Query 029143
Match_columns 198
No_of_seqs 105 out of 157
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 24.0 32 0.0011 24.2 1.6 39 140-178 15-53 (79)
2 2jp3_A FXYD domain-containing 11.7 1.3E+02 0.0044 20.8 2.1 36 44-80 11-46 (67)
3 2lx0_A Membrane fusion protein 11.2 2.1E+02 0.007 16.7 2.6 16 146-161 13-28 (32)
4 2zt9_E Cytochrome B6-F complex 9.5 2.2E+02 0.0075 16.8 2.3 18 9-26 2-19 (31)
5 2zxe_G FXYD10, phospholemman-l 6.5 2.9E+02 0.01 19.4 2.3 34 44-78 13-46 (74)
6 3pbl_A D(3) dopamine receptor, 6.4 1.1E+03 0.036 19.5 7.3 21 91-111 155-175 (481)
7 2rh1_A Beta-2-adrenergic recep 6.0 9E+02 0.031 20.6 5.8 20 91-110 153-172 (500)
8 1zza_A Stannin, AG8_1; helix, 5.9 4.1E+02 0.014 18.8 2.8 16 49-66 8-23 (90)
9 2klu_A T-cell surface glycopro 5.8 3.9E+02 0.013 18.5 2.6 21 53-73 12-32 (70)
10 2k9j_B Integrin beta-3; transm 5.3 6E+02 0.021 15.5 3.1 26 141-166 15-40 (43)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.01 E-value=32 Score=24.23 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=24.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhcccccchhhhhcc
Q 029143 140 TGLLGGGAFVSLDSSLFWLVALMLADNAREDYFEELESS 178 (198)
Q Consensus 140 ~GvFagaA~lsL~t~l~~i~y~~l~~~ar~~~~~~~~~~ 178 (198)
-|+.+|--.+.|+..++|-++.+..++..-.-|+++++.
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555666666777777777776655556655443
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.68 E-value=1.3e+02 Score=20.85 Aligned_cols=36 Identities=8% Similarity=-0.110 Sum_probs=20.5
Q ss_pred eeeCCCCchhhhHHHHHHHHHHHHhhhhhcccccccC
Q 029143 44 ICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPYKG 80 (198)
Q Consensus 44 ~C~YpsdpA~glGv~A~lfLl~s~~~G~~~~c~cC~g 80 (198)
+.-|.+=---||=+++++|++ +.++-.+.+|.|.+.
T Consensus 11 ~YDY~tLRigGLifA~vLfi~-GI~iilS~kcrCk~~ 46 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIA-GIALALSGKCKCRRN 46 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHH-HHHHHHTTHHHHHHT
T ss_pred ccchHHheecchhhHHHHHHH-HHHHHHcCcccccCC
Confidence 444554455566666655555 555555667877643
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.15 E-value=2.1e+02 Score=16.70 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 029143 146 GAFVSLDSSLFWLVAL 161 (198)
Q Consensus 146 aA~lsL~t~l~~i~y~ 161 (198)
-|.+++.+-.||+.-|
T Consensus 13 valltflafgfwlfky 28 (32)
T 2lx0_A 13 VALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888889998844
No 4
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=9.52 E-value=2.2e+02 Score=16.81 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029143 9 SLIVGTLGTLSFICGVIA 26 (198)
Q Consensus 9 ~~vV~~LgliAFiLgi~A 26 (198)
..++..++++++.+|+++
T Consensus 2 ~~~i~y~~~l~~~~~iA~ 19 (31)
T 2zt9_E 2 LAIVAYIGFLALFTGIAA 19 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345666666666666654
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.52 E-value=2.9e+02 Score=19.36 Aligned_cols=34 Identities=12% Similarity=-0.086 Sum_probs=16.6
Q ss_pred eeeCCCCchhhhHHHHHHHHHHHHhhhhhcccccc
Q 029143 44 ICKYPSDPSVVLGYLSAAFLVASIVAGYLSLFYPY 78 (198)
Q Consensus 44 ~C~YpsdpA~glGv~A~lfLl~s~~~G~~~~c~cC 78 (198)
+.-|.+=---||=+++++|++ +.++-.+++|.|-
T Consensus 13 ~YDY~tLRigGLifA~vLfi~-GI~iilS~kcrCk 46 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVI-GIIILLAGKCRCK 46 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-HHHHHTTTC----
T ss_pred ccchHHheeccchhHHHHHHH-HHHHHHcCccccC
Confidence 344444445566665555554 5555566778754
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=6.41 E-value=1.1e+03 Score=19.45 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 029143 91 STSFTVFFNIAVFTGGLAATL 111 (198)
Q Consensus 91 sr~~ai~~~i~sWitf~iA~~ 111 (198)
++..+..+.++.|+..++..+
T Consensus 155 ~~~~~~~~i~~~W~~~~~~~~ 175 (481)
T 3pbl_A 155 SCRRVALMITAVWVLAFAVSC 175 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788886655433
No 7
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=5.97 E-value=9e+02 Score=20.57 Aligned_cols=20 Identities=5% Similarity=-0.027 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 029143 91 STSFTVFFNIAVFTGGLAAT 110 (198)
Q Consensus 91 sr~~ai~~~i~sWitf~iA~ 110 (198)
++..+....++.|+..++..
T Consensus 153 t~~~~~~~i~~~W~~s~~~~ 172 (500)
T 2rh1_A 153 TKNKARVIILMVWIVSGLTS 172 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeehhhHHHHHHHHHH
Confidence 44556777788898665533
No 8
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=5.89 E-value=4.1e+02 Score=18.84 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=7.7
Q ss_pred CCchhhhHHHHHHHHHHH
Q 029143 49 SDPSVVLGYLSAAFLVAS 66 (198)
Q Consensus 49 sdpA~glGv~A~lfLl~s 66 (198)
.+|++| +...+..+++
T Consensus 8 hspttg--vvtv~vilia 23 (90)
T 1zza_A 8 HSPTTG--VVTVIVILIA 23 (90)
T ss_dssp TTTHHH--HHHHHHHHHH
T ss_pred cCCCcc--eEEehhHHHH
Confidence 345554 4444444443
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=5.82 E-value=3.9e+02 Score=18.49 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHhhhhhc
Q 029143 53 VVLGYLSAAFLVASIVAGYLS 73 (198)
Q Consensus 53 ~glGv~A~lfLl~s~~~G~~~ 73 (198)
..+|..+.+++++...+-|+.
T Consensus 12 ivlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhh
Confidence 478888888777776666554
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=5.33 E-value=6e+02 Score=15.48 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=14.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhc
Q 029143 141 GLLGGGAFVSLDSSLFWLVALMLADN 166 (198)
Q Consensus 141 GvFagaA~lsL~t~l~~i~y~~l~~~ 166 (198)
|+.+|=..+.++..+.|-.+.+..++
T Consensus 15 gvi~~ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 44444444556666666666555443
Done!