Query 029142
Match_columns 198
No_of_seqs 173 out of 1238
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3unf_H Proteasome subunit beta 100.0 4.8E-50 1.6E-54 328.4 23.5 195 1-198 37-233 (234)
2 1iru_I 20S proteasome; cell cy 100.0 9.9E-48 3.4E-52 314.6 20.1 195 1-198 37-233 (234)
3 3nzj_H Proteasome component PU 100.0 8.1E-47 2.8E-51 313.6 23.2 187 1-188 66-254 (261)
4 1ryp_I 20S proteasome; multica 100.0 4.1E-46 1.4E-50 302.7 22.8 183 1-184 37-221 (222)
5 1iru_N 20S proteasome; cell cy 100.0 2.6E-38 8.8E-43 256.0 18.6 163 1-163 45-213 (219)
6 1j2q_H Proteasome beta subunit 100.0 3.2E-38 1.1E-42 252.5 18.4 155 1-155 37-193 (202)
7 1ryp_K 20S proteasome; multica 100.0 4.9E-38 1.7E-42 250.5 18.5 154 1-154 38-196 (198)
8 3h4p_a Proteasome subunit beta 100.0 4.7E-38 1.6E-42 254.8 16.5 155 1-155 38-195 (219)
9 1iru_L 20S proteasome; cell cy 100.0 1.3E-37 4.4E-42 249.3 18.7 155 1-155 37-192 (204)
10 1yar_H Proteasome beta subunit 100.0 2E-37 7E-42 250.6 18.1 154 1-155 45-200 (217)
11 1ryp_L 20S proteasome; multica 100.0 4.2E-37 1.4E-41 247.7 18.6 156 1-156 37-194 (212)
12 1iru_K 20S proteasome; cell cy 100.0 7.1E-37 2.4E-41 244.4 19.7 154 1-154 38-195 (201)
13 1ryp_N 20S proteasome; multica 100.0 2.5E-37 8.4E-42 252.6 17.1 162 1-162 45-222 (233)
14 1iru_H 20S proteasome; cell cy 100.0 5.3E-37 1.8E-41 245.9 18.7 155 1-155 37-194 (205)
15 1iru_B 20S proteasome; cell cy 100.0 1.4E-36 4.9E-41 248.0 18.3 154 1-155 67-225 (233)
16 1iru_M 20S proteasome; cell cy 100.0 3.6E-36 1.2E-40 242.4 19.8 150 1-150 46-206 (213)
17 1ryp_A 20S proteasome; multica 100.0 1.8E-36 6.1E-41 248.9 17.3 154 1-155 66-232 (243)
18 1ryp_M 20S proteasome; multica 100.0 6.5E-36 2.2E-40 242.6 20.2 150 1-150 46-215 (222)
19 3nzj_K Proteasome component PR 100.0 2.3E-36 7.9E-41 253.8 17.9 156 1-156 112-269 (287)
20 1yar_A Proteasome alpha subuni 100.0 2.7E-36 9.1E-41 246.4 17.7 152 1-153 70-227 (233)
21 1g0u_M Proteasome component PR 100.0 2.2E-36 7.4E-41 251.7 17.2 162 1-162 78-255 (266)
22 1iru_J 20S proteasome; cell cy 100.0 1.2E-35 4.2E-40 237.9 20.8 150 1-150 45-198 (205)
23 1ryp_H 20S proteasome; multica 100.0 4.1E-36 1.4E-40 240.8 18.0 150 1-151 46-196 (205)
24 3unf_N Proteasome subunit beta 100.0 1.1E-35 3.7E-40 237.1 18.4 156 1-158 37-196 (199)
25 1ryp_F 20S proteasome; multica 100.0 7.2E-36 2.5E-40 243.9 16.6 154 1-155 65-229 (233)
26 1ryp_J 20S proteasome; multica 100.0 4.1E-35 1.4E-39 234.7 20.5 149 1-150 45-197 (204)
27 1ryp_G 20S proteasome; multica 100.0 1.8E-35 6.2E-40 243.2 18.9 155 1-155 66-231 (244)
28 1iru_F 20S proteasome; cell cy 100.0 1.2E-35 4.2E-40 246.7 17.3 155 1-155 66-229 (263)
29 1iru_A 20S proteasome; cell cy 100.0 4E-35 1.4E-39 241.3 18.7 151 1-152 72-232 (246)
30 1ryp_C 20S proteasome; multica 100.0 5.7E-35 2E-39 240.0 19.2 147 1-147 68-222 (244)
31 1iru_C 20S proteasome; cell cy 100.0 4.7E-35 1.6E-39 242.9 18.3 146 1-146 68-220 (261)
32 1ryp_E 20S proteasome; multica 100.0 2.7E-35 9.3E-40 241.6 16.4 151 1-152 62-225 (242)
33 1iru_E 20S proteasome; cell cy 100.0 5.1E-35 1.7E-39 240.0 17.4 150 1-151 70-230 (241)
34 1iru_G 20S proteasome; cell cy 100.0 3.9E-35 1.3E-39 242.5 15.9 153 1-153 69-230 (254)
35 3mi0_A Proteasome subunit alph 100.0 1.3E-34 4.6E-39 238.5 18.7 145 1-146 56-217 (248)
36 3nzj_F Proteasome component C1 100.0 1.3E-34 4.5E-39 243.2 18.6 144 1-144 70-221 (288)
37 1q5q_H Proteasome beta-type su 100.0 1.8E-34 6.1E-39 236.0 18.6 155 1-155 37-210 (235)
38 1ryp_D 20S proteasome; multica 100.0 2E-34 6.8E-39 236.4 18.3 151 1-154 65-226 (241)
39 3h4p_A Proteasome subunit alph 100.0 7.3E-35 2.5E-39 242.2 15.4 153 1-155 74-233 (264)
40 1j2p_A Alpha-ring, proteasome 100.0 3.2E-34 1.1E-38 236.0 18.9 153 1-155 70-229 (246)
41 1iru_D 20S proteasome; cell cy 100.0 1E-34 3.5E-39 239.2 15.8 152 1-155 65-225 (248)
42 1q5q_A Proteasome alpha-type s 100.0 6.8E-34 2.3E-38 235.8 16.9 151 1-152 56-225 (259)
43 1q5r_H Proteasome beta-type su 100.0 2.1E-33 7.3E-38 236.5 17.6 155 1-155 102-275 (294)
44 1ryp_B 20S proteasome; multica 100.0 3.4E-33 1.2E-37 230.3 18.0 145 1-146 67-218 (250)
45 2jay_A Proteasome; hydrolase; 100.0 6E-33 2E-37 233.5 15.5 155 1-155 94-267 (291)
46 1g3k_A ATP-dependent protease 99.9 6.8E-27 2.3E-31 182.8 15.9 129 2-143 39-173 (174)
47 1m4y_A ATP-dependent protease 99.9 8.1E-27 2.8E-31 181.8 15.7 128 2-142 39-171 (171)
48 2z3b_A ATP-dependent protease 99.9 1.3E-26 4.6E-31 182.2 15.4 128 2-142 45-179 (180)
49 3fpw_A HBPS, extracellular HAE 47.8 34 0.0012 26.3 5.4 38 107-148 62-99 (192)
50 2a2l_A Unknown; structural gen 44.9 22 0.00077 25.8 3.8 37 108-148 10-46 (145)
51 3ub6_A Chemoreceptor TLPB; hom 38.7 63 0.0022 24.0 5.6 52 97-153 35-86 (181)
52 1apy_B Aspartylglucosaminidase 34.2 82 0.0028 22.8 5.4 57 87-148 48-108 (141)
53 1p4k_A N(4)-(beta-N-acetylgluc 30.2 1.4E+02 0.0048 24.3 6.7 62 87-148 199-266 (295)
54 2q8v_A NBLA protein; phycobili 26.8 55 0.0019 20.4 2.9 22 109-130 29-50 (63)
55 1ojh_A NBLA; degradation prote 26.4 57 0.0019 20.5 2.9 23 108-130 23-45 (65)
56 3lvl_A NIFU-like protein; prot 25.3 92 0.0032 21.9 4.3 51 73-123 43-94 (129)
57 4gdv_A L-asparaginase; NTN enz 25.2 2.3E+02 0.0077 23.2 7.2 62 80-147 207-275 (310)
58 3fau_A NEDD4-binding protein 2 24.4 57 0.0019 20.8 2.8 39 109-147 7-45 (82)
59 2d9i_A NEDD4-binding protein 2 24.2 76 0.0026 20.9 3.5 39 109-147 15-53 (96)
60 2kxe_A DNA polymerase II small 22.9 81 0.0028 19.9 3.1 25 97-121 21-46 (75)
61 3a1q_C Ubiquitin interaction m 22.8 62 0.0021 18.3 2.3 15 108-122 2-16 (45)
62 2gdt_A Leader protein; P65 hom 22.7 61 0.0021 22.4 2.7 18 109-126 21-38 (116)
63 3s4o_A Protein tyrosine phosph 22.4 73 0.0025 22.4 3.3 35 88-122 115-149 (167)
64 4gof_A Small glutamine-rich te 22.3 96 0.0033 18.5 3.2 35 97-131 8-45 (52)
65 4asv_A Small glutamine-rich te 21.5 1.2E+02 0.0042 20.3 4.0 34 97-130 25-61 (92)
66 3emu_A Leucine rich repeat and 21.4 79 0.0027 22.7 3.4 33 88-122 93-127 (161)
67 1ixs_A Holliday junction DNA h 21.3 68 0.0023 19.7 2.5 31 90-120 26-58 (62)
68 2z7e_A ISCU protein, NIFU-like 20.5 1.6E+02 0.0055 21.5 4.9 55 72-126 40-96 (157)
69 2lxb_A Small glutamine-rich te 20.3 1.4E+02 0.0049 19.1 4.0 34 97-130 13-49 (74)
No 1
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4.8e-50 Score=328.38 Aligned_cols=195 Identities=47% Similarity=0.783 Sum_probs=178.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.+++++++++++|++||++++||||+|++||+||++||+
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~ 116 (234)
T 3unf_H 37 IAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPH 116 (234)
T ss_dssp EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTT
T ss_pred ecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccCCCccc
Q 029142 81 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRT 160 (198)
Q Consensus 81 Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~~~~~~ 160 (198)
|++.+++|+|+|+|+..++++||+.|+++||++||++++++||..++.||..++++++|++|+++|+++++|++++++|.
