Query 029144
Match_columns 198
No_of_seqs 148 out of 1491
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0092 GTPase Rab5/YPT51 and 100.0 9.3E-41 2E-45 227.2 18.5 171 3-185 2-174 (200)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.8E-40 6.1E-45 225.7 16.4 167 4-181 7-175 (205)
3 cd01875 RhoG RhoG subfamily. 100.0 3.3E-39 7.2E-44 230.3 21.4 188 5-198 2-191 (191)
4 cd04133 Rop_like Rop subfamily 100.0 1.8E-38 3.8E-43 223.1 22.0 174 7-180 2-175 (176)
5 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.1E-39 2E-43 232.5 20.6 176 5-180 12-190 (232)
6 cd04132 Rho4_like Rho4-like su 100.0 2.2E-38 4.8E-43 225.6 20.1 186 7-198 1-187 (187)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.5E-38 9.8E-43 222.3 20.8 177 3-179 2-181 (182)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.4E-38 3.1E-43 216.7 16.7 166 5-182 21-189 (221)
9 cd04121 Rab40 Rab40 subfamily. 100.0 4.1E-38 8.9E-43 223.5 19.6 182 4-197 4-188 (189)
10 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-37 2.6E-42 219.6 20.6 173 6-178 1-176 (178)
11 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-37 2.3E-42 225.8 20.3 174 7-180 2-178 (222)
12 cd04134 Rho3 Rho3 subfamily. 100.0 3.7E-37 7.9E-42 219.6 21.9 187 7-198 1-189 (189)
13 cd04144 Ras2 Ras2 subfamily. 100.0 1.1E-37 2.5E-42 222.4 18.1 179 8-198 1-190 (190)
14 KOG0078 GTP-binding protein SE 100.0 1.5E-37 3.2E-42 215.3 17.0 169 3-183 9-179 (207)
15 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.9E-37 1.7E-41 215.2 20.9 172 6-177 1-174 (175)
16 PTZ00369 Ras-like protein; Pro 100.0 1.1E-36 2.4E-41 217.2 20.6 182 4-197 3-188 (189)
17 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 9E-37 1.9E-41 214.4 19.2 165 5-181 1-167 (172)
18 KOG0394 Ras-related GTPase [Ge 100.0 3.3E-37 7.2E-42 208.0 16.1 170 4-182 7-182 (210)
19 KOG0080 GTPase Rab18, small G 100.0 2.8E-37 6.1E-42 203.9 15.4 165 5-181 10-177 (209)
20 cd04120 Rab12 Rab12 subfamily. 100.0 9.4E-37 2E-41 218.5 19.3 162 7-180 1-165 (202)
21 KOG0098 GTPase Rab2, small G p 100.0 1.6E-37 3.4E-42 210.0 14.0 171 1-183 1-173 (216)
22 cd01871 Rac1_like Rac1-like su 100.0 8.7E-36 1.9E-40 209.7 20.4 170 7-176 2-173 (174)
23 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.7E-35 3.7E-40 213.0 20.2 165 7-182 1-172 (201)
24 cd04110 Rab35 Rab35 subfamily. 100.0 2.1E-35 4.6E-40 212.1 20.3 166 4-181 4-170 (199)
25 KOG0079 GTP-binding protein H- 100.0 3.9E-37 8.4E-42 200.6 10.0 164 6-181 8-172 (198)
26 cd04136 Rap_like Rap-like subf 100.0 4.6E-35 1E-39 204.0 19.8 160 6-177 1-162 (163)
27 cd04122 Rab14 Rab14 subfamily. 100.0 5.4E-35 1.2E-39 204.4 19.4 162 6-179 2-165 (166)
28 smart00174 RHO Rho (Ras homolo 100.0 9.4E-35 2E-39 204.6 20.7 171 9-179 1-173 (174)
29 cd04175 Rap1 Rap1 subgroup. T 100.0 6.4E-35 1.4E-39 203.6 19.4 161 6-178 1-163 (164)
30 cd04125 RabA_like RabA-like su 100.0 1.1E-34 2.3E-39 206.8 20.1 180 7-198 1-188 (188)
31 KOG0093 GTPase Rab3, small G p 100.0 1.4E-35 2.9E-40 193.2 13.5 164 5-180 20-185 (193)
32 cd04109 Rab28 Rab28 subfamily. 100.0 1.8E-34 3.9E-39 209.6 19.4 161 7-179 1-167 (215)
33 cd04135 Tc10 TC10 subfamily. 100.0 5.8E-34 1.3E-38 200.6 21.4 172 7-178 1-174 (174)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 3.4E-34 7.3E-39 200.6 19.6 163 5-179 2-166 (167)
35 KOG0393 Ras-related small GTPa 100.0 3.1E-35 6.8E-40 204.5 13.4 179 4-182 2-183 (198)
36 cd04176 Rap2 Rap2 subgroup. T 100.0 5.2E-34 1.1E-38 198.8 19.6 160 6-177 1-162 (163)
37 cd04117 Rab15 Rab15 subfamily. 100.0 4.5E-34 9.7E-39 198.8 19.1 158 7-176 1-160 (161)
38 cd04112 Rab26 Rab26 subfamily. 100.0 4E-34 8.8E-39 204.3 19.2 163 7-181 1-166 (191)
39 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.1E-34 2E-38 199.5 20.7 169 7-175 1-171 (173)
40 PLN03071 GTP-binding nuclear p 100.0 6.9E-34 1.5E-38 206.7 20.5 163 4-180 11-174 (219)
41 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.1E-34 1.5E-38 201.2 20.0 169 7-183 1-171 (182)
42 cd04126 Rab20 Rab20 subfamily. 100.0 3E-34 6.5E-39 207.7 18.2 169 7-179 1-191 (220)
43 PF00071 Ras: Ras family; Int 100.0 3.4E-34 7.3E-39 199.5 17.7 159 8-178 1-161 (162)
44 KOG0087 GTPase Rab11/YPT3, sma 100.0 9.6E-35 2.1E-39 200.5 14.7 169 4-184 12-182 (222)
45 cd01865 Rab3 Rab3 subfamily. 100.0 8.1E-34 1.8E-38 198.3 19.6 160 7-178 2-163 (165)
46 cd04127 Rab27A Rab27a subfamil 100.0 5.3E-34 1.1E-38 201.9 18.4 163 5-179 3-178 (180)
47 smart00173 RAS Ras subfamily o 100.0 9.5E-34 2E-38 197.7 19.4 160 7-178 1-162 (164)
48 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1E-33 2.2E-38 196.8 19.5 159 6-177 1-161 (162)
49 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.1E-33 2.5E-38 197.7 19.5 161 6-178 2-164 (166)
50 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.2E-33 2.7E-38 197.0 19.3 160 6-177 2-163 (164)
51 cd04140 ARHI_like ARHI subfami 100.0 1.5E-33 3.1E-38 197.0 19.3 158 7-176 2-163 (165)
52 cd01873 RhoBTB RhoBTB subfamil 100.0 2.7E-33 5.9E-38 199.9 20.5 168 6-176 2-194 (195)
53 cd01864 Rab19 Rab19 subfamily. 100.0 2.1E-33 4.6E-38 196.2 19.0 162 5-177 2-165 (165)
54 cd04118 Rab24 Rab24 subfamily. 100.0 4.4E-33 9.5E-38 199.3 20.8 167 7-181 1-169 (193)
55 cd00877 Ran Ran (Ras-related n 100.0 4.1E-33 8.8E-38 194.8 20.2 159 7-179 1-160 (166)
56 cd04119 RJL RJL (RabJ-Like) su 100.0 2.3E-33 5E-38 196.2 18.8 160 7-178 1-167 (168)
57 cd04106 Rab23_lke Rab23-like s 100.0 1.9E-33 4E-38 195.8 18.1 158 7-176 1-161 (162)
58 cd04124 RabL2 RabL2 subfamily. 100.0 4.4E-33 9.5E-38 193.8 19.8 159 7-180 1-160 (161)
59 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-32 2.7E-37 196.0 22.1 177 7-183 2-178 (187)
60 KOG0086 GTPase Rab4, small G p 100.0 2.6E-34 5.5E-39 188.6 12.1 166 5-182 8-175 (214)
61 cd01870 RhoA_like RhoA-like su 100.0 1.2E-32 2.5E-37 194.1 21.5 171 7-177 2-174 (175)
62 cd04116 Rab9 Rab9 subfamily. 100.0 4.9E-33 1.1E-37 195.2 19.5 162 3-176 2-169 (170)
63 cd04142 RRP22 RRP22 subfamily. 100.0 8.5E-33 1.8E-37 198.0 20.8 180 7-198 1-198 (198)
64 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.7E-33 1.2E-37 194.7 18.8 162 8-179 2-166 (170)
65 cd01892 Miro2 Miro2 subfamily. 100.0 7.4E-33 1.6E-37 194.0 18.8 165 3-179 1-167 (169)
66 cd01866 Rab2 Rab2 subfamily. 100.0 1.3E-32 2.8E-37 192.8 19.7 163 5-179 3-167 (168)
67 cd04177 RSR1 RSR1 subgroup. R 100.0 1.5E-32 3.4E-37 192.3 20.1 162 6-178 1-164 (168)
68 KOG0088 GTPase Rab21, small G 100.0 3.2E-34 7E-39 189.1 10.7 165 5-181 12-178 (218)
69 PLN03108 Rab family protein; P 100.0 9.4E-33 2E-37 199.8 19.3 169 1-181 1-171 (210)
70 cd04113 Rab4 Rab4 subfamily. 100.0 9.1E-33 2E-37 192.2 18.5 158 7-176 1-160 (161)
71 cd04111 Rab39 Rab39 subfamily. 100.0 7.3E-33 1.6E-37 200.4 18.3 165 6-182 2-170 (211)
72 cd01868 Rab11_like Rab11-like. 100.0 1.5E-32 3.3E-37 191.8 19.3 161 5-177 2-164 (165)
73 cd04103 Centaurin_gamma Centau 100.0 1.8E-32 3.9E-37 189.9 19.2 155 7-176 1-157 (158)
74 cd04146 RERG_RasL11_like RERG/ 100.0 1.2E-32 2.6E-37 192.3 18.2 159 8-178 1-164 (165)
75 cd04143 Rhes_like Rhes_like su 100.0 2E-32 4.3E-37 201.7 20.0 162 7-179 1-172 (247)
76 PLN03110 Rab GTPase; Provision 100.0 1.1E-32 2.5E-37 200.1 18.5 163 5-179 11-175 (216)
77 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.3E-32 5.1E-37 191.8 19.0 161 5-177 1-168 (170)
78 smart00176 RAN Ran (Ras-relate 100.0 1.7E-32 3.7E-37 196.2 18.4 155 12-180 1-156 (200)
79 KOG0095 GTPase Rab30, small G 100.0 1.1E-33 2.4E-38 184.9 10.3 162 6-179 7-170 (213)
80 cd00157 Rho Rho (Ras homology) 100.0 7.2E-32 1.6E-36 189.3 19.9 169 7-175 1-170 (171)
81 smart00175 RAB Rab subfamily o 100.0 6.6E-32 1.4E-36 188.2 18.8 161 7-179 1-163 (164)
82 KOG0091 GTPase Rab39, small G 100.0 4E-33 8.6E-38 184.8 11.6 167 5-183 7-178 (213)
83 cd01860 Rab5_related Rab5-rela 100.0 1.1E-31 2.4E-36 187.0 19.1 160 6-177 1-162 (163)
84 cd04101 RabL4 RabL4 (Rab-like4 100.0 1E-31 2.3E-36 187.3 18.4 159 7-177 1-163 (164)
85 cd04137 RheB Rheb (Ras Homolog 100.0 9.1E-32 2E-36 190.4 18.3 177 7-198 2-180 (180)
86 cd01862 Rab7 Rab7 subfamily. 100.0 1.5E-31 3.2E-36 187.9 19.1 164 7-181 1-170 (172)
87 PLN03118 Rab family protein; P 100.0 1.8E-31 4E-36 193.4 19.9 165 5-181 13-180 (211)
88 cd01861 Rab6 Rab6 subfamily. 100.0 1.9E-31 4.1E-36 185.4 18.6 159 7-177 1-161 (161)
89 cd04139 RalA_RalB RalA/RalB su 100.0 3.1E-31 6.7E-36 184.7 19.5 160 7-178 1-162 (164)
90 cd04148 RGK RGK subfamily. Th 100.0 3.3E-31 7.2E-36 192.9 19.3 159 7-179 1-164 (221)
91 cd04123 Rab21 Rab21 subfamily. 100.0 6.3E-31 1.4E-35 182.8 19.4 159 7-177 1-161 (162)
92 cd01863 Rab18 Rab18 subfamily. 100.0 8E-31 1.7E-35 182.3 19.8 157 7-176 1-160 (161)
93 KOG0395 Ras-related GTPase [Ge 100.0 2.2E-31 4.9E-36 189.1 16.6 163 5-179 2-166 (196)
94 KOG0081 GTPase Rab27, small G 100.0 1.2E-33 2.6E-38 186.6 3.8 166 6-183 9-186 (219)
95 cd01893 Miro1 Miro1 subfamily. 100.0 1.7E-30 3.8E-35 181.6 19.0 164 7-179 1-165 (166)
96 cd04114 Rab30 Rab30 subfamily. 100.0 2.9E-30 6.3E-35 180.9 20.1 165 1-177 1-168 (169)
97 cd00876 Ras Ras family. The R 100.0 1.8E-30 3.9E-35 180.1 17.4 157 8-176 1-159 (160)
98 cd04149 Arf6 Arf6 subfamily. 100.0 6E-31 1.3E-35 184.1 15.1 155 4-175 7-167 (168)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.4E-30 3E-35 184.7 16.6 170 5-188 2-180 (183)
100 PLN00223 ADP-ribosylation fact 100.0 1.6E-30 3.4E-35 184.0 16.2 161 4-180 15-180 (181)
101 cd04147 Ras_dva Ras-dva subfam 100.0 9E-30 1.9E-34 182.8 19.0 161 8-179 1-164 (198)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.5E-31 9.8E-36 184.1 11.9 152 9-175 2-163 (164)
103 cd00154 Rab Rab family. Rab G 100.0 5.9E-30 1.3E-34 177.0 17.5 157 7-175 1-159 (159)
104 smart00177 ARF ARF-like small 100.0 7E-30 1.5E-34 179.9 17.9 157 5-178 12-174 (175)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.7E-30 1.2E-34 177.7 16.9 152 7-175 1-158 (159)
106 cd04158 ARD1 ARD1 subfamily. 100.0 7.7E-30 1.7E-34 178.8 17.6 157 8-181 1-164 (169)
107 PTZ00133 ADP-ribosylation fact 100.0 7.4E-30 1.6E-34 180.8 17.0 160 4-180 15-180 (182)
108 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.9E-32 6.3E-37 175.1 3.6 161 10-182 1-164 (192)
109 PTZ00132 GTP-binding nuclear p 100.0 7.6E-29 1.6E-33 180.2 20.4 166 2-181 5-171 (215)
110 cd04154 Arl2 Arl2 subfamily. 100.0 3.6E-29 7.9E-34 176.1 16.7 154 4-175 12-172 (173)
111 KOG0097 GTPase Rab14, small G 100.0 1.6E-29 3.5E-34 164.2 12.5 164 5-180 10-175 (215)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3E-28 6.5E-33 171.5 16.8 154 5-175 14-173 (174)
113 cd04157 Arl6 Arl6 subfamily. 100.0 1.6E-28 3.5E-33 170.8 13.6 151 8-175 1-161 (162)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 9.9E-28 2.1E-32 171.6 17.6 157 7-175 1-197 (202)
115 cd00879 Sar1 Sar1 subfamily. 100.0 8E-28 1.7E-32 171.6 16.3 158 4-177 17-190 (190)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.9E-28 4.1E-33 171.4 12.8 157 8-175 1-166 (167)
117 PF00025 Arf: ADP-ribosylation 100.0 1E-27 2.2E-32 168.8 16.1 158 3-177 11-175 (175)
118 cd04151 Arl1 Arl1 subfamily. 100.0 7.3E-28 1.6E-32 167.0 14.8 151 8-175 1-157 (158)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.4E-27 3E-32 165.8 15.2 152 8-175 1-159 (160)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.2E-27 4.8E-32 165.9 16.0 151 8-175 1-166 (167)
121 smart00178 SAR Sar1p-like memb 100.0 4.5E-27 9.7E-32 166.9 16.3 157 4-176 15-183 (184)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1E-26 2.2E-31 161.2 16.8 150 8-175 1-157 (158)
123 KOG4252 GTP-binding protein [S 100.0 2.1E-29 4.6E-34 169.7 1.9 167 5-183 19-186 (246)
124 PLN00023 GTP-binding protein; 99.9 1.6E-26 3.4E-31 173.1 16.8 146 4-154 19-191 (334)
125 PTZ00099 rab6; Provisional 99.9 3.6E-26 7.8E-31 160.7 16.4 143 29-183 3-147 (176)
126 KOG0073 GTP-binding ADP-ribosy 99.9 6.5E-26 1.4E-30 150.6 14.6 160 3-179 13-179 (185)
127 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-25 2.3E-30 157.5 16.5 155 8-178 2-168 (168)
128 cd04159 Arl10_like Arl10-like 99.9 1.2E-25 2.6E-30 155.4 16.3 151 9-175 2-158 (159)
129 KOG0070 GTP-binding ADP-ribosy 99.9 1.8E-26 3.9E-31 157.0 11.5 161 3-180 14-180 (181)
130 cd01890 LepA LepA subfamily. 99.9 8.1E-26 1.8E-30 159.8 15.1 155 8-178 2-177 (179)
131 cd04155 Arl3 Arl3 subfamily. 99.9 5.1E-25 1.1E-29 154.9 15.9 156 4-175 12-172 (173)
132 TIGR00231 small_GTP small GTP- 99.9 1.4E-24 3E-29 149.8 16.7 156 6-173 1-159 (161)
133 COG1100 GTPase SAR1 and relate 99.9 1.1E-24 2.3E-29 158.8 16.2 178 6-183 5-190 (219)
134 cd01898 Obg Obg subfamily. Th 99.9 9E-25 1.9E-29 153.1 15.2 156 8-177 2-170 (170)
135 TIGR02528 EutP ethanolamine ut 99.9 1.1E-25 2.4E-30 153.4 10.1 135 8-174 2-141 (142)
136 KOG0075 GTP-binding ADP-ribosy 99.9 8.2E-26 1.8E-30 147.5 8.4 157 5-177 19-181 (186)
137 PRK15494 era GTPase Era; Provi 99.9 5.4E-24 1.2E-28 163.7 17.8 163 1-182 47-220 (339)
138 cd04171 SelB SelB subfamily. 99.9 1.6E-24 3.6E-29 150.8 13.6 156 7-175 1-163 (164)
139 TIGR00436 era GTP-binding prot 99.9 4.2E-24 9.2E-29 160.1 16.3 157 8-182 2-168 (270)
140 PRK12299 obgE GTPase CgtA; Rev 99.9 3.8E-24 8.2E-29 163.6 16.1 159 7-179 159-329 (335)
141 KOG0071 GTP-binding ADP-ribosy 99.9 3.8E-24 8.2E-29 138.7 13.0 158 4-178 15-178 (180)
142 KOG3883 Ras family small GTPas 99.9 1.6E-23 3.4E-28 137.8 16.0 168 5-184 8-181 (198)
143 cd01878 HflX HflX subfamily. 99.9 4E-24 8.7E-29 154.2 14.6 154 5-177 40-204 (204)
144 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8E-24 1.7E-28 148.0 14.5 158 8-178 2-166 (168)
145 cd01894 EngA1 EngA1 subfamily. 99.9 9.7E-24 2.1E-28 145.8 14.1 147 10-177 1-157 (157)
146 cd00882 Ras_like_GTPase Ras-li 99.9 2.2E-23 4.8E-28 142.6 15.6 152 11-174 1-156 (157)
147 cd01879 FeoB Ferrous iron tran 99.9 3.1E-23 6.6E-28 143.5 15.6 147 11-177 1-156 (158)
148 PRK03003 GTP-binding protein D 99.9 1.6E-23 3.5E-28 167.9 15.4 161 5-179 210-383 (472)
149 cd01891 TypA_BipA TypA (tyrosi 99.9 4.1E-23 8.8E-28 147.8 14.7 147 7-167 3-171 (194)
150 PRK04213 GTP-binding protein; 99.9 8.9E-24 1.9E-28 152.1 10.7 156 5-181 8-195 (201)
151 PF08477 Miro: Miro-like prote 99.9 2.8E-23 6.1E-28 137.3 12.2 114 8-121 1-119 (119)
152 PRK03003 GTP-binding protein D 99.9 3.4E-23 7.4E-28 166.1 14.8 154 5-179 37-200 (472)
153 TIGR02729 Obg_CgtA Obg family 99.9 1E-22 2.3E-27 155.6 16.0 158 6-177 157-328 (329)
154 PF02421 FeoB_N: Ferrous iron 99.9 3.9E-23 8.4E-28 140.7 12.0 147 7-173 1-156 (156)
155 TIGR03156 GTP_HflX GTP-binding 99.9 8.7E-23 1.9E-27 157.3 15.4 152 5-176 188-350 (351)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.1E-22 2.4E-27 161.0 15.9 150 5-179 202-361 (442)
157 TIGR03594 GTPase_EngA ribosome 99.9 3E-22 6.4E-27 159.5 18.0 158 5-179 171-345 (429)
158 cd00881 GTP_translation_factor 99.9 1.6E-22 3.5E-27 143.9 14.7 157 8-178 1-187 (189)
159 cd01881 Obg_like The Obg-like 99.9 1E-22 2.2E-27 143.3 13.5 152 11-176 1-175 (176)
160 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.9E-22 6.3E-27 138.3 15.5 145 7-177 2-156 (157)
161 PRK05291 trmE tRNA modificatio 99.9 1.2E-22 2.7E-27 161.4 14.9 148 5-179 214-371 (449)
162 cd01895 EngA2 EngA2 subfamily. 99.9 8.3E-22 1.8E-26 138.1 17.4 155 6-176 2-173 (174)
163 cd04163 Era Era subfamily. Er 99.9 2.2E-22 4.8E-27 140.1 14.3 156 6-177 3-168 (168)
164 TIGR00487 IF-2 translation ini 99.9 2.7E-22 5.9E-27 163.1 16.8 153 5-175 86-247 (587)
165 TIGR01393 lepA GTP-binding pro 99.9 6.7E-22 1.4E-26 161.5 16.2 160 6-181 3-183 (595)
166 PRK15467 ethanolamine utilizat 99.9 2.9E-22 6.2E-27 138.7 11.9 142 8-180 3-149 (158)
167 cd01889 SelB_euk SelB subfamil 99.9 3E-22 6.4E-27 143.1 12.2 161 7-180 1-188 (192)
168 PRK00089 era GTPase Era; Revie 99.9 1.3E-21 2.9E-26 148.4 16.1 161 5-181 4-174 (292)
169 PRK00093 GTP-binding protein D 99.9 6.7E-22 1.5E-26 157.7 15.1 150 7-177 2-161 (435)
170 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.6E-22 3.5E-27 137.7 9.3 161 6-180 10-171 (216)
171 TIGR03594 GTPase_EngA ribosome 99.9 7.1E-22 1.5E-26 157.4 14.5 152 8-180 1-162 (429)
172 CHL00189 infB translation init 99.9 1.1E-21 2.3E-26 162.1 15.3 161 4-177 242-409 (742)
173 COG1159 Era GTPase [General fu 99.9 1.9E-21 4.2E-26 142.3 14.7 165 2-182 2-176 (298)
