+.
T Consensus 234 -~r~~~y~~~~gtT~VL~~~v~~l~~~ 259 (271)
T KOG0173|consen 234 -ERTGRYKFKPGTTAVLKEKVYPLLVE 259 (271)
T ss_pred -cccceeeeCCCceEEEeeeeeeeeee
Confidence 7999999999 999999999999733
No 2
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-38 Score=254.05 Aligned_cols=150 Identities=25% Similarity=0.321 Sum_probs=145.8
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|++|++||+||..+|++.+.++++.+++.|++.++++|+++.++++++++++.++ .||++++|+||+|.+||+||++||
T Consensus 37 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp 116 (188)
T cd03761 37 INPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDS 116 (188)
T ss_pred ccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcC
Confidence 6899999999999999999999999999999999999999999999999999886 489999999999998999999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
+|++.+++++|+|+|+..++++||+.|+++||.+||++++.+||+.+++||..++++++|++|+++|++.+
T Consensus 117 ~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 117 DGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred CceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999764
No 3
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-38 Score=253.45 Aligned_cols=153 Identities=73% Similarity=1.150 Sum_probs=149.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.++++++++++.|+.||+|++|+||+|.+||+||.+||+
T Consensus 37 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~ 116 (189)
T cd03763 37 IAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPH 116 (189)
T ss_pred ecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCC
Confidence 68999999999999999999999999999999999999999999999999999988999999999999889999999999
Q ss_pred CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccc
Q 029142 81 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNH 153 (198)
Q Consensus 81 Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~ 153 (198)
|++.+++|+|+|+|+..++++||++|+|+||.+||++++++||+.+.+||+.++++++|++|+++|++..+||
T Consensus 117 G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 117 GSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred CCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-37 Score=249.47 Aligned_cols=150 Identities=23% Similarity=0.298 Sum_probs=143.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc---CCccceEEEEEEEeC-CCCEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---QGYVQAALVLGGVDC-TGPHLHT 76 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~---~~p~gv~~ivaG~D~-~gp~Ly~ 76 (198)
|+++++||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| ++||++++|+||||+ .||+||+
T Consensus 38 I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~ 117 (193)
T cd03758 38 LSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYY 117 (193)
T ss_pred eCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEE
Confidence 689999999999999999999999999999999999999999999999988543 359999999999996 6899999
Q ss_pred ECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 77 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 77 idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.+|++.+.+||..++++++|++|+++|++.+
T Consensus 118 ~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 118 IDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred ECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-37 Score=246.94 Aligned_cols=150 Identities=24% Similarity=0.287 Sum_probs=143.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-CCccceEEEEEEEeCC-CCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-QGYVQAALVLGGVDCT-GPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-~~p~gv~~ivaG~D~~-gp~Ly~id 78 (198)
|++|++||+||..+|++.+.++++.+++.|++.++++|+++.+++++++++|.+ .+||++++||||||++ ||+||++|
T Consensus 40 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D 119 (195)
T cd03759 40 IGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMD 119 (195)
T ss_pred eCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEc
Confidence 689999999999999999999999999999999999999999999999999866 4799999999999964 59999999
Q ss_pred CCCceeecC-eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 79 PHGSTDTLP-FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 79 p~Gs~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
|+|++..++ ++|+|+|+..++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++..
T Consensus 120 ~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 120 LIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred CCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 999998887 999999999999999999999999999999999999999999999999999999999998753
No 6
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.2e-37 Score=243.38 Aligned_cols=149 Identities=34% Similarity=0.521 Sum_probs=145.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeC-CCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~-~gp~Ly~idp 79 (198)
|++|++|++||..+|++.+.++++.+++.|++.++++++++.++++++++++++++||++++||||+|+ +||+||.+||
T Consensus 37 i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~ 116 (188)
T cd03762 37 LHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPL 116 (188)
T ss_pred ccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECC
Confidence 689999999999999999999999999999999999999999999999999999999999999999996 7899999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEE
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 149 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~ 149 (198)
+|++.+++++++|+|+..++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++.
T Consensus 117 ~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 117 GGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred CCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=252.48 Aligned_cols=156 Identities=31% Similarity=0.419 Sum_probs=149.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeCCCCEEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCTGPHLHTI 77 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~~gp~Ly~i 77 (198)
|+|||+|++||+.||++.++++++.+++.|++.++++|+++.+++++++++++++ +||++++|+||+|++||+||++
T Consensus 67 I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~ 146 (236)
T COG0638 67 IDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYST 146 (236)
T ss_pred ecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEE
Confidence 6899999999999999999999999999999999999999999999999999885 6999999999999877999999
Q ss_pred CCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEec-CCeEEeccccCC
Q 029142 78 YPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKEYLRNHLLP 156 (198)
Q Consensus 78 dp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k-~g~~~~~~~~~~ 156 (198)
||+|++.+++++|+|+|+..++++||+.|+++|+.|||++++++||+.+++||..++++++|++|++ +|.+.+.+.++.
T Consensus 147 Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~ 226 (236)
T COG0638 147 DPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIK 226 (236)
T ss_pred CCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998999999999999 788888766543
No 8
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-37 Score=250.67 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=140.6
Q ss_pred CcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCC-CCCHHHHHHHHHHHHhc----c-------CCccceEEEEEEEeC-
Q 029142 3 PNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR-ESRVVTALTLLKKHLFN----Y-------QGYVQAALVLGGVDC- 69 (198)
Q Consensus 3 ~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~-~i~v~~la~~l~~~l~~----~-------~~p~gv~~ivaG~D~- 69 (198)
+||+||.||..||++.+++++|.+++.|++.+|+ +++++.+|+++++++++ + .+||+|++|+||||+
T Consensus 42 ~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~ 121 (236)
T cd03765 42 RVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKG 121 (236)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECC
Confidence 7899999999999999999999999999999999 89999999999887544 3 269999999999994
Q ss_pred CCCEEEEECCCCceeec----CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC
Q 029142 70 TGPHLHTIYPHGSTDTL----PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 145 (198)
Q Consensus 70 ~gp~Ly~idp~Gs~~~~----~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~ 145 (198)
.||+||++||+|++.++ +|+|+|+ +..++++||++|+++||++||+++|++||..++.||..+|++++|++|+|+
T Consensus 122 ~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~ 200 (236)
T cd03765 122 EEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERD 200 (236)
T ss_pred CCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECC
Confidence 78999999999999998 5689996 699999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccccCC
Q 029142 146 HKEYLRNHLLP 156 (198)
Q Consensus 146 g~~~~~~~~~~ 156 (198)
|.+...-..++
T Consensus 201 G~~~~~~~~~~ 211 (236)
T cd03765 201 SLQVGHYRRIE 211 (236)
T ss_pred CeeeeeeEEec
Confidence 99875544443
No 9
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-37 Score=244.56 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=143.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHH-hhhhhcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeC-CCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQ-LHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDC-TGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~-~~~~~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~-~gp~Ly 75 (198)
|++|++||++|..+|++.+.++++.+++ .+++.++.+++++.+++++++++|.++ +||++++|+||||+ .||+||
T Consensus 39 i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly 118 (197)
T cd03760 39 VGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLG 118 (197)
T ss_pred ecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEE
Confidence 6899999999999999999999999987 566789999999999999999987653 69999999999997 689999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEecc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE--GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRN 152 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~--~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~ 152 (198)
++||+|++.+++++|+|+|+..++++||+.|++ +||++||++++++||+.+.+||..++++++|++|+++|++...|
T Consensus 119 ~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 119 YVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred EEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999986544
No 10
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-36 Score=241.28 Aligned_cols=150 Identities=33% Similarity=0.440 Sum_probs=145.2
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|+++++|+++|..+|++.+.+.++.+++.|++.++++++++.+++++++++|.++ +||++++|+||+|.+||+||.+||
T Consensus 37 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~ 116 (188)
T cd03764 37 IDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDP 116 (188)
T ss_pred ccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECC
Confidence 6899999999999999999999999999999999999999999999999998874 699999999999987899999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
+|++.+++++|+|+|+..++++||+.|+++|+.+||++++++||+.+.+||..++++++|++++++|++.+
T Consensus 117 ~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 117 LGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred CCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765
No 11
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.7e-36 Score=240.54 Aligned_cols=147 Identities=32% Similarity=0.453 Sum_probs=142.8
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|+++++|+++|..+|++.+.++++.+++.|++.++++++++.++++++++++.++ +||++++|+||+|.+||+||.+||
T Consensus 38 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~ 117 (185)
T TIGR03634 38 IDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDP 117 (185)
T ss_pred cCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECC
Confidence 6899999999999999999999999999999999999999999999999998874 699999999999998999999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|+
T Consensus 118 ~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 118 AGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred CCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 12
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-36 Score=245.82 Aligned_cols=150 Identities=21% Similarity=0.283 Sum_probs=143.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCC-CCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCT-GPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~-gp~Ly~id 78 (198)
|+++++||+||..||++.++++++.+++.|++.++++++++.+++++++++|.+| +||++++||||+|++ +|+||++|
T Consensus 45 I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D 124 (212)
T cd03757 45 LTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYD 124 (212)
T ss_pred cCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEc
Confidence 6899999999999999999999999999999999999999999999999998765 599999999999974 59999999
Q ss_pred CCCceeecCeEEEecChHHHHHHHHhhcc---------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEE
Q 029142 79 PHGSTDTLPFATMGSGSLAAMAMFESKYK---------EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 149 (198)
Q Consensus 79 p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~---------~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~ 149 (198)
|+|++.+++++|+|+|+..++++||+.|+ ++||++||++++++||+.+.+||..++++++|++|+++|++.