T Consensus 117 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~ 196 (234)
T 3unf_H 117 GSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPV 196 (234)
T ss_dssp SCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCC
T ss_pred CCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCc-cceeeeeEeEecc-ceeeeeecCCCCCC
Q 029142 161 FVNAKGYSFPK-KTEVLLTKITPLR-ERVEVVEGGDAMEE 198 (198)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 198 (198)
.|...|+||+ ||+||+++|+|+. |.+++++ |+||+
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 233 (234)
T 3unf_H 197 -QRAGRYRFAPGTTPVLTREVRPLTLELLEETV--QAMEV 233 (234)
T ss_dssp -CCCCCCCCCTTCSCEEEEEEEEC----------------
T ss_pred -cccccccCCCCCcceeeEEEEEeeEEEEEeee--eeccC
Confidence 6999999999 9999999999997 6666666 89986
No 2
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=9.9e-48 Score=314.64 Aligned_cols=195 Identities=57% Similarity=0.945 Sum_probs=178.7
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++++++||++++||||+|.+||+||.+||+
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~ 116 (234)
T 1iru_I 37 ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPH 116 (234)
T ss_dssp EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTT
T ss_pred ecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccCCCccc
Q 029142 81 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRT 160 (198)
Q Consensus 81 Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~~~~~~ 160 (198)
|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..++.+|..++++++|++|+++|++.++|+..+++|.
T Consensus 117 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~ 196 (234)
T 1iru_I 117 GSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKG 196 (234)
T ss_dssp SCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCC
T ss_pred CCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCc-cceeeeeEeEecc-ceeeeeecCCCCCC
Q 029142 161 FVNAKGYSFPK-KTEVLLTKITPLR-ERVEVVEGGDAMEE 198 (198)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 198 (198)
.|..+|+||+ ||++|+++|.++. +.++... ++||+
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 233 (234)
T 1iru_I 197 -TRLGRYRCEKGTTAVLTEKITPLEIEVLEETV--QTMDT 233 (234)
T ss_dssp -CCCSCCCCCTTCSCBSCCCCCBCC---------------
T ss_pred -ccccCcccCCCceeeeEEEEEecchhheeccc--ccccC
Confidence 5899999999 9999999999997 4444333 67885
No 3
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=8.1e-47 Score=313.65 Aligned_cols=187 Identities=56% Similarity=0.868 Sum_probs=179.7
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
|++||+||+||..||++.+.++++.+++.|++.+++++++..+++++++++++|++||++++||||+|++||+||++||+
T Consensus 66 I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~ 145 (261)
T 3nzj_H 66 ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAH 145 (261)
T ss_dssp EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTT
T ss_pred EcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEEeccccCCCcc
Q 029142 81 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLLPNPR 159 (198)
Q Consensus 81 Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~~~~~~~~~~~ 159 (198)
|++.+++++|+|+|+..++++||+.|+++||+|||++++++||..+++||..++++++|++|+++| .++++||..+++|
T Consensus 146 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~ 225 (261)
T 3nzj_H 146 GSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 225 (261)
T ss_dssp SCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCC
T ss_pred ccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cccCCCCCCCCc-cceeeeeEeEeccceee
Q 029142 160 TFVNAKGYSFPK-KTEVLLTKITPLRERVE 188 (198)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 188 (198)
.+ |...|+||+ +|+||+++|+++.+.++
T Consensus 226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (261)
T 3nzj_H 226 EE-KQKSYKFPRGTTAVLKESIVNICDIQE 254 (261)
T ss_dssp CC-CSSCCCCCTTCSCEEEEEEECCCC---
T ss_pred cc-cccccCCCCCCcceeeEEEEEeeeeeE
Confidence 94 999999999 99999999999984444
No 4
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=4.1e-46 Score=302.72 Aligned_cols=183 Identities=56% Similarity=0.886 Sum_probs=178.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeCCCCEEEEECCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPH 80 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~~gp~Ly~idp~ 80 (198)
|++||+||+||..||++.+.++++.+++.|+++++++++++.++++++++++++++||++++|+||+|.+||+||.+||+
T Consensus 37 i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~ 116 (222)
T 1ryp_I 37 ISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAH 116 (222)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTT
T ss_pred ecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred CceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEEeccccCCCcc
Q 029142 81 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLLPNPR 159 (198)
Q Consensus 81 Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~~~~~~~~~~~ 159 (198)
|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+++||..++++++|++|+++| ++.++|+..+++|
T Consensus 117 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~ 196 (222)
T 1ryp_I 117 GSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196 (222)
T ss_dssp SCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCC
T ss_pred CCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cccCCCCCCCCc-cceeeeeEeEecc
Q 029142 160 TFVNAKGYSFPK-KTEVLLTKITPLR 184 (198)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (198)
. .|..+|.||+ ||++++++|++++
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (222)
T 1ryp_I 197 E-EKQKSYKFPRGTTAVLKESIVNIC 221 (222)
T ss_dssp C-CCSSCCCCCTTCSCEEEEEECCCC
T ss_pred c-ccccCcccCCCceeeeeeeeEecc
Confidence 9 4789999999 9999999998874
No 5
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.6e-38 Score=256.01 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=156.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhh-hcCCCCCHHHHHHHHHHHHhcc---CCccceEEEEEEEeCCCCEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY-HTGRESRVVTALTLLKKHLFNY---QGYVQAALVLGGVDCTGPHLHT 76 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-~~~~~i~v~~la~~l~~~l~~~---~~p~gv~~ivaG~D~~gp~Ly~ 76 (198)
|++|++||+||..||++.+.++++.+++.|++ .++++++++.+++++++++|.+ .+||++++||||+|+.||+||.
T Consensus 45 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~ 124 (219)
T 1iru_N 45 VNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGY 124 (219)
T ss_dssp ETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEE
Confidence 58999999999999999999999999999998 9999999999999999998765 3699999999999988899999
Q ss_pred ECCCCceeecCeEEEecChHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEecccc
Q 029142 77 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKE--GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 154 (198)
Q Consensus 77 idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~--~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~ 154 (198)
+||+|++.+++++|+|+|+..++++||+.|++ +||.+||++++++||..+.+||..++++++|++|+++|++.++|.+
T Consensus 125 id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~ 204 (219)
T 1iru_N 125 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLS 204 (219)
T ss_dssp ECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEEC
T ss_pred ECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCee
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcccccC
Q 029142 155 LPNPRTFVN 163 (198)
Q Consensus 155 ~~~~~~~~~ 163 (198)
++..|.|++
T Consensus 205 i~~~~~~~~ 213 (219)
T 1iru_N 205 TETNWDIAH 213 (219)
T ss_dssp CCCCCGGGG
T ss_pred ccchhhHHH
Confidence 999998743
No 6
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.2e-38 Score=252.46 Aligned_cols=155 Identities=26% Similarity=0.370 Sum_probs=148.2
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|++|++||+||..||++.+.++++.+++.|+++++++++++.++++++++++.++ +||++++|+||+|++||+||.+||
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~ 116 (202)
T 1j2q_H 37 IADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDP 116 (202)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECT
T ss_pred cCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECC
Confidence 5789999999999999999999999999999999999999999999999998875 699999999999998899999999
Q ss_pred CCceeecC-eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 80 HGSTDTLP-FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 80 ~Gs~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
+|++.+++ ++|+|+|+.+++++||+.|+++||.+||++++++||..+++||..++++++|++|+++|++.+.+.++
T Consensus 117 ~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei 193 (202)
T 1j2q_H 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEV 193 (202)
T ss_dssp TCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHH
T ss_pred CCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHH
Confidence 99999999 99999999999999999999999999999999999999999999899999999999999988776544
No 7
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.9e-38 Score=250.54 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=147.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeC--CCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDC--TGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~--~gp~Ly 75 (198)
|++|++|++||..||++.+.++++.+++.|+++++++++++.+++++++.+++++ +||++++|+||+|+ +||+||
T Consensus 38 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly 117 (198)
T 1ryp_K 38 LSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELY 117 (198)
T ss_dssp EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEE
T ss_pred eCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEE
Confidence 5799999999999999999999999999999999999999999999999998763 59999999999996 679999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEecccc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 154 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~ 154 (198)
.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++.++|++
T Consensus 118 ~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 118 QIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp EECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred EECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998864
No 8
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.7e-38 Score=254.79 Aligned_cols=155 Identities=26% Similarity=0.426 Sum_probs=148.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeC-CCCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDC-TGPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~-~gp~Ly~id 78 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.+++++++++++++ +||++++||||+|+ +||+||++|
T Consensus 38 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~id 117 (219)
T 3h4p_a 38 IDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLD 117 (219)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEEC
T ss_pred ecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEEC
Confidence 5799999999999999999999999999999999999999999999999998874 69999999999998 789999999
Q ss_pred CCCceeecC-eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 79 PHGSTDTLP-FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 79 p~Gs~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
|+|++.+++ ++|+|+|+..++++||+.|+++||++||++++++||..+++||..++++++|++|+++|++.+.+-++
T Consensus 118 p~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei 195 (219)
T 3h4p_a 118 PLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEI 195 (219)
T ss_dssp SSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHH
T ss_pred CCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999998876544
No 9
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.3e-37 Score=249.30 Aligned_cols=155 Identities=21% Similarity=0.277 Sum_probs=148.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.++ .|+++++|+||+|++||+||++||
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp 116 (204)
T 1iru_L 37 INPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDS 116 (204)
T ss_dssp EETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEES
T ss_pred cCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECC
Confidence 5799999999999999999999999999999999999999999999999999886 489999999999998999999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+++||..++++++|++|+++|++.+.+.++
T Consensus 117 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei 192 (204)
T 1iru_L 117 EGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNV 192 (204)
T ss_dssp SSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEH
T ss_pred CCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHH
Confidence 9999999999999999999999999999999999999999999999999999899999999999999988876544
No 10
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2e-37 Score=250.65 Aligned_cols=154 Identities=29% Similarity=0.401 Sum_probs=147.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
|+++++||+||..||++.+.++++.+++.|++.++++++++.++++++++++.++ +||++++|+||+| +||+||.+||
T Consensus 45 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp 123 (217)
T 1yar_H 45 IDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDA 123 (217)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECT
T ss_pred eCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECC
Confidence 5789999999999999999999999999999999999999999999999998875 6999999999999 8999999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEec-CCeEEeccccC
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKEYLRNHLL 155 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k-~g~~~~~~~~~ 155 (198)
+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+++||..++++++|++|++ +|++.+.+.++
T Consensus 124 ~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei 200 (217)
T 1yar_H 124 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQI 200 (217)
T ss_dssp TCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHH
T ss_pred CCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHH
Confidence 99999999999999999999999999999999999999999999999999998999999999999 88887765544
No 11
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=4.2e-37 Score=247.73 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=148.8
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCC-ccceEEEEEEEe-CCCCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVD-CTGPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~-p~gv~~ivaG~D-~~gp~Ly~id 78 (198)
|++|++||+||..||++.+.++++.+++.|++.++++++++.++++++++++.++. ||++++|+||+| ..||+||.+|
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~id 116 (212)
T 1ryp_L 37 INPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD 116 (212)
T ss_dssp EETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEE
T ss_pred eCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEc
Confidence 57899999999999999999999999999999999999999999999999998854 899999999999 4689999999
Q ss_pred CCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccCC
Q 029142 79 PHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLP 156 (198)
Q Consensus 79 p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~~ 156 (198)
|+|++.+++++|+|+|+.+++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++.+.+.+++
T Consensus 117 p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~ 194 (212)
T 1ryp_L 117 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVG 194 (212)
T ss_dssp TTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHH
T ss_pred CCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776553
No 12
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=7.1e-37 Score=244.44 Aligned_cols=154 Identities=20% Similarity=0.272 Sum_probs=145.7
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH-hc--cCCccceEEEEEEEeC-CCCEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-FN--YQGYVQAALVLGGVDC-TGPHLHT 76 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l-~~--~~~p~gv~~ivaG~D~-~gp~Ly~ 76 (198)
|++|++||+||..||++.+.++++.+++.|++.++++++++.+++++++.+ +. .++||++++|+||+|+ .||+||.
