Query 029143
Match_columns 198
No_of_seqs 105 out of 157
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 99.9 4.2E-23 9E-28 156.7 7.9 95 58-156 1-97 (97)
2 PTZ00201 amastin surface glyco 93.6 0.25 5.3E-06 42.3 6.6 88 51-159 76-165 (192)
3 KOG4016 Synaptic vesicle prote 87.5 19 0.00042 31.6 13.8 112 42-170 56-173 (233)
4 PF05478 Prominin: Prominin; 84.9 2.4 5.1E-05 42.9 6.5 25 90-114 138-162 (806)
5 PF01284 MARVEL: Membrane-asso 82.9 18 0.00039 27.3 13.6 25 137-161 118-142 (144)
6 PF07344 Amastin: Amastin surf 79.9 18 0.00039 29.3 8.8 92 44-159 54-150 (155)
7 cd07912 Tweety_N N-terminal do 76.5 7.9 0.00017 36.8 6.5 8 75-82 63-70 (418)
8 PF04906 Tweety: Tweety; Inte 76.3 4.7 0.0001 37.8 5.0 32 56-87 23-55 (406)
9 PF13903 Claudin_2: PMP-22/EMP 75.3 36 0.00078 26.3 9.4 26 93-118 102-127 (172)
10 PF07344 Amastin: Amastin surf 70.2 25 0.00054 28.4 7.3 87 7-113 67-155 (155)
11 PF07062 Clc-like: Clc-like; 67.7 73 0.0016 27.6 10.0 18 142-159 185-202 (211)
12 KOG4433 Tweety transmembrane/c 62.5 7 0.00015 38.0 3.0 49 55-106 46-98 (526)
13 PF05360 YiaAB: yiaA/B two hel 57.6 19 0.00041 24.5 3.7 44 99-155 2-45 (53)
14 PF09788 Tmemb_55A: Transmembr 50.8 45 0.00097 29.9 5.9 68 73-159 178-246 (256)
15 PF08507 COPI_assoc: COPI asso 47.5 30 0.00065 27.2 3.9 42 151-192 93-136 (136)
16 PF05478 Prominin: Prominin; 43.3 76 0.0016 32.3 6.9 72 44-118 406-490 (806)
17 PF04478 Mid2: Mid2 like cell 42.9 12 0.00025 31.3 0.9 42 155-196 66-122 (154)
18 KOG1397 Ca2+/H+ antiporter VCX 42.6 1.7E+02 0.0036 28.3 8.5 18 174-191 267-284 (441)
19 PF02468 PsbN: Photosystem II 35.9 34 0.00075 22.7 2.1 28 150-177 10-43 (43)
20 PTZ00370 STEVOR; Provisional 33.8 49 0.0011 30.3 3.5 29 145-173 260-288 (296)
21 PRK11383 hypothetical protein; 33.1 1.6E+02 0.0035 24.3 6.1 56 96-170 73-128 (145)
22 PF03188 Cytochrom_B561: Eukar 32.8 2.2E+02 0.0048 21.6 7.6 24 50-73 70-93 (137)
23 PRK13183 psbN photosystem II r 32.6 33 0.00072 23.1 1.7 28 150-177 13-46 (46)
24 PTZ00201 amastin surface glyco 30.0 1.5E+02 0.0033 25.3 5.7 21 139-159 70-90 (192)
25 PF12270 Cyt_c_ox_IV: Cytochro 29.6 74 0.0016 26.0 3.6 45 144-188 36-81 (137)
26 CHL00020 psbN photosystem II p 28.6 37 0.0008 22.6 1.4 28 150-177 10-43 (43)
27 KOG3626 Organic anion transpor 28.4 1.2E+02 0.0025 31.2 5.4 102 81-195 613-732 (735)
28 cd08764 Cyt_b561_CG1275_like N 28.3 2.1E+02 0.0046 24.8 6.4 26 52-77 97-122 (214)
29 TIGR01478 STEVOR variant surfa 28.2 65 0.0014 29.5 3.3 27 145-171 264-290 (295)
30 PF13903 Claudin_2: PMP-22/EMP 27.3 2.9E+02 0.0062 21.1 8.3 90 8-113 74-170 (172)
31 PF10624 TraS: Plasmid conjuga 27.1 75 0.0016 26.3 3.2 50 8-57 73-143 (164)
32 PF11169 DUF2956: Protein of u 26.5 60 0.0013 25.4 2.4 18 93-110 84-101 (103)
33 PRK11383 hypothetical protein; 26.0 2E+02 0.0043 23.8 5.4 23 98-120 12-34 (145)
34 PF03032 Brevenin: Brevenin/es 25.7 45 0.00098 22.3 1.4 20 4-23 2-21 (46)
35 PF04834 Adeno_E3_14_5: Early 25.0 73 0.0016 24.7 2.6 31 133-163 11-47 (97)
36 KOG4026 Uncharacterized conser 23.8 5E+02 0.011 22.7 14.2 156 3-174 4-193 (207)
37 PF03268 DUF267: Caenorhabditi 23.0 2.2E+02 0.0047 26.8 5.8 68 116-186 132-203 (353)
38 PF04103 CD20: CD20-like famil 22.8 10 0.00022 29.1 -2.5 21 11-31 5-25 (150)
39 PF06645 SPC12: Microsomal sig 21.7 1.3E+02 0.0028 21.8 3.3 25 6-30 11-35 (76)
40 KOG4112 Signal peptidase subun 21.5 99 0.0021 24.0 2.7 24 7-30 27-50 (101)
41 KOG4671 Brain cell membrane pr 21.0 4.7E+02 0.01 22.7 7.0 33 131-163 67-100 (201)
42 PF01102 Glycophorin_A: Glycop 20.9 1.2E+02 0.0027 24.1 3.3 25 145-169 71-95 (122)
43 cd08763 Cyt_b561_CYB561 Verteb 20.8 4E+02 0.0086 21.5 6.3 94 3-106 38-132 (143)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.89 E-value=4.2e-23 Score=156.67 Aligned_cols=95 Identities=26% Similarity=0.357 Sum_probs=76.8
Q ss_pred HHHHHHHHH-HhhhhhcccccccCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhccccccCCCCCcC
Q 029143 58 LSAAFLVAS-IVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLL-LWPTITEQIHLSRKVHSNPQAQC 135 (198)
Q Consensus 58 ~A~lfLl~s-~~~G~~~~c~cC~gr~~p~~~~~~sr~~ai~~~i~sWitf~iA~~L-l~ga~~n~~h~~~~~~~~~~~~C 135 (198)