T Consensus 125 ~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~ 204 (212)
T cd03757 125 PVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEE 204 (212)
T ss_pred CccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEE
Confidence 99999999999999999999999999985 899999999999999999999999999999999999999865
Q ss_pred e
Q 029142 150 L 150 (198)
Q Consensus 150 ~ 150 (198)
.
T Consensus 205 ~ 205 (212)
T cd03757 205 E 205 (212)
T ss_pred E
Confidence 4
No 13
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.7e-36 Score=250.82 Aligned_cols=155 Identities=24% Similarity=0.299 Sum_probs=147.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCC-ccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~-p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|++|++|++||..+|++.+.++++.+++.|++.++++|+++.++++|+++++++|. |+.+++|+||+|.+||+||++||
T Consensus 76 I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp 155 (247)
T PTZ00488 76 INPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDN 155 (247)
T ss_pred cCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcC
Confidence 68999999999999999999999999999999999999999999999999998853 56666899999998999999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++.+++.++
T Consensus 156 ~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei 231 (247)
T PTZ00488 156 DGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDC 231 (247)
T ss_pred CcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876544
No 14
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-36 Score=244.96 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=144.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++|++||+||..+|++.+.++++.+++.|++.++++++++.++++|++++++| .+||++++|+||||..||+||
T Consensus 63 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly 142 (227)
T cd03750 63 ITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLY 142 (227)
T ss_pred EcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEE
Confidence 689999999999999999999999999999999999999999999999988544 369999999999998899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC-CeEEecccc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHL 154 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~-g~~~~~~~~ 154 (198)
++||+|++.+++++|+|+|+..++++||++|+++||++||++++++||+.+.+||+ ++++++|++++++ |.+.+.|.+
T Consensus 143 ~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~e 221 (227)
T cd03750 143 QVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAE 221 (227)
T ss_pred EECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHH
Confidence 99999999999999999999999999999999999999999999999999998885 8999999999995 788776654
Q ss_pred C
Q 029142 155 L 155 (198)
Q Consensus 155 ~ 155 (198)
+
T Consensus 222 i 222 (227)
T cd03750 222 I 222 (227)
T ss_pred H
Confidence 3
No 15
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-35 Score=233.39 Aligned_cols=150 Identities=42% Similarity=0.587 Sum_probs=145.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCC-ccceEEEEEEEeC-CCCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDC-TGPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~-p~gv~~ivaG~D~-~gp~Ly~id 78 (198)
|+++++|++||..+|++.+.++++.+++.|++.++++++++.+++++++++|.+++ ||++++||||+|+ ++|+||.+|
T Consensus 37 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id 116 (189)
T cd01912 37 ISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVD 116 (189)
T ss_pred ccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEEC
Confidence 68999999999999999999999999999999999999999999999999998875 9999999999997 679999999
Q ss_pred CCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 79 PHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 79 p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
|+|++.+++++|+|+++..++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|++..
T Consensus 117 ~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 117 PLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred CCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998753
No 16
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.7e-34 Score=235.79 Aligned_cols=146 Identities=28% Similarity=0.375 Sum_probs=139.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|+++++||+||..+|++.+.+.++.++..|++.++++++++.++++++++++.| ++||+|++||||+|..||+||
T Consensus 65 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly 144 (224)
T TIGR03633 65 IDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLF 144 (224)
T ss_pred ECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEE
Confidence 689999999999999999999999999999999999999999999999987544 469999999999998889999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
++||.|++.+++++|+|+|+..++++||+.|+++|+.+||++++++||..+.+ |..++++++|++|+++|.
T Consensus 145 ~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~ 215 (224)
T TIGR03633 145 ETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDK 215 (224)
T ss_pred EECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999887 888999999999999884
No 17
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.2e-34 Score=235.93 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=142.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc----CCccceEEEEEEEeC--CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY----QGYVQAALVLGGVDC--TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~----~~p~gv~~ivaG~D~--~gp~L 74 (198)
|++|++||+||..+|++.+.++++.+++.|++.++++++++.++++|+++++++ .+||++++||||||. .+|+|
T Consensus 39 i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~L 118 (219)
T TIGR03690 39 TDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRI 118 (219)
T ss_pred cCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEE
Confidence 689999999999999999999999999999999999999999999999988654 579999999999996 46999
Q ss_pred EEECCCC-ceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCc-------EEEEEEecCC
Q 029142 75 HTIYPHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN-------VDVCVITKGH 146 (198)
Q Consensus 75 y~idp~G-s~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~-------iei~ii~k~g 146 (198)
|++||+| ++..++++|+|+|+..++++||+.|+++||.+||++++++||..+.+||..+++. ++|++|+++|
T Consensus 119 y~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g 198 (219)
T TIGR03690 119 FSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG 198 (219)
T ss_pred EEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc
Confidence 9999999 5777899999999999999999999999999999999999999999999877764 3999999999
Q ss_pred eEEeccccC
Q 029142 147 KEYLRNHLL 155 (198)
Q Consensus 147 ~~~~~~~~~ 155 (198)
++.+.+.++
T Consensus 199 ~~~l~~~ei 207 (219)
T TIGR03690 199 ARRVPESEL 207 (219)
T ss_pred eEEcCHHHH
Confidence 988765543
No 18
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-34 Score=234.39 Aligned_cols=143 Identities=18% Similarity=0.235 Sum_probs=135.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|+++++|++||..+|++.+.++++.+++.|+++++++++++.+++.++..++.+ ++||+|++||||||..||+||
T Consensus 61 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly 140 (211)
T cd03749 61 VDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLF 140 (211)
T ss_pred eCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEE
Confidence 689999999999999999999999999999999999999999999999877542 469999999999998899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEe
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYK--EGLTKDEGIQLVVDAICSGIFNDL-GSGSNVDVCVIT 143 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~--~~ms~eeai~la~~al~~~~~~d~-~sg~~iei~ii~ 143 (198)
++||+|++.+++++|+|+|+..++++||++|+ ++||.+||+++++++|+.++.+|. .+++++||++|+
T Consensus 141 ~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 141 QTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred EECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999999999999999999999 599999999999999999999887 899999999984
No 19
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.7e-34 Score=235.55 Aligned_cols=150 Identities=26% Similarity=0.340 Sum_probs=139.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|+++++||+||..+|++.+.++++.+++.|++.++++++++.+++++++.++.| .+||++++||||+|..||+||
T Consensus 72 I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly 151 (241)
T PRK03996 72 IDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLF 151 (241)
T ss_pred EcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEE
Confidence 689999999999999999999999999999999999999999999999987544 469999999999998899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC--eEEec
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH--KEYLR 151 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g--~~~~~ 151 (198)
.+||+|++.+++++|+|+|+..++++||+.|+++|+++||++++++||..+.++ ..++++++|++++++| .+.+.
T Consensus 152 ~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~ 228 (241)
T PRK03996 152 ETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS 228 (241)
T ss_pred EECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence 999999999999999999999999999999999999999999999999999876 4689999999999987 44443
No 20
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-34 Score=231.31 Aligned_cols=142 Identities=20% Similarity=0.173 Sum_probs=134.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++|++|++||+++|++.+.++++.+++.|++.++++++++.++++|+++++.| .+||++++|+||+|..||+||
T Consensus 66 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly 145 (212)
T cd03751 66 VDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLY 145 (212)
T ss_pred ecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEE
Confidence 689999999999999999999999999999999999999999999999876443 479999999999998899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
++||+|++.+++++|+|+|+..++++||++|+++||++||++++++||..+++.+..++.++||+++
T Consensus 146 ~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 146 MIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999877678889999874
No 21
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-34 Score=229.68 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=134.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHh---cc--CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLF---NY--QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~---~~--~~p~gv~~ivaG~D~-~gp~L 74 (198)
|+++++||+||..+|++.+.++++.+++.|++.++++|+++.++++++..++ ++ .|||+|++|+||||. .||+|
T Consensus 66 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~l 145 (213)
T cd03752 66 IDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQL 145 (213)
T ss_pred ecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEE
Confidence 6899999999999999999999999999999999999999999999997653 32 469999999999995 78999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
|.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+.+||..++.+++|+++
T Consensus 146 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 146 YQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999889999999875
No 22
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.1e-33 Score=234.87 Aligned_cols=146 Identities=19% Similarity=0.334 Sum_probs=138.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~-~gp~L 74 (198)
|+++|+||++|..+|++.+.+.++.++..|++.++.+++++.+++.++..++.| .+||+|++||||||+ .||+|
T Consensus 68 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~L 147 (253)
T PTZ00246 68 IDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQL 147 (253)
T ss_pred ecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEE
Confidence 689999999999999999999999999999999999999999999999775432 369999999999995 78999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g 146 (198)
|++||+|++.+++++|+|+|+..++++||+.|+++|+.+||++++++||+.+..||..++++++|++|+++|
T Consensus 148 y~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 148 YHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred EEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886
No 23
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-33 Score=227.83 Aligned_cols=142 Identities=25% Similarity=0.403 Sum_probs=135.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|+++++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.++.| .+||++++||||+|+.||+||
T Consensus 64 I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly 143 (211)
T cd03756 64 IDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLF 143 (211)
T ss_pred EcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEE
Confidence 689999999999999999999999999999999999999999999999887543 359999999999999899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEe
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 143 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~ 143 (198)
++||+|++.+++++|+|+|+..++++||+.|+|+|+.+||++++++||..+.++|. ++++++|++|+
T Consensus 144 ~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 144 ETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred EECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999998886 99999999986
No 24
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-33 Score=227.82 Aligned_cols=139 Identities=20% Similarity=0.290 Sum_probs=131.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~-~gp~L 74 (198)
|++|++|++||.++|++.+.++++.+++.|++.++++|+++.++++++++++.| .+||++++|+||+|+ .||+|
T Consensus 63 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~L 142 (207)
T cd03755 63 LDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRL 142 (207)
T ss_pred ECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEE
Confidence 689999999999999999999999999999999999999999999999988544 369999999999997 48999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
|++||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.+ .++.++||+++
T Consensus 143 y~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 143 YQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred EEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 999999999999999999999999999999999999999999999999999986 57899999985
No 25
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-33 Score=227.56 Aligned_cols=141 Identities=23% Similarity=0.364 Sum_probs=133.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc----------CCccceEEEEEEEeCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY----------QGYVQAALVLGGVDCT 70 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~----------~~p~gv~~ivaG~D~~ 70 (198)
|++|++|++||..+|++.+.+.++.+++.|++.++++++++.++++++++++++ .+||+|++||||+|..