T Consensus 38 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~ 117 (201)
T 1iru_K 38 MSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYY 117 (201)
T ss_dssp CSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEE
T ss_pred ecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEE
Confidence 689999999999999999999999999999999999999999999998765 43 2369999999999997 6799999
Q ss_pred ECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEecccc
Q 029142 77 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 154 (198)
Q Consensus 77 idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~ 154 (198)
+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++++||..+.+||..++.+++|++|+++|++.++++.
T Consensus 118 id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~ 195 (201)
T 1iru_K 118 MDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNIS 195 (201)
T ss_dssp ECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBC
T ss_pred ECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888764
No 13
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.5e-37 Score=252.59 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=154.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhh-----hcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeCC-C
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY-----HTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCT-G 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-----~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~~-g 71 (198)
|++||+||+||..||++.+.++++.+++.|++ .++++++++.+++++++++|.++ +||++++||||+|.+ |
T Consensus 45 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~g 124 (233)
T 1ryp_N 45 VGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 124 (233)
T ss_dssp ETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSC
T ss_pred eCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCC
Confidence 57999999999999999999999999999999 89999999999999999998664 699999999999985 8
Q ss_pred CEEEEECCCCceeecCeEEEecChHHHHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC-
Q 029142 72 PHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE-----GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG- 145 (198)
Q Consensus 72 p~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~-----~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~- 145 (198)
|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||++||++++++||..+++||..++++++|++|+++
T Consensus 125 p~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~ 204 (233)
T 1ryp_N 125 QFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT 204 (233)
T ss_dssp EEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT
T ss_pred EEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCC
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CeEEeccccCCCc-cccc
Q 029142 146 HKEYLRNHLLPNP-RTFV 162 (198)
Q Consensus 146 g~~~~~~~~~~~~-~~~~ 162 (198)
|++.+++.++... |.|+
T Consensus 205 g~~~~~~~~i~~~~w~~~ 222 (233)
T 1ryp_N 205 GLTFKKNLQVENMKWDFA 222 (233)
T ss_dssp EEEEEEEEECCSCCCGGG
T ss_pred CeEEcChHhcccccchhh
Confidence 9999999999888 8764
No 14
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.3e-37 Score=245.87 Aligned_cols=155 Identities=30% Similarity=0.468 Sum_probs=146.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeC-CCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~-~gp~Ly~idp 79 (198)
|++|++||+||..||++.+.++++.+++.|++.++++++++.++++++++++.++.||++++|+||+|+ .||+||.+||
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~ 116 (205)
T 1iru_H 37 IHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116 (205)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECT
T ss_pred cCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECC
Confidence 579999999999999999999999999999999999999999999999999999889999999999998 6799999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE--EeccccC
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE--YLRNHLL 155 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~--~~~~~~~ 155 (198)
+|++.+++++++|+|+..++++||+.|+++||.+||++++++||..+++||..++++++|++|+++|.+ .+.+-++
T Consensus 117 ~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei 194 (205)
T 1iru_H 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQI 194 (205)
T ss_dssp TSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGS
T ss_pred CCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999974 3444443
No 15
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.4e-36 Score=247.99 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=146.2
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++|++||+||..||++.+.++++.+++.|+++++++++++.++++++++++.| .+||++++||||+|.+||+||
T Consensus 67 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly 146 (233)
T 1iru_B 67 ITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 146 (233)
T ss_dssp SSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEE
T ss_pred ECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEE
Confidence 689999999999999999999999999999999999999999999999998654 359999999999998899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccC
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 155 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~ 155 (198)
.+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+++|| .++++++|++|+++|++.+.+.++
T Consensus 147 ~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei 225 (233)
T 1iru_B 147 QSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEV 225 (233)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHH
T ss_pred EECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 679999999999999888876544
No 16
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3.6e-36 Score=242.37 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=143.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCC-CEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTG-PHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~g-p~Ly~id 78 (198)
|+++|+||+||..||++.+.++++.+++.|++.++++++++.+++++++++|.++ +||++++||||+|.+| |+||.+|
T Consensus 46 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id 125 (213)
T 1iru_M 46 LTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 125 (213)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEEC
T ss_pred cCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999997654 7999999999999765 9999999
Q ss_pred CCCceeecCeEEEecChHHHHHHHHhh---------ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEE
Q 029142 79 PHGSTDTLPFATMGSGSLAAMAMFESK---------YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 149 (198)
Q Consensus 79 p~Gs~~~~~~~a~G~gs~~a~~~Le~~---------~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~ 149 (198)
|+|++.+++++|+|+|+.+++++||+. |+++||++||++++++||..+.++|..++++++|++|+++|++.
T Consensus 126 ~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 205 (213)
T 1iru_M 126 PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIRE 205 (213)
T ss_dssp TTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEE
T ss_pred CCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEE
Confidence 999999999999999999999999999 88999999999999999999999999999999999999999875
Q ss_pred e
Q 029142 150 L 150 (198)
Q Consensus 150 ~ 150 (198)
.
T Consensus 206 ~ 206 (213)
T 1iru_M 206 E 206 (213)
T ss_dssp E
T ss_pred E
Confidence 4
No 17
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.8e-36 Score=248.92 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=144.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHH--hc-c--CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL--FN-Y--QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l--~~-~--~~p~gv~~ivaG~D~-~gp~L 74 (198)
|++||+|++||..||++.+.++++.+++.|++.++++++++.+++++++++ |. + .+||++++||||||+ .||+|
T Consensus 66 i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~L 145 (243)
T 1ryp_A 66 ISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSI 145 (243)
T ss_dssp CSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEE
T ss_pred ECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEE
Confidence 689999999999999999999999999999999999999999999999998 43 2 469999999999997 78999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccC-------CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE-------GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~-------~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
|++||+|++.+++++|+|+|+..++++||+.|++ +||++||++++++||..+++|| .++++++|++|+++|+
T Consensus 146 y~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~ 224 (243)
T 1ryp_A 146 YKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKF 224 (243)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEE
T ss_pred EEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCe
Confidence 9999999999999999999999999999999999 9999999999999999999999 6899999999999997
Q ss_pred EEeccccC
Q 029142 148 EYLRNHLL 155 (198)
Q Consensus 148 ~~~~~~~~ 155 (198)
+.+.+.++
T Consensus 225 ~~l~~~ei 232 (243)
T 1ryp_A 225 FTLSAENI 232 (243)
T ss_dssp EECCHHHH
T ss_pred EECCHHHH
Confidence 77765443
No 18
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.5e-36 Score=242.60 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=143.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcC-CCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeCCC-CEEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTG-PHLHTI 77 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~~g-p~Ly~i 77 (198)
|+++++|++||..||++.+.++++.+++.|++.++ ++++++.+++++++++|.++ +||++++||||+|.+| |+||++
T Consensus 46 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~ 125 (222)
T 1ryp_M 46 CGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125 (222)
T ss_dssp EETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEE
T ss_pred eCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEE
Confidence 57899999999999999999999999999999999 99999999999999998764 6999999999999765 999999
Q ss_pred CCCCceeecCeEEEecChHHHHHHHHhh-----------------ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Q 029142 78 YPHGSTDTLPFATMGSGSLAAMAMFESK-----------------YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 140 (198)
Q Consensus 78 dp~Gs~~~~~~~a~G~gs~~a~~~Le~~-----------------~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ 140 (198)
||+|++.+++++|+|+|+.+++++||+. |+++||++||++++++||..+.+||..++++++|+
T Consensus 126 dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~ 205 (222)
T 1ryp_M 126 DPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEIL 205 (222)
T ss_dssp CTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEE
T ss_pred CCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 9999999999999999999999999998 88999999999999999999999999999999999
Q ss_pred EEecCCeEEe
Q 029142 141 VITKGHKEYL 150 (198)
Q Consensus 141 ii~k~g~~~~ 150 (198)
+|+++|++..