174 PRK00454 engB GTP-binding prot 99.9 2.2E-21 4.7E-26 139.0 14.8 162 3-179 21-195 (196)
175 PRK12297 obgE GTPase CgtA; Rev 99.9 3.5E-21 7.5E-26 150.9 16.8 155 8-180 160-329 (424)
176 PF00009 GTP_EFTU: Elongation 99.9 2.2E-21 4.8E-26 138.2 14.4 161 5-178 2-187 (188)
177 TIGR03598 GTPase_YsxC ribosome 99.9 8.2E-22 1.8E-26 139.3 12.1 152 1-167 13-179 (179)
178 PRK12296 obgE GTPase CgtA; Rev 99.9 4.9E-21 1.1E-25 151.9 16.5 161 6-181 159-343 (500)
179 PRK05306 infB translation init 99.9 5E-21 1.1E-25 159.4 17.2 158 4-176 288-450 (787)
180 cd01888 eIF2_gamma eIF2-gamma 99.9 2.5E-21 5.3E-26 139.4 13.2 116 54-180 83-201 (203)
181 PRK11058 GTPase HflX; Provisio 99.9 7E-21 1.5E-25 150.0 16.6 156 7-179 198-363 (426)
182 PRK09518 bifunctional cytidyla 99.9 2.6E-21 5.6E-26 161.9 14.4 158 4-179 448-622 (712)
183 PRK00093 GTP-binding protein D 99.9 1.1E-20 2.3E-25 150.8 15.7 160 5-178 172-344 (435)
184 TIGR00475 selB selenocysteine- 99.9 8.8E-21 1.9E-25 154.9 15.1 161 7-181 1-169 (581)
185 PRK05433 GTP-binding protein L 99.9 1.5E-20 3.3E-25 153.8 16.1 164 2-181 3-187 (600)
186 TIGR00491 aIF-2 translation in 99.9 8.5E-21 1.8E-25 154.3 14.0 169 5-177 3-215 (590)
187 PRK09518 bifunctional cytidyla 99.9 1.6E-20 3.5E-25 157.1 16.0 153 6-179 275-437 (712)
188 PRK12298 obgE GTPase CgtA; Rev 99.9 2.4E-20 5.2E-25 145.4 15.9 160 8-180 161-335 (390)
189 KOG1673 Ras GTPases [General f 99.9 1.2E-20 2.6E-25 124.6 11.5 167 6-180 20-188 (205)
190 COG1160 Predicted GTPases [Gen 99.9 1E-20 2.2E-25 145.8 12.9 151 7-178 4-165 (444)
191 KOG0076 GTP-binding ADP-ribosy 99.9 1.1E-21 2.3E-26 131.9 6.6 164 1-180 12-189 (197)
192 cd01896 DRG The developmentall 99.9 1.1E-19 2.4E-24 133.2 17.7 150 8-178 2-226 (233)
193 PRK12317 elongation factor 1-a 99.9 8.9E-21 1.9E-25 150.6 12.9 161 1-170 1-197 (425)
194 KOG0074 GTP-binding ADP-ribosy 99.9 1.1E-20 2.5E-25 122.8 10.8 159 4-178 15-179 (185)
195 COG2229 Predicted GTPase [Gene 99.9 6E-20 1.3E-24 125.1 14.5 156 3-176 7-176 (187)
196 cd04105 SR_beta Signal recogni 99.9 1.6E-20 3.5E-25 135.1 12.2 118 8-125 2-124 (203)
197 COG1160 Predicted GTPases [Gen 99.8 4E-20 8.7E-25 142.5 14.8 160 5-180 177-353 (444)
198 cd00880 Era_like Era (E. coli 99.8 3.6E-20 7.9E-25 127.8 13.2 151 11-176 1-162 (163)
199 TIGR00437 feoB ferrous iron tr 99.8 3.6E-20 7.9E-25 151.5 14.8 145 13-177 1-154 (591)
200 KOG0072 GTP-binding ADP-ribosy 99.8 5.3E-21 1.1E-25 124.7 7.0 159 4-179 16-180 (182)
201 KOG4423 GTP-binding protein-li 99.8 2.5E-22 5.4E-27 136.4 -0.8 167 6-182 25-198 (229)
202 PRK09554 feoB ferrous iron tra 99.8 3.6E-19 7.7E-24 148.9 17.6 152 6-177 3-167 (772)
203 PF10662 PduV-EutP: Ethanolami 99.8 8E-20 1.7E-24 121.8 10.6 136 8-174 3-142 (143)
204 TIGR00483 EF-1_alpha translati 99.8 7.3E-20 1.6E-24 145.4 12.0 157 3-168 4-197 (426)
205 COG0486 ThdF Predicted GTPase 99.8 2.5E-19 5.4E-24 138.5 13.6 153 5-180 216-378 (454)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 2.7E-19 5.8E-24 146.1 13.6 158 8-181 3-194 (594)
207 PRK10218 GTP-binding protein; 99.8 6.8E-19 1.5E-23 143.7 15.8 163 5-181 4-198 (607)
208 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.1E-19 4.5E-24 129.9 10.1 151 8-169 1-185 (208)
209 KOG1423 Ras-like GTPase ERA [C 99.8 2.2E-19 4.9E-24 131.4 10.2 175 4-183 70-276 (379)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-18 2.5E-23 124.4 13.6 150 6-166 2-171 (195)
211 cd04168 TetM_like Tet(M)-like 99.8 9.4E-19 2E-23 128.5 13.4 168 8-179 1-236 (237)
212 cd01876 YihA_EngB The YihA (En 99.8 7.9E-19 1.7E-23 122.4 12.4 155 8-177 1-170 (170)
213 PRK04004 translation initiatio 99.8 1E-18 2.3E-23 142.6 14.9 165 4-175 4-215 (586)
214 cd04167 Snu114p Snu114p subfam 99.8 4.9E-19 1.1E-23 128.5 11.6 112 8-123 2-136 (213)
215 PRK10512 selenocysteinyl-tRNA- 99.8 1.4E-18 3E-23 142.6 15.1 158 8-179 2-167 (614)
216 KOG1707 Predicted Ras related/ 99.8 1.5E-19 3.2E-24 142.1 8.9 165 4-180 7-177 (625)
217 TIGR03680 eif2g_arch translati 99.8 7.7E-19 1.7E-23 138.5 12.9 163 5-179 3-197 (406)
218 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3E-19 6.5E-24 129.4 9.4 167 8-182 1-180 (232)
219 cd04165 GTPBP1_like GTPBP1-lik 99.8 5E-18 1.1E-22 123.6 15.0 154 8-175 1-220 (224)
220 PRK04000 translation initiatio 99.8 2.5E-18 5.4E-23 135.6 13.4 165 4-179 7-202 (411)
221 cd01883 EF1_alpha Eukaryotic e 99.8 2.2E-18 4.8E-23 125.4 10.2 152 8-167 1-194 (219)
222 cd04104 p47_IIGP_like p47 (47- 99.8 1.1E-17 2.4E-22 119.9 13.4 171 6-182 1-188 (197)
223 PRK12736 elongation factor Tu; 99.8 1.2E-17 2.6E-22 131.3 14.4 165 4-179 10-202 (394)
224 TIGR00485 EF-Tu translation el 99.8 1.5E-17 3.4E-22 130.8 13.8 149 3-164 9-179 (394)
225 cd01885 EF2 EF2 (for archaea a 99.8 2E-17 4.4E-22 119.9 12.7 112 8-123 2-138 (222)
226 PRK12735 elongation factor Tu; 99.8 3E-17 6.4E-22 129.2 14.3 164 4-178 10-203 (396)
227 COG0532 InfB Translation initi 99.8 3.9E-17 8.4E-22 128.1 14.7 159 4-179 3-171 (509)
228 KOG1489 Predicted GTP-binding 99.7 7.1E-17 1.5E-21 118.9 14.2 156 6-176 196-365 (366)
229 CHL00071 tufA elongation facto 99.7 4.4E-17 9.6E-22 128.7 13.6 152 3-165 9-180 (409)
230 COG0370 FeoB Fe2+ transport sy 99.7 5E-17 1.1E-21 130.8 13.4 156 6-181 3-167 (653)
231 cd01886 EF-G Elongation factor 99.7 4.4E-17 9.5E-22 121.7 11.9 140 8-162 1-159 (270)
232 cd04170 EF-G_bact Elongation f 99.7 1.7E-16 3.6E-21 119.0 15.0 112 8-125 1-131 (268)
233 COG0218 Predicted GTPase [Gene 99.7 1.8E-16 4E-21 110.4 13.2 160 3-179 21-198 (200)
234 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-16 2.3E-21 119.5 12.3 115 7-125 3-138 (267)
235 COG1163 DRG Predicted GTPase [ 99.7 2.6E-15 5.6E-20 111.2 17.0 152 6-178 63-289 (365)
236 PRK00049 elongation factor Tu; 99.7 4.9E-16 1.1E-20 122.2 14.1 162 4-178 10-203 (396)
237 PRK00741 prfC peptide chain re 99.7 4.3E-16 9.4E-21 125.9 14.1 116 5-124 9-145 (526)
238 TIGR02034 CysN sulfate adenyly 99.7 1.1E-16 2.4E-21 126.2 10.4 153 7-168 1-187 (406)
239 PRK05124 cysN sulfate adenylyl 99.7 4.1E-16 8.9E-21 124.9 13.3 158 3-169 24-216 (474)
240 PRK13351 elongation factor G; 99.7 3.2E-16 7E-21 131.3 12.8 117 3-125 5-140 (687)
241 PLN03127 Elongation factor Tu; 99.7 1.3E-15 2.8E-20 121.1 14.9 162 4-178 59-252 (447)
242 PLN00043 elongation factor 1-a 99.7 4.5E-16 9.8E-21 123.8 12.2 159 3-168 4-203 (447)
243 PLN03126 Elongation factor Tu; 99.7 9.2E-16 2E-20 122.6 13.8 150 4-164 79-248 (478)
244 COG3596 Predicted GTPase [Gene 99.7 2.2E-16 4.7E-21 114.6 9.1 172 3-180 36-224 (296)
245 PTZ00141 elongation factor 1- 99.7 4.4E-16 9.6E-21 123.9 11.4 159 3-168 4-203 (446)
246 PF09439 SRPRB: Signal recogni 99.7 9.3E-17 2E-21 111.8 6.1 117 6-125 3-127 (181)
247 KOG0462 Elongation factor-type 99.7 1.9E-15 4.1E-20 118.6 13.7 166 4-183 58-240 (650)
248 cd01850 CDC_Septin CDC/Septin. 99.7 3.3E-15 7.1E-20 112.1 14.6 144 5-161 3-185 (276)
249 COG2262 HflX GTPases [General 99.7 2.6E-15 5.5E-20 114.6 13.9 157 5-180 191-358 (411)
250 cd01899 Ygr210 Ygr210 subfamil 99.7 4.7E-15 1E-19 112.8 15.3 80 9-88 1-110 (318)
251 PRK05506 bifunctional sulfate 99.7 6.9E-16 1.5E-20 128.1 11.1 156 4-168 22-211 (632)
252 PF01926 MMR_HSR1: 50S ribosom 99.7 2.5E-15 5.3E-20 98.8 11.3 105 8-119 1-116 (116)
253 COG0536 Obg Predicted GTPase [ 99.6 1.1E-14 2.3E-19 108.7 14.5 162 8-181 161-336 (369)
254 PTZ00327 eukaryotic translatio 99.6 3.9E-15 8.4E-20 118.3 12.9 166 4-180 32-235 (460)
255 COG1084 Predicted GTPase [Gene 99.6 4E-15 8.6E-20 110.5 11.6 160 5-180 167-338 (346)
256 TIGR00484 EF-G translation elo 99.6 4.8E-15 1E-19 124.1 13.5 115 5-125 9-142 (689)
257 KOG1145 Mitochondrial translat 99.6 1.7E-14 3.8E-19 113.3 15.1 155 4-177 151-315 (683)
258 KOG1191 Mitochondrial GTPase [ 99.6 3.1E-15 6.8E-20 116.1 10.6 167 5-180 267-452 (531)
259 KOG0077 Vesicle coat complex C 99.6 1.3E-15 2.7E-20 102.1 7.1 156 5-176 19-191 (193)
260 PRK09866 hypothetical protein; 99.6 1.9E-14 4E-19 116.1 14.4 111 54-176 230-351 (741)
261 COG4917 EutP Ethanolamine util 99.6 2E-15 4.2E-20 96.6 6.6 138 8-176 3-144 (148)
262 TIGR00503 prfC peptide chain r 99.6 9.5E-15 2.1E-19 118.2 11.7 117 4-124 9-146 (527)
263 COG0481 LepA Membrane GTPase L 99.6 2.8E-14 6E-19 110.5 13.2 163 3-182 6-190 (603)
264 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 8.2E-14 1.8E-18 99.8 14.7 163 7-179 1-185 (196)
265 KOG3905 Dynein light intermedi 99.6 5.1E-14 1.1E-18 104.4 12.8 172 7-179 53-291 (473)
266 PRK12739 elongation factor G; 99.6 2.6E-14 5.6E-19 119.8 12.2 116 4-125 6-140 (691)
267 cd00066 G-alpha G protein alph 99.6 1.1E-13 2.4E-18 105.9 14.6 127 53-180 160-313 (317)
268 KOG1707 Predicted Ras related/ 99.6 1.9E-13 4.2E-18 108.1 15.1 165 2-181 421-586 (625)
269 PRK14845 translation initiatio 99.6 5.7E-14 1.2E-18 120.2 13.1 156 18-177 473-672 (1049)
270 COG5256 TEF1 Translation elong 99.6 2.5E-14 5.4E-19 109.3 9.6 160 2-168 3-201 (428)
271 PRK00007 elongation factor G; 99.6 5.9E-14 1.3E-18 117.6 12.5 116 4-125 8-142 (693)
272 PRK12740 elongation factor G; 99.6 1.3E-13 2.8E-18 115.6 14.4 108 12-125 1-127 (668)
273 PRK09602 translation-associate 99.5 3.4E-13 7.4E-18 105.6 15.4 83 6-88 1-113 (396)
274 KOG1532 GTPase XAB1, interacts 99.5 1.1E-13 2.4E-18 100.4 10.3 125 53-179 115-265 (366)
275 KOG0090 Signal recognition par 99.5 4.5E-14 9.8E-19 98.7 7.6 165 7-176 39-237 (238)
276 KOG1144 Translation initiation 99.5 3.1E-14 6.7E-19 115.2 7.4 172 5-180 474-689 (1064)
277 smart00275 G_alpha G protein a 99.5 8.1E-13 1.7E-17 101.9 14.0 125 54-180 184-336 (342)
278 PF05783 DLIC: Dynein light in 99.5 6.6E-13 1.4E-17 105.5 13.7 173 6-182 25-268 (472)
279 TIGR00157 ribosome small subun 99.5 1E-12 2.2E-17 97.1 13.1 96 65-175 24-120 (245)
280 TIGR00490 aEF-2 translation el 99.5 2.5E-13 5.3E-18 114.3 11.0 116 5-124 18-152 (720)
281 PRK13768 GTPase; Provisional 99.5 2.8E-13 6E-18 100.6 9.3 123 55-178 98-247 (253)
282 KOG1490 GTP-binding protein CR 99.5 1.8E-13 3.8E-18 106.7 7.6 164 5-181 167-344 (620)
283 cd01853 Toc34_like Toc34-like 99.5 2E-12 4.4E-17 95.4 12.3 120 4-127 29-166 (249)
284 TIGR00101 ureG urease accessor 99.5 2.5E-12 5.5E-17 92.0 12.5 102 54-178 92-196 (199)
285 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.9E-12 4E-17 97.2 12.1 119 5-126 37-169 (313)
286 COG2895 CysN GTPases - Sulfate 99.4 1.2E-12 2.6E-17 98.2 10.6 158 1-167 1-192 (431)
287 PF03029 ATP_bind_1: Conserved 99.4 7.9E-14 1.7E-18 102.3 3.6 121 55-177 92-236 (238)
288 KOG3887 Predicted small GTPase 99.4 7E-13 1.5E-17 94.7 7.7 172 7-181 28-205 (347)
289 PF05049 IIGP: Interferon-indu 99.4 1.5E-12 3.3E-17 100.1 9.4 166 5-182 34-222 (376)
290 KOG3886 GTP-binding protein [S 99.4 3.3E-13 7.2E-18 95.6 4.9 166 6-180 4-180 (295)
291 cd01882 BMS1 Bms1. Bms1 is an 99.4 9.6E-12 2.1E-16 90.9 12.3 142 5-164 38-182 (225)
292 TIGR02836 spore_IV_A stage IV 99.4 1.3E-11 2.7E-16 95.4 13.0 155 6-175 17-234 (492)
293 PRK07560 elongation factor EF- 99.4 4.1E-12 8.8E-17 107.2 11.1 116 5-124 19-153 (731)
294 PLN00116 translation elongatio 99.4 1.2E-12 2.7E-17 111.7 8.0 116 4-123 17-163 (843)
295 COG1217 TypA Predicted membran 99.4 1.8E-11 3.9E-16 95.0 13.5 161 7-181 6-198 (603)
296 PRK09435 membrane ATPase/prote 99.4 1.3E-11 2.9E-16 94.3 11.6 108 53-179 148-261 (332)
297 KOG0461 Selenocysteine-specifi 99.4 1.6E-11 3.6E-16 92.0 11.6 170 3-184 4-199 (522)
298 PTZ00416 elongation factor 2; 99.3 5.8E-12 1.2E-16 107.5 9.9 116 4-123 17-157 (836)
299 smart00010 small_GTPase Small 99.3 2.7E-11 5.8E-16 80.1 11.1 113 7-167 1-115 (124)
300 TIGR00073 hypB hydrogenase acc 99.3 3.9E-11 8.4E-16 86.7 12.6 152 4-176 20-205 (207)
301 PF04548 AIG1: AIG1 family; I 99.3 4.3E-11 9.4E-16 86.7 12.7 162 7-181 1-189 (212)
302 PTZ00258 GTP-binding protein; 99.3 1.1E-10 2.4E-15 90.8 14.5 84 5-88 20-126 (390)
303 KOG0082 G-protein alpha subuni 99.3 1.6E-11 3.4E-16 93.5 8.7 126 54-181 195-347 (354)
304 KOG1486 GTP-binding protein DR 99.3 3.2E-10 6.9E-15 81.8 14.8 154 5-178 61-288 (364)
305 PF00735 Septin: Septin; Inte 99.3 1.6E-10 3.5E-15 86.8 13.3 116 6-125 4-157 (281)
306 PF00350 Dynamin_N: Dynamin fa 99.2 4.2E-11 9.1E-16 83.6 8.4 63 55-120 102-168 (168)
307 PRK09601 GTP-binding protein Y 99.2 8.3E-10 1.8E-14 85.1 15.7 82 7-88 3-107 (364)
308 KOG0458 Elongation factor 1 al 99.2 5.1E-11 1.1E-15 94.7 9.1 158 5-169 176-373 (603)
309 COG4108 PrfC Peptide chain rel 99.2 1.7E-10 3.8E-15 89.0 11.2 116 6-125 12-148 (528)
310 KOG0705 GTPase-activating prot 99.2 3.3E-11 7.2E-16 95.1 7.0 161 5-180 29-191 (749)
311 PF00503 G-alpha: G-protein al 99.2 2.5E-10 5.5E-15 90.0 10.6 123 54-176 236-388 (389)
312 TIGR00750 lao LAO/AO transport 99.2 3.2E-10 6.9E-15 86.4 10.5 105 53-178 126-238 (300)
313 COG5257 GCD11 Translation init 99.2 3.7E-10 8E-15 84.1 10.0 168 5-183 9-207 (415)
314 COG3276 SelB Selenocysteine-sp 99.2 5.1E-10 1.1E-14 86.6 10.9 155 8-178 2-162 (447)
315 KOG0468 U5 snRNP-specific prot 99.1 1.8E-10 3.9E-15 92.9 7.7 117 3-123 125-262 (971)
316 COG0480 FusA Translation elong 99.1 4.2E-10 9.1E-15 93.5 9.4 118 3-125 7-143 (697)
317 cd01900 YchF YchF subfamily. 99.1 1.5E-09 3.3E-14 81.0 11.5 80 9-88 1-103 (274)
318 KOG1143 Predicted translation 99.1 1.3E-09 2.8E-14 82.8 10.9 169 6-179 167-388 (591)
319 PRK00098 GTPase RsgA; Reviewed 99.1 6.7E-10 1.5E-14 84.5 9.5 87 75-175 78-164 (298)
320 cd01859 MJ1464 MJ1464. This f 99.1 4.1E-10 8.9E-15 77.7 6.6 94 68-178 3-96 (156)
321 cd01855 YqeH YqeH. YqeH is an 99.1 6.3E-10 1.4E-14 79.3 7.4 95 67-178 24-125 (190)
322 smart00053 DYNc Dynamin, GTPas 99.1 2.1E-09 4.6E-14 78.8 10.0 69 54-125 125-207 (240)
323 COG0012 Predicted GTPase, prob 99.0 1.2E-08 2.6E-13 78.0 14.0 83 6-88 2-108 (372)
324 COG0378 HypB Ni2+-binding GTPa 99.0 2.1E-09 4.6E-14 74.9 9.1 78 80-177 120-200 (202)
325 PRK10463 hydrogenase nickel in 99.0 2.3E-09 5E-14 80.2 9.6 57 110-176 230-287 (290)
326 cd01854 YjeQ_engC YjeQ/EngC. 99.0 7.8E-09 1.7E-13 78.3 12.6 88 72-175 73-161 (287)
327 TIGR00993 3a0901s04IAP86 chlor 99.0 3.3E-09 7.2E-14 86.6 10.7 119 5-126 117-252 (763)
328 KOG2486 Predicted GTPase [Gene 99.0 7.1E-10 1.5E-14 81.0 6.0 167 4-177 134-315 (320)
329 PRK12289 GTPase RsgA; Reviewed 99.0 3.2E-09 7E-14 82.1 10.0 94 67-176 79-173 (352)
330 COG0050 TufB GTPases - transla 99.0 5.9E-09 1.3E-13 76.9 10.5 166 5-183 11-206 (394)
331 COG1703 ArgK Putative periplas 98.9 1.3E-08 2.8E-13 75.5 10.3 105 53-179 143-255 (323)
332 COG5258 GTPBP1 GTPase [General 98.9 2.7E-09 5.9E-14 81.3 6.3 172 4-180 115-340 (527)
333 COG5019 CDC3 Septin family pro 98.9 2.2E-08 4.8E-13 76.1 10.9 117 5-125 22-177 (373)
334 PRK12288 GTPase RsgA; Reviewed 98.9 1.4E-08 3E-13 78.6 9.9 89 75-176 118-206 (347)
335 PF03308 ArgK: ArgK protein; 98.9 2.3E-09 5.1E-14 78.2 5.1 103 54-178 122-230 (266)
336 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.5E-08 3.2E-13 70.1 8.2 90 74-177 5-94 (157)
337 TIGR03597 GTPase_YqeH ribosome 98.9 7.7E-09 1.7E-13 80.7 7.1 96 64-176 50-151 (360)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.4E-08 3.1E-13 68.9 6.5 54 8-64 85-138 (141)
339 KOG2655 Septin family protein 98.8 1.4E-07 3E-12 72.3 12.2 116 6-125 21-173 (366)
340 KOG1954 Endocytosis/signaling 98.8 2E-08 4.3E-13 76.4 7.5 117 7-127 59-228 (532)
341 KOG0463 GTP-binding protein GP 98.8 3.4E-08 7.4E-13 75.4 8.4 166 6-177 133-356 (641)
342 KOG1487 GTP-binding protein DR 98.8 5.2E-08 1.1E-12 70.8 9.0 151 7-177 60-280 (358)
343 KOG1547 Septin CDC10 and relat 98.8 7.6E-08 1.7E-12 69.2 9.3 115 5-123 45-197 (336)
344 cd01849 YlqF_related_GTPase Yl 98.8 3.8E-08 8.3E-13 67.8 7.2 83 79-177 1-84 (155)
345 KOG0410 Predicted GTP binding 98.7 2.1E-08 4.5E-13 75.0 3.9 150 6-179 178-342 (410)
346 cd01856 YlqF YlqF. Proteins o 98.7 1E-07 2.2E-12 66.8 6.9 88 72-178 14-101 (171)
347 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.5E-08 2.1E-12 66.0 6.6 54 5-63 101-156 (157)
348 cd04178 Nucleostemin_like Nucl 98.6 9.6E-08 2.1E-12 66.9 6.6 55 5-64 116-172 (172)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.3E-07 2.8E-12 64.2 6.8 77 74-165 8-84 (141)
350 KOG0448 Mitofusin 1 GTPase, in 98.6 7.9E-07 1.7E-11 72.6 11.3 119 4-126 107-277 (749)