T Consensus 63 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~ 142 (213)
T cd03753 63 IDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN 142 (213)
T ss_pred EcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC
Confidence 689999999999999999999999999999999999999999999999988754 2699999999999998
Q ss_pred CCEEEEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 71 GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 71 gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
||+||.+||+|++.+++++|+|+|+..++++|+++|+++||.+||++++++||+.+..++ .++++++|+++
T Consensus 143 gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 143 GPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred CCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999988766 68899999985
No 26
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=219.61 Aligned_cols=153 Identities=22% Similarity=0.310 Sum_probs=142.7
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc----------CCccceEEEEEEEeCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY----------QGYVQAALVLGGVDCT 70 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~----------~~p~gv~~ivaG~D~~ 70 (198)
|++||+|++||+.||++.++++.|.++++|++.|+++++|+.+.+.++++-.++ .|||||++|+||+|.+
T Consensus 70 id~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~ 149 (241)
T KOG0176|consen 70 IDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET 149 (241)
T ss_pred hhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC
Confidence 689999999999999999999999999999999999999999999999987554 4699999999999999
Q ss_pred CCEEEEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC-CeEE
Q 029142 71 GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEY 149 (198)
Q Consensus 71 gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~-g~~~ 149 (198)
||+||..||+|++.++++-|+|+|+.-|.+.|++.|+++|+++||+.+++..|+.+++.. .+.+|+++.++++. +.++
T Consensus 150 gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~~f~~ 228 (241)
T KOG0176|consen 150 GPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEGEFHI 228 (241)
T ss_pred CceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccCceEe
Confidence 999999999999999999999999999999999999999999999999999999999765 46789999999997 5777
Q ss_pred ecccc
Q 029142 150 LRNHL 154 (198)
Q Consensus 150 ~~~~~ 154 (198)
..|.+
T Consensus 229 ~t~EE 233 (241)
T KOG0176|consen 229 YTPEE 233 (241)
T ss_pred cCHHH
Confidence 66544
No 27
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.4e-32 Score=224.97 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=137.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcC-CCCCHHHHHHHHHHHHhc----cCCccceEEEEEEEeC--CCCE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKKHLFN----YQGYVQAALVLGGVDC--TGPH 73 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~i~v~~la~~l~~~l~~----~~~p~gv~~ivaG~D~--~gp~ 73 (198)
|+|||+||+||+.+|++.+++.++.+++.|++.++ .+++++.+++.+++.+.. +.+||+|++|+||||+ .||+
T Consensus 56 I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~ 135 (228)
T TIGR03691 56 LYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQ 135 (228)
T ss_pred ecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCE
Confidence 78999999999999999999999999999999997 789999999988887643 3589999999999984 6899
Q ss_pred EEEECCCCceeecC-eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH--hccCCCCCcEEEEEEecCC----
Q 029142 74 LHTIYPHGSTDTLP-FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI--FNDLGSGSNVDVCVITKGH---- 146 (198)
Q Consensus 74 Ly~idp~Gs~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~--~~d~~sg~~iei~ii~k~g---- 146 (198)
||.+||+|++.+++ ++|+|+|+..++++||++|+++||.+||++++++||+.++ ++|..++.++||+++++++
T Consensus 136 Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~ 215 (228)
T TIGR03691 136 LYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRA 215 (228)
T ss_pred EEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccc
Confidence 99999999999976 8999999999999999999999999999999999999995 4667899999999999764
Q ss_pred eEEecc
Q 029142 147 KEYLRN 152 (198)
Q Consensus 147 ~~~~~~ 152 (198)
.+.+.+
T Consensus 216 f~~l~~ 221 (228)
T TIGR03691 216 FRRITG 221 (228)
T ss_pred eEECCH
Confidence 555443
No 28
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.8e-32 Score=216.11 Aligned_cols=142 Identities=34% Similarity=0.505 Sum_probs=137.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeC-CCCEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDC-TGPHLHT 76 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~-~gp~Ly~ 76 (198)
|+++++||++|..+|++.+.+.++.++..|++.++++++++.++++++++++.++ +||++++|+||+|. .||+||.
T Consensus 37 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~ 116 (182)
T cd01906 37 IDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYS 116 (182)
T ss_pred ECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEE
Confidence 6889999999999999999999999999999999999999999999999998875 79999999999997 7899999
Q ss_pred ECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 77 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 77 idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.++|..++.+++|++|
T Consensus 117 id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 117 VDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred ECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999989999999885
No 29
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-32 Score=224.12 Aligned_cols=141 Identities=20% Similarity=0.301 Sum_probs=131.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH--h-cc--CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL--F-NY--QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l--~-~~--~~p~gv~~ivaG~D~-~gp~L 74 (198)
|+++++|++||+.+|++.+.++++.++..|+++++++|+++.+|+++++++ | ++ .|||++++|+||+|+ +||+|
T Consensus 65 I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~L 144 (215)
T cd03754 65 ITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQL 144 (215)
T ss_pred EcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEE
Confidence 689999999999999999999999999999999999999999999999863 3 22 359999999999996 68999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCC--C--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEG--L--TKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~--m--s~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
|++||+|++.+++++|+|+|+..++++||+.|+++ | |.+||++++++||..+++||. ++.++||+|+
T Consensus 145 y~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 145 YKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred EEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 99999999999999999999999999999999995 7 999999999999999999996 5899999885
No 30
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.1e-32 Score=222.74 Aligned_cols=141 Identities=26% Similarity=0.381 Sum_probs=134.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCC-CCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCT-GPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~-gp~L 74 (198)
|+++++||++|..+|++.+.+.++..+..|++.++++++++.+++++++++++| .+|+++++||||+|++ ||+|
T Consensus 63 i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~L 142 (209)
T cd01911 63 IDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQL 142 (209)
T ss_pred ecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEE
Confidence 689999999999999999999999999999999999999999999999987543 3599999999999975 8999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
|.+||.|++.+++++++|+|+..++++||+.|+++|+.+||++++++||..+.+||. ++++++|+++
T Consensus 143 y~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 143 YQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred EEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999998 9999999985
No 31
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.98 E-value=1.7e-31 Score=211.86 Aligned_cols=142 Identities=29% Similarity=0.383 Sum_probs=131.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHH----Hh-ccCCccceEEEEEEEeCCC-CEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKH----LF-NYQGYVQAALVLGGVDCTG-PHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~----l~-~~~~p~gv~~ivaG~D~~g-p~L 74 (198)
|++|++|++||..+|++.+.++++.++..|++.++++++++.+++.+++. ++ .+++|+++++|+||+|++| |+|
T Consensus 42 i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l 121 (190)
T PF00227_consen 42 INDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQL 121 (190)
T ss_dssp EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEE
T ss_pred ccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccce
Confidence 57999999999999999999999999999999999999999666665544 33 3367999999999999866 999
Q ss_pred EEECCCCceeec-CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 75 HTIYPHGSTDTL-PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 75 y~idp~Gs~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
|.+||+|++.++ +++|+|+|+..++++||+.|+++||.+||++++++||+.+.++|..++++++|+||
T Consensus 122 ~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 122 YSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp EEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred eeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999 69999999999999999999999999999999999999999999999999999987
No 32
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=206.98 Aligned_cols=150 Identities=31% Similarity=0.508 Sum_probs=145.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeC-CCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~-~gp~Ly~idp 79 (198)
|+|||+||-||.+||.|.+.+.++..+..|....+.+++|...|+.++++.|+|+.-+.+.+||||||+ .|.++|.+-.
T Consensus 56 itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~ipl 135 (224)
T KOG0174|consen 56 ITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPL 135 (224)
T ss_pred ccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeec
Confidence 689999999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
.|+..+.++..-||||.+++++++..|+|+||+||+++++.+|+..++.||-.||+.|.+.+|+++|+++.
T Consensus 136 GG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~ 206 (224)
T KOG0174|consen 136 GGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERR 206 (224)
T ss_pred CceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999843
No 33
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-31 Score=203.43 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=147.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc---CCccceEEEEEEEeC-CCCEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---QGYVQAALVLGGVDC-TGPHLHT 76 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~---~~p~gv~~ivaG~D~-~gp~Ly~ 76 (198)
|++++.|+.+|..+|+-+++++++..+++|++++|.+++|+.+|++.++.+..+ +.||.|++|+||+|+ .||.||+
T Consensus 38 ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~ 117 (200)
T KOG0177|consen 38 LSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYY 117 (200)
T ss_pred eccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceee
Confidence 689999999999999999999999999999999999999999999999998765 569999999999998 6799999
Q ss_pred ECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 77 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 77 idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
+|..|+..+.+|++.|.|+.++.++|++.|+|+||.+||+++..+|+.++..|-..+-.++.|.||+|||++.+.++..