+|++||+++ +++...+.|.|| +|+.++++ .++|.++++++++||++|++++.+ ++|+++|++|++++.+. +++|
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc-~~~~~~~~-~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~--~~~C 76 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCC-GKRVSPKS-SRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF--NPSC 76 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEe-CCCCCCcc-cccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc--CCcc
Confidence 378888888 444445568667 55554421 238999999999999999998665 77999999999997654 8899
Q ss_pred ccccCcchhhHHHHHHHHHHH
Q 029143 136 LTAKTGLLGGGAFVSLDSSLF 156 (198)
Q Consensus 136 ~~~k~GvFagaA~lsL~t~l~ 156 (198)
|++|+|+|++||+|+|+|++|
T Consensus 77 ~~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 77 YTVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred cccCCceeeHhHHHHHHHHhC
Confidence 999999999999999999875
No 2
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=93.56 E-value=0.25 Score=42.26 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=56.3
Q ss_pred chhhhHHHHHHHHHHHHhhhhhcccccccCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCC
Q 029143 51 PSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSN 130 (198)
Q Consensus 51 pA~glGv~A~lfLl~s~~~G~~~~c~cC~gr~~p~~~~~~sr~~ai~~~i~sWitf~iA~~Ll~ga~~n~~h~~~~~~~~ 130 (198)
.|=++.+.|++...++.+-|...+| ||+ . .|.+..++.+++-++..| -|+.+.-.||++
T Consensus 76 ~aqAfaIISI~v~~aA~vlg~~~l~-cc~-------~---lr~vcl~Lnivg~vt~~V----vWa~mv~~Y~~~------ 134 (192)
T PTZ00201 76 VAQALAVISILVYGAAFVLGLVLLY-GCT-------I---HRWVCLALNIVGAVTLGV----VWAAMVVTYYKD------ 134 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-ccc-------h---HHHHHHHHHHHHHHHHhe----eeeeEEEEEEcC------
Confidence 3557788888888888676776656 451 1 466667777766555543 444444334322
Q ss_pred CCCcCccccC-c-chhhHHHHHHHHHHHHHH
Q 029143 131 PQAQCLTAKT-G-LLGGGAFVSLDSSLFWLV 159 (198)
Q Consensus 131 ~~~~C~~~k~-G-vFagaA~lsL~t~l~~i~ 159 (198)
....|+..|+ + -|++|=+|-+.+-.+.++
T Consensus 135 ~~~~C~~~~~~~~~yGaGF~Llv~AW~L~ii 165 (192)
T PTZ00201 135 DGPLCPRVRDMGYRFGTGFALLVVAWILDIL 165 (192)
T ss_pred CCccccccccCCCCccCcHHHHHHHHHHHHH
Confidence 2336987776 4 588888888888777777
No 3
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=19 Score=31.64 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=57.5
Q ss_pred ceeeeCCCCch-hhhHHHHHHHHHHH--HhhhhhcccccccCCCCCCCccccch-hHHHHHHHHHHH-HHHHHHHHHHHh
Q 029143 42 GVICKYPSDPS-VVLGYLSAAFLVAS--IVAGYLSLFYPYKGRSVPHSVFFRST-SFTVFFNIAVFT-GGLAATLLLWPT 116 (198)
Q Consensus 42 ~~~C~YpsdpA-~glGv~A~lfLl~s--~~~G~~~~c~cC~gr~~p~~~~~~sr-~~ai~~~i~sWi-tf~iA~~Ll~ga 116 (198)
..+|.|.+|+. -.+|++.-+|.+++ +..+.=. ... .+ ++...|+| .++-+.+-..|- .+++.+|.||
T Consensus 56 ~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~----~f~-qI-Ssv~~RkraVl~Dl~~SalwtflwfvGFc~l~-- 127 (233)
T KOG4016|consen 56 EEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDV----YFP-QI-SSVKDRKRAVLADLGVSALWAFLWFVGFCFLA-- 127 (233)
T ss_pred ceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHh----hhh-hh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 46899999863 33333332222222 2222111 111 11 12233455 466666777776 4666777787
Q ss_pred hhhhhhccccccCCCCCcCccccCcchhhHHHHHHHHHHHHHH-HHHHHhccccc
Q 029143 117 ITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLV-ALMLADNARED 170 (198)
Q Consensus 117 ~~n~~h~~~~~~~~~~~~C~~~k~GvFagaA~lsL~t~l~~i~-y~~l~~~ar~~ 170 (198)
|+- ... .+.+ -.++.|=--+|=.++|++.+.|.. -++-+.+=|++
T Consensus 128 --nqw--qvs----~p~~-~~~~a~saraaIafsffSilsW~~~A~lA~qR~~~g 173 (233)
T KOG4016|consen 128 --NQW--QVS----KPKE-NPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYRIG 173 (233)
T ss_pred --HHh--hcc----CCCC-CCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 432 221 1111 245666555666789999999998 34444444443
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=84.91 E-value=2.4 Score=42.95 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 029143 90 RSTSFTVFFNIAVFTGGLAATLLLW 114 (198)
Q Consensus 90 ~sr~~ai~~~i~sWitf~iA~~Ll~ 114 (198)
|++.+++++++++.+..+..++.+.