351 cd01856 YlqF YlqF. Proteins o 98.6 1.5E-07 3.3E-12 65.9 6.5 56 5-64 114-170 (171)
352 PF09547 Spore_IV_A: Stage IV 98.6 3.7E-06 8.1E-11 65.6 13.8 154 6-174 17-233 (492)
353 TIGR03596 GTPase_YlqF ribosome 98.6 2.7E-07 5.8E-12 69.6 7.2 55 5-64 117-173 (276)
354 cd01859 MJ1464 MJ1464. This f 98.6 3E-07 6.6E-12 63.4 6.9 56 5-63 100-155 (156)
355 TIGR00092 GTP-binding protein 98.5 5.3E-07 1.1E-11 69.9 8.5 82 7-88 3-108 (368)
356 TIGR03596 GTPase_YlqF ribosome 98.5 5.5E-07 1.2E-11 67.9 8.0 89 72-179 16-104 (276)
357 COG5192 BMS1 GTP-binding prote 98.5 1.4E-06 3E-11 70.1 10.2 111 5-126 68-179 (1077)
358 PRK09563 rbgA GTPase YlqF; Rev 98.5 5.3E-07 1.2E-11 68.4 7.6 55 5-64 120-176 (287)
359 KOG0465 Mitochondrial elongati 98.5 6.6E-07 1.4E-11 72.2 7.7 116 6-125 39-171 (721)
360 KOG0467 Translation elongation 98.5 4.8E-07 1E-11 74.6 6.9 116 3-122 6-136 (887)
361 KOG0460 Mitochondrial translat 98.5 1.6E-06 3.4E-11 65.6 9.0 147 5-161 53-218 (449)
362 PRK13796 GTPase YqeH; Provisio 98.5 1.5E-06 3.3E-11 68.0 9.3 84 76-176 67-157 (365)
363 PRK01889 GTPase RsgA; Reviewed 98.4 1.9E-06 4.1E-11 67.3 9.0 84 75-174 110-193 (356)
364 PRK09563 rbgA GTPase YlqF; Rev 98.4 9.3E-07 2E-11 67.1 7.1 89 72-179 19-107 (287)
365 cd01855 YqeH YqeH. YqeH is an 98.4 5E-07 1.1E-11 64.4 5.4 25 6-30 127-151 (190)
366 KOG0085 G protein subunit Galp 98.4 2.3E-07 5E-12 66.5 3.5 126 52-179 197-350 (359)
367 cd01849 YlqF_related_GTPase Yl 98.4 1.3E-06 2.8E-11 60.2 7.0 54 5-63 99-154 (155)
368 PF03193 DUF258: Protein of un 98.4 3.3E-07 7.1E-12 62.9 3.6 59 7-68 36-101 (161)
369 COG1161 Predicted GTPases [Gen 98.4 9.3E-07 2E-11 68.0 6.4 56 5-64 131-187 (322)
370 KOG0099 G protein subunit Galp 98.4 1.6E-06 3.4E-11 63.4 6.9 71 54-125 202-284 (379)
371 KOG0447 Dynamin-like GTP bindi 98.3 6.4E-06 1.4E-10 66.1 9.9 84 54-149 412-508 (980)
372 KOG1491 Predicted GTP-binding 98.3 2.2E-06 4.8E-11 64.8 6.9 84 5-88 19-125 (391)
373 PRK12288 GTPase RsgA; Reviewed 98.3 1.1E-06 2.4E-11 68.1 5.5 22 9-30 208-229 (347)
374 cd03112 CobW_like The function 98.3 3.5E-06 7.7E-11 58.2 7.4 65 53-122 86-158 (158)
375 PRK14974 cell division protein 98.3 1.7E-06 3.7E-11 66.7 6.3 94 54-170 223-322 (336)
376 TIGR03348 VI_IcmF type VI secr 98.3 7E-06 1.5E-10 73.2 10.5 113 9-125 114-258 (1169)
377 KOG0466 Translation initiation 98.3 5.1E-07 1.1E-11 67.3 2.8 113 55-182 126-245 (466)
378 PRK10416 signal recognition pa 98.3 1.3E-05 2.9E-10 61.5 10.2 95 53-170 196-302 (318)
379 cd01851 GBP Guanylate-binding 98.3 7.8E-06 1.7E-10 59.8 8.5 87 5-91 6-105 (224)
380 COG1162 Predicted GTPases [Gen 98.2 2E-05 4.4E-10 59.2 10.3 99 66-177 68-166 (301)
381 PF06858 NOG1: Nucleolar GTP-b 98.2 6.5E-06 1.4E-10 45.9 5.6 43 78-121 14-58 (58)
382 TIGR00064 ftsY signal recognit 98.2 7.8E-06 1.7E-10 61.5 8.0 95 53-170 154-260 (272)
383 COG1618 Predicted nucleotide k 98.2 7.6E-05 1.6E-09 50.9 11.4 147 4-178 3-176 (179)
384 PRK12289 GTPase RsgA; Reviewed 98.1 5.8E-06 1.3E-10 64.2 6.1 22 9-30 175-196 (352)
385 KOG3859 Septins (P-loop GTPase 98.1 1.1E-05 2.4E-10 59.6 6.9 59 5-63 41-104 (406)
386 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.5E-06 9.8E-11 63.3 5.1 24 7-30 162-185 (287)
387 TIGR00157 ribosome small subun 98.1 4.9E-06 1.1E-10 61.7 4.9 22 8-29 122-143 (245)
388 TIGR03597 GTPase_YqeH ribosome 98.1 7.1E-06 1.5E-10 64.2 5.5 23 7-29 155-177 (360)
389 COG1162 Predicted GTPases [Gen 98.1 9.2E-06 2E-10 61.0 5.7 59 8-69 166-231 (301)
390 PRK13695 putative NTPase; Prov 98.0 0.00032 6.9E-09 49.2 12.4 22 7-28 1-22 (174)
391 PRK13796 GTPase YqeH; Provisio 98.0 1.1E-05 2.5E-10 63.2 5.1 23 7-29 161-183 (365)
392 PRK00098 GTPase RsgA; Reviewed 98.0 1.5E-05 3.3E-10 60.8 5.3 23 8-30 166-188 (298)
393 KOG1534 Putative transcription 98.0 5.5E-05 1.2E-09 53.8 7.4 122 56-178 100-251 (273)
394 TIGR01425 SRP54_euk signal rec 97.9 0.00013 2.8E-09 58.0 10.4 67 53-125 182-254 (429)
395 KOG1533 Predicted GTPase [Gene 97.9 1.3E-05 2.9E-10 57.7 4.3 119 54-175 97-250 (290)
396 KOG0464 Elongation factor G [T 97.9 3.4E-06 7.4E-11 65.5 0.9 116 6-125 37-169 (753)
397 KOG0469 Elongation factor 2 [T 97.9 5.8E-05 1.2E-09 60.3 7.4 115 5-123 18-163 (842)
398 PRK00771 signal recognition pa 97.9 0.00011 2.4E-09 58.8 8.9 65 54-125 176-247 (437)
399 PF11111 CENP-M: Centromere pr 97.9 0.0024 5.2E-08 44.2 14.0 143 1-177 10-152 (176)
400 KOG4273 Uncharacterized conser 97.9 0.00074 1.6E-08 49.4 12.0 167 7-177 5-221 (418)
401 KOG0459 Polypeptide release fa 97.8 5.8E-05 1.2E-09 58.6 6.2 163 4-170 77-278 (501)
402 KOG3929 Uncharacterized conser 97.8 2.5E-06 5.4E-11 62.2 -1.4 151 3-162 42-236 (363)
403 PRK10867 signal recognition pa 97.8 0.0003 6.4E-09 56.3 9.8 80 54-153 184-269 (433)
404 KOG1424 Predicted GTP-binding 97.8 3.7E-05 8E-10 61.3 4.7 55 6-64 314-369 (562)
405 PRK14722 flhF flagellar biosyn 97.7 0.00038 8.3E-09 54.5 9.5 22 7-28 138-159 (374)
406 PF03266 NTPase_1: NTPase; In 97.7 0.00019 4.1E-09 50.1 7.0 22 8-29 1-22 (168)
407 KOG2485 Conserved ATP/GTP bind 97.7 4.6E-05 1E-09 57.2 4.0 60 4-64 141-206 (335)
408 cd03114 ArgK-like The function 97.7 0.00045 9.7E-09 47.2 8.6 58 53-121 91-148 (148)
409 COG3523 IcmF Type VI protein s 97.7 0.00019 4E-09 63.4 8.2 114 9-125 128-271 (1188)
410 cd02038 FleN-like FleN is a me 97.6 0.00026 5.7E-09 47.8 6.8 67 54-124 45-111 (139)
411 PRK12727 flagellar biosynthesi 97.6 0.0005 1.1E-08 56.0 8.3 81 53-153 428-513 (559)
412 PRK08118 topology modulation p 97.6 7.5E-05 1.6E-09 52.1 3.3 23 7-29 2-24 (167)
413 TIGR00959 ffh signal recogniti 97.5 0.00034 7.4E-09 55.9 7.1 80 54-153 183-268 (428)
414 COG0523 Putative GTPases (G3E 97.5 0.0062 1.3E-07 47.0 13.6 99 54-170 85-193 (323)
415 PF13207 AAA_17: AAA domain; P 97.5 8.5E-05 1.9E-09 48.7 3.1 22 8-29 1-22 (121)
416 KOG2484 GTPase [General functi 97.5 0.00014 3E-09 56.4 4.2 57 4-64 250-307 (435)
417 COG0563 Adk Adenylate kinase a 97.5 0.0001 2.2E-09 51.9 3.2 23 7-29 1-23 (178)
418 cd04178 Nucleostemin_like Nucl 97.5 0.00049 1.1E-08 48.2 6.5 45 79-125 1-45 (172)
419 PRK07261 topology modulation p 97.5 0.00011 2.4E-09 51.4 3.3 23 7-29 1-23 (171)
420 TIGR00235 udk uridine kinase. 97.5 0.00017 3.6E-09 52.2 4.1 29 1-29 1-29 (207)
421 PRK14721 flhF flagellar biosyn 97.5 0.0013 2.7E-08 52.5 9.2 22 7-28 192-213 (420)
422 cd00009 AAA The AAA+ (ATPases 97.4 0.00078 1.7E-08 45.1 7.1 25 6-30 19-43 (151)
423 PF13671 AAA_33: AAA domain; P 97.4 0.00012 2.7E-09 49.4 2.9 21 9-29 2-22 (143)
424 PRK11537 putative GTP-binding 97.4 0.003 6.5E-08 48.7 10.7 22 8-29 6-27 (318)
425 PRK10751 molybdopterin-guanine 97.4 0.00019 4.2E-09 50.1 3.8 29 1-29 1-29 (173)
426 PF13555 AAA_29: P-loop contai 97.4 0.00019 4.2E-09 41.0 3.0 22 8-29 25-46 (62)
427 PF13521 AAA_28: AAA domain; P 97.3 0.00012 2.7E-09 50.7 2.2 22 8-29 1-22 (163)
428 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0018 3.9E-08 40.2 7.3 69 9-90 2-71 (99)
429 PRK05480 uridine/cytidine kina 97.3 0.00031 6.6E-09 50.8 4.0 27 3-29 3-29 (209)
430 PF04665 Pox_A32: Poxvirus A32 97.3 0.00023 5E-09 52.3 3.3 25 5-29 12-36 (241)
431 cd02019 NK Nucleoside/nucleoti 97.3 0.00028 6E-09 41.5 3.1 21 9-29 2-22 (69)
432 PRK14737 gmk guanylate kinase; 97.3 0.0004 8.7E-09 49.3 4.1 24 6-29 4-27 (186)
433 PRK14738 gmk guanylate kinase; 97.2 0.00051 1.1E-08 49.6 4.5 25 5-29 12-36 (206)
434 PRK14530 adenylate kinase; Pro 97.2 0.00039 8.4E-09 50.6 3.7 21 8-28 5-25 (215)
435 KOG0780 Signal recognition par 97.2 0.00026 5.5E-09 54.9 2.8 53 52-104 182-240 (483)
436 PTZ00088 adenylate kinase 1; P 97.2 0.00042 9E-09 50.9 3.8 28 1-28 1-28 (229)
437 PRK14527 adenylate kinase; Pro 97.2 0.0004 8.6E-09 49.5 3.6 28 1-28 1-28 (191)
438 PRK06217 hypothetical protein; 97.2 0.00034 7.4E-09 49.5 3.2 23 7-29 2-24 (183)
439 PRK05703 flhF flagellar biosyn 97.2 0.0064 1.4E-07 48.8 10.6 80 54-154 300-387 (424)
440 COG1419 FlhF Flagellar GTP-bin 97.2 0.00075 1.6E-08 52.9 5.2 66 53-125 281-353 (407)
441 PF00004 AAA: ATPase family as 97.2 0.0004 8.6E-09 46.0 3.2 22 9-30 1-22 (132)
442 smart00382 AAA ATPases associa 97.2 0.00043 9.4E-09 46.0 3.3 25 7-31 3-27 (148)
443 COG0541 Ffh Signal recognition 97.2 0.0029 6.3E-08 50.0 8.1 101 4-104 98-239 (451)
444 PRK03839 putative kinase; Prov 97.2 0.00041 8.9E-09 48.9 3.2 22 8-29 2-23 (180)
445 COG1126 GlnQ ABC-type polar am 97.2 0.00053 1.1E-08 49.2 3.7 22 158-179 164-185 (240)
446 PRK06731 flhF flagellar biosyn 97.1 0.0078 1.7E-07 45.3 10.0 80 53-153 154-240 (270)
447 PRK12726 flagellar biosynthesi 97.1 0.003 6.5E-08 49.6 8.0 22 6-27 206-227 (407)
448 PRK14723 flhF flagellar biosyn 97.1 0.0022 4.7E-08 54.6 7.8 20 8-27 187-206 (767)
449 cd02042 ParA ParA and ParB of 97.1 0.0021 4.5E-08 40.9 6.1 82 9-102 2-84 (104)
450 COG1116 TauB ABC-type nitrate/ 97.1 0.00042 9E-09 50.7 3.0 21 9-29 32-52 (248)
451 PF03205 MobB: Molybdopterin g 97.1 0.00049 1.1E-08 46.5 3.1 22 8-29 2-23 (140)
452 PF00005 ABC_tran: ABC transpo 97.1 0.00047 1E-08 46.2 3.0 23 8-30 13-35 (137)
453 COG0194 Gmk Guanylate kinase [ 97.1 0.00055 1.2E-08 47.9 3.2 26 5-30 3-28 (191)
454 COG1136 SalX ABC-type antimicr 97.1 0.00047 1E-08 50.1 2.9 22 8-29 33-54 (226)
455 PF13238 AAA_18: AAA domain; P 97.1 0.0005 1.1E-08 45.3 2.9 21 9-29 1-21 (129)
456 cd03110 Fer4_NifH_child This p 97.1 0.0041 8.8E-08 43.7 7.6 82 52-152 91-172 (179)
457 KOG2423 Nucleolar GTPase [Gene 97.1 0.0003 6.5E-09 54.7 1.8 85 3-94 304-391 (572)
458 PF07728 AAA_5: AAA domain (dy 97.1 0.0006 1.3E-08 45.9 3.1 22 8-29 1-22 (139)
459 cd00071 GMPK Guanosine monopho 97.0 0.00061 1.3E-08 45.9 3.1 21 9-29 2-22 (137)
460 COG1161 Predicted GTPases [Gen 97.0 0.0007 1.5E-08 52.3 3.7 95 59-171 15-110 (322)
461 PRK10078 ribose 1,5-bisphospho 97.0 0.00063 1.4E-08 48.3 3.2 22 8-29 4-25 (186)
462 PRK12723 flagellar biosynthesi 97.0 0.012 2.5E-07 46.7 10.5 81 53-153 254-341 (388)
463 TIGR02322 phosphon_PhnN phosph 97.0 0.00063 1.4E-08 47.9 3.1 22 8-29 3-24 (179)
464 PF02367 UPF0079: Uncharacteri 97.0 0.0029 6.3E-08 41.6 6.0 23 7-29 16-38 (123)
465 PRK13949 shikimate kinase; Pro 97.0 0.0007 1.5E-08 47.3 3.3 21 8-28 3-23 (169)
466 PRK14532 adenylate kinase; Pro 97.0 0.00061 1.3E-08 48.4 3.1 23 7-29 1-23 (188)
467 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00069 1.5E-08 43.3 2.8 21 7-27 16-36 (107)
468 PRK00625 shikimate kinase; Pro 97.0 0.00072 1.6E-08 47.4 3.1 21 8-28 2-22 (173)
469 TIGR01360 aden_kin_iso1 adenyl 97.0 0.0007 1.5E-08 47.9 3.0 22 7-28 4-25 (188)
470 PRK01889 GTPase RsgA; Reviewed 97.0 0.0011 2.4E-08 52.0 4.2 24 7-30 196-219 (356)
471 TIGR03263 guanyl_kin guanylate 96.9 0.00081 1.7E-08 47.3 3.0 22 8-29 3-24 (180)
472 PLN02674 adenylate kinase 96.9 0.001 2.2E-08 49.2 3.5 26 3-28 28-53 (244)
473 TIGR00150 HI0065_YjeE ATPase, 96.9 0.003 6.4E-08 42.2 5.4 22 8-29 24-45 (133)
474 PRK05057 aroK shikimate kinase 96.9 0.0012 2.7E-08 46.2 3.7 23 7-29 5-27 (172)
475 PRK00300 gmk guanylate kinase; 96.9 0.0012 2.6E-08 47.5 3.8 23 7-29 6-28 (205)
476 PRK08233 hypothetical protein; 96.9 0.0012 2.5E-08 46.5 3.5 24 6-29 3-26 (182)
477 PRK14531 adenylate kinase; Pro 96.9 0.0011 2.3E-08 47.0 3.3 22 7-28 3-24 (183)
478 cd03238 ABC_UvrA The excision 96.9 0.0011 2.3E-08 46.7 3.3 21 7-27 22-42 (176)
479 PRK04195 replication factor C 96.9 0.012 2.6E-07 48.2 9.7 25 6-30 39-63 (482)
480 cd03111 CpaE_like This protein 96.9 0.0032 6.8E-08 40.4 5.2 61 55-119 44-106 (106)
481 PF13191 AAA_16: AAA ATPase do 96.9 0.00089 1.9E-08 47.1 2.8 23 6-28 24-46 (185)
482 PHA00729 NTP-binding motif con 96.9 0.0012 2.7E-08 48.0 3.5 25 5-29 16-40 (226)
483 cd01428 ADK Adenylate kinase ( 96.9 0.00092 2E-08 47.6 2.9 22 8-29 1-22 (194)
484 cd02023 UMPK Uridine monophosp 96.9 0.001 2.3E-08 47.6 3.1 21 9-29 2-22 (198)
485 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0011 2.3E-08 46.9 3.1 21 9-29 2-22 (183)
486 cd01130 VirB11-like_ATPase Typ 96.8 0.0012 2.6E-08 46.9 3.3 25 6-30 25-49 (186)
487 PRK02496 adk adenylate kinase; 96.8 0.0012 2.5E-08 46.8 3.3 22 7-28 2-23 (184)
488 PLN02200 adenylate kinase fami 96.8 0.0015 3.3E-08 48.1 3.9 24 5-28 42-65 (234)
489 COG3638 ABC-type phosphate/pho 96.8 0.001 2.2E-08 48.4 2.8 21 8-28 32-52 (258)
490 COG4962 CpaF Flp pilus assembl 96.8 0.0024 5.2E-08 49.1 4.9 26 6-31 173-198 (355)
491 KOG2423 Nucleolar GTPase [Gene 96.8 0.009 1.9E-07 46.8 7.9 89 75-177 211-299 (572)
492 cd01131 PilT Pilus retraction 96.8 0.0012 2.6E-08 47.4 3.1 22 9-30 4-25 (198)
493 TIGR01351 adk adenylate kinase 96.8 0.001 2.2E-08 48.2 2.7 21 8-28 1-21 (210)
494 COG1120 FepC ABC-type cobalami 96.8 0.0012 2.5E-08 49.1 3.0 22 8-29 30-51 (258)
495 PF13173 AAA_14: AAA domain 96.8 0.0013 2.9E-08 43.6 3.1 24 8-31 4-27 (128)
496 PRK06547 hypothetical protein; 96.8 0.0017 3.6E-08 45.6 3.6 26 4-29 13-38 (172)
497 PF13401 AAA_22: AAA domain; P 96.8 0.0012 2.7E-08 43.7 2.8 23 7-29 5-27 (131)
498 PF05621 TniB: Bacterial TniB 96.8 0.0043 9.3E-08 47.0 5.8 26 5-30 60-85 (302)
499 COG3839 MalK ABC-type sugar tr 96.8 0.0013 2.7E-08 50.8 3.0 22 9-30 32-53 (338)
500 PRK05541 adenylylsulfate kinas 96.7 0.0019 4E-08 45.4 3.6 26 4-29 5-30 (176)
No 1
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-41 Score=227.19 Aligned_cols=171 Identities=32% Similarity=0.632 Sum_probs=156.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
....+||+++|..++|||||+.||..+.|.+...+|++..| ...+.+++..+.+.||||+||++|.++.++++++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35679999999999999999999999999998889996554 67788888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
|+|||+++.+||..+ +.|+..++... +++-+.+||||+|+.+.+. +..++++.++...+. .|+|+||
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSA 149 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSA 149 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEec
Confidence 999999999999999 99999999988 5777888999999988655 999999999999998 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCcchH
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPKNKK 185 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~~~ 185 (198)
+++.|++++|..|.+.+.....+..
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred ccccCHHHHHHHHHHhccCcccccc
Confidence 9999999999999999988766643
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-40 Score=225.67 Aligned_cols=167 Identities=35% Similarity=0.704 Sum_probs=155.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++-|||+++|.+|+|||+|+.||..+.+.+.|..|++..+ .+.+.++++.+.++||||+||++|++....++++++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 3678999999999999999999999999999999997666 677889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||+++.+||..+ ..|+..+.++. ++.|.++||||+|+.+... ++.++++.++..++.+.|+|+||+
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999 99999999988 6789999999999988776 999999999999999559999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029144 162 TQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (198)
++.|+++.|..+...+....
T Consensus 156 ~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CccCHHHHHHHHHHHHHHhc
Confidence 99999999999999885543
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.3e-39 Score=230.33 Aligned_cols=188 Identities=57% Similarity=0.974 Sum_probs=156.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
..+||+++|..|+|||||+.++..+.+.+.+.||.+..+...+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999999999999877776677888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.+|+.+...|...+....++.|+++|+||+|+.+..... ........+..++++.+++..+..+|+++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999557888777766789999999999996542100 011122346778899999998855899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144 163 QQNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL 198 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~ 198 (198)
|.|++++|.++++.+..+...+ ++.+|.+|
T Consensus 162 g~~v~e~f~~l~~~~~~~~~~~------~~~~c~~~ 191 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNPTPIK------DTKSCVLL 191 (191)
T ss_pred CCCHHHHHHHHHHHHhcccccc------CCCCceeC
Confidence 9999999999999887653211 22359886