T Consensus 118 iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~~ 196 (200)
T KOG0177|consen 118 IDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDDINF 196 (200)
T ss_pred ehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceecccccc
Confidence 9999999999999999999999999999999999999999999999999999998888999999999999998886644
No 34
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-31 Score=205.57 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=145.2
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc---C--CccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---Q--GYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~---~--~p~gv~~ivaG~D~~gp~Ly 75 (198)
|.++|+|.+||+.+|++.+.+..|+.++.|...|+++|++..+++.++..++.| . +|||++++++|||..+|.||
T Consensus 68 i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~Ly 147 (233)
T KOG0181|consen 68 ITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLY 147 (233)
T ss_pred ccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEE
Confidence 689999999999999999999999999999999999999999999999988766 2 59999999999999999999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
++||+|++..|+++|+|.+...+.++||++|.++|.+++++..|+..|++..+... +.+|+||+++..++++.+.|-++
T Consensus 148 QvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~lt~~eI 226 (233)
T KOG0181|consen 148 QVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRRLTPAEI 226 (233)
T ss_pred EECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceeecCHHHH
Confidence 99999999999999999999999999999999999999999999999999998774 67999999999999998876544
No 35
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=204.18 Aligned_cols=150 Identities=22% Similarity=0.318 Sum_probs=139.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCC-CEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTG-PHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~g-p~L 74 (198)
+++|++|++||+.||++.+++++|.+|+.|+++.+.|++++.+.++++++-++| ++|||++.|++|+|++| |+|
T Consensus 66 ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~l 145 (249)
T KOG0183|consen 66 LDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRL 145 (249)
T ss_pred ecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeee
Confidence 578999999999999999999999999999999999999999999999987665 56999999999999987 999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEEec
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEG--LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLR 151 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~--ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~~~ 151 (198)
|++||+|.+.+|++.|+|.+++.+..+||+.|++. .+..++++|++++|...... .+.|++++|+++++ .+++.
T Consensus 146 yqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~l~ 222 (249)
T KOG0183|consen 146 YQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKMLE 222 (249)
T ss_pred EeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceeecC
Confidence 99999999999999999999999999999999976 78899999999999998874 45899999999987 77776
Q ss_pred cc
Q 029142 152 NH 153 (198)
Q Consensus 152 ~~ 153 (198)
+-
T Consensus 223 ~~ 224 (249)
T KOG0183|consen 223 SE 224 (249)
T ss_pred HH
Confidence 44
No 36
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.8e-30 Score=205.33 Aligned_cols=155 Identities=24% Similarity=0.344 Sum_probs=150.2
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCc-cceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p-~gv~~ivaG~D~~gp~Ly~idp 79 (198)
||+++.-+.||.+||++..-+.+..+|.+|++.+++.|+|..++++|++++++|++. +.+...|+|||..||.||+||.
T Consensus 108 In~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDs 187 (285)
T KOG0175|consen 108 INPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDS 187 (285)
T ss_pred echhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcC
Confidence 789999999999999999999999999999999999999999999999999999985 8999999999999999999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
.|+-.+-+-.++|||+.+|+++|++.|++|||.|||.+|+++||..+..||..||+.++++.|+.+|...+.+..+
T Consensus 188 eG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv 263 (285)
T KOG0175|consen 188 EGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDV 263 (285)
T ss_pred CCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887655
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-28 Score=191.90 Aligned_cols=150 Identities=23% Similarity=0.322 Sum_probs=141.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCC-CEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTG-PHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~g-p~Ly~id 78 (198)
++|++.++.+|++||+..+...++..+..|++.+++.|++..+|++|+.+||..| .||.+..|+||+|++| +.+|+.|
T Consensus 66 l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyD 145 (235)
T KOG0179|consen 66 LGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYD 145 (235)
T ss_pred ccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeec
Confidence 5799999999999999999999999999999999999999999999999999776 4999999999999977 9999999
Q ss_pred CCCceeecCeEEEecChHHHHHHHHhhcc-----------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 79 PHGSTDTLPFATMGSGSLAAMAMFESKYK-----------EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 79 p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~-----------~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
|.|++.+.-+.|.|+++..++++|++... +.+|+|+|+.|+.+++..+.+||+.+|++++|+|++|+|+
T Consensus 146 PvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV 225 (235)
T KOG0179|consen 146 PVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGV 225 (235)
T ss_pred CCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCE
Confidence 99999999999999999999999997642 3589999999999999999999999999999999999998
Q ss_pred EEe
Q 029142 148 EYL 150 (198)
Q Consensus 148 ~~~ 150 (198)
+..
T Consensus 226 ~~e 228 (235)
T KOG0179|consen 226 EVE 228 (235)
T ss_pred EEE
Confidence 743
No 38
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-28 Score=191.36 Aligned_cols=149 Identities=20% Similarity=0.261 Sum_probs=139.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH---hccC--CccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL---FNYQ--GYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l---~~~~--~p~gv~~ivaG~D~-~gp~L 74 (198)
|+|||+|+++|+.+|+..+++.+|..++.|.+.+++++|.+++++.++++- +||. ||||||+|.+|||. .|.+|
T Consensus 68 l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqL 147 (249)
T KOG0178|consen 68 LNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQL 147 (249)
T ss_pred cCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEE
Confidence 689999999999999999999999999999999999999999999999774 5664 69999999999998 68999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCC-CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEE
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL-TKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 149 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~m-s~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~ 149 (198)
|+.||+|++..|++.++|.++.+++++|+..|+++. +++||..+|++.|...++.+..+...+|++.++++..+.
T Consensus 148 y~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 148 YQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred EecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 999999999999999999999999999999999875 599999999999999999988889999999999986554
No 39
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9e-28 Score=190.85 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=136.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHh---c-c-CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLF---N-Y-QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~---~-~-~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++|+++++||+++|++.+.++++++|..+++.+++++++..++..|.+.++ | | +|||||.++++|+|+.|||||
T Consensus 66 iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~ 145 (264)
T KOG0863|consen 66 IDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLY 145 (264)
T ss_pred cccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeE
Confidence 6899999999999999999999999999999999999999999999987664 3 3 679999999999999999999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEecCC
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYK--EGLTKDEGIQLVVDAICSGIFND-LGSGSNVDVCVITKGH 146 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~--~~ms~eeai~la~~al~~~~~~d-~~sg~~iei~ii~k~g 146 (198)
+++|+|.+.+++..++|+.|+.++++||+... ++++.||.+..+++||+.....| ..++.|++|+|+.||.
T Consensus 146 e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863|consen 146 EFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred EEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence 99999999999999999999999999999876 58999999999999999999643 6788999999999985
No 40
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.1e-27 Score=185.81 Aligned_cols=162 Identities=17% Similarity=0.284 Sum_probs=151.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhh-hhcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeCCC-CEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHR-YHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCTG-PHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~-~~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~~g-p~Ly 75 (198)
++||+.+|++|..+|+|.+.+.+.....+.. +..++.+.|+.++.+|.+.||.+| +|++.+++|||+|.+| |+|.
T Consensus 78 VgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg 157 (256)
T KOG0185|consen 78 VGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLG 157 (256)
T ss_pred ecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEE
Confidence 5899999999999999999999987776644 556799999999999999999875 5999999999999966 9999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEecc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYK---EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRN 152 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~---~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~ 152 (198)
.+|..|..++.+..|+|.|...|.++|++.|. ++++.+||.+++.+||+...+||+.+.+.++|++|+++|+++..|
T Consensus 158 ~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p 237 (256)
T KOG0185|consen 158 YVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKP 237 (256)
T ss_pred EEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCc
Confidence 99999999999999999999999999999998 579999999999999999999999999999999999999999999
Q ss_pred ccCCCccccc
Q 029142 153 HLLPNPRTFV 162 (198)
Q Consensus 153 ~~~~~~~~~~ 162 (198)
+++...|.|+
T Consensus 238 ~qv~~~W~fa 247 (256)
T KOG0185|consen 238 YQVKTNWDFA 247 (256)
T ss_pred eeeeecchhh
Confidence 9999999874
No 41
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.2e-26 Score=174.27 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=142.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCC-CEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTG-PHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~g-p~Ly~id 78 (198)
|+|++++|.+|++.|+|.+.++++....+|+++.+++|.++.+++++|.++|++| +||.+..++||+|+++ |+++..|
T Consensus 45 igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD 124 (204)
T KOG0180|consen 45 IGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMD 124 (204)
T ss_pred cCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecc
Confidence 5789999999999999999999999999999999999999999999999999887 7999999999999865 9999999
Q ss_pred CCCceee-cCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 79 PHGSTDT-LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 79 p~Gs~~~-~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
..|+... .+|++.|.++...++++|..|+|||..++.++.+.+||-.+.+||..||....+.||+||.+.
T Consensus 125 ~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 125 LIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred cccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 9999876 589999999999999999999999999999999999999999999999999999999999764
No 42
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.3e-26 Score=179.33 Aligned_cols=146 Identities=23% Similarity=0.271 Sum_probs=135.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHh---cc--CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLF---NY--QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~---~~--~~p~gv~~ivaG~D~-~gp~L 74 (198)
|+.+|+|+++|..+|++....+++.++.++++++|.+||++.|++.++++.+ |+ +||+||.+++.|+|+ .||.+
T Consensus 72 itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~v 151 (246)
T KOG0182|consen 72 ITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSV 151 (246)
T ss_pred eeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcce
Confidence 5789999999999999999999999999999999999999999999887654 33 689999999999998 68999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEG--LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~--ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
|.+||.|.+..++++|.|-....+.++||++||++ +|.+|++++|+.||..++.-|. ..+.+||++++++..