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~aF~ 162 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVICAFV 162 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888877777765554444444
No 5
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=82.92 E-value=18 Score=27.35 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=19.5
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHH
Q 029143 137 TAKTGLLGGGAFVSLDSSLFWLVAL 161 (198)
Q Consensus 137 ~~k~GvFagaA~lsL~t~l~~i~y~ 161 (198)
..+-+..-++++|++++.++++...
T Consensus 118 ~~~~~~~~Aa~~f~~~~~~l~~~s~ 142 (144)
T PF01284_consen 118 CSRCGAWKAAAAFGFLNWLLFIVSA 142 (144)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3445777889999999999988754
No 6
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=79.86 E-value=18 Score=29.28 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=59.3
Q ss_pred eeeCCCC---chhhhHHHHHHHHHHHHhhhhhcccccccCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 029143 44 ICKYPSD---PSVVLGYLSAAFLVASIVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQ 120 (198)
Q Consensus 44 ~C~Ypsd---pA~glGv~A~lfLl~s~~~G~~~~c~cC~gr~~p~~~~~~sr~~ai~~~i~sWitf~iA~~Ll~ga~~n~ 120 (198)
.|...++ .+-++.+.|.+..+++.+.|... ++|| +. .|...+.++++++++..+.. +.+...
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~-l~~~-------~~---~r~v~l~L~~~~~~~~~v~w----a~~v~~ 118 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLL-LCCC-------SC---LRWVCLVLNIVGIVTLLVVW----ALMVVV 118 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-------hh---HHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4544442 46788888888888887777775 3344 11 56777888888888776544 333344
Q ss_pred hhccccccCCCCCcCcccc-Cc-chhhHHHHHHHHHHHHHH
Q 029143 121 IHLSRKVHSNPQAQCLTAK-TG-LLGGGAFVSLDSSLFWLV 159 (198)
Q Consensus 121 ~h~~~~~~~~~~~~C~~~k-~G-vFagaA~lsL~t~l~~i~ 159 (198)
|| ...|+.++ ++ -|+.|=.|.+.+-++.++
T Consensus 119 Y~---------~~~C~~~~~~~~~yg~GF~L~v~aw~l~~i 150 (155)
T PF07344_consen 119 YY---------GGFCGALKSRGYKYGAGFALFVAAWCLDII 150 (155)
T ss_pred Hc---------cCCCcCccCCCcccCccHHHHHHHHHHHHH
Confidence 43 33577654 45 677777777777666665
No 7
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=76.48 E-value=7.9 Score=36.76 Aligned_cols=8 Identities=0% Similarity=-0.205 Sum_probs=4.1
Q ss_pred cccccCCC
Q 029143 75 FYPYKGRS 82 (198)
Q Consensus 75 c~cC~gr~ 82 (198)
|+||+.|+
T Consensus 63 ~~CCcr~~ 70 (418)
T cd07912 63 TRCCDRKP 70 (418)
T ss_pred HhccCCCC
Confidence 55665443
No 8
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=76.25 E-value=4.7 Score=37.78 Aligned_cols=32 Identities=16% Similarity=0.002 Sum_probs=15.3
Q ss_pred HHHHHHHHHHH-HhhhhhcccccccCCCCCCCc
Q 029143 56 GYLSAAFLVAS-IVAGYLSLFYPYKGRSVPHSV 87 (198)
Q Consensus 56 Gv~A~lfLl~s-~~~G~~~~c~cC~gr~~p~~~ 87 (198)
|..+++.|.++ ....+...|+||+.|..++..
T Consensus 23 a~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~~~~ 55 (406)
T PF04906_consen 23 ASVAAACLALSLLFLLIYLICRCCCRRPREEKS 55 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Confidence 33344444444 233344456677666544433
No 9
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=75.26 E-value=36 Score=26.31 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029143 93 SFTVFFNIAVFTGGLAATLLLWPTIT 118 (198)
Q Consensus 93 ~~ai~~~i~sWitf~iA~~Ll~ga~~ 118 (198)
..+.++++++.+..+++.+.......
T Consensus 102 ~~~~~~~~~ag~~~l~~l~~~~~~~~ 127 (172)
T PF13903_consen 102 LFAGILFILAGLCILIALIVFVVSVN 127 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666888888888877776665443
No 10
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=70.16 E-value=25 Score=28.43 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCceeeeCCCCchhhhHHHHHHHHHHHHhhhhhc--ccccccCCCCC
Q 029143 7 QMSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLS--LFYPYKGRSVP 84 (198)
Q Consensus 7 ~v~~vV~~LgliAFiLgi~AE~kr~~a~~~~~~~d~~~C~YpsdpA~glGv~A~lfLl~s~~~G~~~--~c~cC~gr~~p 84 (198)
..+++-.+++..+|++|+..=-.+ ...+=+...|.+.++++++++-+.+... .=+ | + ..+
T Consensus 67 afaIisi~~~~~a~v~g~~~l~~~---------------~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~-C-~-~~~ 128 (155)
T PF07344_consen 67 AFAIISIFVYGAAFVLGVLLLCCC---------------SCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGF-C-G-ALK 128 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-C-c-Ccc
Confidence 344555589999999999855432 3333466889999999998873322221 112 3 2 222
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHH
Q 029143 85 HSVFFRSTSFTVFFNIAVFTGGLAATLLL 113 (198)
Q Consensus 85 ~~~~~~sr~~ai~~~i~sWitf~iA~~Ll 113 (198)
+.. -+=..+-.+++.+|+..+++.++|
T Consensus 129 ~~~--~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 129 SRG--YKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred CCC--cccCccHHHHHHHHHHHHHHHHhC
Confidence 211 022468889999999999877653
No 11
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=67.67 E-value=73 Score=27.61 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHHHHHH
Q 029143 142 LLGGGAFVSLDSSLFWLV 159 (198)
Q Consensus 142 vFagaA~lsL~t~l~~i~ 159 (198)
+..+|+.+-+++.+++++
T Consensus 185 l~~~g~l~~~~a~l~sv~ 202 (211)
T PF07062_consen 185 LHLAGSLLLLFAFLFSVF 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888888899999988
No 12
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=62.47 E-value=7 Score=38.03 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHH-HhhhhhcccccccCCC---CCCCccccchhHHHHHHHHHHHHH
Q 029143 55 LGYLSAAFLVAS-IVAGYLSLFYPYKGRS---VPHSVFFRSTSFTVFFNIAVFTGG 106 (198)
Q Consensus 55 lGv~A~lfLl~s-~~~G~~~~c~cC~gr~---~p~~~~~~sr~~ai~~~i~sWitf 106 (198)
+|..++.+|.++ +..-...+|.||+.|. .++.. .|-.+..++|++-+++
T Consensus 46 la~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~---~~c~s~~l~I~tl~cc 98 (526)
T KOG4433|consen 46 LAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRR---VRCLSWSLIIATLMCC 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCC---cceeeehHHHHHHHHH
Confidence 444555555555 3333445577887766 33332 4444555555555543
No 13
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=57.55 E-value=19 Score=24.45 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccCCCCCcCccccCcchhhHHHHHHHHHH
Q 029143 99 NIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSL 155 (198)
Q Consensus 99 ~i~sWitf~iA~~Ll~ga~~n~~h~~~~~~~~~~~~C~~~k~GvFagaA~lsL~t~l 155 (198)
...+|++|+++..++.....|..+. .--||.++.+-.+.+.++.