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.8e-38 Score=223.08 Aligned_cols=174 Identities=91% Similarity=1.399 Sum_probs=152.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||+.++..+.+...+.+|.+..+...+.+++..+.+++|||+|+++|..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999999999988777777888999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (198)
++++.+|+.+...|+..+....++.|+++||||+|+.+...........+.++.+++..+++..+..+|+||||++|.||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999985689988887777899999999999965431111223334578889999999998757999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 029144 167 KAVFDAAIKVVLQP 180 (198)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (198)
+++|..+++.+..+
T Consensus 162 ~~~F~~~~~~~~~~ 175 (176)
T cd04133 162 KAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987543
No 5
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.1e-39 Score=232.47 Aligned_cols=176 Identities=38% Similarity=0.680 Sum_probs=152.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
..+||+++|..|||||||+.+|..+.+...+.||.+..+...+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999999999999877777788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc--CCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.+|+.+...|+..+....++.|+++|+||+|+.+...... .....+.++.++++++++..++..|+||||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 9999999999865789999988778899999999999964311000 01112458889999999999986799999999
Q ss_pred CC-CHHHHHHHHHHHHcCC
Q 029144 163 QQ-NVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~-~i~~~~~~i~~~~~~~ 180 (198)
|. |++++|..++..+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999887553
No 6
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.2e-38 Score=225.63 Aligned_cols=186 Identities=49% Similarity=0.869 Sum_probs=162.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|.+|+|||||++++.++.+.+.+.++....+...+... +..+.+.+||+||+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877776666665 67789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
|++++.+++.+...|+..+....++.|+++|+||+|+.+.. .....+..+++++++...+..+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK------NLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 99999999998667888777666789999999999996542 112236678888999998876799999999999
Q ss_pred HHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144 166 VKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL 198 (198)
Q Consensus 166 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~ 198 (198)
++++|..+++.+.....+.++.+++++++|++|
T Consensus 155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 999999999999998888888889999999987
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.5e-38 Score=222.26 Aligned_cols=177 Identities=37% Similarity=0.709 Sum_probs=153.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+...+||+++|.+|+|||||++++..+.+.+.+.||.+..+...+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 34578999999999999999999999999999999998877777888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+|||++++.+|+.+...|...+....++.|+++|+||+|+.+..... ......+.++.+++++++++.++.+|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997678999998888899999999999996531100 0011223588899999999999658999999
Q ss_pred CCCCC-HHHHHHHHHHHHcC
Q 029144 161 KTQQN-VKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~-i~~~~~~i~~~~~~ 179 (198)
++|.| ++++|..+++.++.
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999987543
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-38 Score=216.69 Aligned_cols=166 Identities=34% Similarity=0.564 Sum_probs=152.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+.+|++++|..++||||||.+|+.+.+..+|.+|++-.| ...+.+.+..+.|++|||+||++|+++.+.++++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 568999999999999999999999999999999997555 7788899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||+++..||+.. ..|++.+.... . +.-+++|+||.||.+.++ +..+++...+++++. .|+++||+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak 168 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK 168 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence 9999999999999 88888888766 3 477789999999988776 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 029144 162 TQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (198)
.|+||+.+|..|..++.....
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCCHHHHHHHHHHhccCccc
Confidence 999999999999988876543
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.1e-38 Score=223.53 Aligned_cols=182 Identities=28% Similarity=0.510 Sum_probs=154.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..+||+++|..|+|||||+.+|..+.+..++.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4578999999999999999999999988888877775544 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++.+|+.+ ..|+..+....++.|+++|+||+|+..... ++.++++.+++..++ +|+++||++
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999999 889999988778999999999999976543 788999999999988 799999999
Q ss_pred CCCHHHHHHHHHHHHcCCCcch--HHhhccccCCccc
Q 029144 163 QQNVKAVFDAAIKVVLQPPKNK--KKKKRKAQKACSI 197 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~~~--~~~~~~~~~~c~~ 197 (198)
|.|++++|.++++.+....... ++.++=.++.|-|
T Consensus 152 g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T cd04121 152 NFNITESFTELARIVLMRHGRPPQSPPQNCSRNSCKI 188 (189)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCCCccccCCcccc
Confidence 9999999999999886544322 2233334455543
No 10
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-37 Score=219.62 Aligned_cols=173 Identities=37% Similarity=0.718 Sum_probs=150.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++..+.++..+.||.+..+...+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999998777777888999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++++|+.+...|...+....++.|+++|+||+|+.++.... ......+.++.++++++++..++.+|+|+||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999996578999998888899999999999996521100 0001123588899999999999767999999999
Q ss_pred CC-HHHHHHHHHHHHc
Q 029144 164 QN-VKAVFDAAIKVVL 178 (198)
Q Consensus 164 ~~-i~~~~~~i~~~~~ 178 (198)
++ ++++|..+++..+
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999999654
No 11
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.1e-37 Score=225.78 Aligned_cols=174 Identities=37% Similarity=0.729 Sum_probs=151.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+|+|.+|+|||||+.+|..+.+++.|.||....+...+.+++..+.+.+||++|++.|..++..+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc--CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++++|+.+...|...+....++.|+++|+||+|+.++..... ......+++.+++..+++..++.+|+||||+++.
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999999997788888877778999999999999975421110 1112335788899999999997689999999988
Q ss_pred C-HHHHHHHHHHHHcCC
Q 029144 165 N-VKAVFDAAIKVVLQP 180 (198)
Q Consensus 165 ~-i~~~~~~i~~~~~~~ 180 (198)
+ ++++|..++...+.+
T Consensus 162 ~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 162 RSVRDVFHVATVASLGR 178 (222)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 5 999999999977653
No 12
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.7e-37 Score=219.57 Aligned_cols=187 Identities=42% Similarity=0.708 Sum_probs=155.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
.||+++|.+|+|||||+++|..+.+...+.+|....+...+.+++..+.+.+||++|++.|..++..++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888899877777677778888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++.+|+.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..++...+..+|+++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 9999999988557888888777899999999999997643211 00111223566778888888775579999999999
Q ss_pred CHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144 165 NVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL 198 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~ 198 (198)
|++++|.++++.+..... ..+....|+||
T Consensus 161 ~v~e~f~~l~~~~~~~~~-----~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRP-----PHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccc-----cCcCCCcceeC
Confidence 999999999998875443 34455668876
No 13
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.1e-37 Score=222.38 Aligned_cols=179 Identities=36% Similarity=0.623 Sum_probs=153.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
||+++|.+|+|||||+++|..+.+...+.+|.+..+.....+++..+.+++||+||+++|..++..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888988877777777888888999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
+++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... ++.+++..++..++. +|+++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999998 67777665432 4789999999999976443 677778888888887 7999999999
Q ss_pred CCHHHHHHHHHHHHcCCCcch-------HHhhccccCCcccC
Q 029144 164 QNVKAVFDAAIKVVLQPPKNK-------KKKKRKAQKACSIL 198 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~c~~~ 198 (198)
.|++++|.++++.+...+... ...+++++++|.+|
T Consensus 149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 999999999999886544443 33556677788876
No 14
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-37 Score=215.25 Aligned_cols=169 Identities=33% Similarity=0.621 Sum_probs=155.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.+..+||+++|.++||||+|+.+|..+.+...+..|.+-. ....+.+++..+.+++|||+||++|....+.+++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3568999999999999999999999999999999999654 477888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||+++..||+.+ ..|+..+..+. ++.|.++||||+|+...+. ++.+.++.+|.++|. .|+|+||
T Consensus 89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSA 156 (207)
T KOG0078|consen 89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSA 156 (207)
T ss_pred EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEccc
Confidence 999999999999999 66999999998 5999999999999977654 999999999999999 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCcc
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
++|.||++.|..+++.+..+...
T Consensus 157 k~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 157 KTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred cCCCCHHHHHHHHHHHHHhhcch
Confidence 99999999999999998754443
No 15
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.9e-37 Score=215.20 Aligned_cols=172 Identities=56% Similarity=0.984 Sum_probs=148.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||+.++..+.+.+.+.||.+..+...+.+++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999889999998877766778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++++++.+...|...+....++.|+++|+||+|+.+..... ......+.+..+++++++++.+...|+++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 99999999998557988888777789999999999996542211 1112234578889999999887558999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
.|++++|+.+++.+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 16
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=217.18 Aligned_cols=182 Identities=34% Similarity=0.573 Sum_probs=152.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||+++|..++..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 55799999999999999999999999998888899888887778889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++++++.+ ..|...+.... ++.|+++|+||+|+.+... +..+++..++...+. +|+++||+
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak 150 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK 150 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence 9999999999998 67777776543 4889999999999965433 666777888888887 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcch--HHhhccccCCccc
Q 029144 162 TQQNVKAVFDAAIKVVLQPPKNK--KKKKRKAQKACSI 197 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~~--~~~~~~~~~~c~~ 197 (198)
+|.|++++|.++++.+.+..+.. ...++++++-|-+
T Consensus 151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLI 188 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeee
Confidence 99999999999999886653332 2233334444544
No 17
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=9e-37 Score=214.41 Aligned_cols=165 Identities=25% Similarity=0.508 Sum_probs=147.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.+||+++|.+|+|||||++++..+.+++.+.+|.+..+...+.+++..+.+++||+||+++|..++..+++++|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35899999999999999999999999988889999877777788899899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.++..+ ..|...+.... ++.|+++|+||+|+.+... ++.+++..+++..++ +|+++||++
T Consensus 81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~ 148 (172)
T cd04141 81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAAL 148 (172)
T ss_pred EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCC
Confidence 999999999999 66777776543 5899999999999976543 788889999998888 799999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029144 163 QQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (198)
|.|++++|.++++.+....
T Consensus 149 ~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 149 RHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999887643
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=208.04 Aligned_cols=170 Identities=29% Similarity=0.543 Sum_probs=153.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
...+||+++|.+|+|||||++++....|...+..|++.. ..+.+.++++.+.+++|||+||++|.++...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 457899999999999999999999999999999999755 4788999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+|||++++.+|+.+ ..|...+-... ..-|+||+|||+|+... ..+.++.+.+++++...|.-||||
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--------~~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--------KSRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC--------ccceeeHHHHHHHHHhcCCceeEE
Confidence 99999999999999 89988887665 26799999999999762 124589999999999998889999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+||++..|+.+.|..+.+.++..+.
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ecccccccHHHHHHHHHHHHHhccc
Confidence 9999999999999999998877664
No 19
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=203.92 Aligned_cols=165 Identities=32% Similarity=0.650 Sum_probs=151.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|.+|+|||||+.+|..+.+.+....|++..| .+.+.+++..+++.||||+||++|+.+.+.+++++.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 569999999999999999999999999888777776555 6778899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++.+++|..+ ..|+..+..+. +++..++|+||+|....+. ++.+++..|++++++ .|+|+||+
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk 157 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK 157 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence 9999999999999 99999999988 5777789999999866554 999999999999998 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029144 162 TQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (198)
+.+|+...|+.++.+++..+
T Consensus 158 t~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 158 TRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhccHHHHHHHHHHHHhcCc
Confidence 99999999999999987644
No 20
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.4e-37 Score=218.45 Aligned_cols=162 Identities=31% Similarity=0.600 Sum_probs=144.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+.|+++|..|||||||+++|..+.+.+.+.+|.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999888888886444 566788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~ 163 (198)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.+++... ++ .|+++||++|
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg 148 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN 148 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence 99999999999 78888887765 5899999999999976543 7788888888875 55 7999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029144 164 QNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (198)
.|++++|.++++.+...