T Consensus 152 Yk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Df-k~se~EVgvv~~~~p 225 (246)
T KOG0182|consen 152 YKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDF-KSSELEVGVVTVDNP 225 (246)
T ss_pred EeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhccc-CCcceEEEEEEcCCc
Confidence 99999999999999999999999999999999987 7799999999999999999896 558999999999864
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.92 E-value=2.3e-24 Score=169.19 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=113.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH-hccCCccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-FNYQGYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l-~~~~~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
-+++++||.||..||+|.+.+.++.+++.|+... ++.++++++.++ ++|+.|+.+.+|++ |. |+||.+||
T Consensus 39 ~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~~a~l~~~l~~~~~~~~l~~~~lv~--d~--~~ly~id~ 109 (172)
T PRK05456 39 YNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRAAVELAKDWRTDRYLRRLEAMLIVA--DK--EHSLIISG 109 (172)
T ss_pred CCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHHHHHHHHHHHhccCCCccEEEEEEE--cC--CcEEEECC
Confidence 1899999999999999999999999999998322 577777665553 45667888999994 43 79999999
Q ss_pred CCceeec--CeEEEecChHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q 029142 80 HGSTDTL--PFATMGSGSLAAMAMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 141 (198)
Q Consensus 80 ~Gs~~~~--~~~a~G~gs~~a~~~Le~~~~-~~ms~eeai~la~~al~~~~~~d~~sg~~iei~i 141 (198)
.|++.+. ++.|+|||+.+++++||+.|+ |+| ||++|+++|++.+.+||..||++++|-.
T Consensus 110 ~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 110 NGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999766 799999999999999999999 999 9999999999999999999999998854
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.92 E-value=3.3e-24 Score=167.58 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=112.5
Q ss_pred CCC-cEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH-hccCCccceEEEEEEEeCCCCEEEEEC
Q 029142 1 MAP-NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-FNYQGYVQAALVLGGVDCTGPHLHTIY 78 (198)
Q Consensus 1 I~~-~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l-~~~~~p~gv~~ivaG~D~~gp~Ly~id 78 (198)
|++ |++||+||..||++.+.++++.++++|+++.++ .+++++++++ +++++++.+.+|++++ ++||.+|
T Consensus 37 i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~~~~~~~~l~a~~iv~~~----~~ly~id 107 (171)
T cd01913 37 LYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWRTDRYLRRLEAMLIVADK----EHTLLIS 107 (171)
T ss_pred eCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHHhccCcCceEEEEEEeCC----CcEEEEC
Confidence 567 999999999999999999999999999998774 5567666664 5666556677777644 3999999
Q ss_pred CCCceeec--CeEEEecChHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q 029142 79 PHGSTDTL--PFATMGSGSLAAMAMFESKYKEG-LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 141 (198)
Q Consensus 79 p~Gs~~~~--~~~a~G~gs~~a~~~Le~~~~~~-ms~eeai~la~~al~~~~~~d~~sg~~iei~i 141 (198)
|.|++.+. ++.++|||+.+|+++||..|+++ || +.++|.+|++.+++||..||++|+|-.
T Consensus 108 ~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 108 GNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred CCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 99999998 49999999999999999999995 99 559999999999999999999998754
No 45
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-24 Score=169.75 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=130.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhc-----cCCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFN-----YQGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~-----~~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+|+++|+.+|.+.+.+++|.++..|+-+++.++|...++..++++.+- ..||||++.++++||.+||+||
T Consensus 70 V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~Ly 149 (254)
T KOG0184|consen 70 VDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLY 149 (254)
T ss_pred ecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEE
Confidence 57899999999999999999999999999999999999999999999997643 3579999999999999999999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEec
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 144 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k 144 (198)
.++|+|..+.++++|+|.|.+.|.+.||+.--..|+.+|+++.+.+.|..+-+......-.+|+.|+..
T Consensus 150 miepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~ 218 (254)
T KOG0184|consen 150 MIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGE 218 (254)
T ss_pred EEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEe
Confidence 999999999999999999999999999999888999999999999999887654333334578888875
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.91 E-value=1.7e-23 Score=163.60 Aligned_cols=128 Identities=17% Similarity=0.135 Sum_probs=112.6
Q ss_pred CCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHH-HhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 2 APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKH-LFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 2 ~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~-l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
++|++||.||..||++.+.++++.++++|++.. .+.+++.++++ .+++.+.+.+.+|++|+ ++||.+||.
T Consensus 39 ~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~~~~~~~~l~a~~iv~~~----~~ly~i~~~ 109 (171)
T TIGR03692 39 NGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWRTDRYLRRLEAMLIVADK----ETSLLISGT 109 (171)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHhhcccccccEEEEEEEcC----CCEEEEcCC
Confidence 489999999999999999999999999998843 47778888885 35665567788887644 499999999
Q ss_pred Cceeec--CeEEEecChHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Q 029142 81 GSTDTL--PFATMGSGSLAAMAMFESKY-KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 141 (198)
Q Consensus 81 Gs~~~~--~~~a~G~gs~~a~~~Le~~~-~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~i 141 (198)
|.+.+. ++.++|||+.+++++||..| +++|+ |+++|++|++.+++||..||++|+|-.
T Consensus 110 G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 110 GDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred CcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999996 69999999999999999999 57787 999999999999999999999998854
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.90 E-value=1.5e-22 Score=154.74 Aligned_cols=124 Identities=30% Similarity=0.325 Sum_probs=119.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC--CccceEEEEEEEeCCCCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ--GYVQAALVLGGVDCTGPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~--~p~gv~~ivaG~D~~gp~Ly~id 78 (198)
++++++++++|..+|++.+.++++.+++.|++.++.++++..+++.+++.++.++ +|+++++|+||+|.++|+||.+|
T Consensus 37 ~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id 116 (164)
T cd01901 37 NEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYID 116 (164)
T ss_pred ecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999988774 79999999999998889999999
Q ss_pred CCCceeec-CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 029142 79 PHGSTDTL-PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAIC 124 (198)
Q Consensus 79 p~Gs~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~ 124 (198)
|+|++.+. +++++|+++..+.++|++.|+++|+.+||++++.+||.
T Consensus 117 ~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 117 PSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred CCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 99999999 99999999999999999999999999999999999985
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.8e-07 Score=73.13 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=117.5
Q ss_pred EEEEecCchHHHHHHHHHHHHHHHhhhhhc-CCCCCHHHHHHHHHHHHh----ccC-------CccceEEEEEEEeCCC-
Q 029142 5 IYCCGAGTAADTEAVTDMVSSQLQLHRYHT-GRESRVVTALTLLKKHLF----NYQ-------GYVQAALVLGGVDCTG- 71 (198)
Q Consensus 5 i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~-~~~i~v~~la~~l~~~l~----~~~-------~p~gv~~ivaG~D~~g- 71 (198)
+.+|.+|..|-.|.+.+.+....+...... -.-+++-..+.++..... +-. --|.|++|+||-=..+
T Consensus 45 lvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~p 124 (255)
T COG3484 45 LVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEP 124 (255)
T ss_pred EEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCC
Confidence 578999999999999999887775332211 223455555555554332 211 1489999999976554
Q ss_pred CEEEEECCCCceee----cCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 72 PHLHTIYPHGSTDT----LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 72 p~Ly~idp~Gs~~~----~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
|.||.|-|.|++.+ .+|.-+|. +.+-.++|++.+..+++++||.++|+-.+...+..++.-|-.+++.++.+|..
T Consensus 125 p~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~ 203 (255)
T COG3484 125 PRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSF 203 (255)
T ss_pred ceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccce
Confidence 89999999999986 47999998 45778999999999999999999999999999998988888999999999987
Q ss_pred EEeccccCC
Q 029142 148 EYLRNHLLP 156 (198)
Q Consensus 148 ~~~~~~~~~ 156 (198)
..-..+++.
T Consensus 204 ~v~~~~ri~ 212 (255)
T COG3484 204 SVRHTLRIR 212 (255)
T ss_pred eeeeeeEec
Confidence 665555543
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.6e-06 Score=66.48 Aligned_cols=130 Identities=17% Similarity=0.149 Sum_probs=95.4
Q ss_pred CCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHh-ccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 2 APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLF-NYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 2 ~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~-~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
+..+..+++|..||+..+.+++..+++.|.-+- .+.++.+..++.. ++.+-+.+-+|++ |+ -+++-+...
T Consensus 43 ~gkvlaGFAGstADaftLfe~fe~kle~~~g~L-----~raavelaKdwr~Dk~lr~LEAmllVa--d~--~~il~isG~ 113 (178)
T COG5405 43 NGKVLAGFAGSTADAFTLFERFEAKLEQYQGDL-----FRAAVELAKDWRTDKYLRKLEAMLLVA--DK--THILIITGN 113 (178)
T ss_pred CCcEEEEecccchhHHHHHHHHHHHHHHccCcH-----HHHHHHHHHhhhhhhHHHHHhhheeEe--CC--CcEEEEecC
Confidence 357899999999999999999999999886221 2344444444432 2234566777777 44 457777788
Q ss_pred Cceee--cCeEEEecChHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEe
Q 029142 81 GSTDT--LPFATMGSGSLAAMAMFESKYKE-GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 143 (198)
Q Consensus 81 Gs~~~--~~~~a~G~gs~~a~~~Le~~~~~-~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~ 143 (198)
|-+.+ .+..|+|||..+|.+.....++. ++| |.++|.++|..+.+-+.+++.++.|-.+.
T Consensus 114 gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 114 GDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred cceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 87765 35999999999999998888763 665 55688999998887777777777776543
No 50
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=97.84 E-value=1e-05 Score=47.64 Aligned_cols=32 Identities=38% Similarity=0.638 Sum_probs=11.7
Q ss_pred CCcccccCCCCCCCCc-cceeeeeEeEecc-ceeee
Q 029142 156 PNPRTFVNAKGYSFPK-KTEVLLTKITPLR-ERVEV 189 (198)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 189 (198)
||+|+ +|...|+||+ ||+||+++| ++. +.+++
T Consensus 1 pN~kg-~r~~~Ykf~~GTTaVL~e~V-~~~~~v~eE 34 (38)
T PF12465_consen 1 PNEKG-ERQGSYKFKRGTTAVLKEKV-PLKLDVVEE 34 (38)
T ss_dssp TT------SS-----TT-S-EEEEEE-E--------
T ss_pred CCcCc-ccccccccCCCceeeEEEEe-ccEeEEEEE
Confidence 57888 8999999999 999999999 554 44443
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=94.40 E-value=0.14 Score=38.31 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=40.3
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHH
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQ 117 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~ 117 (198)
..+|-+|.+...+|-..|-||..|-+-+-..|-.++|.+||..