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~~~~~~-------------l~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLWNAPLD-------------LSEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHHHHHHH
Confidence 4679999999888766555554321 2347888888888877764
No 14
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=50.81 E-value=45 Score=29.95 Aligned_cols=68 Identities=13% Similarity=-0.082 Sum_probs=43.1
Q ss_pred cccccccCC-CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCCCCcCccccCcchhhHHHHHH
Q 029143 73 SLFYPYKGR-SVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSL 151 (198)
Q Consensus 73 ~~c~cC~gr-~~p~~~~~~sr~~ai~~~i~sWitf~iA~~Ll~ga~~n~~h~~~~~~~~~~~~C~~~k~GvFagaA~lsL 151 (198)
.+|=-|+.. ++-+.- .|.-+++++++.-++++++..+-+||...+. -..|++..-+.+-|
T Consensus 178 ARCPHCrKvSSVG~~f---aRkR~i~f~llgllfliiaigltvGT~~~A~----------------~~~giY~~wv~~~l 238 (256)
T PF09788_consen 178 ARCPHCRKVSSVGPRF---ARKRAIIFFLLGLLFLIIAIGLTVGTWTYAK----------------TYGGIYVSWVGLFL 238 (256)
T ss_pred ccCCCCceeccccchH---hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHh----------------hcCcEeHHHHHHHH
Confidence 357557533 232222 5667888999998888888888777654332 12367777777767
Q ss_pred HHHHHHHH
Q 029143 152 DSSLFWLV 159 (198)
Q Consensus 152 ~t~l~~i~ 159 (198)
++.++-+-
T Consensus 239 ~a~~~~~r 246 (256)
T PF09788_consen 239 IALICLIR 246 (256)
T ss_pred HHHHHHHH
Confidence 66665543
No 15
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=47.51 E-value=30 Score=27.24 Aligned_cols=42 Identities=17% Similarity=-0.034 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcccccc--hhhhhccccccccccCCCCCC
Q 029143 151 LDSSLFWLVALMLADNAREDY--FEELESSHKGVQLTGEYDEPD 192 (198)
Q Consensus 151 L~t~l~~i~y~~l~~~ar~~~--~~~~~~~~~~~~~~~~~~~~~ 192 (198)
+.-...+++|..+.-.+..+. -.++++....+|-.+|+||++
T Consensus 93 ~~~~~~G~~~i~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 136 (136)
T PF08507_consen 93 LLLFLVGVIYIILGFFCPIKEPESMREQEIALSSQQDNEDDSDD 136 (136)
T ss_pred HHHHHHHHHHHHHHHHcCCCCchhcCcccccccccccccccCCC
Confidence 334445556655444433322 224555556677778877764
No 16
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=43.26 E-value=76 Score=32.32 Aligned_cols=72 Identities=17% Similarity=-0.059 Sum_probs=35.0
Q ss_pred eeeCCCC-chhhhHHHHHHHHHHH--Hhhhhhccccccc--CCCCCCCccccchh-------HHHHHHHHHHHHHHHHHH
Q 029143 44 ICKYPSD-PSVVLGYLSAAFLVAS--IVAGYLSLFYPYK--GRSVPHSVFFRSTS-------FTVFFNIAVFTGGLAATL 111 (198)
Q Consensus 44 ~C~Ypsd-pA~glGv~A~lfLl~s--~~~G~~~~c~cC~--gr~~p~~~~~~sr~-------~ai~~~i~sWitf~iA~~ 111 (198)
+-+|.+. =..+++++..++|++- .++-+++ ||+ .+..|...-..+.+ -..+.|+++|+..++...
T Consensus 406 ~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G---~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~ 482 (806)
T PF05478_consen 406 YEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCG---CCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLF 482 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455443 2346677776666654 3333344 663 22223211111222 234557777777776655
Q ss_pred H-HHHhhh
Q 029143 112 L-LWPTIT 118 (198)
Q Consensus 112 L-l~ga~~ 118 (198)
+ +.|...
