Query 029143
Match_columns 198
No_of_seqs 105 out of 157
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029143.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029143hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 25.9 34 0.0025 19.0 3.1 21 8-28 6-26 (34)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 21.5 53 0.0038 18.8 3.4 18 156-173 18-35 (37)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 6.5 1.4E+02 0.011 19.1 2.5 14 9-22 7-20 (158)
4 d1v7pb_ d.169.1.1 (B:) Snake c 6.0 60 0.0043 21.1 0.2 9 44-52 119-127 (127)
5 d1q88a_ e.47.1.1 (A:) 39 kda i 5.8 1.3E+02 0.0092 22.8 2.0 42 152-193 88-134 (192)
6 d1nwaa_ d.58.28.1 (A:) Peptide 5.0 1E+02 0.0073 22.5 0.9 24 119-142 140-163 (168)
7 d1jb0m_ f.23.19.1 (M:) Subunit 4.5 3E+02 0.022 14.6 3.3 18 6-23 8-26 (31)
8 d1v54j_ f.23.4.1 (J:) Mitochon 3.9 1.5E+02 0.011 18.2 1.0 8 190-197 18-25 (58)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 3.3 4E+02 0.029 14.2 3.0 20 140-159 5-24 (33)
10 d2dj7a1 g.39.1.3 (A:44-74) Act 3.1 1.9E+02 0.014 15.7 0.8 12 181-192 6-17 (31)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=25.92 E-value=34 Score=18.95 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 029143 8 MSLIVGTLGTLSFICGVIAEN 28 (198)
Q Consensus 8 v~~vV~~LgliAFiLgi~AE~ 28 (198)
+..+|-+-|+.||+|-++|-.
T Consensus 6 vavvvmvagits~glv~aa~a 26 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHH
Confidence 456677889999998887754
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=21.48 E-value=53 Score=18.80 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcccccchh
Q 029143 156 FWLVALMLADNAREDYFE 173 (198)
Q Consensus 156 ~~i~y~~l~~~ar~~~~~ 173 (198)
++++||+-+.|.||+|.-
T Consensus 18 agLi~YL~rE~~REGyPl 35 (37)
T d1eysh2 18 FGLIIYLRREDKREGYPL 35 (37)
T ss_dssp HHHHHHHHHHTTSSSCSC
T ss_pred HHHHHHHHhcccccCCCC
Confidence 455689999999998853
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.46 E-value=1.4e+02 Score=19.07 Aligned_cols=14 Identities=14% Similarity=0.517 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 029143 9 SLIVGTLGTLSFIC 22 (198)
Q Consensus 9 ~~vV~~LgliAFiL 22 (198)
-+||..+|++|.+.
T Consensus 7 lVViaIIgILaaia 20 (158)
T d2pila_ 7 MIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555544
No 4
>d1v7pb_ d.169.1.1 (B:) Snake coagglutinin beta chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]}
Probab=6.03 E-value=60 Score=21.10 Aligned_cols=9 Identities=44% Similarity=1.313 Sum_probs=7.4
Q ss_pred eeeCCCCch
Q 029143 44 ICKYPSDPS 52 (198)
Q Consensus 44 ~C~YpsdpA 52 (198)
.|+++.|||
T Consensus 119 iCe~~~~Pa 127 (127)
T d1v7pb_ 119 VCKFLTDPA 127 (127)
T ss_dssp EEEEECCCC
T ss_pred EEEEcCCCC
Confidence 788888886
No 5
>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39, C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}
Probab=5.79 E-value=1.3e+02 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.476 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcccccc--hhh-hhccccccc--cccCCCCCCC
Q 029143 152 DSSLFWLVALMLADNAREDY--FEE-LESSHKGVQ--LTGEYDEPDH 193 (198)
Q Consensus 152 ~t~l~~i~y~~l~~~ar~~~--~~~-~~~~~~~~~--~~~~~~~~~~ 193 (198)
.|...=|..+++.+|...++ ++. .++...+++ +++-||++-|
T Consensus 88 etIm~KI~slL~~s~~~~~Wl~~~P~~~k~~~~~~~~itg~Fd~t~~ 134 (192)
T d1q88a_ 88 ETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSISGWFDQNEP 134 (192)
T ss_dssp GGHHHHHHHHHHHHHHTTSCBCCSSSTTTTTSSCCSSCEEEECSSST
T ss_pred chHHHHHHHHHHhhcCCCCceeeCchhhccchhcccchhhhcccCCC
Confidence 45667777888899988877 665 455544444 8888887654
No 6
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.99 E-value=1e+02 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=15.6
Q ss_pred hhhhccccccCCCCCcCccccCcc
Q 029143 119 EQIHLSRKVHSNPQAQCLTAKTGL 142 (198)
Q Consensus 119 n~~h~~~~~~~~~~~~C~~~k~Gv 142 (198)
+.+|++|...+-..+.|...+.++
T Consensus 140 EeyHQ~Yl~Knp~~y~C~~~~p~~ 163 (168)
T d1nwaa_ 140 EPEHQDYLQRYPNGYTCHFVRPGW 163 (168)
T ss_dssp CGGGTTHHHHSTTSCCCCCCCTTS
T ss_pred HHHHHHHHHhCCCCceeEEecCCc
Confidence 478998853222456788887764
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=4.45 E-value=3e+02 Score=14.62 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=11.0
Q ss_pred hHHHHHHH-HHHHHHHHHH
Q 029143 6 KQMSLIVG-TLGTLSFICG 23 (198)
Q Consensus 6 ~~v~~vV~-~LgliAFiLg 23 (198)
+.+.+++. +-|+++|=|+
T Consensus 8 v~valvial~pg~lafrla 26 (31)
T d1jb0m_ 8 VYVALVIALLPAVLAFRLS 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34445554 5688888664
No 8
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.85 E-value=1.5e+02 Score=18.24 Aligned_cols=8 Identities=63% Similarity=0.920 Sum_probs=6.3
Q ss_pred CCCCCCCC
Q 029143 190 EPDHLKGS 197 (198)
Q Consensus 190 ~~~~~~~~ 197 (198)
-|+||||-
T Consensus 18 ~PVhLKGG 25 (58)
T d1v54j_ 18 LPVHLKGG 25 (58)
T ss_dssp CCTTTTTC
T ss_pred ceEEecCC
Confidence 37999984
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=3.32 E-value=4e+02 Score=14.19 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=15.9
Q ss_pred CcchhhHHHHHHHHHHHHHH
Q 029143 140 TGLLGGGAFVSLDSSLFWLV 159 (198)
Q Consensus 140 ~GvFagaA~lsL~t~l~~i~ 159 (198)
+|-.+--++|+|.-.+||+-
T Consensus 5 ~gal~vi~il~l~ilvfw~g 24 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWLG 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 46667778888888889987
No 10
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.07 E-value=1.9e+02 Score=15.66 Aligned_cols=12 Identities=58% Similarity=0.747 Sum_probs=8.3
Q ss_pred ccccccCCCCCC
Q 029143 181 GVQLTGEYDEPD 192 (198)
Q Consensus 181 ~~~~~~~~~~~~ 192 (198)
+..|++||-+.+
T Consensus 6 ~~vL~gEYm~kd 17 (31)
T d2dj7a1 6 SVILTGEYISKD 17 (31)
T ss_dssp CCBCSSCCEEET
T ss_pred CccccceeecCC
Confidence 446999996543
Done!