T Consensus 149 ~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 149 FNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 21
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=210.02 Aligned_cols=171 Identities=30% Similarity=0.590 Sum_probs=156.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCc
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (198)
|+....+|++++|..|+|||+|+.+|....|...+..|.+..+ ...+.++++.+++++|||+|++.|++....+++++.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6777889999999999999999999999999999999987665 677889999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 80 VFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
++++|||++++++|..+ ..|+..++.+. ++.-+++++||+||...+. ++.++++.|+++++. .|+++
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence 99999999999999999 78888887775 8999999999999987765 999999999999998 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
||++++|++|.|..+...+++..+.
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888665443
No 22
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.7e-36 Score=209.71 Aligned_cols=170 Identities=66% Similarity=1.104 Sum_probs=146.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||+.++..+.+.+.+.+|....+...+.+++..+.+.+||+||++.|..++..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999999999999877777777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
+++++++..+...|+..+....++.|+++|+||+|+.+..... ......+.++.++++.++.+++..+|+++||++|.
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 161 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK 161 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence 9999999998557888887777789999999999996432100 01122345788999999999986589999999999
Q ss_pred CHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKV 176 (198)
Q Consensus 165 ~i~~~~~~i~~~ 176 (198)
|++++|..+++.
T Consensus 162 ~i~~~f~~l~~~ 173 (174)
T cd01871 162 GLKTVFDEAIRA 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999999864
No 23
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-35 Score=212.97 Aligned_cols=165 Identities=28% Similarity=0.464 Sum_probs=143.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+||+++|.+|+|||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.|..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999998888888887544 4556666 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
||++++++++.+ ..|...+.... .++|+++|+||+|+.+... +..+++.+++...+...|+++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999 78877776432 4789999999999975433 7788899999998855899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCc
Q 029144 160 SKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
|++|.|++++|.++++.+....+
T Consensus 150 ak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHhch
Confidence 99999999999999998876544
No 24
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.1e-35 Score=212.07 Aligned_cols=166 Identities=30% Similarity=0.577 Sum_probs=145.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..+||+++|++|+|||||++++.++.+.+.+.+|.+..+ ...+.+++..+.+.+||+||++.|..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 3578999999999999999999999988888888876443 455667787889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++++++.+ ..|+..+....+..|+++|+||+|+.+... +..+++..++...+. +|+++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999998 788888888778899999999999976543 667788888888886 799999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029144 163 QQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (198)
|.|++++|+++++.+....
T Consensus 152 ~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 152 NINVEEMFNCITELVLRAK 170 (199)
T ss_pred CcCHHHHHHHHHHHHHHhh
Confidence 9999999999999886643
No 25
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.9e-37 Score=200.62 Aligned_cols=164 Identities=32% Similarity=0.620 Sum_probs=152.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
-++.+++|.+|+|||+|+.+|..+.|.+.|..|++..+ .+++.+++..+.++|||++|+++|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46889999999999999999999999999999997555 67788999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
||+++.+||... .+|++.++..++..|-++|+||+|.++.+. +..++++.++...++ .+||+|+++.+
T Consensus 88 YDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~~ 155 (198)
T KOG0079|consen 88 YDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKENE 155 (198)
T ss_pred EECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhcc
Confidence 999999999999 999999999999999999999999988765 889999999999999 79999999999
Q ss_pred CHHHHHHHHHHHHcCCC
Q 029144 165 NVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (198)
|++.+|.-|.+.+....
T Consensus 156 NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQAK 172 (198)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 99999999988775433
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.6e-35 Score=203.99 Aligned_cols=160 Identities=29% Similarity=0.581 Sum_probs=141.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++..+.+...+.+|..+.+...+.+++..+.+.+||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999999888888888777777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.+++.. ..|...+.... ++.|+++|+||+|+.+... +..++...++..++. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04136 81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999988 67777776543 5899999999999976443 666777788888885 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
.|++++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~~ 162 (163)
T cd04136 149 INVDEVFADLVRQI 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998765
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.4e-35 Score=204.41 Aligned_cols=162 Identities=31% Similarity=0.628 Sum_probs=142.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+||+||++.|...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999988888888766553 4566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+..... ++.+++..++...+. +++++||++|
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78887776554 6899999999999976543 777888899988887 8999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029144 164 QNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (198)
.|++++|..+++.+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987753
No 28
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=9.4e-35 Score=204.63 Aligned_cols=171 Identities=63% Similarity=1.061 Sum_probs=148.1
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 88 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (198)
|+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.|..++..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888887777777788888899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166 (198)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (198)
++++++.+...|+..+....++.|+++|+||+|+.++.... ........++.+++..++...+...|+++||+++.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998667999988877899999999999997632211 1122233477888899999998768999999999999
Q ss_pred HHHHHHHHHHHcC
Q 029144 167 KAVFDAAIKVVLQ 179 (198)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (198)
+++|..+++.+..
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998754
No 29
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6.4e-35 Score=203.61 Aligned_cols=161 Identities=29% Similarity=0.571 Sum_probs=141.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
++||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999988888889988777777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.+++.+ ..|...+.... ++.|+++|+||+|+.+... +..+++..+++..+. +|+++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999998 66666665432 6899999999999976543 666777788888887 7999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 029144 164 QNVKAVFDAAIKVVL 178 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (198)
.|++++|.++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998653
No 30
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-34 Score=206.80 Aligned_cols=180 Identities=29% Similarity=0.527 Sum_probs=152.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998777777776444 456677788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|+++++++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +|+++||+++.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999999 77888887765 4789999999999976543 677788888888888 79999999999
Q ss_pred CHHHHHHHHHHHHcCCCcc------hHHhhccccCCcccC
Q 029144 165 NVKAVFDAAIKVVLQPPKN------KKKKKRKAQKACSIL 198 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~------~~~~~~~~~~~c~~~ 198 (198)
|++++|.++++.+...... ..+++..++++|+|.
T Consensus 149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T cd04125 149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFIN 188 (188)
T ss_pred CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCcccC
Confidence 9999999999988653332 234667788889873
No 31
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=193.19 Aligned_cols=164 Identities=32% Similarity=0.649 Sum_probs=149.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeE-EEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+|++++|...+|||||+.++....+...+..|.+-.+.. ++.-..+.+.+++|||+|+++|+.....++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 46799999999999999999999999988888888766644 44445677999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+||++|.++|..+ +.|..++..++ .+.|+++|+||||+.+++. ++.+.++.+++++|+ .|||+||+.
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~ 167 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE 167 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence 9999999999999 99999999988 7999999999999988775 999999999999999 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
+.|++.+|+.++..+-+.
T Consensus 168 NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDK 185 (193)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999999877543
No 32
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.8e-34 Score=209.59 Aligned_cols=161 Identities=27% Similarity=0.438 Sum_probs=140.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECC-eEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+||+++|.+|+|||||+++|..+.+...+.+|.+. .+...+.+++ ..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998888888864 4455566654 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
||++++++++.+ ..|...+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999998 78888887764 2468999999999975443 777888899998887 7999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|+|++++|+++++.+..
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 33
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=5.8e-34 Score=200.60 Aligned_cols=172 Identities=56% Similarity=1.011 Sum_probs=147.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|++|+|||||++++..+.+...+.++..+.+...+.+++..+.+.+||+||++.|...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc--ccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--LADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++.+++.....|...+....++.|+++|+||+|+.+.... .......+.++.+++..+++..+..+|+++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 999999999866788888766679999999999999654211 011222335777889999999987789999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029144 165 NVKAVFDAAIKVVL 178 (198)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (198)
|++++|+.+++.++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.4e-34 Score=200.58 Aligned_cols=163 Identities=29% Similarity=0.624 Sum_probs=143.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999888888886554 4556778888999999999999999999899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 67888887765 5799999999999976543 677778888888887 799999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|.++++.+..
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 35
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=204.53 Aligned_cols=179 Identities=66% Similarity=1.093 Sum_probs=164.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
...+|+++||..++|||+|+..+..+.|++.|.||..+++...+.++ +..+.+.+|||+||+.|+.++...+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc--ccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--LADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|++.++.+++.+...|+..+.+++|+.|+++||+|.||.++... ...+.....++.++++.++++.|+..|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999999999999999999999999999999854321 23345566789999999999999889999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCc
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+++.|++++|+..+..+....+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988765
No 36
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.2e-34 Score=198.80 Aligned_cols=160 Identities=30% Similarity=0.577 Sum_probs=139.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++..+.+.+.+.+|....+...+.+++..+.+++||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888887666777778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.++..+ ..|...+.... .+.|+++|+||+|+.+... +...+...++...+. +++++||+++
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 99999999998 77777776543 5899999999999965432 566667777777776 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
.|++++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd04176 149 TMVNELFAEIVRQM 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.5e-34 Score=198.79 Aligned_cols=158 Identities=35% Similarity=0.648 Sum_probs=140.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888886544 456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +|+++||++|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 78888887665 4799999999999976543 777889999988886 79999999999
Q ss_pred CHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKV 176 (198)
Q Consensus 165 ~i~~~~~~i~~~ 176 (198)
|++++|.+|++.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 38
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4e-34 Score=204.26 Aligned_cols=163 Identities=36% Similarity=0.679 Sum_probs=140.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+||+++|.+|+|||||++++..+.+. +.+.+|.+..+ ...+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 35667776554 34567788889999999999999999888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
+|++++++++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++..++. +|+++||++|
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999998 77888887765 4789999999999975443 666788888888887 7999999999
Q ss_pred CCHHHHHHHHHHHHcCCC
Q 029144 164 QNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~ 181 (198)
.|++++|.++++.+....
T Consensus 149 ~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 149 LNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999886654
No 39
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=9.1e-34 Score=199.48 Aligned_cols=169 Identities=54% Similarity=0.957 Sum_probs=144.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||+.++..+.+..++.+|..+.+...+.+++..+.+.+||+||++.|...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999999889998877777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++.+++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+...|+++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 9999999988567888887766789999999999996532100 00112344677889999999887789999999999
Q ss_pred CHHHHHHHHHH
Q 029144 165 NVKAVFDAAIK 175 (198)
Q Consensus 165 ~i~~~~~~i~~ 175 (198)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998864
No 40
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.9e-34 Score=206.73 Aligned_cols=163 Identities=26% Similarity=0.442 Sum_probs=141.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
...+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|+++|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4678999999999999999999999999888888886444 445666777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++.++..+ ..|+..+....++.|+++|+||+|+.... +..+++ .++...++ .|+++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999998 78999888777899999999999996432 334444 66677776 799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
|.|++++|.++++.+...
T Consensus 157 ~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 999999999999988654
No 41
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.1e-34 Score=201.21 Aligned_cols=169 Identities=30% Similarity=0.566 Sum_probs=140.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|..|+|||||+++|..+.+.+.+.+|.+..+ ...+.+++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888999987555 456778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|++++.++..+ ..|+..+....+ ..| ++|+||+|+..... ........++++++++..+. +++++||++|.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 788888876553 456 68899999964210 00011234667788888886 79999999999
Q ss_pred CHHHHHHHHHHHHcCCCcc
Q 029144 165 NVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~ 183 (198)
|++++|.++++.+...+..
T Consensus 153 ~v~~lf~~l~~~l~~~~~~ 171 (182)
T cd04128 153 NVQKIFKIVLAKAFDLPLT 171 (182)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 9999999999988764433
No 42
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3e-34 Score=207.72 Aligned_cols=169 Identities=28% Similarity=0.437 Sum_probs=133.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||+++|..+.+.. +.+|.+..+... ....+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998865 466665443221 1245788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc---------ccCCCCCccccHHHHHHHHHHcCC-----
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF---------LADHPGAVPITTAQGEELRKLIGA----- 152 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----- 152 (198)
++++++|..+..+|........++.|+++|+||+|+.+.... .......+.+..++++.++.+.+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999954455444433368999999999999762110 011122456888999999998762
Q ss_pred --------CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 153 --------PVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 153 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+|+|+||++|.||+++|..+++.+..
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 369999999999999999999987764
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.4e-34 Score=199.54 Aligned_cols=159 Identities=41% Similarity=0.840 Sum_probs=146.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
||+++|++++|||||+++|.++.+++.+.+|. .+.....+.+++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999988 55567778889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
++++++++.+ ..|+..+....+ +.|+++|+||+|+.+.+. ++.++++.++.+++. +|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence 9999999999 799999999886 799999999999987554 888999999999995 899999999999
Q ss_pred HHHHHHHHHHHHc
Q 029144 166 VKAVFDAAIKVVL 178 (198)
Q Consensus 166 i~~~~~~i~~~~~ 178 (198)
+.++|..+++.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 44
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-35 Score=200.53 Aligned_cols=169 Identities=34% Similarity=0.588 Sum_probs=154.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+.-+||+++|.+++|||-|+.||..+.|..+..+|.+..+ ...+.++++.+..+||||+||++|+.....+++++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 3578999999999999999999999999999999997666 567789999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++...+|+.+ .+|+..++.+. +++++++|+||+||..-+. ++.++++.++...+. .++++||+
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl 159 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL 159 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence 99999999999988 99999999998 7999999999999987554 899999999999998 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcch
Q 029144 162 TQQNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~~ 184 (198)
+..|+++.|..++..++....++
T Consensus 160 ~~tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988886644433
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=8.1e-34 Score=198.27 Aligned_cols=160 Identities=33% Similarity=0.668 Sum_probs=139.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998888888876444 344556777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.+++...+. +++++||+++.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 78888887765 5789999999999976543 566778888888887 79999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029144 165 NVKAVFDAAIKVVL 178 (198)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (198)
|++++|.++++.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 46
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.3e-34 Score=201.87 Aligned_cols=163 Identities=37% Similarity=0.632 Sum_probs=141.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEEC----------CeEEEEEEEeCCCccCccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~~ 73 (198)
+.+||+++|++|+|||||++++..+.+.+.+.+|.+..+. ..+.+. +..+.+.+||+||++.|...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 5689999999999999999999999998888888765443 333332 45688999999999999999999
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
+++++|++++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... ++.+++.+++...+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~ 151 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG 151 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence 99999999999999999999999 78888887653 5889999999999976543 67788899999998
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
. +++++||++|.|++++|+++++.+.+
T Consensus 152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 152 I-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7 79999999999999999999987754
No 47
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=9.5e-34 Score=197.66 Aligned_cols=160 Identities=33% Similarity=0.619 Sum_probs=140.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|++|+|||||++++.++.+...+.++..+.+.....+++..+.+.+||+||+++|..++..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888887777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++++++.+ ..|...+.... .+.|+++|+||+|+.+... +..+++..++...+. +|+++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999988 66666655443 4789999999999976543 666778888888886 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029144 165 NVKAVFDAAIKVVL 178 (198)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (198)
|++++|+++++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 48
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1e-33 Score=196.85 Aligned_cols=159 Identities=36% Similarity=0.626 Sum_probs=139.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++.++.+...+.+|....+...+.+++..+.+.+||+||++.|..++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999998888889888777777778888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.+++.+ ..|...+.... .+.|+++|+||+|+.+.. ....++..++...+. +++++||++|
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR 147 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence 99999999988 66766666543 589999999999997632 566777888888887 7999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
.|++++|.++++.+
T Consensus 148 ~gi~~l~~~l~~~~ 161 (162)
T cd04138 148 QGVEEAFYTLVREI 161 (162)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 49
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.1e-33 Score=197.66 Aligned_cols=161 Identities=32% Similarity=0.672 Sum_probs=141.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988777777776444 45566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||++|
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999999 77888887765 6799999999999976543 677888888988887 7999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 029144 164 QNVKAVFDAAIKVVL 178 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (198)
.|++++|..+++.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998775
No 50
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.2e-33 Score=196.99 Aligned_cols=160 Identities=35% Similarity=0.617 Sum_probs=140.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999988888888887777767778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.+++.+ ..|...+.... .+.|+++|+||+|+..... +..++...++...+. +++++||++|
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 99999999998 66766666542 5899999999999976543 666777888888887 7999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
.|++++|+++++.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998764
No 51
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.5e-33 Score=196.99 Aligned_cols=158 Identities=26% Similarity=0.508 Sum_probs=137.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||++++..+.+...+.++....+......+...+.+.+||+||+++|..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988888888876666666677788999999999999999988888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
++++++++.+ ..|...+.... ++.|+++|+||+|+.+... +..+++..++..++. .|+++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999988 67766665532 5799999999999976433 667777888888887 799999999
Q ss_pred CCCHHHHHHHHHHH
Q 029144 163 QQNVKAVFDAAIKV 176 (198)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (198)
|.|++++|++|++.
T Consensus 150 g~~v~~~f~~l~~~ 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999864
No 52
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.7e-33 Score=199.85 Aligned_cols=168 Identities=44% Similarity=0.668 Sum_probs=133.1
Q ss_pred eeEEEEECCCCCCHHHHHH-HHhhC-----CCCCCCCCccc--cceeEE--------EEECCeEEEEEEEeCCCccCccc
Q 029144 6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~~ 69 (198)
.+||+++|..|+|||||+. ++.++ .+...+.||.+ +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 55543 34566778874 333222 25688899999999999975 3
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc---------CCCCCccccH
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA---------DHPGAVPITT 140 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~---------~~~~~~~~~~ 140 (198)
....+++++|++++|||++++.+++.+...|...+....++.|+++|+||+|+.+...... .....+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999999999999985569888887777899999999999965211000 0012356889
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 141 AQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
++++.++++.++ +|+||||++|.|++++|..+++.
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999998 89999999999999999999874
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-33 Score=196.16 Aligned_cols=162 Identities=30% Similarity=0.557 Sum_probs=140.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988877777765433 4566778877899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..+++..+...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999988 78888887654 5899999999999976543 6777888888888876799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029144 163 QQNVKAVFDAAIKVV 177 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (198)
|.|++++|+++++.+
T Consensus 151 ~~~v~~~~~~l~~~l 165 (165)
T cd01864 151 SQNVEEAFLLMATEL 165 (165)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998753
No 54
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=4.4e-33 Score=199.30 Aligned_cols=167 Identities=32% Similarity=0.522 Sum_probs=141.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+||+++|.+|+|||||++++..+.+.. .+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 6777776655 45677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.. .....+..+++..++...+. +++++||+++.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQD------RSLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccccc------cccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999988 77888887766789999999999986432 11223556677888888877 79999999999
Q ss_pred CHHHHHHHHHHHHcCCC
Q 029144 165 NVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (198)
|++++|+++++.+....
T Consensus 153 gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 153 NVDELFQKVAEDFVSRA 169 (193)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886543
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.1e-33 Score=194.84 Aligned_cols=159 Identities=30% Similarity=0.513 Sum_probs=135.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888887888876544 334455677899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
|+++++++..+ ..|+..+....++.|+++|+||+|+.+.. .. .+..+++...+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999998 78989998887789999999999997432 22 234456666555 799999999999
Q ss_pred HHHHHHHHHHHHcC
Q 029144 166 VKAVFDAAIKVVLQ 179 (198)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (198)
++++|+++++.+..
T Consensus 147 v~~~f~~l~~~~~~ 160 (166)
T cd00877 147 FEKPFLWLARKLLG 160 (166)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999988864
No 56
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.3e-33 Score=196.18 Aligned_cols=160 Identities=23% Similarity=0.542 Sum_probs=140.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998888888886554 456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++.+.++...+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999988 78888887654 3689999999999975332 677788888888886 799999
Q ss_pred cCCCCCHHHHHHHHHHHHc
Q 029144 160 SKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~ 178 (198)
|++|.|++++|++|++.++
T Consensus 149 a~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.9e-33 Score=195.75 Aligned_cols=158 Identities=33% Similarity=0.583 Sum_probs=138.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC--CeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+||+++|.+|+|||||++++..+.+.+.+.+|.+..+ ...+.++ +..+.+++||+||++.|...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988888888875544 4455565 677899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|||+++++++..+ ..|+..+....++.|+++|+||+|+..... +..+++..++...+. +++++||+++
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999988 788888887778999999999999976543 677888889999888 7999999999
Q ss_pred CCHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKV 176 (198)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (198)
.|++++|.+|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999764
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.4e-33 Score=193.81 Aligned_cols=159 Identities=29% Similarity=0.508 Sum_probs=135.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|.+|+|||||++++..+.+.+.+.++....+ .....+++..+.+.+||+||++.|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777766664333 445567788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
|++++.++..+ ..|+..+....++.|+++|+||+|+.+. ..++...++...+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999988 7898888877778999999999998432 12345566666776 799999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 029144 166 VKAVFDAAIKVVLQP 180 (198)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (198)
++++|+.+++.+...