T Consensus 483 ~Fl~G~~~ 490 (806)
T PF05478_consen 483 YFLVGGNT 490 (806)
T ss_pred HHHHHhhh
Confidence 4 446544
No 17
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.90 E-value=12 Score=31.25 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcccccchhhhhccc---------------cccccccCCCCCCCCCC
Q 029143 155 LFWLVALMLADNAREDYFEELESSH---------------KGVQLTGEYDEPDHLKG 196 (198)
Q Consensus 155 l~~i~y~~l~~~ar~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 196 (198)
++.++|+++..+.|.|+.+-+.+.. -|.+.++||+++-||-+
T Consensus 66 il~lvf~~c~r~kktdfidSdGkvvtay~~n~~~~~w~~l~Gk~~~~~y~s~splg~ 122 (154)
T PF04478_consen 66 ILALVFIFCIRRKKTDFIDSDGKVVTAYRSNKLTKWWYSLLGKKISDKYESNSPLGS 122 (154)
T ss_pred HHHhheeEEEecccCccccCCCcEEEEEcCchHHHHHHHHhCCccccccccCCCCCC
Confidence 5566677777777888776543321 13335899999988876
No 18
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=42.58 E-value=1.7e+02 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.387 Sum_probs=9.5
Q ss_pred hhhccccccccccCCCCC
Q 029143 174 ELESSHKGVQLTGEYDEP 191 (198)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~ 191 (198)
++|++..+++-.||-|+|
T Consensus 267 ~ee~~~~d~~~s~~~e~p 284 (441)
T KOG1397|consen 267 DEEETEQDDEVSNEDEAP 284 (441)
T ss_pred ChhcccccccccccCCCC
Confidence 345545666666654443
No 19
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=35.86 E-value=34 Score=22.73 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=14.3
Q ss_pred HHHHHHHHHH-H--HHHHhc-cc--ccchhhhhc
Q 029143 150 SLDSSLFWLV-A--LMLADN-AR--EDYFEELES 177 (198)
Q Consensus 150 sL~t~l~~i~-y--~~l~~~-ar--~~~~~~~~~ 177 (198)
++...++++. | |..+.. ++ .|.|||||+
T Consensus 10 ~i~~~lv~~Tgy~iYtaFGppSk~LrDPfeeHeD 43 (43)
T PF02468_consen 10 FISCLLVSITGYAIYTAFGPPSKELRDPFEEHED 43 (43)
T ss_pred HHHHHHHHHHhhhhhheeCCCccccCCcccccCC
Confidence 3444555555 3 444432 22 388888764
No 20
>PTZ00370 STEVOR; Provisional
Probab=33.85 E-value=49 Score=30.30 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccchh
Q 029143 145 GGAFVSLDSSLFWLVALMLADNAREDYFE 173 (198)
Q Consensus 145 gaA~lsL~t~l~~i~y~~l~~~ar~~~~~ 173 (198)
+|-||.++++++-|+|.+|+.+....|--
T Consensus 260 aalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 45567788899999999999988766543
No 21
>PRK11383 hypothetical protein; Provisional
Probab=33.13 E-value=1.6e+02 Score=24.34 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCCCCcCccccCcchhhHHHHHHHHHHHHHHHHHHHhccccc
Q 029143 96 VFFNIAVFTGGLAATLLLWPTITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNARED 170 (198)
Q Consensus 96 i~~~i~sWitf~iA~~Ll~ga~~n~~h~~~~~~~~~~~~C~~~k~GvFagaA~lsL~t~l~~i~y~~l~~~ar~~ 170 (198)
-++.-+||++.++++.||.-...|+. =..--||.++.+=+++|++.+. +..|-|+.
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGLwNA~-------------l~lsEKGfY~~af~lsLFgai~------vQKn~RD~ 128 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGLWNAT-------------LLLSEKGFYGLAFFLSLFGAVA------VQKNIRDA 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-------------cchhhhhHHHHHHHHHHHHHHH------HHhhhhhh
Confidence 36788999999999988776666653 1122479998888888777653 45667754
No 22
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=32.82 E-value=2.2e+02 Score=21.60 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=19.1
Q ss_pred CchhhhHHHHHHHHHHHHhhhhhc
Q 029143 50 DPSVVLGYLSAAFLVASIVAGYLS 73 (198)
Q Consensus 50 dpA~glGv~A~lfLl~s~~~G~~~ 73 (198)
++=--+|+.++++.++..+.|...
T Consensus 70 s~H~~lG~~~~~l~~~Q~~~G~~~ 93 (137)
T PF03188_consen 70 SWHSILGLATFVLALLQPLLGFFR 93 (137)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888886
No 23
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=32.61 E-value=33 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHHHHH-H--HHHHhcc-c--ccchhhhhc
Q 029143 150 SLDSSLFWLV-A--LMLADNA-R--EDYFEELES 177 (198)
Q Consensus 150 sL~t~l~~i~-y--~~l~~~a-r--~~~~~~~~~ 177 (198)
++...++++. | |..+.+. + .|.|||||+
T Consensus 13 ~i~~lL~~~TgyaiYtaFGppSk~LrDPFeeHeD 46 (46)
T PRK13183 13 TILAILLALTGFGIYTAFGPPSKELDDPFDDHED 46 (46)
T ss_pred HHHHHHHHHhhheeeeccCCcccccCCchhhcCC
Confidence 4455566666 3 3333332 2 277877763
No 24
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=30.04 E-value=1.5e+02 Score=25.34 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=15.5
Q ss_pred cCcchhhHHHHHHHHHHHHHH
Q 029143 139 KTGLLGGGAFVSLDSSLFWLV 159 (198)
Q Consensus 139 k~GvFagaA~lsL~t~l~~i~ 159 (198)
|...|-.|++|++++..+..+
T Consensus 70 rr~~Fr~aqAfaIISI~v~~a 90 (192)
T PTZ00201 70 RILQFRVAQALAVISILVYGA 90 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999888765443
No 25
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=29.62 E-value=74 Score=25.97 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHhcccccchhhhhccccccccccCC
Q 029143 144 GGGAFVSLDSSLFWLV-ALMLADNAREDYFEELESSHKGVQLTGEY 188 (198)
Q Consensus 144 agaA~lsL~t~l~~i~-y~~l~~~ar~~~~~~~~~~~~~~~~~~~~ 188 (198)
+|..+|.|...+..++ .|+-...+|-|-.|||.+|..=++=.+||