T Consensus 206 vi~~~g~~~~ 215 (222)
T 1ryp_M 206 IVTKDGVRKE 215 (222)
T ss_dssp EEETTEEEEE
T ss_pred EEcCCCeEEE
Confidence 9999998754
No 19
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.3e-36 Score=253.77 Aligned_cols=156 Identities=23% Similarity=0.308 Sum_probs=149.8
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeC-CCCEEEEEC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDC-TGPHLHTIY 78 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~-~gp~Ly~id 78 (198)
|+++|+||+||..||++.+.++++.+++.|++.++++++++.+++++++++|.++ .||++++||||||+ .||+||++|
T Consensus 112 I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iD 191 (287)
T 3nzj_K 112 INPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD 191 (287)
T ss_dssp EETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEE
T ss_pred EcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999886 49999999999994 779999999
Q ss_pred CCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccccCC
Q 029142 79 PHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLP 156 (198)
Q Consensus 79 p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~~~~ 156 (198)
|+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+++||..+|++++|++|+++|++.+.+.++.
T Consensus 192 p~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~ 269 (287)
T 3nzj_K 192 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVG 269 (287)
T ss_dssp TTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHH
T ss_pred CCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887764
No 20
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.7e-36 Score=246.37 Aligned_cols=152 Identities=20% Similarity=0.335 Sum_probs=143.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+|++||..||++.+.++++.+++.|+++++++++++.++++++++++.+ .+||++++||||+|++||+||
T Consensus 70 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly 149 (233)
T 1yar_A 70 IDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLF 149 (233)
T ss_dssp EETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEE
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEE
Confidence 579999999999999999999999999999999999999999999999999755 359999999999999899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEEeccc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNH 153 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~~~~~ 153 (198)
.+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.++|. ++++++|++|+++| .+.+.+.
T Consensus 150 ~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ 227 (233)
T 1yar_A 150 DCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQE 227 (233)
T ss_dssp EECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHH
T ss_pred EECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHH
Confidence 99999999999999999999999999999999999999999999999999999997 79999999999998 6665543
No 21
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.2e-36 Score=251.65 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=155.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhh-----hcCCCCCHHHHHHHHHHHHhccC---CccceEEEEEEEeCC-C
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY-----HTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCT-G 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-----~~~~~i~v~~la~~l~~~l~~~~---~p~gv~~ivaG~D~~-g 71 (198)
|+++|+||+||..||++.+.++++.+++.|++ .++++++++.+++++++++|.++ +||++++||||+|.+ |
T Consensus 78 i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~g 157 (266)
T 1g0u_M 78 VGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 157 (266)
T ss_dssp CTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSC
T ss_pred cCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCC
Confidence 68999999999999999999999999999998 89999999999999999998764 699999999999985 8
Q ss_pred CEEEEECCCCceeecCeEEEecChHHHHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC-
Q 029142 72 PHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE-----GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG- 145 (198)
Q Consensus 72 p~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~-----~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~- 145 (198)
|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||++||++++++||..+++||..++++++|++|+++
T Consensus 158 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~ 237 (266)
T 1g0u_M 158 QFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT 237 (266)
T ss_dssp EEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT
T ss_pred EEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCC
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CeEEeccccCCCc-cccc
Q 029142 146 HKEYLRNHLLPNP-RTFV 162 (198)
Q Consensus 146 g~~~~~~~~~~~~-~~~~ 162 (198)
|++.+++.++... |.|+
T Consensus 238 g~~~~~~~ei~~~~w~~~ 255 (266)
T 1g0u_M 238 GLTFKKNLQVENMKWDFA 255 (266)
T ss_dssp EEEEEEEEECCCCCCGGG
T ss_pred CeEEcCHHHhhhhhhhHH
Confidence 9999999999888 8763
No 22
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.2e-35 Score=237.94 Aligned_cols=150 Identities=22% Similarity=0.297 Sum_probs=142.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeC--CCCEEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDC--TGPHLHTI 77 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~--~gp~Ly~i 77 (198)
|++|++||+||..||++.+.++++.+++.|++.++++++++.+++++++++|.++ +||++++|+||+|+ +||+||.+
T Consensus 45 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~i 124 (205)
T 1iru_J 45 MGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124 (205)
T ss_dssp CSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEE
T ss_pred eCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEE
Confidence 6899999999999999999999999999999999999999999999999998664 59999999999995 67999999
Q ss_pred CCCCceeec-CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 78 YPHGSTDTL-PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 78 dp~Gs~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
||+|++.++ +|+|+|+|+.+++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|++..
T Consensus 125 dp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 198 (205)
T 1iru_J 125 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTR 198 (205)
T ss_dssp CTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEE
T ss_pred CCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEE
Confidence 999999665 6799999999999999999999999999999999999999999999999999999999998753
No 23
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4.1e-36 Score=240.78 Aligned_cols=150 Identities=28% Similarity=0.468 Sum_probs=144.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeC-CCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~-~gp~Ly~idp 79 (198)
|++|++||+||..||++.+.++++.+++.|++.+++ ++++.++++++++++.++..|++++|+||+|+ .||+||.+||
T Consensus 46 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~ 124 (205)
T 1ryp_H 46 VHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPL 124 (205)
T ss_dssp EETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECT
T ss_pred cCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECC
Confidence 578999999999999999999999999999999999 99999999999999988766999999999997 6799999999
Q ss_pred CCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEec
Q 029142 80 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLR 151 (198)
Q Consensus 80 ~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~ 151 (198)
+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+++||..++++++|++|+++|++...
T Consensus 125 ~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~ 196 (205)
T 1ryp_H 125 GGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196 (205)
T ss_dssp TSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred CccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999987543
No 24
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.1e-35 Score=237.12 Aligned_cols=156 Identities=28% Similarity=0.415 Sum_probs=144.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccCCccceEEEEEEEeC-CCCEEEEECC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYP 79 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~~p~gv~~ivaG~D~-~gp~Ly~idp 79 (198)
|++|++||+||..||++.+.++++.+++.|++.++++++++.++++++++++++++||++++||||+|+ .||+||+ |
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p 114 (199)
T 3unf_N 37 LHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--T 114 (199)
T ss_dssp EETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--C
T ss_pred cCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--E
Confidence 578999999999999999999999999999999999999999999999999999999999999999998 5799999 9
Q ss_pred CCceeec-CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE--EeccccCC
Q 029142 80 HGSTDTL-PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE--YLRNHLLP 156 (198)
Q Consensus 80 ~Gs~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~--~~~~~~~~ 156 (198)
+|++..+ +++++|+|+.+++++||+.|+++||++||++++++||..+++||..++++++|++|+++|++ .+.+-+++
T Consensus 115 ~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~ 194 (199)
T 3unf_N 115 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELP 194 (199)
T ss_dssp GGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSC
T ss_pred CCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCc
Confidence 9997665 56677999999999999999999999999999999999999999999999999999999954 46666655
Q ss_pred Cc
Q 029142 157 NP 158 (198)
Q Consensus 157 ~~ 158 (198)
.-
T Consensus 195 ~~ 196 (199)
T 3unf_N 195 KF 196 (199)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 25
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=7.2e-36 Score=243.90 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=144.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||+|++||+||
T Consensus 65 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly 144 (233)
T 1ryp_F 65 CDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLL 144 (233)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEE
T ss_pred EcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEE
Confidence 579999999999999999999999999999999999999999999999998543 469999999999999899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccC--CC--CHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEecC-CeEE
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE--GL--TKDEGIQLVVDAICSGIFND-LGSGSNVDVCVITKG-HKEY 149 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~--~m--s~eeai~la~~al~~~~~~d-~~sg~~iei~ii~k~-g~~~ 149 (198)
++||+|++.+++++|+|+|+..++++||+.|++ +| |++||++++++||..++ || ..++++++|++|+++ |++.
T Consensus 145 ~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~ 223 (233)
T 1ryp_F 145 EFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTI 223 (233)
T ss_dssp EECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEE
T ss_pred EECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEE
Confidence 999999999999999999999999999999999 99 99999999999999999 77 678999999999999 6887
Q ss_pred eccccC
Q 029142 150 LRNHLL 155 (198)
Q Consensus 150 ~~~~~~ 155 (198)
+.+.++
T Consensus 224 l~~~ei 229 (233)
T 1ryp_F 224 YDGEAV 229 (233)
T ss_dssp EEGGGG
T ss_pred CCHHHH
Confidence 776554
No 26
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=4.1e-35 Score=234.71 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=140.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-CccceEEEEEEEeC--CCCEEEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDC--TGPHLHTI 77 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-~p~gv~~ivaG~D~--~gp~Ly~i 77 (198)
|+ |++|++||..||++.+.++++.+++.|+++++++++++.+++++++++|.++ +||++++|+||+|+ +||+||.+
T Consensus 45 i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~i 123 (204)
T 1ryp_J 45 YG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123 (204)
T ss_dssp ET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEE
T ss_pred eC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEE
Confidence 57 9999999999999999999999999999999999999999999999997654 59999999999996 67999999
Q ss_pred CCCCceeec-CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEe
Q 029142 78 YPHGSTDTL-PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 150 (198)
Q Consensus 78 dp~Gs~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~ 150 (198)
||+|++.++ +|+|+|+|+.+++++||+.|+++||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 124 dp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 197 (204)
T 1ryp_J 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKR 197 (204)
T ss_dssp CTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEE
T ss_pred CCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEE
Confidence 999999665 6799999999999999999999999999999999999999999999999999999999998753
No 27
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.8e-35 Score=243.20 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=146.2
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||+|.+||+||
T Consensus 66 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly 145 (244)
T 1ryp_G 66 VDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLY 145 (244)
T ss_dssp ETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEE
T ss_pred ecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEE
Confidence 579999999999999999999999999999999999999999999999998554 369999999999998899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEec---CCeEE
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESK---YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK---GHKEY 149 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~---~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k---~g~~~ 149 (198)
.+||+|++.+++++|+|+|+..++++||+. |+++||.+||++++++||..+.++|..++.+++|++|++ +|.+.