T Consensus 146 v~~l~~~l~~~~~~~ 160 (161)
T cd04124 146 VVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877653
No 59
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.2e-32 Score=195.97 Aligned_cols=177 Identities=48% Similarity=0.780 Sum_probs=147.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
.||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+||++|++.+...+...++++++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988888777788777776677778888889999999999888877778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (198)
+++.++++.+...|+..+....++.|+++|+||+|+.+...........+.+..+++..+++..+..+||++||++|.|+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999986679999887778899999999999964321111112233466778888999998768999999999999
Q ss_pred HHHHHHHHHHHcCCCcc
Q 029144 167 KAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 167 ~~~~~~i~~~~~~~~~~ 183 (198)
+++|.++++.+....++
T Consensus 162 ~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 162 DDVFEAATRAALLVRKS 178 (187)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 99999999887655443
No 60
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=188.57 Aligned_cols=166 Identities=31% Similarity=0.560 Sum_probs=150.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.-+|++++|+.|+|||+|+.+|..+.+.++..-|.+..+ +..+.+.++.++++||||+||++|++..+.+++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 457999999999999999999999999888888887666 5667789999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||++++++|..+ ..|+...+... +++-+++++||.|+.++++ ++..++..|+++... .+.|+||++
T Consensus 88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~T 155 (214)
T KOG0086|consen 88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALT 155 (214)
T ss_pred EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccc
Confidence 9999999999999 88888888877 6888999999999988776 999999999999988 799999999
Q ss_pred CCCHHHHHHHHHHHHcCCCc
Q 029144 163 QQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~ 182 (198)
|+|++|.|-..++.++.+..
T Consensus 156 GeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 156 GENVEEAFLKCARTILNKIE 175 (214)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 99999999998888765443
No 61
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1.2e-32 Score=194.14 Aligned_cols=171 Identities=51% Similarity=0.918 Sum_probs=144.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
.||+++|++|+|||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++.|...+...+.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888887776677788888999999999999999988889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++++++.+...|...+....++.|+++|+||+|+.+..... ........+..+++++++...+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 9999999988667888887766789999999999987542211 01112234566788888888877689999999999
Q ss_pred CHHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKVV 177 (198)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (198)
|++++|.++++.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999765
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.9e-33 Score=195.18 Aligned_cols=162 Identities=35% Similarity=0.631 Sum_probs=139.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
++..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999988877777765443 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
++|||++++++++.+ ..|...+.... ++.|+++|+||+|+.+.. +..+++++++.+.+..+++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----------VSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-----------cCHHHHHHHHHHCCCCeEE
Confidence 999999999999988 77776665432 468999999999996322 6778888999888866899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~ 176 (198)
++||++|.|++++|..+++.
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999875
No 63
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=8.5e-33 Score=197.96 Aligned_cols=180 Identities=22% Similarity=0.395 Sum_probs=139.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccc--------cccccCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~~ 77 (198)
+||+++|.+|||||||++++..+.+...+.||....+ ...+.+++..+.+.+|||||.+.+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886443 445667888899999999997655321 2345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCC
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGA 152 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (198)
+|++++|||++++++++.+ ..|...+... .+++|+++|+||+|+.+.+. +..++++.++. .+++
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999988 7777766554 25799999999999976443 55566666654 4566
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCCCcchHHhh----ccccCCcccC
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKKKKK----RKAQKACSIL 198 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~----~~~~~~c~~~ 198 (198)
+|+++||++|.|++++|..+++.+....+...... .-.+.-|+||
T Consensus 150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 150 -GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred -cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 79999999999999999999998887666543321 2223337765
No 64
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5.7e-33 Score=194.73 Aligned_cols=162 Identities=31% Similarity=0.539 Sum_probs=138.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
||+++|.+|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999999999987555 4566778888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh-CC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHY-AP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
+++++++... ..|+..+... .+ +.|+++|+||+|+.+... .....+++..++.+++. +|+++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999998 7888876543 33 578999999999965321 11345667778888887 79999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029144 165 NVKAVFDAAIKVVLQ 179 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (198)
|++++|+.+++.+.+
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998754
No 65
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.4e-33 Score=194.03 Aligned_cols=165 Identities=21% Similarity=0.303 Sum_probs=138.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCcccccee-EEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
+.+.+||+++|.+|+|||||++++..+.+. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 357899999999999999999999999988 888999876654 456778888889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+++|||++++.+++.+ ..|...+... .+.|+++|+||+|+.+... ....+...++...+...++++||
T Consensus 81 ~llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T cd01892 81 ACLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSS 148 (169)
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEe
Confidence 9999999999999887 6777655322 3799999999999965432 33344566777777655799999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
+++.|++++|..+++.+..
T Consensus 149 ~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 149 KLGDSSNELFTKLATAAQY 167 (169)
T ss_pred ccCccHHHHHHHHHHHhhC
Confidence 9999999999999998764
No 66
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.3e-32 Score=192.77 Aligned_cols=163 Identities=29% Similarity=0.611 Sum_probs=141.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988777777765444 4556677778899999999999999998899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|+|++++.++..+ ..|+..+.... ++.|+++|+||.|+.+... ++.+++..++...+. +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78888887654 6899999999999975443 677888888888887 799999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|.++++.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988753
No 67
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.5e-32 Score=192.33 Aligned_cols=162 Identities=31% Similarity=0.566 Sum_probs=141.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||+++|..++..++++++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999998888888888777777788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++++++.. ..|...+.... .+.|+++++||+|+.+... +..++...++..++..+++++||+++
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 99999999998 67777666532 5899999999999976443 66677778888887448999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 029144 164 QNVKAVFDAAIKVVL 178 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (198)
.|++++|.+++..++
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998664
No 68
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=189.12 Aligned_cols=165 Identities=31% Similarity=0.630 Sum_probs=149.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..|||+++|...+|||||+-+++.+.|......|.... ..+.+.+.+....+.||||+||++|..+-+.++++++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 47899999999999999999999999988877777444 46677788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||++|+++|+.+ +.|...++... ..+-++||+||+|+.+++. ++..++..++...|+ .|+++||++
T Consensus 92 VyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk~ 159 (218)
T KOG0088|consen 92 VYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAKD 159 (218)
T ss_pred EEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccccc
Confidence 9999999999999 99999998877 4678899999999988775 999999999999999 799999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 029144 163 QQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (198)
+.||.++|..+.+.+++..
T Consensus 160 N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 9999999999999886654
No 69
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=9.4e-33 Score=199.77 Aligned_cols=169 Identities=30% Similarity=0.588 Sum_probs=146.6
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCc
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (198)
|.....+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7777889999999999999999999999988777777775544 456677888889999999999999999989999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 80 VFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... ++.+++.++++..+. +|+++
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~ 148 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA 148 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence 99999999999999988 67777666544 5899999999999976543 778888999999887 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCC
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
||+++.|++++|.++++.+++..
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999886543
No 70
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=9.1e-33 Score=192.15 Aligned_cols=158 Identities=32% Similarity=0.600 Sum_probs=137.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988777777765443 455667788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. .++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 77877776554 6899999999999976543 778888889998886 89999999999
Q ss_pred CHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKV 176 (198)
Q Consensus 165 ~i~~~~~~i~~~ 176 (198)
|++++|+++++.
T Consensus 149 ~i~~~~~~~~~~ 160 (161)
T cd04113 149 NVEEAFLKCARS 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 71
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.3e-33 Score=200.35 Aligned_cols=165 Identities=34% Similarity=0.564 Sum_probs=141.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+ ++..+.+++||+||++.|..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999988887777775443 444555 4667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.+++.+ ..|+..+.... ...|+++|+||+|+.+... +..++...++...+. +|+++||+
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak 149 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR 149 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence 9999999999999 67887776554 3578899999999976543 778888899998886 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 029144 162 TQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+|.|++++|++|++.+.....
T Consensus 150 ~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 150 TGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998865533
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.5e-32 Score=191.76 Aligned_cols=161 Identities=35% Similarity=0.601 Sum_probs=139.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999988777777776444 5566677877889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||++++.++..+ ..|+..+....+ +.|+++|+||+|+...+. +..++.+.++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999998 788888877664 699999999999976543 677788888887776 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029144 163 QQNVKAVFDAAIKVV 177 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (198)
|.|++++|+++++.+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.8e-32 Score=189.87 Aligned_cols=155 Identities=26% Similarity=0.375 Sum_probs=128.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|+.|+|||||+.++..+.+.+.+.++. ..+...+.+++..+.+.+||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999998877766553 44456778888889999999999975 245678999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++.+|+.+ ..|+..+.... ++.|+++|+||+|+... ..+.+..+++.++++..+...|++|||++|.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISES--------NPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhc--------CCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999998 67888877664 57999999999998531 1123777888888887643379999999999
Q ss_pred CHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKV 176 (198)
Q Consensus 165 ~i~~~~~~i~~~ 176 (198)
||+++|..+++.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 74
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.2e-32 Score=192.31 Aligned_cols=159 Identities=30% Similarity=0.534 Sum_probs=136.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-ccccccccCCCcEEEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d 86 (198)
||+++|++|+|||||+++++.+.+.+.+.++....+.....+++..+.+.+||+||++.+ ...+..+++++|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988888888887666677778888899999999999853 4556678899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
++++.+++.+ ..|...+.... ++.|+++|+||+|+.+... +..+++..++...+. +|+++||+++
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999988 77877777653 4899999999999965443 677888888988887 7999999999
Q ss_pred C-CHHHHHHHHHHHHc
Q 029144 164 Q-NVKAVFDAAIKVVL 178 (198)
Q Consensus 164 ~-~i~~~~~~i~~~~~ 178 (198)
. |++++|..+++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 4 99999999998764
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=2e-32 Score=201.75 Aligned_cols=162 Identities=26% Similarity=0.418 Sum_probs=138.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||+++++.+.+...+.+|..+.....+.+++..+.+.|||++|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888899887777778888989999999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
++++++|+.+ ..|...+... ..+.|+++|+||+|+..... +..+++.+++.......++
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999998 6776666532 24799999999999975433 6777777776544233799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++||++|.|++++|.+|++.+..
T Consensus 150 evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999997744
No 76
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.1e-32 Score=200.08 Aligned_cols=163 Identities=31% Similarity=0.572 Sum_probs=143.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|++|+|||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999988777778776544 5667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +|+++||++
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~ 158 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE 158 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999988 78888887765 4899999999999966543 677788888888887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
|.|++++|+.+++.+..
T Consensus 159 g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 159 ATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987744
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.3e-32 Score=191.78 Aligned_cols=161 Identities=30% Similarity=0.562 Sum_probs=139.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcc-cccccccCCCcEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFL 82 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~i 82 (198)
+.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||+++|. ..+..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 468999999999999999999999988877777775433 4566778888999999999999887 57888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+..... +..+++..++...+. +|+++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence 99999999999999 78888877654 5799999999999976553 677888888888876 7999999
Q ss_pred CC---CCCHHHHHHHHHHHH
Q 029144 161 KT---QQNVKAVFDAAIKVV 177 (198)
Q Consensus 161 ~~---~~~i~~~~~~i~~~~ 177 (198)
++ +.+++++|..+++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998765
No 78
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.7e-32 Score=196.20 Aligned_cols=155 Identities=26% Similarity=0.477 Sum_probs=134.6
Q ss_pred ECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCCh
Q 029144 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK 90 (198)
Q Consensus 12 vG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (198)
+|.+|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888888886444 55567788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144 91 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (198)
.++..+ ..|+..+....++.|+++|+||+|+.... +..+. ..++...++ .|++|||++|.|++++|
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence 999998 78999898877899999999999996422 33333 356777777 79999999999999999
Q ss_pred HHHHHHHcCC
Q 029144 171 DAAIKVVLQP 180 (198)
Q Consensus 171 ~~i~~~~~~~ 180 (198)
.++++.+...
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 79
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=184.92 Aligned_cols=162 Identities=31% Similarity=0.593 Sum_probs=146.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
-+||+++|..|+|||.|+++|..+-+++....|.+.. +-+++.+++..++++||||+|+++|++....+++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 5799999999999999999999999988888888644 578889999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
||+++.++|+-+ .+|+..++.+. ...--++|+||+|+.+.++ ++...+++|+..... .|+|+||++.
T Consensus 87 ydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsakea 154 (213)
T KOG0095|consen 87 YDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKEA 154 (213)
T ss_pred EecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccch
Confidence 999999999988 89999999988 4566689999999988765 888888899888766 6889999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029144 164 QNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (198)
+|++.+|..++-.+..
T Consensus 155 ~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 155 DNVEKLFLDLACRLIS 170 (213)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999998877654
No 80
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=7.2e-32 Score=189.28 Aligned_cols=169 Identities=67% Similarity=1.115 Sum_probs=143.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||++++..+.+...+.++..+.....+..++..+.+.+||+||++.+...+...++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999987777888877777777788888999999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC-CCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD-HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
++++.++......|+..+....++.|+++|+||+|+.+....... ......+..+++.++...++..+|+++||++|.|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999998877888888887778999999999999875431000 0112234577788888888876899999999999
Q ss_pred HHHHHHHHHH
Q 029144 166 VKAVFDAAIK 175 (198)
Q Consensus 166 i~~~~~~i~~ 175 (198)
++++|+++++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 81
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=6.6e-32 Score=188.19 Aligned_cols=161 Identities=38% Similarity=0.700 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999888776666665443 455667777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|++++.+++.+ ..|+..+..+. ++.|+++|+||+|+.+... +..+.+..++...++ +++++||.++.
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999988 67888887765 6899999999999976443 677778888888887 79999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029144 165 NVKAVFDAAIKVVLQ 179 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (198)
|++++|+.+.+.+.+
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988753
No 82
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4e-33 Score=184.81 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=146.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..++++++|.+-+|||+|++.|..+.+.+-..||.+.. +...+.+ ++..+++++|||+||++|++..+.+++|+-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46899999999999999999999999999999999644 4555554 577899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA--PGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
+|||++|.++|+.+ +.|+.....+. |..+ +.+|++|+|+...+. ++.++++.++..++. .|+|+|
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS 154 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS 154 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence 99999999999999 88887777665 4444 478999999987765 999999999999999 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 160 SKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
|++|.|+++.|..+.+.++...++
T Consensus 155 ak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987654443
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.1e-31 Score=186.97 Aligned_cols=160 Identities=36% Similarity=0.653 Sum_probs=139.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776777776544 56677888889999999999999999998999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
+|+++++++... ..|+..+.... ++.|+++++||+|+.+... .+.++...++...+. .++++||++|
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78877777665 6899999999999975432 677788888888886 7999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
.|+.++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 84
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1e-31 Score=187.33 Aligned_cols=159 Identities=32% Similarity=0.569 Sum_probs=134.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccce-eEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+||+++|.+|+|||||++++..+ .+++.+.++.+..+ .....++ +..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67778888886444 3444443 56789999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++.++..+ ..|+..+....++.|+++|+||+|+.+... +...+++.+....+. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999888 788888877666899999999999976543 566666677777776 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029144 163 QQNVKAVFDAAIKVV 177 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (198)
+.|++++|..+++.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999999875
No 85
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=9.1e-32 Score=190.42 Aligned_cols=177 Identities=31% Similarity=0.527 Sum_probs=146.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
.||+++|.+|+|||||++++....+...+.++....+.....+++..+.+.+||+||+++|...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999888878888877777777788888889999999999999898899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
+++..+++.+ ..|...+... . .+.|+++|+||+|+...+. +..++...++...+. +++++||+++.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999998 4544444433 2 4789999999999975432 555666777777776 79999999999
Q ss_pred CHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144 165 NVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL 198 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~ 198 (198)
|+.++|.++.+.+....... ..+.+++|++|
T Consensus 150 gv~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~ 180 (180)
T cd04137 150 NVEEAFELLIEEIEKVENPL---DPGQKKKCSIM 180 (180)
T ss_pred CHHHHHHHHHHHHHHhcCCC---CCCCCCCceeC
Confidence 99999999999887554433 23356679886
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.5e-31 Score=187.90 Aligned_cols=164 Identities=31% Similarity=0.579 Sum_probs=138.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777653 34556678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 86 SLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
|++++.+++.. ..|...+.... .+.|+++|+||+|+.++.. ...++...+....+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999887 66766554433 2799999999999975332 56677778888887558999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 029144 161 KTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++|.|++++|+++.+.+....
T Consensus 150 ~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 150 KEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999887653
No 87
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.8e-31 Score=193.35 Aligned_cols=165 Identities=30% Similarity=0.612 Sum_probs=139.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|.+|+|||||++++..+.+. .+.++.+..+ ...+.+++..+.+.+||+||+++|..++..+++++|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999988764 4566665443 4456677778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++++++.+...|...+.... .+.|+++|+||+|+..... +..++...++...+. +|+++||+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SAk 160 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSAK 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 9999999999998556777666543 4689999999999976543 667778888888887 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029144 162 TQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (198)
++.|++++|.+|.+.+....
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999886543
No 88
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.9e-31 Score=185.43 Aligned_cols=159 Identities=36% Similarity=0.622 Sum_probs=136.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++++..+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988777667665 344666677887888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... ...++...++...+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999998 67777776554 3699999999999965443 677778888888886 79999999999
Q ss_pred CHHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKVV 177 (198)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (198)
|++++|.++.+.+
T Consensus 149 ~v~~l~~~i~~~l 161 (161)
T cd01861 149 NVKELFRKIASAL 161 (161)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 89
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=3.1e-31 Score=184.75 Aligned_cols=160 Identities=35% Similarity=0.618 Sum_probs=139.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||++++..+.+...+.++..+.+.....+++..+.+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888887777777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
++++.++... ..|...+.... .+.|+++|+||+|+.+... ...++...+...++. +++++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999988 55655555542 5899999999999976332 555667777788887 79999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029144 165 NVKAVFDAAIKVVL 178 (198)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (198)
|++++|+++++.+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=3.3e-31 Score=192.92 Aligned_cols=159 Identities=25% Similarity=0.416 Sum_probs=133.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccC-CCcEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFLL 83 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~~~~~i~ 83 (198)
+||+++|.+|+|||||++++..+.+. ..+.++.. +.....+.+++..+.+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 66666665 55567778888889999999999982 23344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...++ +|+++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999988 77877776654 5899999999999976543 677778888888887 79999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|+++++.+..
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 147 LQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998854
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=6.3e-31 Score=182.78 Aligned_cols=159 Identities=35% Similarity=0.657 Sum_probs=135.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|.+|+|||||+++++.+.+...+.++....+ .....+.+..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988766666664433 455666777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|++++++++.. ..|+..+.... .+.|+++|+||+|+..... +..++...++...+. +++++|++++.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999988 77887777665 4789999999999975433 566777778888887 79999999999
Q ss_pred CHHHHHHHHHHHH
Q 029144 165 NVKAVFDAAIKVV 177 (198)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (198)
|++++++++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=8e-31 Score=182.32 Aligned_cols=157 Identities=32% Similarity=0.652 Sum_probs=135.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888776777776544 344556777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... ...++...++...++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999988 66888887764 589999999999997433 566778888888887 7999999999
Q ss_pred CCHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKV 176 (198)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (198)
.|++++++.+++.
T Consensus 148 ~gi~~~~~~~~~~ 160 (161)
T cd01863 148 DGVQQAFEELVEK 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 93
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=189.06 Aligned_cols=163 Identities=36% Similarity=0.617 Sum_probs=150.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.+||+++|.+|+|||+|..+|..+.+.+.|.||..+.+...+.+++..+.+.|+||+|++.|..+...++++++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|+++++.||+.+ ..+...+.+. . ...|+++|+||+|+...+. ++.++++.++..+++ +|+|+||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999999 6776776332 2 4789999999999987655 999999999999999 599999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.+++++|..+++.+-.