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 4788899999999999999999999999999999999999985
No 52
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=91.01 E-value=1.1 Score=35.78 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=41.8
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC
Q 029142 96 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 145 (198)
Q Consensus 96 ~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~ 145 (198)
+.|...|.++|++.|+.+++.++..++|..+...-..-+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 56888999999999999999999999999987666555677888776654
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.70 E-value=19 Score=30.02 Aligned_cols=50 Identities=4% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC
Q 029142 96 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 145 (198)
Q Consensus 96 ~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~ 145 (198)
+.+..+|.+.|.+.++++++.++...+|..+...-..-++.+++..++++
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 45788899999999999999999999998887555555677888877654
No 54
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=62.00 E-value=15 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEEeccccCCCcccccCCCCCCCCc-cce
Q 029142 114 EGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLLPNPRTFVNAKGYSFPK-KTE 174 (198)
Q Consensus 114 eai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 174 (198)
||++..++.|...+..|...-..+++.||+=+| .+...|+ ..-.+|.+|. +++
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf--------~~~~nF~~p~L~a~ 76 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPF--------TDAANFNPPILTAQ 76 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEech--------hhHhhcCCCceecC
Confidence 678888888888888898888899999999885 5656665 2234555665 544
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=61.97 E-value=15 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 108 EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 108 ~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
|.+|.++|.+++..++..+.++. .++-|+|++..|.-..
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EEE
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEEE
Confidence 34789999999999999988654 3689999999986543
No 56
>PRK09732 hypothetical protein; Provisional
Probab=59.30 E-value=27 Score=26.19 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 108 EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 108 ~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
+.||++.|.+++..|+..+.++ +..+.|+|+|..|.-
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l 41 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHL 41 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCE
Confidence 4689999999999999998764 458999999999843
No 57
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=52.49 E-value=42 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 107 KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 107 ~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
++.+|.+.|.+++..|+.++-+. +.++.|.|+|..|.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~ 41 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGH 41 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCC
Confidence 36789999999999999887643 57999999999984
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=51.89 E-value=12 Score=22.66 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred EEecChHHHHHHHHhhc-cCCCCHHHHHHHHHH
Q 029142 90 TMGSGSLAAMAMFESKY-KEGLTKDEGIQLVVD 121 (198)
Q Consensus 90 a~G~gs~~a~~~Le~~~-~~~ms~eeai~la~~ 121 (198)
+.|+....+...+.+.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 35777888888888777 889999987776654
No 59
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=45.36 E-value=1.1e+02 Score=25.86 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=41.3
Q ss_pred eEEEecChHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 88 FATMGSGSLAAMAMFESK----YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
..++|.|...++..+-.. .+.+++++||.+.+++-+..... ..+...-+..++++|..
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 568999998887666543 34689999999988877755332 23445677778888754
No 60
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=41.07 E-value=2.3e+02 Score=24.23 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred hhcCCCCCHHHHHHHHHHHHhccC------------CccceEEEEEEEeCCC-CEEEEECCCCceeecCeEEEecChHHH
Q 029142 32 YHTGRESRVVTALTLLKKHLFNYQ------------GYVQAALVLGGVDCTG-PHLHTIYPHGSTDTLPFATMGSGSLAA 98 (198)
Q Consensus 32 ~~~~~~i~v~~la~~l~~~l~~~~------------~p~gv~~ivaG~D~~g-p~Ly~idp~Gs~~~~~~~a~G~gs~~a 98 (198)
+-+|.+|....-+...-..+++.. .|-|..+...|.+... +..|.+ | ..+..-+|.|-.+.
T Consensus 157 iLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~i-p-----ki~~~FtGTGDLfs 230 (308)
T KOG2599|consen 157 ILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLI-P-----KIDGVFTGTGDLFS 230 (308)
T ss_pred hhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEe-c-----ccceEEecccHHHH
Confidence 346777777776766666666542 1334456666666544 333333 2 25677889999888
Q ss_pred HHHHHhhccC--CCCHHHHHHHHHHHHHHHHhc
Q 029142 99 MAMFESKYKE--GLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 99 ~~~Le~~~~~--~ms~eeai~la~~al~~~~~~ 129 (198)
-=+|.+.++. +-++..|++.++.++...+.+
T Consensus 231 aLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 231 ALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6677666554 378889999988888887764
No 61
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=40.94 E-value=53 Score=22.37 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccc
Q 029142 98 AMAMFESKYK----EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNH 153 (198)
Q Consensus 98 a~~~Le~~~~----~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~ 153 (198)
+.++++..+. ..+|.+||.+.|+++|..... ++.--+++++.+|....-|.
T Consensus 19 a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~hp~ 73 (95)
T PF08269_consen 19 AISLIESYYAQAQAGKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAHPS 73 (95)
T ss_dssp HHHHTHHHHHC-STT-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEESS
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEcCC
Confidence 4444444433 359999999999999987653 23446888899999887766
No 62
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=40.82 E-value=1.3e+02 Score=23.37 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=46.1
Q ss_pred CCEEEEECCCCceeecCeEEEe-cChHHHHHHHHhhcc--------------------CCCCHHHHHHHHHHHHHHHHhc
Q 029142 71 GPHLHTIYPHGSTDTLPFATMG-SGSLAAMAMFESKYK--------------------EGLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 71 gp~Ly~idp~Gs~~~~~~~a~G-~gs~~a~~~Le~~~~--------------------~~ms~eeai~la~~al~~~~~~ 129 (198)
+-.+..+.|-|.-........| ..+..+..++++.++ .++|++.|..+|.+-|..++..
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4567788899998888888888 666677777776543 2579999999999999877654
Q ss_pred c
Q 029142 130 D 130 (198)
Q Consensus 130 d 130 (198)
+
T Consensus 151 ~ 151 (158)
T PRK02260 151 N 151 (158)
T ss_pred C
Confidence 4
No 63
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=39.06 E-value=1.6e+02 Score=24.60 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=39.8
Q ss_pred CeEEEecChHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 87 PFATMGSGSLAAMAMFESK----YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
-..++|.|...++..|-.. .+.++++++|.+.+++-|... .+...-+..++++|..
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 3788999999887776644 356899999988777776542 1234557777888753
No 64
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=38.73 E-value=1.4e+02 Score=25.05 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=39.5
Q ss_pred CeEEEecChHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 87 PFATMGSGSLAAMAMFESK----YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
-..++|.|..+++..+-.. .+.+++++||.+.+++-+..-. +...-+..++++|.-
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~~ 237 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGEV 237 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCCE
Confidence 3778999998887766643 4568999999998887765432 234456667888743
No 65
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.51 E-value=83 Score=19.96 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.5
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccC
Q 029142 97 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDL 131 (198)
Q Consensus 97 ~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~ 131 (198)
.|..-+.+...++||--|||+++...|+.--.+|.
T Consensus 15 ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 15 KAVERIQELMAEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHHhcccc
Confidence 34445555666899999999999999998665553
No 66
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=38.05 E-value=47 Score=20.31 Aligned_cols=31 Identities=35% Similarity=0.450 Sum_probs=24.1
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhh
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESK 105 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~ 105 (198)
|.|+|+|.+...---..|+....+...||+.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHH
Confidence 6789999998876777788777777777754
No 67
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=35.56 E-value=1.3e+02 Score=22.94 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=40.3
Q ss_pred EEE-EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHH--HHHHHHH
Q 029142 73 HLH-TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLV--VDAICSG 126 (198)
Q Consensus 73 ~Ly-~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la--~~al~~~ 126 (198)
.|| .+| .|.+....|-..|-+...+-+-+=..+=.+.|.+||+++. ...+...
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 454 566 8888888999999888777666666677799999999999 4444443
No 68
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=35.55 E-value=77 Score=20.96 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=32.6
Q ss_pred EecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 029142 91 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFND 130 (198)
Q Consensus 91 ~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d 130 (198)
.|+....+..+++..|+-+.+....-.++..+|+.++.+.
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G 59 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKG 59 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCC
Confidence 4778889999999999767777667788899999888654
No 69
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=35.22 E-value=1.2e+02 Score=22.08 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=39.0
Q ss_pred EEECCC-CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 029142 75 HTIYPH-GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 128 (198)
Q Consensus 75 y~idp~-Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~ 128 (198)
..+|.. |.+....|.+.|-....+-.-+=-.+=.+.+++||.++..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 377887 888889999998776665444444444688999998887766666553
No 70
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=34.92 E-value=1.2e+02 Score=23.59 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=27.3
Q ss_pred HHHHHHHHHhccC-------Cc---c-ceEEEEEEEeCCCCEEEEECCCCce
Q 029142 43 ALTLLKKHLFNYQ-------GY---V-QAALVLGGVDCTGPHLHTIYPHGST 83 (198)
Q Consensus 43 la~~l~~~l~~~~-------~p---~-gv~~ivaG~D~~gp~Ly~idp~Gs~ 83 (198)
.+..++.+|.+|. .| + +=..||.|+|.+|-.|...||-+.-
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg~~i~~~DP~~gP 148 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDGDSIHVHDPEQGP 148 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCCCeEEecCcccCC
Confidence 3445556666662 23 2 3456778999988899999997643
No 71
>PRK02487 hypothetical protein; Provisional
Probab=33.95 E-value=1.2e+02 Score=23.33 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=29.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 106 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 106 ~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
-.+.+|.++|.+++..++..+..+ +.++.|+|++ +|.