T Consensus 146 ~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~ 225 (244)
T 1ryp_G 146 MLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK 225 (244)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEE
T ss_pred EECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeee
Confidence 999999999999999999999999999997 999999999999999999999999998999999999998 88887
Q ss_pred eccccC
Q 029142 150 LRNHLL 155 (198)
Q Consensus 150 ~~~~~~ 155 (198)
+.|.++
T Consensus 226 ~~~~~~ 231 (244)
T 1ryp_G 226 FVKGDL 231 (244)
T ss_dssp ECCTHH
T ss_pred eChHHH
Confidence 766543
No 28
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.2e-35 Score=246.72 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=146.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||||.+||+||
T Consensus 66 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly 145 (263)
T 1iru_F 66 VDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIF 145 (263)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEE
T ss_pred EcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEE
Confidence 579999999999999999999999999999999999999999999999998743 469999999999999889999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEecC-CeEEec
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE--GLTKDEGIQLVVDAICSGIFND-LGSGSNVDVCVITKG-HKEYLR 151 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~--~ms~eeai~la~~al~~~~~~d-~~sg~~iei~ii~k~-g~~~~~ 151 (198)
++||+|++.+++++|+|+|+..++++||+.|++ +||++||++++++||..+++|| ..++++++|++|+++ +++.+.
T Consensus 146 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~ 225 (263)
T 1iru_F 146 QTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYD 225 (263)
T ss_dssp EECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEEC
T ss_pred EECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECC
Confidence 999999999999999999999999999999998 9999999999999999999999 578999999999999 678777
Q ss_pred cccC
Q 029142 152 NHLL 155 (198)
Q Consensus 152 ~~~~ 155 (198)
+.++
T Consensus 226 ~~ei 229 (263)
T 1iru_F 226 DDDV 229 (263)
T ss_dssp SGGG
T ss_pred HHHH
Confidence 6655
No 29
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=4e-35 Score=241.27 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=141.4
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHh---cc--CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLF---NY--QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~---~~--~~p~gv~~ivaG~D~-~gp~L 74 (198)
|++|++||+||..||++.+.++++.+++.|++.++++++++.++++++++++ ++ .+||++++||||+|+ .||+|
T Consensus 72 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~L 151 (246)
T 1iru_A 72 ITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQV 151 (246)
T ss_dssp SSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEE
T ss_pred ECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEE
Confidence 6899999999999999999999999999999999999999999999998853 23 469999999999997 78999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe--EEe
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE--GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK--EYL 150 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~--~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~--~~~ 150 (198)
|++||+|++.+++++|+|+|+..++++||+.|++ +||++||++++++||..+++|| .++++++|++|+++|. +.+
T Consensus 152 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l 230 (246)
T 1iru_A 152 YKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRIL 230 (246)
T ss_dssp EEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEEC
T ss_pred EEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEEC
Confidence 9999999999999999999999999999999999 9999999999999999999999 7899999999999996 444
Q ss_pred cc
Q 029142 151 RN 152 (198)
Q Consensus 151 ~~ 152 (198)
.+
T Consensus 231 ~~ 232 (246)
T 1iru_A 231 TE 232 (246)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 30
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5.7e-35 Score=239.99 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=139.3
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEe-CCCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVD-CTGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D-~~gp~L 74 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||+| ..||+|
T Consensus 68 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~L 147 (244)
T 1ryp_C 68 LNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQL 147 (244)
T ss_dssp SSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEE
T ss_pred ECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEE
Confidence 689999999999999999999999999999999999999999999999998644 36999999999999 678999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEe--cCCe
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT--KGHK 147 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~--k~g~ 147 (198)
|.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+++||..++++++|++|+ ++|.
T Consensus 148 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~ 222 (244)
T 1ryp_C 148 YTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG 222 (244)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred EEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence 999999999999999999999999999999999999999999999999999999955679999999999 9874
No 31
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.7e-35 Score=242.93 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=140.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeC-CCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDC-TGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~-~gp~L 74 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.+ .+||++++||||+|. .||+|
T Consensus 68 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~L 147 (261)
T 1iru_C 68 LNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQL 147 (261)
T ss_dssp CSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEE
T ss_pred ecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEE
Confidence 689999999999999999999999999999999999999999999999999765 359999999999996 77999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKE-GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~-~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g 146 (198)
|.+||+|++.+++++|+|+|+.+++++||+.|++ +||.+||++++++||..++++|..++++++|++|+++|
T Consensus 148 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~ 220 (261)
T 1iru_C 148 YQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTREN 220 (261)
T ss_dssp EEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCS
T ss_pred EEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCC
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999997
No 32
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.7e-35 Score=241.65 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=141.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----------CCccceEEEEEEEe-
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----------QGYVQAALVLGGVD- 68 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----------~~p~gv~~ivaG~D- 68 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||+|
T Consensus 62 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~ 141 (242)
T 1ryp_E 62 IDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA 141 (242)
T ss_dssp EETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET
T ss_pred EcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC
Confidence 579999999999999999999999999999999999999999999999988764 56999999999999
Q ss_pred CCCCEEEEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe-
Q 029142 69 CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK- 147 (198)
Q Consensus 69 ~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~- 147 (198)
.+||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+++| ..++.+++|++|+++|.
T Consensus 142 ~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~ 220 (242)
T 1ryp_E 142 DDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGF 220 (242)
T ss_dssp TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEE
T ss_pred CCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCe
Confidence 5789999999999999999999999999999999999999999999999999999999998 56899999999999985
Q ss_pred EEecc
Q 029142 148 EYLRN 152 (198)
Q Consensus 148 ~~~~~ 152 (198)
+.+.+
T Consensus 221 ~~~~~ 225 (242)
T 1ryp_E 221 KIYDN 225 (242)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 55443
No 33
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=5.1e-35 Score=239.96 Aligned_cols=150 Identities=20% Similarity=0.320 Sum_probs=141.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc----------CCccceEEEEEEEeCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY----------QGYVQAALVLGGVDCT 70 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~----------~~p~gv~~ivaG~D~~ 70 (198)
|++|++||+||..||++.+.++++.+++.|+++++++++++.++++++++++.| .+||++++||||+|.+
T Consensus 70 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~ 149 (241)
T 1iru_E 70 IDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK 149 (241)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETT
T ss_pred EcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCC
Confidence 578999999999999999999999999999999999999999999999998554 4599999999999987
Q ss_pred CCEEEEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe-EE
Q 029142 71 GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK-EY 149 (198)
Q Consensus 71 gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~-~~ 149 (198)
||+||.+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.+| ..++++++|++|+++|. +.
T Consensus 150 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~ 228 (241)
T 1iru_E 150 GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHM 228 (241)
T ss_dssp EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEE
T ss_pred CCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEE
Confidence 89999999999999999999999999999999999999999999999999999999998 67899999999999985 44
Q ss_pred ec
Q 029142 150 LR 151 (198)
Q Consensus 150 ~~ 151 (198)
+.
T Consensus 229 l~ 230 (241)
T 1iru_E 229 FT 230 (241)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 34
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.9e-35 Score=242.50 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=142.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC-----CccceEEEEEEEe-CCCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVD-CTGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~-----~p~gv~~ivaG~D-~~gp~L 74 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.|+ +||++++|||||| ..||+|
T Consensus 69 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~L 148 (254)
T 1iru_G 69 VDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQL 148 (254)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEE
T ss_pred ECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEE
Confidence 5799999999999999999999999999999999999999999999999997663 6999999999999 678999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecC--C-eEEec
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG--H-KEYLR 151 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~--g-~~~~~ 151 (198)
|++||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..++++|..++.+++|++|+++ | .+++.