T Consensus 36 ~Gt~aL~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgAGe~ 81 (137)
T PF12270_consen 36 VGTVALVLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGAGEL 81 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCCc
Confidence 5667777776666666 45545555556666655554333334444
No 26
>CHL00020 psbN photosystem II protein N
Probab=28.56 E-value=37 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=14.6
Q ss_pred HHHHHHHHHH-H--HHHHhcc-c--ccchhhhhc
Q 029143 150 SLDSSLFWLV-A--LMLADNA-R--EDYFEELES 177 (198)
Q Consensus 150 sL~t~l~~i~-y--~~l~~~a-r--~~~~~~~~~ 177 (198)
.+...++++. | |..+.+. + .|.|||||+
T Consensus 10 ~i~~ll~~~Tgy~iYtaFGppSk~LrDPfeeHeD 43 (43)
T CHL00020 10 FISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43 (43)
T ss_pred HHHHHHHHhhheeeeeccCCchhccCCchhhcCC
Confidence 3445556665 3 4434332 2 377877763
No 27
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.42 E-value=1.2e+02 Score=31.23 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhhccccccCCCCCcCcc-----ccCcchhh
Q 029143 81 RSVPHSVFFRSTSFTVFFNIAVFTGGLA----------ATLLLWPTITEQIHLSRKVHSNPQAQCLT-----AKTGLLGG 145 (198)
Q Consensus 81 r~~p~~~~~~sr~~ai~~~i~sWitf~i----------A~~Ll~ga~~n~~h~~~~~~~~~~~~C~~-----~k~GvFag 145 (198)
|.+|++. |+-..++-+++++-+.++= ..|++|+...+ ..+.|.+ .|.=.++-
T Consensus 613 R~V~~e~--ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~W~~~C~-----------~~GsC~iYd~~~lr~~y~gl 679 (735)
T KOG3626|consen 613 RCVPPEE--KSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLLWGKSCG-----------SRGSCLIYDNDSLRYRYLGL 679 (735)
T ss_pred EccCchh--chhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHHhhcccC-----------CCCceeeechHHHHHHHHHH
Confidence 5567654 3455666655555443322 45566654443 1234544 45544456
Q ss_pred HHHHHHHHHHHHHH-HHHHHhcccc-cchhhh-hccccccccccCCCCCCCCC
Q 029143 146 GAFVSLDSSLFWLV-ALMLADNARE-DYFEEL-ESSHKGVQLTGEYDEPDHLK 195 (198)
Q Consensus 146 aA~lsL~t~l~~i~-y~~l~~~ar~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 195 (198)
..++-+.+.++-++ +++.+.++++ +..|++ |+.-+.++..+++-.+++.+
T Consensus 680 ~~~~~~~~~i~~i~~~~v~r~~~k~~~~~d~~~e~~~~~~~~~~~~~~~~~~~ 732 (735)
T KOG3626|consen 680 HIILKVIALILLIIDLYVWRKLAKDLKISDEGDETNLEKLSSDDISLNPAQLD 732 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCccccchhhcccccccCCccccc
Confidence 67777777777777 4444425544 444443 55545555566666666554
No 28
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.29 E-value=2.1e+02 Score=24.79 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhccccc
Q 029143 52 SVVLGYLSAAFLVASIVAGYLSLFYP 77 (198)
Q Consensus 52 A~glGv~A~lfLl~s~~~G~~~~c~c 77 (198)
=-.+|++..++..+..+.|...-.+|
T Consensus 97 HSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 97 HSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34689988888888888888763343
No 29
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.20 E-value=65 Score=29.49 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccc
Q 029143 145 GGAFVSLDSSLFWLVALMLADNAREDY 171 (198)
Q Consensus 145 gaA~lsL~t~l~~i~y~~l~~~ar~~~ 171 (198)
+|-||.++++++-|+|.+|+.+....|
T Consensus 264 aalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 556788889999999999998876544
No 30
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=27.26 E-value=2.9e+02 Score=21.14 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCceeeeCCCCchhhhHHHHHHHHHHHHhhhhhccccccc------C-
Q 029143 8 MSLIVGTLGTLSFICGVIAENKKPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYK------G- 80 (198)
Q Consensus 8 v~~vV~~LgliAFiLgi~AE~kr~~a~~~~~~~d~~~C~YpsdpA~glGv~A~lfLl~s~~~G~~~~c~cC~------g- 80 (198)
+.++-.++.++++++++.+.-+|+. .+.. ++..+.+.|.++.+++.+.-... . --. .
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~-----------~~~~---~~~~~~~~ag~~~l~~l~~~~~~-~-~~~~~~~~~~~ 137 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSY-----------TLYL---FAGILFILAGLCILIALIVFVVS-V-NYEIEINFPQW 137 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-----------chhH---HHHHHHHHHHHHHHHHHHHHHHH-H-HHHhhhhhhcc
Confidence 3344447788889999988888742 1111 13345555666665552221111 0 000 0
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 029143 81 RSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLL 113 (198)
Q Consensus 81 r~~p~~~~~~sr~~ai~~~i~sWitf~iA~~Ll 113 (198)
.+.++...-.+-.++..+...+.+..+++.+|+
T Consensus 138 ~~~~~~~~~~~~gwSf~la~~a~~~~l~a~~l~ 170 (172)
T PF13903_consen 138 PPDPPSPFSYSYGWSFWLAWVAFILLLLAGILF 170 (172)
T ss_pred cccCccCeeEEECHHHHHHHHHHHHHHHHHHHH
Confidence 111111101133577777777777777776653
No 31
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=27.06 E-value=75 Score=26.34 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccc---------CCC---------c---eeeeCCCCchhhhHH
Q 029143 8 MSLIVGTLGTLSFICGVIAENKKPASGTPIP---------LKG---------G---VICKYPSDPSVVLGY 57 (198)
Q Consensus 8 v~~vV~~LgliAFiLgi~AE~kr~~a~~~~~---------~~d---------~---~~C~YpsdpA~glGv 57 (198)
-|++-=+|.|.+|++|=.-|-||-+.-..++ ..| + ..=.|+++||+||-.