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998765
No 94
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-33 Score=186.55 Aligned_cols=166 Identities=36% Similarity=0.606 Sum_probs=146.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC---------CeEEEEEEEeCCCccCccccccccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD---------GSTVNLGLWDTAGQEDYNRLRPLSY 75 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~---------~~~~~l~i~D~~G~~~~~~~~~~~~ 75 (198)
-+|.+.+|.+|+||||++.++..+.+......|.+-.+ .+.+.++ +..+.+++|||+||++|+++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 46889999999999999999999999988888886555 3333332 3569999999999999999999999
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
+.|=+++++||+++..||-.+ ..|+.+++.+. ++.-+|+++||+|+.+.+. ++.+++..++++++.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl- 156 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL- 156 (219)
T ss_pred HhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC-
Confidence 999999999999999999999 88999888765 7899999999999988775 999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
||||+||-+|.|+++..+.+.+.++++.++
T Consensus 157 PYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred CeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999988888765544
No 95
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.7e-30 Score=181.60 Aligned_cols=164 Identities=30% Similarity=0.431 Sum_probs=128.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||++++..+.++..+.++ ...+.....+++..+.+.+||+||++.+...+...+..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999887664433 33334444556677899999999998887777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC-CCEEEEeccCCCCC
Q 029144 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG-APVYIECSSKTQQN 165 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 165 (198)
++++.+++.+...|...+....++.|+++|+||+|+.+... .....++...+..... ..+++++||+++.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS--------QAGLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc--------hhHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 99999999975678888877667899999999999976432 0001223333333332 23799999999999
Q ss_pred HHHHHHHHHHHHcC
Q 029144 166 VKAVFDAAIKVVLQ 179 (198)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (198)
++++|..+.+.+.+
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=2.9e-30 Score=180.86 Aligned_cols=165 Identities=30% Similarity=0.581 Sum_probs=136.6
Q ss_pred CCC-CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCC
Q 029144 1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (198)
Q Consensus 1 m~~-~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 78 (198)
|.+ ...++|+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.|...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 664 4568999999999999999999998877666556654 33344566788888899999999999999888999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 79 DVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..+....+...... ++++
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~ 148 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE 148 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence 999999999999999888 67887776655 4799999999999976543 555666677766665 7999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 029144 158 CSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+||++|.|++++|+++.+.+
T Consensus 149 ~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 149 TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.8e-30 Score=180.12 Aligned_cols=157 Identities=36% Similarity=0.669 Sum_probs=136.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
||+++|++|+|||||++++....+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888888877777777787778999999999999998888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
++++++... ..|...+.... .+.|+++|+||+|+.+... +..+++..++..++. +++++||+++.|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999988 55555555544 4899999999999987443 677888888888886 799999999999
Q ss_pred HHHHHHHHHHH
Q 029144 166 VKAVFDAAIKV 176 (198)
Q Consensus 166 i~~~~~~i~~~ 176 (198)
++++|++|.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=6e-31 Score=184.15 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=121.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+.. +.||.+..+. .... ..+.+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 456899999999999999999998877653 5666654443 2233 34788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----cCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----IGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (198)
|||++++.++......|...+... .++.|+++|+||+|+.+. +..++++..... ..+ .+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~ 149 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNW-YVQP 149 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcE-EEEE
Confidence 999999999988855455555443 357999999999999642 445555554421 223 5899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 029144 158 CSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~ 175 (198)
+||++|.|++++|++|.+
T Consensus 150 ~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 150 SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred eeCCCCCChHHHHHHHhc
Confidence 999999999999999865
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.4e-30 Score=184.74 Aligned_cols=170 Identities=20% Similarity=0.318 Sum_probs=128.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..+||+++|.+|+|||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++++...|..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998877654 46554333 222333 345688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--HcC---CCEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK--LIG---APVY 155 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~ 155 (198)
+|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+. ...++...+.. ... ..++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999988887 56665555432 47999999999999642 33344444332 111 1257
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCCcchHHhh
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQPPKNKKKKK 188 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 188 (198)
+++||+++.|++++|++|++.+...++..+.++
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~ 180 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILKRRKMLRQQK 180 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 899999999999999999999876555544443
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-30 Score=184.04 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=122.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.++||||||++++..+.+. .+.||.+..+. .+..+ .+.+.+||+||++.+..+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35689999999999999999999987775 45677664443 23333 4778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC----CCEEEEe
Q 029144 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG----APVYIEC 158 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (198)
|||+++++++.....++...+... .++.|+++|+||+|+.+. ...++......-.. ...++++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~l~l~~~~~~~~~~~~~ 158 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCceEEEec
Confidence 999999999988844444444432 258999999999999653 23333333221111 1135689
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
||++|+|++++|++|++.+.++
T Consensus 159 Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 159 CATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred cCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999887653
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=9e-30 Score=182.78 Aligned_cols=161 Identities=25% Similarity=0.413 Sum_probs=133.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
||+++|.+|+|||||+++++.+.+...+.++........+.+++..+.+.+||+||+..|..++..++.++|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999888888887666666777888888999999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCCCEEEEeccCCCC
Q 029144 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGAPVYIECSSKTQQ 164 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (198)
+++.+++.+ ..|...+.... .+.|+++|+||+|+.+... .+..++..+... ..+. +++++||++|.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 149 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE 149 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence 999999998 67776666544 4799999999999965311 144444444433 3444 68999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029144 165 NVKAVFDAAIKVVLQ 179 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (198)
|++++|+++++.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (198)
T cd04147 150 NVLEVFKELLRQANL 164 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998754
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=4.5e-31 Score=184.11 Aligned_cols=152 Identities=17% Similarity=0.236 Sum_probs=122.5
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 88 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (198)
|+++|.+|+|||||++++.++.+...+.||.+... ..++...+.+.+||+||++.|...|..+++++|++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999888888888876433 234445588899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH----HHHHHHHHHcCCCEEEEeccCC--
Q 029144 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT----AQGEELRKLIGAPVYIECSSKT-- 162 (198)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~-- 162 (198)
++.++... ..|+..+....+++|+++|+||+|+..... +.. .++..++.+.++ .++++||++
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 146 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG 146 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence 99999888 566666654447899999999999965431 211 123455566666 688888888
Q ss_pred ----CCCHHHHHHHHHH
Q 029144 163 ----QQNVKAVFDAAIK 175 (198)
Q Consensus 163 ----~~~i~~~~~~i~~ 175 (198)
++|++++|+.++.
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999998874
No 103
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=5.9e-30 Score=176.98 Aligned_cols=157 Identities=39% Similarity=0.763 Sum_probs=135.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|++|+|||||++++.++.+...+.+|.+..+ ......++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877667765443 455666777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
|+++++++..+ ..|+..+.... ++.|+++++||+|+..+.. ...++...++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999988 67888888776 6899999999999973332 677888888888776 79999999999
Q ss_pred CHHHHHHHHHH
Q 029144 165 NVKAVFDAAIK 175 (198)
Q Consensus 165 ~i~~~~~~i~~ 175 (198)
|+++++++|.+
T Consensus 149 ~i~~~~~~i~~ 159 (159)
T cd00154 149 NVEELFQSLAE 159 (159)
T ss_pred CHHHHHHHHhC
Confidence 99999999863
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=7e-30 Score=179.92 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=120.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.+||+++|.+|+|||||++++..+.+. .+.||.+..+. ..... .+.+.+||+||++.+...|..+++++|++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4699999999999999999999877764 45677765443 23333 47788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEEe
Q 029144 85 FSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIEC 158 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 158 (198)
||++++.+++.....|...+... .++.|+++|+||+|+.+. .+.++...... ...+ .++++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~ 154 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA------------MKAAEITEKLGLHSIRDRNW-YIQPT 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC------------CCHHHHHHHhCccccCCCcE-EEEEe
Confidence 99999999998844444444433 357999999999999653 22223222211 1122 46789
Q ss_pred ccCCCCCHHHHHHHHHHHHc
Q 029144 159 SSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~ 178 (198)
||++|.|++++|.+|.+.+.
T Consensus 155 Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 155 CATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999988753
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=5.7e-30 Score=177.72 Aligned_cols=152 Identities=15% Similarity=0.215 Sum_probs=116.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||++++..+.+. .+.||.+..+. .+... .+.+.+||+||++++...|..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999888776 46677665442 23333 4778899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHH-HHHHH----HcCCCEEEEecc
Q 029144 87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EELRK----LIGAPVYIECSS 160 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa 160 (198)
++++.++......|...+... ..+.|+++++||+|+.+. ...++. ..+.. ..++ .++++||
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa 143 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNW-YIQATCA 143 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCE-EEEEeeC
Confidence 999999998854455444432 247899999999999642 222222 22211 1222 4779999
Q ss_pred CCCCCHHHHHHHHHH
Q 029144 161 KTQQNVKAVFDAAIK 175 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (198)
++|.|++++|++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999864
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=7.7e-30 Score=178.81 Aligned_cols=157 Identities=16% Similarity=0.256 Sum_probs=122.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
||+++|.+|+|||||++++..+.+.. +.+|.+..+. .+... .+.+.+||+||++.+...|..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987654 6677654443 23343 47788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC-----CCEEEEecc
Q 029144 88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG-----APVYIECSS 160 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa 160 (198)
+++.++... ..|+..+... ..+.|+++|+||+|+.+. ++.+++.+++...+ ...++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999988 5555544432 246899999999999642 45566666554221 115789999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 029144 161 KTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++|.|++++|++|++.+....
T Consensus 144 ~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999998776543
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=7.4e-30 Score=180.77 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=121.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
++.+||+++|++|+|||||++++..+.+.. +.||.+..+. .+... .+.+.+||+||++.+...|..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456899999999999999999998877764 5677665443 23333 4788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-H----HcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-K----LIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 157 (198)
|+|++++.++......+...+... ..+.|+++|+||.|+.+. ...++..... . ...+ .+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~ 157 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNW-YIQG 157 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcE-EEEe
Confidence 999999999998855555444432 257899999999999653 2222222211 1 1122 4678
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+||++|.|++++|++|.+.+.+.
T Consensus 158 ~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 158 CCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877654
No 108
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.9e-32 Score=175.09 Aligned_cols=161 Identities=34% Similarity=0.629 Sum_probs=142.1
Q ss_pred EEECCCCCCHHHHHHHHhhCCCC-CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 10 VTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 10 ~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
+++|.+++|||.|+-++..+.+. .+..+|.+-.+ .+.+..++..+.+++|||+||++|++....+++.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47999999999999888887764 34555665444 45567889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (198)
.|..||+.. +.|+..+..+. ....+.+++||+|+.+++. +..++.+.++..++. ||.|+||++|.|+
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999999 89999999887 5788899999999988765 888999999999999 7999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 029144 167 KAVFDAAIKVVLQPPK 182 (198)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (198)
+-.|..|++.+.+...
T Consensus 149 d~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 149 DLAFLAIAEELKKLKM 164 (192)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 9999999998866444
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=7.6e-29 Score=180.18 Aligned_cols=166 Identities=26% Similarity=0.473 Sum_probs=138.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
.....+||+++|++|+|||||+++++.+.+...+.+|.+..+. ..+..++..+.+.+||++|++.|...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 4556899999999999999999999998888888888865543 334457788999999999999999888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+++|||+++..++..+ ..|+..+....++.|+++++||+|+.+.. ...+ ...++...+. .++++||
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~-~~~~~~~~~~-~~~e~Sa 150 (215)
T PTZ00132 85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKAR-QITFHRKKNL-QYYDISA 150 (215)
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHH-HHHHHHHcCC-EEEEEeC
Confidence 9999999999999988 78888887767789999999999986432 2222 3356666776 7999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 029144 161 KTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++|.|+++.|.+|++.+....
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999886543
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=3.6e-29 Score=176.05 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=118.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|++|+|||||++++....+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4578999999999999999999998754 3455665532 23344554 778899999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-hhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPEL-RHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (198)
|+|++++.++... ..|+..+ ... ..+.|+++|+||+|+.+. ...+++..+.. ..+. +++
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~ 153 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHW-RIQ 153 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCce-EEE
Confidence 9999999999887 4454444 322 268999999999999653 23344444432 2233 799
Q ss_pred EeccCCCCCHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~ 175 (198)
++||++|.|++++|+++++
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999864
No 111
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=164.16 Aligned_cols=164 Identities=31% Similarity=0.600 Sum_probs=147.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+|.+++|.-|+|||+|+.+|...++..+..-|.+..+ ...+.+.+..+.+++||++|+++|+...+.+++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 578999999999999999999999999888888887666 5567789999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|||++.+.++..+ ..|+...+... |+..+++++||.|+...+. ++.+++.+|+.+.|. .|+++||++
T Consensus 90 vyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sakt 157 (215)
T KOG0097|consen 90 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAKT 157 (215)
T ss_pred EEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEecccc
Confidence 9999999999988 77777666654 8999999999999987766 999999999999998 799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
|.++++.|-...+.++..
T Consensus 158 g~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 158 GQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cCcHHHHHHHHHHHHHHh
Confidence 999999998777776543
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=3e-28 Score=171.52 Aligned_cols=154 Identities=20% Similarity=0.276 Sum_probs=118.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
..++|+++|.+|+|||||++++..+.+.. +.+|.+..+. ...+++ +.+.+||+||++.+...|..+++++|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999887765 4566654442 334444 6788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHH-HHHH----HHcCCCEEEEe
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EELR----KLIGAPVYIEC 158 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~ 158 (198)
+|+++++++......+...+.... .+.|+++++||+|+... .+.++. +.+. ...+. +++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~~ 156 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQGC 156 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEec
Confidence 999999988877444544444322 57999999999999652 222332 2221 22333 68999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 029144 159 SSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~ 175 (198)
||++|.|++++|++|.+
T Consensus 157 SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 157 CALTGEGLPEGLDWIAS 173 (174)
T ss_pred ccCCCCCHHHHHHHHhc
Confidence 99999999999999875
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.6e-28 Score=170.77 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=113.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC-CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+|+++|.+|+|||||++++.... ....+.||.+.... .... ..+.+.+||+||++.+..+|..+++++|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 35566777654332 2223 34778899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEE
Q 029144 87 LISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIE 157 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (198)
++++.++... ..|+..+... ..+.|+++|+||+|+.+.. ..++...... .... .+++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~-~~~~ 143 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPW-HIFA 143 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceE-EEEE
Confidence 9999988777 5555544332 1479999999999996532 1222222111 1122 5899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 029144 158 CSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~ 175 (198)
+||++|.|++++|++|.+
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999864
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=9.9e-28 Score=171.57 Aligned_cols=157 Identities=22% Similarity=0.336 Sum_probs=124.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-----CeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
+||+++|..|+|||||++++..+.+.+.+.+|.+..+ ...+.++ +..+.+.+||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888888886444 3334443 567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh-------------------C-CCCCEEEEeecCCcccccccccCCCCCccccH
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHY-------------------A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITT 140 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 140 (198)
+|+|||++++.+++.+ ..|+..+... . ++.|+++|+||+|+.+.+. +..
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~ 149 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSG 149 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cch
Confidence 9999999999999999 7888877653 1 3689999999999976532 333
Q ss_pred H----HHHHHHHHcCCCEEEEeccCCCC----------CHHHHHHHHHH
Q 029144 141 A----QGEELRKLIGAPVYIECSSKTQQ----------NVKAVFDAAIK 175 (198)
Q Consensus 141 ~----~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~ 175 (198)
+ ....++.+.++ +.++.++.+.. .+..+|+.+++
T Consensus 150 ~~~~~~~~~ia~~~~~-~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 150 NLVLTARGFVAEQGNA-EEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred HHHhhHhhhHHHhcCC-ceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 2 34467788888 57778887653 34555555554
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=8e-28 Score=171.65 Aligned_cols=158 Identities=17% Similarity=0.268 Sum_probs=121.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+..+|+++|++|+|||||++++.++.+. .+.+|..... ..+.+++ +.+.+||+||+..+...|..++++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999987763 4556654432 3445555 567799999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc------------
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI------------ 150 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 150 (198)
|+|+++..++......+...+.... .+.|+++++||+|+... +..++.+.+....
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccccc
Confidence 9999999888877444444433222 57999999999999642 4555555554321
Q ss_pred ---CCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 151 ---GAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 151 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
....+++|||++|+|++++|.++.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 112589999999999999999998753
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.9e-28 Score=171.38 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=116.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
+|+++|.+|+|||||++++.++ +...+.+|.+.. ...+..++ +.+++||+||++.+..+|..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 666777777644 23344444 7788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC-EEEEeccCCC-
Q 029144 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP-VYIECSSKTQ- 163 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~- 163 (198)
+++.++..+ ..|+..+.... .+.|+++|+||+|+.+... ....+....+..++.+.+.. .++++||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~------~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALL------GADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCC------HHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999988 66666555432 5899999999999976431 00000000112233233332 5677999998
Q ss_pred -----CCHHHHHHHHHH
Q 029144 164 -----QNVKAVFDAAIK 175 (198)
Q Consensus 164 -----~~i~~~~~~i~~ 175 (198)
.|+++.|+||.+
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999975
No 117
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1e-27 Score=168.76 Aligned_cols=158 Identities=22% Similarity=0.343 Sum_probs=124.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..+.++|+++|..|+||||+++++..+.... ..||.+... ..+.+++ +.+.+||.+|+..++..|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4788999999999999999999998776433 556655443 3344555 66789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH------cCCCEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL------IGAPVY 155 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 155 (198)
||+|.++.+.+.+....+...+.... .++|++|++||+|+.+. .+.++....... ..+ .+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~-~v 153 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPW-SV 153 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCE-EE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCce-EE
Confidence 99999999988888555555555433 68999999999999764 444444443321 222 57
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 029144 156 IECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+.|||.+|+|+.+.++||.+.+
T Consensus 154 ~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 154 FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHhcC
Confidence 8899999999999999999864
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=7.3e-28 Score=167.01 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=112.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
||+++|.+++|||||++++..+.+.. +.+|.+..+. ..... .+.+.+||+||++.+...|..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877653 4555544332 23333 46788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHH----HHcCCCEEEEeccC
Q 029144 88 ISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELR----KLIGAPVYIECSSK 161 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~ 161 (198)
+++.++......|...++.. ..+.|+++|+||+|+.+.. ...+.. .+. ...+. +++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeecc
Confidence 99988877645555444432 2579999999999996532 112221 111 11123 69999999
Q ss_pred CCCCHHHHHHHHHH
Q 029144 162 TQQNVKAVFDAAIK 175 (198)
Q Consensus 162 ~~~~i~~~~~~i~~ 175 (198)
+|.|++++|+++++
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999875
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.4e-27 Score=165.81 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=113.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
+|+++|.+|+|||||++++..+.+... .+|.+..+. .+.. +..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999887643 455543332 2223 2347889999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH------HHHcCCCEEEEecc
Q 029144 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL------RKLIGAPVYIECSS 160 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa 160 (198)
+++.++......+...+.... .+.|+++|+||+|+... ...++.... ....+. +++++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa 144 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRDW-YVQPCSA 144 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCcE-EEEeccc
Confidence 999988888444444433322 58999999999999642 122222221 112233 6899999
Q ss_pred CCCCCHHHHHHHHHH
Q 029144 161 KTQQNVKAVFDAAIK 175 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (198)
++|+|++++|++|.+
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999999864
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=2.2e-27 Score=165.91 Aligned_cols=151 Identities=21% Similarity=0.335 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC------CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
+|+++|++|+|||||++++..... ...+.+|....+ ..+.+++ ..+.+||+||++.+...+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999876432 223344443333 2344454 6778999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-------cCC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-------IGA 152 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 152 (198)
++|+|+++++++... ..|+..+... . .+.|+++|+||+|+.+. ...++...+... .+.
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence 999999999888887 4454444332 2 58999999999998653 233344433322 233
Q ss_pred CEEEEeccCCCCCHHHHHHHHHH
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
+++++||++|.|+++++++|++
T Consensus 145 -~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 -LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred -EEEEeeCCCCcCHHHHHHHHhc
Confidence 6999999999999999999875
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=4.5e-27 Score=166.89 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=118.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++.++.+.. +.||..... ..+.+++ +.+.+||+||++.+...|..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999876543 344443322 2333444 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----------cC
Q 029144 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----------IG 151 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 151 (198)
|+|+++++++......+...+... ..+.|+++|+||+|+... ++.++..+.... .+
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence 999999999888744444433322 258999999999999642 344444433211 12
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
...++++||+++.|+++++++|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 3358999999999999999999865
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1e-26 Score=161.18 Aligned_cols=150 Identities=20% Similarity=0.276 Sum_probs=114.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
||+++|.+|+|||||++++.+... ..+.++.+.... ...+.+ +.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998873 444555543332 233443 6788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEEecc
Q 029144 88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIECSS 160 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa 160 (198)
++++++... ..++..+... ..+.|+++|+||+|+.... ..++...... .... +++++||
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa 142 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRW-HIQPCSA 142 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcE-EEEEeeC
Confidence 999999888 4444443332 2589999999999997532 2223332222 1233 7999999
Q ss_pred CCCCCHHHHHHHHHH
Q 029144 161 KTQQNVKAVFDAAIK 175 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (198)
++|.|++++|++|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 123
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-29 Score=169.68 Aligned_cols=167 Identities=33% Similarity=0.503 Sum_probs=152.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+|++++|..++||||++++++.+.|...|..|++..+ .....+....+.+.+||++|+++|+.....+++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 678999999999999999999999999999999996555 5556677777888899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
||+-+|..||+.. ..|.+.+......+|.++|-||+|+.++.. +..++++.++..... .++.+|++..
T Consensus 99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked 166 (246)
T KOG4252|consen 99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKED 166 (246)
T ss_pred EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhh
Confidence 9999999999999 899999999999999999999999998775 889999999999987 6899999999
Q ss_pred CCHHHHHHHHHHHHcCCCcc
Q 029144 164 QNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~~~ 183 (198)
.|+.++|..+++.+....++
T Consensus 167 ~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999988665444
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=173.13 Aligned_cols=146 Identities=19% Similarity=0.315 Sum_probs=118.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-------------CeEEEEEEEeCCCccCccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~G~~~~~~ 69 (198)
...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.++|||++|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3578999999999999999999999998888888887554 3445553 2568899999999999999
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCcccccccccCCCCCc
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLDLRDDKQFLADHPGAV 136 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 136 (198)
++..++++++++|+|||+++..+++.+ ..|+..+.... .++|++||+||+|+.+... .....