T Consensus 149 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~ 228 (254)
T 1iru_G 149 YMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 228 (254)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECC
T ss_pred EEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECC
Confidence 99999999999999999999999999999999999999999999999999999888778889999999987 5 66555
Q ss_pred cc
Q 029142 152 NH 153 (198)
Q Consensus 152 ~~ 153 (198)
+-
T Consensus 229 ~~ 230 (254)
T 1iru_G 229 KD 230 (254)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.3e-34 Score=238.55 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=132.1
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcC-CCCCHHHHHHHHHHHH----hccCCccceEEEEEEEeC----CC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKKHL----FNYQGYVQAALVLGGVDC----TG 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~i~v~~la~~l~~~l----~~~~~p~gv~~ivaG~D~----~g 71 (198)
|++||+||+||+.+|++.+.+.++..++.|++.++ .+++++.+++++++.+ ++..+||+|++||||||+ .|
T Consensus 56 I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~g 135 (248)
T 3mi0_A 56 LYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKR 135 (248)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCC
T ss_pred ECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCC
Confidence 68999999999999999999999999999999999 9999999999999543 344679999999999998 78
Q ss_pred CEEEEECCCCceee-cCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-------hccCCCCCcEEEEEEe
Q 029142 72 PHLHTIYPHGSTDT-LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI-------FNDLGSGSNVDVCVIT 143 (198)
Q Consensus 72 p~Ly~idp~Gs~~~-~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~-------~~d~~sg~~iei~ii~ 143 (198)
|+||++||+|++.. ++++|+|+|+..++++||++|+++||++||++++++||..++ +++ .++++++|+||+
T Consensus 136 p~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~ 214 (248)
T 3mi0_A 136 PELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLD 214 (248)
T ss_dssp CEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEE
T ss_pred CEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEE
Confidence 99999999999995 999999999999999999999999999999999999999999 565 578999999999
Q ss_pred cCC
Q 029142 144 KGH 146 (198)
Q Consensus 144 k~g 146 (198)
++|
T Consensus 215 ~~g 217 (248)
T 3mi0_A 215 ANR 217 (248)
T ss_dssp TTS
T ss_pred CCC
Confidence 998
No 36
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.3e-34 Score=243.23 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=139.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+||+||+.||++.++++++.+++.|++.+++++++..++++++++++.| .+||+|++||||||.+||+||
T Consensus 70 I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly 149 (288)
T 3nzj_F 70 VDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLY 149 (288)
T ss_dssp ETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEE
T ss_pred EcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEE
Confidence 589999999999999999999999999999999999999999999999998765 359999999999999899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEec
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESK---YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 144 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~---~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k 144 (198)
++||+|++.+++++|+|+|++.++++||+. |+++||++||++++++||..++++|..++..++|+||++
T Consensus 150 ~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 150 MLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred EECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 999999999999999999999999999999 999999999999999999999999988889999999999
No 37
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.8e-34 Score=236.01 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=143.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc----CCccceEEEEEEEeCC-C----
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY----QGYVQAALVLGGVDCT-G---- 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~----~~p~gv~~ivaG~D~~-g---- 71 (198)
|+++++||+||..||++.+.++++.+++.|++.++++++++.+++.++++++.+ .+||++++||||+|.+ |
T Consensus 37 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~ 116 (235)
T 1q5q_H 37 TDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESR 116 (235)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTS
T ss_pred eCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCC
Confidence 578999999999999999999999999999999999999999999999998764 4799999999999985 7
Q ss_pred -CEEEEECCCCceeec--CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCc--E-----EEEE
Q 029142 72 -PHLHTIYPHGSTDTL--PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN--V-----DVCV 141 (198)
Q Consensus 72 -p~Ly~idp~Gs~~~~--~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~--i-----ei~i 141 (198)
|+||++||+|++.++ +++|+|+|+.+++++||+.|+++||++||++++++||..++++|..+++. + +|++
T Consensus 117 ~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~v 196 (235)
T 1q5q_H 117 AGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVT 196 (235)
T ss_dssp CEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEE
T ss_pred CCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEE
Confidence 999999999999999 99999999999999999999999999999999999999999999887752 3 9999
Q ss_pred EecCCeEEeccccC
Q 029142 142 ITKGHKEYLRNHLL 155 (198)
Q Consensus 142 i~k~g~~~~~~~~~ 155 (198)
|+++|++.+.+.++
T Consensus 197 i~~~g~~~l~~~ei 210 (235)
T 1q5q_H 197 ITQAGAVHVSEETT 210 (235)
T ss_dssp EETTEEEECCHHHH
T ss_pred EeCCCeEEeCHHHH
Confidence 99999888765443
No 38
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2e-34 Score=236.45 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=141.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeC--CCCE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDC--TGPH 73 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~--~gp~ 73 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.+ .+||++++||||+|. .||+
T Consensus 65 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~ 144 (241)
T 1ryp_D 65 IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 144 (241)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCE
T ss_pred ecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCee
Confidence 579999999999999999999999999999999999999999999999999865 259999999999998 7899
Q ss_pred EEEECCCCceeecCeEEEecChHHHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEE
Q 029142 74 LHTIYPHGSTDTLPFATMGSGSLAAMAMFESKY---KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEY 149 (198)
Q Consensus 74 Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~---~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~ 149 (198)
||++||+|++.+++++|+|+|+..++++||+.| +++||++||++++++||..+++ .++++++|++|+++| .+.
T Consensus 145 Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~ 221 (241)
T 1ryp_D 145 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVA 221 (241)
T ss_dssp EEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEE
T ss_pred EEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEE
Confidence 999999999999999999999999999999999 9999999999999999999985 689999999999986 666
Q ss_pred ecccc
Q 029142 150 LRNHL 154 (198)
Q Consensus 150 ~~~~~ 154 (198)
+.+.+
T Consensus 222 l~~~e 226 (241)
T 1ryp_D 222 LSSEE 226 (241)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 65443
No 39
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.3e-35 Score=242.20 Aligned_cols=153 Identities=22% Similarity=0.338 Sum_probs=141.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+||+||..||++.++++++.+++.|++.++++++++.++++++++++.| .+||+|++||||+|..||+||
T Consensus 74 i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly 153 (264)
T 3h4p_A 74 IDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLF 153 (264)
T ss_dssp EETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEE
T ss_pred ecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEE
Confidence 579999999999999999999999999999999999999999999999998654 259999999999999899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC--eEEeccc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH--KEYLRNH 153 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g--~~~~~~~ 153 (198)
++||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..++++ .++++++|++|++++ ++.+.+-
T Consensus 154 ~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ 231 (264)
T 3h4p_A 154 ETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVE 231 (264)
T ss_dssp EECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTT
T ss_pred EECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHH
Confidence 999999999999999999999999999999999999999999999999999976 689999999999864 5555544
Q ss_pred cC
Q 029142 154 LL 155 (198)
Q Consensus 154 ~~ 155 (198)
++
T Consensus 232 ei 233 (264)
T 3h4p_A 232 EI 233 (264)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 40
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.2e-34 Score=235.96 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=142.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeCCCCEEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLH 75 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~~gp~Ly 75 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||+| +||+||
T Consensus 70 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly 148 (246)
T 1j2p_A 70 IDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLY 148 (246)
T ss_dssp CSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEE
T ss_pred ECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEE
Confidence 689999999999999999999999999999999999999999999999998654 34999999999999 899999
Q ss_pred EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEe-c-CCeEEeccc
Q 029142 76 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT-K-GHKEYLRNH 153 (198)
Q Consensus 76 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~-k-~g~~~~~~~ 153 (198)
.+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+.++ ..++++++|++|+ + +|++.+.+.
T Consensus 149 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ 227 (246)
T 1j2p_A 149 ETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPE 227 (246)
T ss_dssp EECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHH
T ss_pred EECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHH
Confidence 999999999999999999999999999999999999999999999999999988 7789999999999 6 477777655
Q ss_pred cC
Q 029142 154 LL 155 (198)
Q Consensus 154 ~~ 155 (198)
++
T Consensus 228 ei 229 (246)
T 1j2p_A 228 EL 229 (246)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 41
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1e-34 Score=239.16 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=141.8
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEe-CCCCEE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVD-CTGPHL 74 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D-~~gp~L 74 (198)
|++||+||+||..||++.+.++++.+++.|++.++++++++.++++++++++.| .+||++++||||+| ..||+|
T Consensus 65 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~L 144 (248)
T 1iru_D 65 LDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 144 (248)
T ss_dssp SSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEE
T ss_pred EcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEE
Confidence 689999999999999999999999999999999999999999999999998665 35999999999999 678999
Q ss_pred EEECCCCceeecCeEEEecChHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC-eEEec
Q 029142 75 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL--TKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLR 151 (198)
Q Consensus 75 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~m--s~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g-~~~~~ 151 (198)
|.+||+|++.+++++|+|+|+..++++||+.|+++| |++||++++++||..+++ .++++++|++|+++| ++.+.