T Consensus 19 ~~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~ 55 (163)
T PRK02487 19 VFPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQ 55 (163)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCc
Confidence 347899999999999999988754 3578898885 663
No 72
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=31.15 E-value=81 Score=22.40 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=26.5
Q ss_pred EecChHHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHH
Q 029142 91 MGSGSLAAMAMFESKY----KEGLTKDEGIQLVVDAICSGI 127 (198)
Q Consensus 91 ~G~gs~~a~~~Le~~~----~~~ms~eeai~la~~al~~~~ 127 (198)
+|++-.+..-+++... +.+++.++|.+++.+.+.-+.
T Consensus 13 sGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a 53 (107)
T PF14748_consen 13 SGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAA 53 (107)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5777766666666553 579999999999999987654
No 73
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=31.15 E-value=98 Score=22.19 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhhhcCC-CCCHHHHHH
Q 029142 17 EAVTDMVSSQLQLHRYHTGR-ESRVVTALT 45 (198)
Q Consensus 17 ~~l~~~l~~~~~~~~~~~~~-~i~v~~la~ 45 (198)
..+.+.+..+++.|++..++ +++.+.+.+
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~s 79 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDLKS 79 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHHh
Confidence 45778899999999999987 777766644
No 74
>PRK11325 scaffold protein; Provisional
Probab=30.71 E-value=1.5e+02 Score=21.81 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=36.6
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICS 125 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~ 125 (198)
.+|..|.+....|.+.|-....+-.-+=..+-.+.|++||..+....+..
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 66667888888999888776665544444555688999999887765544
No 75
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=30.36 E-value=80 Score=21.71 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Q 029142 109 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g 146 (198)
.+-.+|++++|..|+...-+ -.+-++++|.+...++
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q~--~L~lNGv~V~v~~~~~ 68 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQD--HLSLNGVEVQVERTQK 68 (82)
T ss_pred HHHHHHHHHHHHHHHHhCcc--eEEEcCeEEEEEEcCC
Confidence 34578999999999998753 3566889998887653
No 76
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=30.02 E-value=25 Score=29.88 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=41.7
Q ss_pred EEEeC-CC-CEEEEECCCCceeecCeEEEecC-hHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Q 029142 65 GGVDC-TG-PHLHTIYPHGSTDTLPFATMGSG-SLAAMAMFESKYKE-GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 140 (198)
Q Consensus 65 aG~D~-~g-p~Ly~idp~Gs~~~~~~~a~G~g-s~~a~~~Le~~~~~-~ms~eeai~la~~al~~~~~~d~~sg~~iei~ 140 (198)
.|+|+ +| +-.......|-+.+. ..|.. -....+-|-+.|++ ++|+|+|++|...=...+ .+..++..|.+.
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG--~hp~sge~I~ag 152 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIG--KHPDSGEEISAG 152 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCchhhC--CCCCCCcEEEec
Confidence 45664 44 344455555655543 45665 44555666677875 799999998875444333 344455566554
No 77
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=27.28 E-value=1.1e+02 Score=24.83 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=32.7
Q ss_pred EEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 029142 89 ATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 89 ~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~ 129 (198)
..+|.|..++-.++-... .+++.+||++.|..++..++++
T Consensus 203 ~~~GaGDaf~a~~~~~l~-~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 203 NNIGAGCTFASSIASQLV-KGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 358999988877777655 4789999999999999888864
No 78
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=26.90 E-value=88 Score=19.64 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 029142 108 EGLTKDEGIQLVVDAICSGIFND 130 (198)
Q Consensus 108 ~~ms~eeai~la~~al~~~~~~d 130 (198)
.+||.|+|.++.++.++..+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988777554
No 79
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=26.85 E-value=2.2e+02 Score=21.53 Aligned_cols=65 Identities=14% Similarity=0.287 Sum_probs=38.4
Q ss_pred CeEEEecChHHHHHHHHhhccCCC------------------CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 87 PFATMGSGSLAAMAMFESKYKEGL------------------TKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~~~~~~m------------------s~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
.-..+|.....+..+|=.+..+=. ++.+++..++++| +|...+ +--|..|-+.|.+
T Consensus 28 ~~v~l~~~~~~lL~~L~e~~geVvsk~eL~~~VW~~~~v~~~~Ltq~I~~LRr~L-----~d~~~~-~~~I~TvPrrGyk 101 (148)
T COG3710 28 EVVKLGPRELKLLSLLLERAGEVVSKDELLDAVWPGRIVTVNTLTQAISALRRAL-----RDIGDG-HRLIATVPRRGYK 101 (148)
T ss_pred eEEEecHHHHHHHHHHHhccCceecHHHHHHHhCCCceEccChHHHHHHHHHHHH-----hccCCc-ceEEEEeCCcceE
Confidence 566777766666655544433222 3444444444444 343333 3338888899999
Q ss_pred EeccccCCC
Q 029142 149 YLRNHLLPN 157 (198)
Q Consensus 149 ~~~~~~~~~ 157 (198)
+..++.+..
T Consensus 102 ~~~~v~~~~ 110 (148)
T COG3710 102 FTADVIIII 110 (148)
T ss_pred EecceEEec
Confidence 998887765
No 80
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=24.90 E-value=90 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=21.3
Q ss_pred eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 029142 88 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 122 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~a 122 (198)
+|..|.+...+....--.+..+++.++|++.++.+
T Consensus 84 HC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~ 118 (138)
T smart00195 84 HCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDR 118 (138)
T ss_pred ECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55666655544333322334578999999987643
No 81
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=24.74 E-value=81 Score=18.64 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q 029142 111 TKDEGIQLVVDAICSGI 127 (198)
Q Consensus 111 s~eeai~la~~al~~~~ 127 (198)
|.+||++.+++||...+
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 67788888888876544
No 82
>smart00463 SMR Small MutS-related domain.
Probab=24.72 E-value=2.1e+02 Score=18.70 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 109 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
+|+.+||+....+.|..+..+.. .-.+.||+-.|..
T Consensus 8 G~~~~eA~~~l~~~l~~~~~~~~----~~~~~II~G~G~~ 43 (80)
T smart00463 8 GLTVEEALTALDKFLNNARLKGL----EQKLVIITGKGKH 43 (80)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC----CceEEEEEcccCC
Confidence 78999999999999998775432 1457777766643
No 83
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=23.74 E-value=1.3e+02 Score=24.91 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=32.9
Q ss_pred EEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 029142 90 TMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFND 130 (198)
Q Consensus 90 a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d 130 (198)
.+|.|..++-.++-... .+.+.++|++.|..++..++.+-
T Consensus 218 ~~GaGD~f~A~~l~~l~-~g~~~~~al~~A~~~v~~~l~~t 257 (286)
T TIGR00687 218 PVGTGDLIAALLLATLL-HGNSLKEALEKTVSAVYHVLVTT 257 (286)
T ss_pred CCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 38999999888887655 47899999999999988877653
No 84
>PF09453 HIRA_B: HIRA B motif; InterPro: IPR019015 The HirA B (Histone regulatory homologue A binding) motif is the essential binding interface between IPR011494 from INTERPRO and ASF1a, of approx. 40 residues. It forms an antiparallel beta-hairpin that binds perpendicular to the strands of the beta-sandwich of ASF1a N-terminal core domain, via beta-sheet, salt bridge and van der Waals interactions []. The two histone chaperone proteins, HIRA and ASF1a, form a heterodimer with histones H3 and H4. HIRA is the human orthologue of Hir proteins known to silence histone gene expression and create transcriptionally silent heterochromatin in yeast, flies, plants and humans. The HIR complex is composed of HIR1, HIR2, HIR3 and HPC2, and interacts with ASF1. The HIR complex cooperates with ASF1 to promote replication-independent chromatin assembly. The HIR complex is also required for the periodic repression of three of the four histone gene loci during cell cycle as well as for autogenous regulation of the HTA1-HTB1 locus by H2A and H2B. DNA-binding by the HIR complex may repress transcription by inhibiting nucleosome remodeling by the SWI/SNF complex. The HIR complex may also be required for transcriptional silencing of centromeric, telomeric and mating-type loci in the absence of CAF-1. ; GO: 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0016568 chromatin modification, 0005634 nucleus; PDB: 2I32_E.
Probab=23.60 E-value=84 Score=16.42 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=10.1
Q ss_pred EEEEecCCeEEeccccCCC
Q 029142 139 VCVITKGHKEYLRNHLLPN 157 (198)
Q Consensus 139 i~ii~k~g~~~~~~~~~~~ 157 (198)
...++|+|.+.+.|.-++.
T Consensus 3 ~~t~~k~GKkRi~P~liss 21 (24)
T PF09453_consen 3 KETITKDGKKRIAPTLISS 21 (24)
T ss_dssp EEEE-TTS-EEEE-EE---
T ss_pred ceEeccCCceEeccEEeec
Confidence 3457899999998876643
No 85
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=23.42 E-value=1.2e+02 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhcCCCCCHHHHHHHHH
Q 029142 21 DMVSSQLQLHRYHTGRESRVVTALTLLK 48 (198)
Q Consensus 21 ~~l~~~~~~~~~~~~~~i~v~~la~~l~ 48 (198)
+.+++.........|+.|+.+.+|..+.