T Consensus 73 csllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~q~~~q~~~~~~ldf~~ve~~~~~~~rtnpatg~pm 143 (164)
T PF10624_consen 73 CSLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQSQVNEQYDEDLHLDFESVEFDYTTYYRTNPATGLPM 143 (164)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHHHHhhhcCccccccccCcccCcccccccCCCcCCcc
Confidence 3444449999999999999999865533332 111 0 124588999999843
No 32
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.54 E-value=60 Score=25.40 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 029143 93 SFTVFFNIAVFTGGLAAT 110 (198)
Q Consensus 93 ~~ai~~~i~sWitf~iA~ 110 (198)
.+--.++++||+.|++-.
T Consensus 84 ~LPW~LL~lSW~gF~~Y~ 101 (103)
T PF11169_consen 84 WLPWGLLVLSWIGFIAYI 101 (103)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 344459999999998754
No 33
>PRK11383 hypothetical protein; Provisional
Probab=26.01 E-value=2e+02 Score=23.85 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 029143 98 FNIAVFTGGLAATLLLWPTITEQ 120 (198)
Q Consensus 98 ~~i~sWitf~iA~~Ll~ga~~n~ 120 (198)
+..+||+++++...++.-...|+
T Consensus 12 f~~~sw~al~~g~~~y~iGLwnA 34 (145)
T PRK11383 12 FSIVSWIALVGGIVTYLLGLWNA 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 67889999998776644334443
No 34
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=25.66 E-value=45 Score=22.32 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 029143 4 TMKQMSLIVGTLGTLSFICG 23 (198)
Q Consensus 4 ~v~~v~~vV~~LgliAFiLg 23 (198)
+++---+++.+||+||+-++
T Consensus 2 tlKKsllLlfflG~ISlSlC 21 (46)
T PF03032_consen 2 TLKKSLLLLFFLGTISLSLC 21 (46)
T ss_pred cchHHHHHHHHHHHcccchH
Confidence 45556678889999998877
No 35
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=24.95 E-value=73 Score=24.68 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=24.9
Q ss_pred CcCccccCcc-----hhhHHHHHHHHHHHHHH-HHHH
Q 029143 133 AQCLTAKTGL-----LGGGAFVSLDSSLFWLV-ALML 163 (198)
Q Consensus 133 ~~C~~~k~Gv-----FagaA~lsL~t~l~~i~-y~~l 163 (198)
.+||..|.-. .+.+.++.+.++++++. |..+
T Consensus 11 l~CY~~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f 47 (97)
T PF04834_consen 11 LDCYDKKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCF 47 (97)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 5799877654 89999999999999988 5443
No 36
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.78 E-value=5e+02 Score=22.72 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=78.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccC---CC--ceeeeCCCCc----------------hhhhHHHHHH
Q 029143 3 ITMKQMSLIVGTLGTLSFICGVIAENKKPASGTPIPL---KG--GVICKYPSDP----------------SVVLGYLSAA 61 (198)
Q Consensus 3 ~~v~~v~~vV~~LgliAFiLgi~AE~kr~~a~~~~~~---~d--~~~C~Ypsdp----------------A~glGv~A~l 61 (198)
...+.+.++=+++++...++..+|=..+-=-+.+..+ +- .++|++|..| +...=++++.
T Consensus 4 rn~~~~gviW~l~t~c~a~l~~v~fi~P~Wig~~~~~~~g~fGl~~~C~~~~~~~~~~~~~~~~~~~~ips~~~~~a~f~ 83 (207)
T KOG4026|consen 4 RNSRAVGVIWALCTICFAVLFMVAFIQPYWIGDSVNGKPGSFGLFTYCVGPVLPGSLECRGRLASFSSIPSNEFKLAAFF 83 (207)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHhccceeccCCcCCCCccccceeeccCCCCCCcccccCCccccccCCcHHHHHHHHH
Confidence 4456677777888888888888887765222211111 11 2589988644 3333344443
Q ss_pred HHHHH----HhhhhhcccccccCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhcccc---c-c
Q 029143 62 FLVAS----IVAGYLSLFYPYKGRSVPHSVFFRSTSFTVFFNIAVFTGGLAATLLLWPTI-----TEQIHLSRK---V-H 128 (198)
Q Consensus 62 fLl~s----~~~G~~~~c~cC~gr~~p~~~~~~sr~~ai~~~i~sWitf~iA~~Ll~ga~-----~n~~h~~~~---~-~ 128 (198)
.++.. .++-+.....||+.|++ +.+-.|+.+++..+++.|-+ ++...-++- + .