T Consensus 145 y~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~ 221 (248)
T 1iru_D 145 YQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILN 221 (248)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCC
T ss_pred EEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECC
Confidence 999999999999999999999999999999999999 999999999999999886 478999999999998 77665
Q ss_pred cccC
Q 029142 152 NHLL 155 (198)
Q Consensus 152 ~~~~ 155 (198)
+.++
T Consensus 222 ~~ei 225 (248)
T 1iru_D 222 PEEI 225 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 42
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=6.8e-34 Score=235.76 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=136.6
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcC-CCCCHHHHHHHHHHHH---hcc-CCccceEEEEEEEe----CCC
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKKHL---FNY-QGYVQAALVLGGVD----CTG 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~i~v~~la~~l~~~l---~~~-~~p~gv~~ivaG~D----~~g 71 (198)
|++||+||+||..||++.+.++++.+++.|++.++ ++++++.+++++++++ |.+ .+||+|++|||||| ..|
T Consensus 56 I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~g 135 (259)
T 1q5q_A 56 LYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKA 135 (259)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCC
T ss_pred eCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCC
Confidence 57999999999999999999999999999999988 5999999999999953 333 47999999999999 678
Q ss_pred CEEEEECCCCcee-ecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-----hccCCCCCcEEEEEEecC
Q 029142 72 PHLHTIYPHGSTD-TLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI-----FNDLGSGSNVDVCVITKG 145 (198)
Q Consensus 72 p~Ly~idp~Gs~~-~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~-----~~d~~sg~~iei~ii~k~ 145 (198)
|+||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||..++ +||. ++.+++|++|+++
T Consensus 136 p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~ 214 (259)
T 1q5q_A 136 PQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQS 214 (259)
T ss_dssp CEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETT
T ss_pred CEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECC
Confidence 9999999999999 7899999999999999999999999999999999999999999 8998 9999999999999
Q ss_pred ----CeEEecc
Q 029142 146 ----HKEYLRN 152 (198)
Q Consensus 146 ----g~~~~~~ 152 (198)
+++.+.+
T Consensus 215 ~~~~~~~~l~~ 225 (259)
T 1q5q_A 215 RPRRAFRRIAG 225 (259)
T ss_dssp SSSCCEEECCH
T ss_pred CCcCCeEECCH
Confidence 5665543
No 43
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.1e-33 Score=236.46 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=143.9
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc----CCccceEEEEEEEeCC-C----
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY----QGYVQAALVLGGVDCT-G---- 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~----~~p~gv~~ivaG~D~~-g---- 71 (198)
|+++|+|++||..+|++.++++++.+++.|++.++++++++.++++|+++++++ .+||++++||||||.+ |
T Consensus 102 I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~ 181 (294)
T 1q5r_H 102 TDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESR 181 (294)
T ss_dssp EETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTS
T ss_pred ECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCC
Confidence 579999999999999999999999999999999999999999999999998764 4799999999999985 6
Q ss_pred -CEEEEECCCCceeec--CeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCc--E-----EEEE
Q 029142 72 -PHLHTIYPHGSTDTL--PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN--V-----DVCV 141 (198)
Q Consensus 72 -p~Ly~idp~Gs~~~~--~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~--i-----ei~i 141 (198)
|+||++||+|++.++ +|+|+|+|+.+++++||+.|+++||++||++++++||..++++|..+|+. + +|++
T Consensus 182 ~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~v 261 (294)
T 1q5r_H 182 AGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVT 261 (294)
T ss_dssp CEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEE
T ss_pred CCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEE
Confidence 899999999999999 89999999999999999999999999999999999999999999887653 6 9999
Q ss_pred EecCCeEEeccccC
Q 029142 142 ITKGHKEYLRNHLL 155 (198)
Q Consensus 142 i~k~g~~~~~~~~~ 155 (198)
|+++|++.+.+.++
T Consensus 262 I~~~g~~~l~~~ei 275 (294)
T 1q5r_H 262 ITQAGAVHVSEETT 275 (294)
T ss_dssp EETTEEEECCHHHH
T ss_pred EECCCEEEcCHHHH
Confidence 99999888765433
No 44
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=3.4e-33 Score=230.29 Aligned_cols=145 Identities=17% Similarity=0.287 Sum_probs=135.5
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHh-hhhhcCCCCCHHHHHHHHHHHHhcc-----CCccceEEEEEEEeC-CCCE
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQL-HRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDC-TGPH 73 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~-~~~~~~~~i~v~~la~~l~~~l~~~-----~~p~gv~~ivaG~D~-~gp~ 73 (198)
|++||+||+||..||++.+.++++.+++. |++.++.+++++.+++.+++++..+ .+||++++||||+|. .||+
T Consensus 67 i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~ 146 (250)
T 1ryp_B 67 LTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFS 146 (250)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEE
T ss_pred ECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcE
Confidence 57899999999999999999999999999 9999999999999988888876433 269999999999997 5799
Q ss_pred EEEECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Q 029142 74 LHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 146 (198)
Q Consensus 74 Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g 146 (198)
||.+||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||..+++++. ++++++|++|+++|
T Consensus 147 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 147 LYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp EEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred EEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 9999999999999999999999999999999999999999999999999999998865 89999999999986
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=6e-33 Score=233.50 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=135.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC----CccceEEEEEEEeCC-C----
Q 029142 1 MAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ----GYVQAALVLGGVDCT-G---- 71 (198)
Q Consensus 1 I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~----~p~gv~~ivaG~D~~-g---- 71 (198)
|++|++||+||..||++.+.++++.+++.|++.++.+++++.+++.+++++++++ +||+|++||||+|.+ +
T Consensus 94 i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~ 173 (291)
T 2jay_A 94 TDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQS 173 (291)
T ss_dssp EETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTT
T ss_pred eCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCC
Confidence 5789999999999999999999999999999999999999999999999998873 489999999999985 4
Q ss_pred -CEEEEECCCCcee--ecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCc--E-----EEEE
Q 029142 72 -PHLHTIYPHGSTD--TLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN--V-----DVCV 141 (198)
Q Consensus 72 -p~Ly~idp~Gs~~--~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~--i-----ei~i 141 (198)
|+||++||+|++. +++|+|+|+|+.+++++||+.|+++||.+||++++++||..++++|..+++. + +|++
T Consensus 174 ~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~v 253 (291)
T 2jay_A 174 AGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVI 253 (291)
T ss_dssp CEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEE
T ss_pred CCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEE
Confidence 8999999999988 8999999999999999999999999999999999999999999999887653 2 6999
Q ss_pred EecCCeEEeccccC
Q 029142 142 ITKGHKEYLRNHLL 155 (198)
Q Consensus 142 i~k~g~~~~~~~~~ 155 (198)
|+++|++.+.+.++
T Consensus 254 i~~dg~~~l~~~ei 267 (291)
T 2jay_A 254 IDADGAVDVPESRI 267 (291)
T ss_dssp EETTEEEECCHHHH
T ss_pred EECCCeEEcCHHHH
Confidence 99999888765544
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.95 E-value=6.8e-27 Score=182.79 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=116.5
Q ss_pred CCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC--CccceEEEEEEEeCCCCEEEEECC
Q 029142 2 APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ--GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 2 ~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~--~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
++|++||+||..||++.+.++++.+++.|++ +....+..+++.+++++ +|++ ++++|+| ||+||++||
T Consensus 39 ~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~ 108 (174)
T 1g3k_A 39 NGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITG 108 (174)
T ss_dssp TTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEET
T ss_pred CCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcC
Confidence 8999999999999999999999999999986 45667778888887764 3654 6777887 899999999
Q ss_pred CCceeecC---eEEEecChHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEe
Q 029142 80 HGSTDTLP---FATMGSGSLAAMAMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 143 (198)
Q Consensus 80 ~Gs~~~~~---~~a~G~gs~~a~~~Le~~~~-~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~ 143 (198)
+|++.+++ ++|+|+|+++++++||+.|+ ++||.+ +++++||+.+.+||..++++++|++|+
T Consensus 109 ~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 109 IGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp TTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 99999988 99999999999999999999 999955 799999999999999999999999986
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.95 E-value=8.1e-27 Score=181.81 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=114.5
Q ss_pred CCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhccC--CccceEEEEEEEeCCCCEEEEECC
Q 029142 2 APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ--GYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 2 ~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~~--~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
++|++||+||..||++.+.++++.+++.|+++ .++.++++. +.+++++ +||++++|+| | ||+||++||
T Consensus 39 ~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l~-~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~ 108 (171)
T 1m4y_A 39 EGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVELA-KDWRTDRVLRRLEALLLVA--D--KENIFIISG 108 (171)
T ss_dssp TTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHH-HHHHHCTTGGGCCCEEEEE--C--SSCEEEECT
T ss_pred CCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHH-HHHHHhCCCCceEEEEEEE--c--CCEEEEECC
Confidence 89999999999999999999999999999865 266666654 4666553 4799999998 6 899999999
Q ss_pred CCceeecC--eEEEecChHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 80 HGSTDTLP--FATMGSGSLAAMAMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 80 ~Gs~~~~~--~~a~G~gs~~a~~~Le~~~~-~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
+|++.+++ +.|+|+|+++++++||+.|+ ++||. ++++++||+.+.+||..++++++|+++
T Consensus 109 ~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 109 NGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp TSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred CCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 99999987 99999999999999999999 99997 678999999999999999999999864
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.94 E-value=1.3e-26 Score=182.19 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=114.3
Q ss_pred CCcEEEEecCchHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHhcc--CCccceEEEEEEEeCCCCEEEEECC
Q 029142 2 APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY--QGYVQAALVLGGVDCTGPHLHTIYP 79 (198)
Q Consensus 2 ~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~--~~p~gv~~ivaG~D~~gp~Ly~idp 79 (198)
++|++||+||..||++.+.++++.+++.|+ + +.++.+ ..+++.++++ .+||++++|+| +||+||++||
T Consensus 45 ~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~-~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~ 114 (180)
T 2z3b_A 45 NGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAA-VELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSG 114 (180)
T ss_dssp TTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHH-HHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECT
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHH-HHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECC
Confidence 899999999999999999999999999998 3 334333 3467777654 46999999999 4799999999
Q ss_pred CCceee--cCeEEEecChHHHHHHHHhhccC---CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEE
Q 029142 80 HGSTDT--LPFATMGSGSLAAMAMFESKYKE---GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 142 (198)
Q Consensus 80 ~Gs~~~--~~~~a~G~gs~~a~~~Le~~~~~---~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii 142 (198)
+|++.+ ++++|+|+|+.+|+++||+.|++ +||.|| ++++||+.+.+||..+|++++|++|
T Consensus 115 ~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 115 TGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp TCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999998 59999999999999999999998 999999 5789999999999999999999998
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=47.83 E-value=34 Score=26.27 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 107 KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 107 ~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
.+.+|.++|.+++..++..+.++. -.+.|.|+|..|.-
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~l 99 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNT 99 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCE
Confidence 367999999999999999988764 47999999998853
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=44.94 E-value=22 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 108 EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 108 ~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
+.+|.++|.+++..++..+.++. -.+.|.|++..|.-
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~g----~~v~IaVvD~~G~l 46 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEIN----VAVVFSVVDRGGNT 46 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCE
T ss_pred cCCCHHHHHHHHHHHHHHHHHcC----CCEEEEEEECCCCE
Confidence 45899999999999999987653 48999999988853
No 51
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=38.72 E-value=63 Score=23.97 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeEEeccc
Q 029142 97 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNH 153 (198)
Q Consensus 97 ~a~~~Le~~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~~~~~~ 153 (198)
.+.++++..+. .++.+||.+.+++.|+.....+ ++--+.+++.+|.-..-|.