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 4455556666777899999999999764
No 86
>PRK12412 pyridoxal kinase; Reviewed
Probab=23.25 E-value=1.4e+02 Score=24.67 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.1
Q ss_pred EEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 029142 90 TMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 90 a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~ 129 (198)
.+|.|..++-.++-... .+++.+||++.|..++..++.+
T Consensus 208 t~GaGD~f~aa~aa~l~-~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 208 THGAGCTYSAAITAELA-KGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CCchHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Confidence 36999988877776544 5789999999999999988865
No 87
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=23.12 E-value=1.2e+02 Score=18.84 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC
Q 029142 110 LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 145 (198)
Q Consensus 110 ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~ 145 (198)
-|.+||++.|++-|..- -+.+++-|+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~-------~~~~~~eVi~~g 33 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVP-------REELEYEVIEEG 33 (52)
T ss_dssp SSHHHHHHHHHHHTT---------GGGEEEEEEE--
T ss_pred CCHHHHHHHHHHHhCCC-------hHHEEEEEEEcC
Confidence 47899999888887542 257889888874
No 88
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=22.67 E-value=54 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=15.5
Q ss_pred hccCCCCHHHHHHHHHHH
Q 029142 105 KYKEGLTKDEGIQLVVDA 122 (198)
Q Consensus 105 ~~~~~ms~eeai~la~~a 122 (198)
.|||++|.|+||+|.++.
T Consensus 214 WYKP~isREQAIalLrdk 231 (483)
T KOG1930|consen 214 WYKPNISREQAIALLRDK 231 (483)
T ss_pred ccCCCCCHHHHHHHhhcC
Confidence 468999999999988775
No 89
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.61 E-value=1.5e+02 Score=24.90 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=31.0
Q ss_pred EEEEeCCCCEEEEECCCCceee---cCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHH
Q 029142 64 LGGVDCTGPHLHTIYPHGSTDT---LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVD 121 (198)
Q Consensus 64 vaG~D~~gp~Ly~idp~Gs~~~---~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~ 121 (198)
+||-|. ....+|..|.... .+-||.|.|+.+ -.+... =+++++|.-+++.+
T Consensus 104 IGGQD~---K~I~~~~~G~v~~f~MNdkCAAGTG~FL-e~~A~~---L~i~leel~~~a~~ 157 (262)
T TIGR02261 104 IGALHG---RAIRMDERGKVEAYKMTSQCASGSGQFL-ENIARY---LGIAQDEIGSLSQQ 157 (262)
T ss_pred eCCCce---EEEEEcCCCcEeeEEecCcccccccHHH-HHHHHH---hCCCHHHHHHHHhc
Confidence 566663 5788899998765 478999998833 222221 14555555444433
No 90
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=22.37 E-value=1.5e+02 Score=23.61 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=32.2
Q ss_pred eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 029142 88 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 128 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~ 128 (198)
...+|.|..++-.++-... .+++.++|++.|...+..++.
T Consensus 201 ~~~~GaGD~f~a~l~a~l~-~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 201 KNTHGTGCTLSSAIAANLA-KGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred CCCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH
Confidence 4457999988877776654 488999999999999998875
No 91
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=22.16 E-value=1.5e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=33.3
Q ss_pred eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 029142 88 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~ 129 (198)
...+|.|..++-.++-... .+++.++|++.|...+..++.+
T Consensus 211 ~~~~GaGD~f~a~~~~~l~-~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 211 AYFNGTGDLFAALLLARLL-KGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred CCcCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999888777654 4789999999999998888753
No 92
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=21.93 E-value=4.2e+02 Score=22.06 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=36.3
Q ss_pred CeEEEecChHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 87 PFATMGSGSLAAMAMFESK----YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
-.+++|.|...++..+-.. .+.+++++||.+.+++-+... .+...=+-.+++ |.
T Consensus 174 avs~TG~GE~iir~~~A~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Iavd~-G~ 231 (246)
T cd04703 174 AVSATGAGEAIARNTLARSAYNRLGTGDPAQDAAKAAISRFSEA------TGVTAGVIAVDP-EE 231 (246)
T ss_pred eEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCceEEEEECC-Cc
Confidence 4569999999887766544 345799999988777766442 223445556677 54
No 93
>PRK07105 pyridoxamine kinase; Validated
Probab=21.92 E-value=1.6e+02 Score=24.41 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=33.1
Q ss_pred eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 029142 88 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~ 129 (198)
...+|.|..++-.++-... .+++.++|++.|..++..++.+
T Consensus 215 ~~~~GaGD~f~aa~~~~l~-~g~~l~~av~~A~~~~~~~i~~ 255 (284)
T PRK07105 215 AHYPGTGDIFTSVITGSLL-QGDSLPIALDRAVQFIEKGIRA 255 (284)
T ss_pred CCcCChhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHH
Confidence 4458999999888886554 4789999999999988887764
No 94
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.85 E-value=69 Score=29.09 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=43.4
Q ss_pred eEEEEEEEeCCCCEEEEECCCCcee---ecCeEEEecChHHHHHHHHhh---ccCCCCHHHHHHHHHHHHH
Q 029142 60 AALVLGGVDCTGPHLHTIYPHGSTD---TLPFATMGSGSLAAMAMFESK---YKEGLTKDEGIQLVVDAIC 124 (198)
Q Consensus 60 v~~ivaG~D~~gp~Ly~idp~Gs~~---~~~~~a~G~gs~~a~~~Le~~---~~~~ms~eeai~la~~al~ 124 (198)
+-+|+||.|..+. +++-..+. .....++|.....+...|++. +..--++++|++.+.....
T Consensus 346 v~lI~GG~~Kg~d----f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a~ 412 (448)
T COG0771 346 VILIAGGDDKGAD----FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELAQ 412 (448)
T ss_pred EEEEECCCCCCCC----hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhhc
Confidence 7788899886543 23333222 234889999998998999877 5666788998888776653
No 95
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=21.69 E-value=2.5e+02 Score=20.43 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=35.4
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICS 125 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~ 125 (198)
.++..|.+.+..|.+.|-....+-.-+=..+=.+.|++||..+.-+.+..
T Consensus 44 ~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~~~i~~ 93 (124)
T TIGR01999 44 KVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKNTEIAK 93 (124)
T ss_pred EECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccHHHHHH
Confidence 55666888888999888776665544434444688999999887765544
No 96
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=21.30 E-value=4.3e+02 Score=22.69 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=42.0
Q ss_pred EEEecChHHHHHHH---HhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEec
Q 029142 89 ATMGSGSLAAMAMF---ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLR 151 (198)
Q Consensus 89 ~a~G~gs~~a~~~L---e~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~ 151 (198)
+..||.+.....++ -+.|..+++.++-.+++-++-..+- ..++.+++.+++-+|.-..+
T Consensus 96 ~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vq----G~~Sg~D~a~~~~gg~v~~~ 157 (307)
T COG1577 96 AGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQ----GKASGIDIATITYGGLVAFK 157 (307)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc----CCCCcccceEEEeCCEEEEe
Confidence 34444444434443 4556789999999999999976654 45678999999999976554
No 97
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=21.18 E-value=84 Score=22.50 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.1
Q ss_pred CCCEEEEECCCCceee
Q 029142 70 TGPHLHTIYPHGSTDT 85 (198)
Q Consensus 70 ~gp~Ly~idp~Gs~~~ 85 (198)
++|+||++||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 5799999999986543
No 98
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.84 E-value=72 Score=22.29 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=10.4
Q ss_pred CCCEEEEECCCC
Q 029142 70 TGPHLHTIYPHG 81 (198)
Q Consensus 70 ~gp~Ly~idp~G 81 (198)
++|+|+.+||.-
T Consensus 24 d~PrL~yvdp~~ 35 (89)
T cd01262 24 NGPRLIYVDPVK 35 (89)
T ss_pred cCceEEEEcCCc
Confidence 589999999973
No 99
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=20.70 E-value=1.8e+02 Score=19.19 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Q 029142 109 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g 146 (198)
+|+.+||+..+.+.|..+..+.. -.+.||+-.|
T Consensus 5 G~~~~eA~~~l~~~l~~~~~~~~-----~~~~II~G~G 37 (83)
T PF01713_consen 5 GLTVEEALRALEEFLDEARQRGI-----RELRIITGKG 37 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHHHTTH-----SEEEEE--ST
T ss_pred CCcHHHHHHHHHHHHHHHHHcCC-----CEEEEEeccC
Confidence 68999999999999988775432 4566777555
No 100
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=20.54 E-value=3e+02 Score=23.39 Aligned_cols=48 Identities=27% Similarity=0.343 Sum_probs=29.3
Q ss_pred CEEE-EECC-CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHH
Q 029142 72 PHLH-TIYP-HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLV 119 (198)
Q Consensus 72 p~Ly-~idp-~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la 119 (198)
..|| .+|+ .|.+....|.+.|-+...|-+-+=..+-.+.|.+||.++.
T Consensus 39 i~l~l~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~Gktv~ea~~i~ 88 (290)
T TIGR02000 39 LRLMLKVDPESDKIVDAGFQTFGCGSAIASSSALTEMIKGLTLDEALKVS 88 (290)
T ss_pred EEEEEEEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHHhh
Confidence 3444 6776 7788888899888766555443333343466666655433
No 101
>PRK12616 pyridoxal kinase; Reviewed
Probab=20.53 E-value=1.6e+02 Score=24.22 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=31.6
Q ss_pred EEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 029142 90 TMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFN 129 (198)
Q Consensus 90 a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~ 129 (198)
.+|.|..++-.++-... .+++.++|++.|...+..++.+
T Consensus 211 t~GaGD~fsaalaa~l~-~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 211 THGAGCTFSAAVTAELA-KGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Confidence 37999988877776544 5789999999999998888865
No 102
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.43 E-value=1.5e+02 Score=23.41 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=28.2
Q ss_pred eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 029142 88 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 123 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al 123 (198)
-.+.|.....+...+++...++++.++.++.|++.|
T Consensus 150 L~~LGy~~~ea~~av~~~~~~~~~~e~lik~ALk~l 185 (188)
T PRK14606 150 LVSLGYPEKQAREAVKHVYREGMKTSELIKEALKFL 185 (188)
T ss_pred HHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 357788888888888887666888888877777766
Done!