T Consensus 84 vlla~~Lill~i~~~~l~~~c~~~si--------------~~~cg~~q~~a~l~milGc~lyP~GW~s~~vr~~CG~~a~ 149 (207)
T KOG4026|consen 84 VLLAFVLILLLIVFLALLGCCRSKSI--------------FNMCGWMQGIAGLCMILGCALYPDGWDSPEVRRMCGAKAG 149 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhh--------------hhhhHHHHHHHHHHHHHHHHhcCCccCCHHHHHHhccccC
Confidence 33322 12223332347755433 34455666555544444322 222111110 0 0
Q ss_pred CCCCCcCccccCcchhhHHHHHHHHHHHHHHHHHHHhcccccchhh
Q 029143 129 SNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEE 174 (198)
Q Consensus 129 ~~~~~~C~~~k~GvFagaA~lsL~t~l~~i~y~~l~~~ar~~~~~~ 174 (198)
....++|.. |=+ |=-|=.-.+++.++..+.+.+..|......++
T Consensus 150 ky~lG~CsI-gWa-Y~lAIig~~daliL~~lsf~l~~k~~~~~p~~ 193 (207)
T KOG4026|consen 150 KYYLGDCSI-GWA-YYLAIIGILDALILAFLSFVLGTKQQRLLPEE 193 (207)
T ss_pred CccCccccc-cHH-HHHHHHHHHHHHHHHHHHHHhccCCCCcccch
Confidence 123456743 211 22344556778888888777766655555544
No 37
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=22.98 E-value=2.2e+02 Score=26.82 Aligned_cols=68 Identities=25% Similarity=0.228 Sum_probs=36.3
Q ss_pred hhhhhhhccccccCCCCCcCccccCcchhhHHHHHHHHHHHHHHHHHHHhc--ccc-cchhh-hhcccccccccc
Q 029143 116 TITEQIHLSRKVHSNPQAQCLTAKTGLLGGGAFVSLDSSLFWLVALMLADN--ARE-DYFEE-LESSHKGVQLTG 186 (198)
Q Consensus 116 a~~n~~h~~~~~~~~~~~~C~~~k~GvFagaA~lsL~t~l~~i~y~~l~~~--ar~-~~~~~-~~~~~~~~~~~~ 186 (198)
++-|..|.|--... .+-....--.+..-+++.=..+-.-+.+|.+... .|| .||++ -|+-+++++|+|
T Consensus 132 aiy~~~~~ki~~~g---~~~~~~~~~~~~~i~~l~~~is~i~L~~y~lv~~al~REi~yFN~ELe~A~keK~L~n 203 (353)
T PF03268_consen 132 AIYNAVHGKIIYGG---AETSSWYYILDPFINFLCWYISFICLAIYFLVNSALNREIEYFNEELEKASKEKKLKN 203 (353)
T ss_pred HHHHHhhceEEeCC---CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 34566666553322 1222333344455555554555555555555444 576 77776 466667777875
No 38
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=22.83 E-value=10 Score=29.13 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 029143 11 IVGTLGTLSFICGVIAENKKP 31 (198)
Q Consensus 11 vV~~LgliAFiLgi~AE~kr~ 31 (198)
+=.++|+++.+||+.+-..++
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~ 25 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSS 25 (150)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345889999999999887663
No 39
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.68 E-value=1.3e+02 Score=21.79 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccC
Q 029143 6 KQMSLIVGTLGTLSFICGVIAENKK 30 (198)
Q Consensus 6 ~~v~~vV~~LgliAFiLgi~AE~kr 30 (198)
.++..++...+++||+.|+.-|+=+
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~ 35 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777789999999999999977
No 40
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.46 E-value=99 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 029143 7 QMSLIVGTLGTLSFICGVIAENKK 30 (198)
Q Consensus 7 ~v~~vV~~LgliAFiLgi~AE~kr 30 (198)
.--.++.+.|++.|++|++.|+=+
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~Qqls 50 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQQQLS 50 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788999999999999876
No 41
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=20.97 E-value=4.7e+02 Score=22.73 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=20.9
Q ss_pred CCCcCcc-ccCcchhhHHHHHHHHHHHHHHHHHH
Q 029143 131 PQAQCLT-AKTGLLGGGAFVSLDSSLFWLVALML 163 (198)
Q Consensus 131 ~~~~C~~-~k~GvFagaA~lsL~t~l~~i~y~~l 163 (198)
+++.|+- .+.+.+-++|++-+...+...++..+
T Consensus 67 d~~~C~s~~~~~~~~aaAAmL~~g~~i~~I~fil 100 (201)
T KOG4671|consen 67 DPGGCQSTLEVDGGRAAAAMLFIGAAILVICFIL 100 (201)
T ss_pred CCccCcChhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567995 45666667777666666665555443
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.90 E-value=1.2e+02 Score=24.13 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc
Q 029143 145 GGAFVSLDSSLFWLVALMLADNARE 169 (198)
Q Consensus 145 gaA~lsL~t~l~~i~y~~l~~~ar~ 169 (198)
-|.+..++-+++-|.|.+.|.+.+.
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444455556666667776666553
No 43
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.76 E-value=4e+02 Score=21.52 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCcccCCCceeeeCCCCchhhhHHHHHHHHHHHHhhhhhcccccccCC
Q 029143 3 ITMKQMSLIVGTLGTLSFICGVIAENK-KPASGTPIPLKGGVICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKGR 81 (198)
Q Consensus 3 ~~v~~v~~vV~~LgliAFiLgi~AE~k-r~~a~~~~~~~d~~~C~YpsdpA~glGv~A~lfLl~s~~~G~~~~c~cC~gr 81 (198)
++.+.+-.+.-.++++.++.|+.|+.+ |...+. .+ . .+.=-.+|++..++.....+.|...-.+|...+
T Consensus 38 ~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~----~h-----f-~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~ 107 (143)
T cd08763 38 RSTKILHGLLHIMALVISLVGLVAVFDYHQANGY----PD-----M-YSLHSWCGILTFVLYFLQWLIGFSFFLFPGASF 107 (143)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC----Cc-----c-ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 344566677777788888888887443 321110 01 0 133456899888888888888887644554221
Q ss_pred CCCCCccccchhHHHHHHHHHHHHH
Q 029143 82 SVPHSVFFRSTSFTVFFNIAVFTGG 106 (198)
Q Consensus 82 ~~p~~~~~~sr~~ai~~~i~sWitf 106 (198)
..++.-+--.|.++...|+..+.+.
T Consensus 108 ~~r~~~~p~H~~~G~~~f~la~~t~ 132 (143)
T cd08763 108 TLRSQYKPLHEFFGRALFLSSVGTS 132 (143)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111000013456666666555443
Done!