T Consensus 35 ~a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g~~l~hP~ 86 (181)
T 3ub6_A 35 ILEQGIHEYYK-SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNGVVLFDPV 86 (181)
T ss_dssp HHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTCBEEECTT
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCCCEEEeCC
Confidence 45566666555 4899999999999998765422 2235788899998777664
No 52
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=34.21 E-value=82 Score=22.84 Aligned_cols=57 Identities=14% Similarity=0.023 Sum_probs=36.5
Q ss_pred CeEEEecChHHHHHHHHh----hccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCeE
Q 029142 87 PFATMGSGSLAAMAMFES----KYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 148 (198)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~----~~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~~ 148 (198)
-..++|.|...++..+-. +.+.+++++||.+-+++-+.... ....--+..++++|..
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~-----~~~~ggvIa~d~~G~~ 108 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHF-----PEFFGAVICANVTGSY 108 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTSCE
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CCCcEEEEEEeCCCCE
Confidence 367899998775444433 23478999999887775554422 1123356677888854
No 53
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=30.23 E-value=1.4e+02 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=39.7
Q ss_pred CeEEEecChHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHhccCC--CCCcEEEEEEecCCeE
Q 029142 87 PFATMGSGSLAAMAMFESK----YKEGLTKDEGIQLVVDAICSGIFNDLG--SGSNVDVCVITKGHKE 148 (198)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~--sg~~iei~ii~k~g~~ 148 (198)
-..++|.|..+++..+-.. .+.++++++|.+-+++-+...+.+... .+...=+-.++++|..
T Consensus 199 avs~TG~GE~iir~~~A~~i~~~m~~G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~gG~Iavd~~G~~ 266 (295)
T 1p4k_A 199 AATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEY 266 (295)
T ss_dssp EEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSCE
T ss_pred EEEeecccHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCceEEEEEEcCCCCE
Confidence 3778999998876655533 347899999999888776654321101 1123444557888854
No 54
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=26.82 E-value=55 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc
Q 029142 109 GLTKDEGIQLVVDAICSGIFND 130 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~~~~d 130 (198)
+||.|+|.++.++.++..+-+|
T Consensus 29 ~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 29 AMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988777655
No 55
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=26.39 E-value=57 Score=20.50 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q 029142 108 EGLTKDEGIQLVVDAICSGIFND 130 (198)
Q Consensus 108 ~~ms~eeai~la~~al~~~~~~d 130 (198)
.+||.|+|.++.++.++..+-+|
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999988777555
No 56
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=25.29 E-value=92 Score=21.93 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=35.8
Q ss_pred EEE-EECCCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 029142 73 HLH-TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 123 (198)
Q Consensus 73 ~Ly-~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al 123 (198)
.|| .+|..|.+....|.+.|-+...|-+-+=..+=.++|.+||.++..+.+
T Consensus 43 ~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i 94 (129)
T 3lvl_A 43 KLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDI 94 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHH
T ss_pred EEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455 677668888889999987766554333334445899999988766544
No 57
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=25.18 E-value=2.3e+02 Score=23.24 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCceeecC---eEEEecChHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 80 HGSTDTLP---FATMGSGSLAAMAMFESK----YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 80 ~Gs~~~~~---~~a~G~gs~~a~~~Le~~----~~~~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
.|.+-... ..++|.|..+++..+-.. .+.++|++||.+.+++-+..-+. +..=+-.++++|.
T Consensus 207 aG~yAdn~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~eA~~~~i~~~~~~~~------g~gG~Iavd~~G~ 275 (310)
T 4gdv_A 207 AGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVK------GLGGLIVVSKTGD 275 (310)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC------CCEEEEEEETTSC
T ss_pred ceeEecCCcEEEEeecCcHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcC------CcEEEEEEeCCCC
Confidence 45554433 568999999887655533 34689999999888776654332 2233556688874
No 58
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=24.44 E-value=57 Score=20.83 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 109 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
+|+.+||+..+.+.|..+..+-....+.-.+.||+-.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 689999999988888876641000012346888887665
No 59
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=24.17 E-value=76 Score=20.87 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCe
Q 029142 109 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 147 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~~~~d~~sg~~iei~ii~k~g~ 147 (198)
+|+.+||+..+.+.|..+...-..+.+.-.|.||+-.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 689999999998888876531000112347889987775
No 60
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=22.87 E-value=81 Score=19.91 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=20.5
Q ss_pred HHHHHHHhhccC-CCCHHHHHHHHHH
Q 029142 97 AAMAMFESKYKE-GLTKDEGIQLVVD 121 (198)
Q Consensus 97 ~a~~~Le~~~~~-~ms~eeai~la~~ 121 (198)
.|+-+|..+|++ +.|+-|.++.|+.
T Consensus 21 sAYyLL~~~ykkg~FsL~ELiKFAks 46 (75)
T 2kxe_A 21 SAYYLLVGHFNEGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccHHHHHHHHHh
Confidence 466788889988 8999999988763
No 61
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=22.84 E-value=62 Score=18.34 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHHH
Q 029142 108 EGLTKDEGIQLVVDA 122 (198)
Q Consensus 108 ~~ms~eeai~la~~a 122 (198)
|+||.+|-+.||.+-
T Consensus 2 p~mtEEEq~ALA~rm 16 (45)
T 3a1q_C 2 PLGSEEEQFALALKM 16 (45)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH
Confidence 678888888777653
No 62
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=22.72 E-value=61 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 029142 109 GLTKDEGIQLVVDAICSG 126 (198)
Q Consensus 109 ~ms~eeai~la~~al~~~ 126 (198)
+++.|||++-|+..|+++
T Consensus 21 ~~~~EeALe~ar~~L~~g 38 (116)
T 2gdt_A 21 GDSVEEALSEAREHLKNG 38 (116)
T ss_dssp CSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhcC
Confidence 789999999999999874
No 63
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=22.38 E-value=73 Score=22.41 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=22.4
Q ss_pred eEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 029142 88 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 122 (198)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~a 122 (198)
+|..|.|.....-.+--.+..+++.++|++.+++.
T Consensus 115 HC~aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~~ 149 (167)
T 3s4o_A 115 HCVAGLGRAPILVALALVEYGNVSALDAIALIREK 149 (167)
T ss_dssp ECSSSSSHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45556665554444443445689999998887664
No 64
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=22.32 E-value=96 Score=18.47 Aligned_cols=35 Identities=11% Similarity=0.349 Sum_probs=23.8
Q ss_pred HHHHHHHhhcc-CCCC--HHHHHHHHHHHHHHHHhccC
Q 029142 97 AAMAMFESKYK-EGLT--KDEGIQLVVDAICSGIFNDL 131 (198)
Q Consensus 97 ~a~~~Le~~~~-~~ms--~eeai~la~~al~~~~~~d~ 131 (198)
.+..+|..... ..++ ..|.++.|++||..+..-|.
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 34566665543 3344 46788999999999987553
No 65
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=21.49 E-value=1.2e+02 Score=20.30 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=23.3
Q ss_pred HHHHHHHhhcc-CCCCH--HHHHHHHHHHHHHHHhcc
Q 029142 97 AAMAMFESKYK-EGLTK--DEGIQLVVDAICSGIFND 130 (198)
Q Consensus 97 ~a~~~Le~~~~-~~ms~--eeai~la~~al~~~~~~d 130 (198)
.+..+|..... ..++. .|.++.|++||..+..-|
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 34566665544 34544 678899999999998644
No 66
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=21.38 E-value=79 Score=22.67 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=21.0
Q ss_pred eEEEecChHH--HHHHHHhhccCCCCHHHHHHHHHHH
Q 029142 88 FATMGSGSLA--AMAMFESKYKEGLTKDEGIQLVVDA 122 (198)
Q Consensus 88 ~~a~G~gs~~--a~~~Le~~~~~~ms~eeai~la~~a 122 (198)
.|..|.+... +..+|=. +.+++.++|++.++.+
T Consensus 93 HC~~G~sRS~~vv~ayLm~--~~~~s~~~A~~~v~~~ 127 (161)
T 3emu_A 93 ISGTGVNKAPAIVIAFLMY--YQRLSFINAFNKVQGL 127 (161)
T ss_dssp EESSSSSHHHHHHHHHHHH--HTTCCHHHHHHHHHHH
T ss_pred EcCCCCcHHHHHHHHHHHH--HhCCCHHHHHHHHHHH
Confidence 4555655543 3444443 3479999999988765
No 67
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=21.27 E-value=68 Score=19.65 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=17.5
Q ss_pred EEecChHHHHHHHHhhc--cCCCCHHHHHHHHH
Q 029142 90 TMGSGSLAAMAMFESKY--KEGLTKDEGIQLVV 120 (198)
Q Consensus 90 a~G~gs~~a~~~Le~~~--~~~ms~eeai~la~ 120 (198)
+.|+....+...+++.- .++++.++.++.++
T Consensus 26 aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL 58 (62)
T 1ixs_A 26 ALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL 58 (62)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45666666666666543 34566666554444
No 68
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=20.51 E-value=1.6e+02 Score=21.51 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=39.3
Q ss_pred CEEE-EEC-CCCceeecCeEEEecChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 029142 72 PHLH-TIY-PHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSG 126 (198)
Q Consensus 72 p~Ly-~id-p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eeai~la~~al~~~ 126 (198)
-.|| .+| ..|.+....|.+.|-+...|-+-+=..+=.+.|++||.++..+.+...
T Consensus 40 i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~ 96 (157)
T 2z7e_A 40 MLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEE 96 (157)
T ss_dssp EEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHH
T ss_pred EEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHH
Confidence 3565 567 468888889999998777665444444556999999998877655433
No 69
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=20.31 E-value=1.4e+02 Score=19.11 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHhhcc-CCCCH--HHHHHHHHHHHHHHHhcc
Q 029142 97 AAMAMFESKYK-EGLTK--DEGIQLVVDAICSGIFND 130 (198)
Q Consensus 97 ~a~~~Le~~~~-~~ms~--eeai~la~~al~~~~~~d 130 (198)
.+..+|..... ..++. .|.++.|++||..+..-|
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 45566665544 34544 678899999999998655
Done!