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~s 173 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGSS 173 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----ccccc
Confidence 999999999999999999999999999 88988888652 2589999999999965320 00111
Q ss_pred cccHHHHHHHHHHcCCCE
Q 029144 137 PITTAQGEELRKLIGAPV 154 (198)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~ 154 (198)
.+..+++++++.+.++.+
T Consensus 174 ~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 174 GNLVDAARQWVEKQGLLP 191 (334)
T ss_pred cccHHHHHHHHHHcCCCc
Confidence 136789999999987644
No 125
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=3.6e-26 Score=160.66 Aligned_cols=143 Identities=30% Similarity=0.510 Sum_probs=121.9
Q ss_pred CCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhh
Q 029144 29 NTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY 107 (198)
Q Consensus 29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (198)
+.|.+.+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 456778889987555 56678888899999999999999999999999999999999999999999998 6787776554
Q ss_pred C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 108 A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 108 ~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
. ++.|+++|+||+|+.+... +..+++..++..++. .|+++||++|.|++++|.+|++.+......
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 4 6789999999999975433 677888888888887 799999999999999999999998664433
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=6.5e-26 Score=150.65 Aligned_cols=160 Identities=18% Similarity=0.272 Sum_probs=127.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+++++|+++|..|+|||||+++|.+.. .+...||.+..+.. ..+++ +.+++||.+||..+++.|++++...|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt-l~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT-LEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE-EEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3568999999999999999999998876 44455666544433 33444 78889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHH------HHHHHHHHcCCCEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTA------QGEELRKLIGAPVY 155 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 155 (198)
+|+|.+|+..+++....+...+.... .+.|+++++||.|+... ++.+ ...+++....+ +.
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~------------l~~~~i~~~~~L~~l~ks~~~-~l 155 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA------------LSLEEISKALDLEELAKSHHW-RL 155 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc------------cCHHHHHHhhCHHHhccccCc-eE
Confidence 99999999888887555555444333 58999999999999854 2222 23445566677 78
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+.||+.+|+++.+.++|+.+.+..
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEEeccccccHHHHHHHHHHHHHH
Confidence 999999999999999999987765
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.1e-25 Score=157.55 Aligned_cols=155 Identities=22% Similarity=0.222 Sum_probs=105.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc---------cccCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYRG 77 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------~~~~~ 77 (198)
+|+++|.+|+|||||++++.+..+... +..++..........+ .+.+++|||||+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999998876322 2222222222222223 36788999999843211100 01123
Q ss_pred CcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 78 ADVFLLAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
+|++++|+|+++..++ +.. ..|+..+.....+.|+++|+||+|+..... +. +...+....+. ++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~~ 145 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-EV 145 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-ce
Confidence 6899999999987653 444 467777766556899999999999965432 22 13444444444 79
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+++||++|.|++++|+++.+.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 146 LKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred EEEEecccCCHHHHHHHHHHHhC
Confidence 99999999999999999998763
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.2e-25 Score=155.43 Aligned_cols=151 Identities=24% Similarity=0.327 Sum_probs=116.1
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI 88 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (198)
|+++|++|+|||||++++.+..+...+.++.+..+.. ...++ +.+.+||+||+..+...+..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7999999999999999999998888888887655443 33343 77889999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEEEeccCC
Q 029144 89 SKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIECSSKT 162 (198)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~ 162 (198)
+..++......+...+.... .+.|+++|+||+|+.+.. ..++..... ..... +++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 145 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL------------SVDELIEQMNLKSITDREV-SCYSISCKE 145 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc------------CHHHHHHHhCcccccCCce-EEEEEEecc
Confidence 99888877444444333322 578999999999986532 111111111 11223 689999999
Q ss_pred CCCHHHHHHHHHH
Q 029144 163 QQNVKAVFDAAIK 175 (198)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (198)
+.|+++++++|++
T Consensus 146 ~~gi~~l~~~l~~ 158 (159)
T cd04159 146 KTNIDIVLDWLIK 158 (159)
T ss_pred CCChHHHHHHHhh
Confidence 9999999999976
No 129
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-26 Score=157.02 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=131.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..++.+|+++|..++||||++.++..+++... .||.+..+.. +.+. .+.+.+||.+||+.++..|.+++++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 45789999999999999999999999988776 7888766544 3344 488889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----cCCCEEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----IGAPVYI 156 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (198)
||+|.+|++-+.++..++...+.... .+.|+++.+||.|++.. .+..+....... ..+ .+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w-~iq 156 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNW-HIQ 156 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCc-EEe
Confidence 99999999999999777777777665 68999999999999875 343333332222 233 355
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.++|.+|+|+.+.++++.+.+...
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred eccccccccHHHHHHHHHHHHhcc
Confidence 699999999999999999987653
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=8.1e-26 Score=159.75 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=111.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC-------CCCCCCCcc------ccce-eE--EEEE---CCeEEEEEEEeCCCccCcc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNF-SA--NVVV---DGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~-------~~~~~~~t~------~~~~-~~--~~~~---~~~~~~l~i~D~~G~~~~~ 68 (198)
+|+++|.+++|||||+++|+... +...+.++. +..+ .. ...+ ++..+.+.+|||||++.|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 112222222 1111 11 1222 5567889999999999999
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK 148 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (198)
..+..+++.+|++++|+|++++.+.... ..|.... . .++|+++|+||+|+.+.. ..+...+++.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 9888899999999999999987766655 4443322 2 378999999999996421 1222344455
Q ss_pred HcCCC--EEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 149 LIGAP--VYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 149 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
..+.. .++++||++|.|++++|+++.+.+.
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 55542 4899999999999999999998763
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=5.1e-25 Score=154.86 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=112.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|++|+|||||++++.+..+. .+.++.+... ..+..++ ..+.+||+||+..+...+..+++++|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 35789999999999999999999987653 3445544322 2344455 567799999998888888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc----CCCEEEEe
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI----GAPVYIEC 158 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (198)
|+|+++..++......+...+.... .+.|+++++||+|+.+.. ..++........ ...+++++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAEEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHHHHHHHcCCcccCCCeEEEEEe
Confidence 9999998888877444444433322 479999999999996532 112221111110 11147899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 029144 159 SSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~ 175 (198)
||++|+|++++|++|++
T Consensus 156 Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 156 SAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999975
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1.4e-24 Score=149.78 Aligned_cols=156 Identities=37% Similarity=0.534 Sum_probs=120.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+||+++|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||+..+...+...+++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998887666666554443 44456777668889999999999998888888999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|.... .++......|...+..... +.|+++++||+|+.... .. ..........+..+++++||.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~-~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LK-THVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hh-HHHHHHHhhccCCceEEeecCC
Confidence 998877 6666664466666666554 89999999999996532 12 2333333444444799999999
Q ss_pred CCCHHHHHHHH
Q 029144 163 QQNVKAVFDAA 173 (198)
Q Consensus 163 ~~~i~~~~~~i 173 (198)
+.|+.++|++|
T Consensus 149 ~~gv~~~~~~l 159 (161)
T TIGR00231 149 GKNIDSAFKIV 159 (161)
T ss_pred CCCHHHHHHHh
Confidence 99999999886
No 133
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=158.80 Aligned_cols=178 Identities=34% Similarity=0.550 Sum_probs=138.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+||+++|++|+|||||++++..+.+...+.+|.+..+...... ....+.+.+||++|+++|+..+..++.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999987666555444 33478899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCC--ccccHHHHHHHHHHc--CCCEEEEec
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGA--VPITTAQGEELRKLI--GAPVYIECS 159 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~S 159 (198)
+|..+..++.+....|...+.... .+.|+++++||+|+.........-... +....+......... ....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999997777777799999999887 479999999999998764211000000 112222222222222 222489999
Q ss_pred cC--CCCCHHHHHHHHHHHHcCCCcc
Q 029144 160 SK--TQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 160 a~--~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
++ .+.++.++|..+++.+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 99 9999999999999988654443
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=9e-25 Score=153.10 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=108.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccC----cccccccc---cCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~---~~~~~ 79 (198)
+|+++|.+|+|||||++++.+.... ..+..++.......+.+++. ..+.+|||||+.. +..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999865431 12222222222222333332 3678999999742 22222233 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCE
Q 029144 80 VFLLAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPV 154 (198)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (198)
++++|+|++++ .+++.. ..|.+.+.... .+.|+++|+||+|+.+.. ...+....+.... +. +
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~ 147 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEE-----------ELFELLKELLKELWGK-P 147 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCch-----------hhHHHHHHHHhhCCCC-C
Confidence 99999999998 788777 67777776554 378999999999996643 2233344444443 44 6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
++++||+++.|++++|+++.+.+
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhhC
Confidence 89999999999999999998753
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.1e-25 Score=153.36 Aligned_cols=135 Identities=26% Similarity=0.275 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc-----CcccccccccCCCcEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFL 82 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~~~~~i 82 (198)
||+++|.+|+|||||++++.+..+. +.+|.. ..+.. .+||+||+. .|..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987642 223321 11211 589999973 2333333 478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++.++... .|...+ ..|+++|+||+|+.+.. ...+++.++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 99999999987543 444332 24999999999996532 3456667777777765799999999
Q ss_pred CCCHHHHHHHHH
Q 029144 163 QQNVKAVFDAAI 174 (198)
Q Consensus 163 ~~~i~~~~~~i~ 174 (198)
+.|++++|.++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999998874
No 136
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=8.2e-26 Score=147.53 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=129.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.++.+.++|..++|||||++....+.+.+.-.||.+.++.. ++...+.+.+||.||+.+|+++|..+.+.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 35789999999999999999999888877777777655433 555668888999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-----HHHHcCCCEEEEe
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-----LRKLIGAPVYIEC 158 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 158 (198)
+|+.+++.+...+.++.+.+.+.. .++|+++.+||.|++... +...+.. -..+... .+|.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~~~li~rmgL~sitdREv-cC~si 162 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SKIALIERMGLSSITDREV-CCFSI 162 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cHHHHHHHhCccccccceE-EEEEE
Confidence 999999999998888888888776 799999999999998753 3222221 1112222 48899
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 029144 159 SSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~ 177 (198)
|+++..|++-+.+|+++.-
T Consensus 163 Scke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 163 SCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEcCCccHHHHHHHHHHHh
Confidence 9999999999999999864
No 137
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=5.4e-24 Score=163.74 Aligned_cols=163 Identities=16% Similarity=0.244 Sum_probs=114.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCccC-cccccc-----
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP----- 72 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~----- 72 (198)
|+..+.++|+++|.+|+|||||+++|.+..+.. +...|+.......+..++ ..+.||||||+.. +..+..
T Consensus 47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence 344567899999999999999999999876632 223344444455556666 4567999999843 332221
Q ss_pred --cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 73 --LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
..+.++|++++|+|..+. +......|+..+... +.|.++|+||+|+.+. ...++.++....
T Consensus 125 ~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~ 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTEN 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhc
Confidence 236789999999997653 334434566666554 6788899999999542 123444444444
Q ss_pred C-CCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 151 G-APVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 151 ~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+ ...++++||++|.|++++|++|.+.+.....
T Consensus 188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 188 HPDSLLFPISALSGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCC
Confidence 3 3479999999999999999999998866543
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.6e-24 Score=150.77 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=100.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC---CCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~---~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+.|+++|.+|+|||||++++.+. .+...+.++. .+.......+.+ ...+.+|||||+++|.......++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999863 2222222222 111122333431 357889999999988766667788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH---cCCCEEEEec
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL---IGAPVYIECS 159 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S 159 (198)
+|+|+++....+.. ..+..+... ...|+++|+||+|+.+... .....++..+.... .+. +++++|
T Consensus 80 ~V~d~~~~~~~~~~--~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~S 147 (164)
T cd04171 80 LVVAADEGIMPQTR--EHLEILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADA-PIFPVS 147 (164)
T ss_pred EEEECCCCccHhHH--HHHHHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCC-cEEEEe
Confidence 99999873211111 111222222 2349999999999965321 00122333444433 234 799999
Q ss_pred cCCCCCHHHHHHHHHH
Q 029144 160 SKTQQNVKAVFDAAIK 175 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~ 175 (198)
|+++.|++++++.+.+
T Consensus 148 a~~~~~v~~l~~~l~~ 163 (164)
T cd04171 148 AVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998764
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=4.2e-24 Score=160.07 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=113.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-c-------ccccccCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG 77 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~~ 77 (198)
+|+++|.+|+|||||+|++.+..+. .+...|+..........++ ..+.+|||||..... . .....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999987643 3444566554444443444 457899999975432 1 12345688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+.+.. ...+....+....+..++++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence 99999999999876654 3445555554 79999999999996432 22234445555555557899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+||++|.|++++++.+.+.+.....
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999998865443
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=3.8e-24 Score=163.63 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=116.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCcc----ccc---ccccCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYN----RLR---PLSYRG 77 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~----~~~---~~~~~~ 77 (198)
..|.+||.|++|||||++++..... ...|..|+.......+.+ ++ ..+.+||+||...-. .+. ...++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4799999999999999999987532 344555665554444555 33 346799999974311 122 224557
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++++++|+|+++.++++.. ..|...+..+. .+.|+++|+||+|+.+... ...+....+....+. +
T Consensus 237 a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~ 304 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-P 304 (335)
T ss_pred cCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-C
Confidence 8999999999988788877 78888887764 3789999999999975432 333344444455555 6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++++||++++|+++++++|.+.+..
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999988754
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-24 Score=138.74 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=128.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.++++|+++|..++||||++..+..+... ...||.+..+.. +++ +.+.+++||.+|++..+.+|++++.+..++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvet-Vty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET-VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEE-EEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 46899999999999999999999988753 446666654433 344 44888899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (198)
|+|..+.+..++++.++...+...- .+.|++|.+||.|++... +..++..+. +...+ -+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W-~vqp 157 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNW-YVQP 157 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCcc-Eeec
Confidence 9999999999999899998888765 789999999999998753 333433322 22333 3557
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 029144 158 CSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+||.+|+|+.+-|.++.+.+.
T Consensus 158 ~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccccchhHHHHHHHHHhhcc
Confidence 999999999999999998764
No 142
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-23 Score=137.84 Aligned_cols=168 Identities=24% Similarity=0.315 Sum_probs=142.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCc-ccccccccCCCcE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-~~~~~~~~~~~~~ 80 (198)
+..||+++|..++|||+|+.+++.+. ...++.+|..+.+...+.. ++..-.+.++||.|...+ ..+.++++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 56899999999999999999988654 3456778888888776654 455667889999998877 6778889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+++||+..|++||+.. ..+...|.+.. ..+|+++.+||+|+.++.. +..+.++.|+..-.. ..+++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999988 66666676654 4799999999999987665 888999999998877 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (198)
++.+..++-+.|..+...+..+..+.
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCcccc
Confidence 99999999999999999998877654
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=4e-24 Score=154.20 Aligned_cols=154 Identities=20% Similarity=0.204 Sum_probs=107.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCc---------ccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~ 74 (198)
..++|+++|++|+|||||++++.+..+.. ....++.......+.+++. ..+.+||+||.... ...+ ..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 45799999999999999999999876322 2112222222333344432 36779999997321 1111 12
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
+.++|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+... . .......+.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~- 180 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP- 180 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC-
Confidence 5689999999999998887766 56666665543 4789999999999966432 1 133334444
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+++++||+++.|+++++++|.+.+
T Consensus 181 ~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 181 DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 699999999999999999998753
No 144
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=8e-24 Score=147.96 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=107.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.|+++|.+|+|||||++++..+.+...+.++..... ...+... .....+.+|||||+..|...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876654333332222 1222222 12467889999999998888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH----Hc-CCCEEEEecc
Q 029144 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK----LI-GAPVYIECSS 160 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa 160 (198)
|+++....... ..+..+... +.|+++|+||+|+..... .........+.. .. ...+++++||
T Consensus 82 d~~~~~~~~~~--~~~~~~~~~--~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKAA--NVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHHH--HHHHHHHHc--CCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence 99885432222 222333333 789999999999964321 001111111111 11 1136899999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 029144 161 KTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~ 178 (198)
+++.|++++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999988653
No 145
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=9.7e-24 Score=145.79 Aligned_cols=147 Identities=22% Similarity=0.219 Sum_probs=106.3
Q ss_pred EEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc--------ccccccCCCc
Q 029144 10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (198)
Q Consensus 10 ~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~~~ 79 (198)
+++|.+|+|||||++++.... +.....+++..........++ ..+.+|||||+..+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764 333444555555555555555 5677999999987544 2334578899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 80 VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
++++|+|+.++.+.... .+...+... +.|+++|+||+|+.+... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 99999999876555433 344445444 699999999999976432 1 2223345554689999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 029144 160 SKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~ 177 (198)
++++.|++++++++++.+
T Consensus 140 a~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 140 AEHGRGIGDLLDAILELL 157 (157)
T ss_pred cccCCCHHHHHHHHHhhC
Confidence 999999999999998753
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.2e-23 Score=142.60 Aligned_cols=152 Identities=41% Similarity=0.750 Sum_probs=116.0
Q ss_pred EECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCC
Q 029144 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS 89 (198)
Q Consensus 11 vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (198)
++|++|+|||||++++..... .....++.................+.+||+||+..+...+...++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998876 4555555544455555666667889999999998888887888899999999999999
Q ss_pred hhhHHHHHHHH--HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH-HHHHHHHcCCCEEEEeccCCCCCH
Q 029144 90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ-GEELRKLIGAPVYIECSSKTQQNV 166 (198)
Q Consensus 90 ~~s~~~~~~~~--~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i 166 (198)
+.+.... ..| .........+.|+++++||+|+..... ..... ......... .+++++|+.++.|+
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence 9988888 444 222333346899999999999976532 12111 233333344 47999999999999
Q ss_pred HHHHHHHH
Q 029144 167 KAVFDAAI 174 (198)
Q Consensus 167 ~~~~~~i~ 174 (198)
++++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999886
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=3.1e-23 Score=143.54 Aligned_cols=147 Identities=15% Similarity=0.234 Sum_probs=106.1
Q ss_pred EECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc------ccccc--CCCcEE
Q 029144 11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 81 (198)
Q Consensus 11 vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~ 81 (198)
++|.+|+|||||++++.+.... ..+..++.......+.+++ ..+.+|||||+..+... +..++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999887533 2333344444445566665 46789999999876643 34445 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
++|+|+++++... .+...+... +.|+++|+||+|+.+... +. .....+....+. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence 9999998865432 233334333 799999999999976432 22 233456666676 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029144 162 TQQNVKAVFDAAIKVV 177 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (198)
++.|++++++++.+.+
T Consensus 141 ~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 141 KGEGIDELKDAIAELA 156 (158)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998864
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.6e-23 Score=167.89 Aligned_cols=161 Identities=20% Similarity=0.196 Sum_probs=115.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC----------ccccc-
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~- 71 (198)
..++|+++|.+|+|||||++++++... .....+++.+.....+.+++..+ .+|||||..+ |....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998754 44555666666666677777554 5999999632 22222
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
..+++++|++++|+|++++.++.+. .++..+... +.|+++|+||+|+.+... ......+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence 2356899999999999999888776 344455443 899999999999965321 0011122222222223
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
..+++++||++|.|++++|..+.+.+..
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999987743
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=4.1e-23 Score=147.81 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=99.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh--CCCCCCCC------------Cccccce-eEEEEECCeEEEEEEEeCCCccCccccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 71 (198)
-+|+++|.+++|||||+++++. +.+...+. .+.+..+ .....+....+.+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 55544321 1111111 1222333445788899999999999999
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH--
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-- 149 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (198)
..+++++|++++|+|+++... ... ..++..+... ++|+++|+||+|+..... ....++...+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALEL--GLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG 149 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 999999999999999987432 222 3334444333 789999999999965321 0123344444322
Q ss_pred -----cCCCEEEEeccCCCCCHH
Q 029144 150 -----IGAPVYIECSSKTQQNVK 167 (198)
Q Consensus 150 -----~~~~~~~~~Sa~~~~~i~ 167 (198)
.+. +++++||++|.|+.
T Consensus 150 ~~~~~~~~-~iv~~Sa~~g~~~~ 171 (194)
T cd01891 150 ATEEQLDF-PVLYASAKNGWASL 171 (194)
T ss_pred CccccCcc-CEEEeehhcccccc
Confidence 245 68999999997663
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=8.9e-24 Score=152.06 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=102.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC-----------ccCccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPL 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~ 73 (198)
..++|+++|.+|+|||||++++.+..+...+.++.... .....+. .+.+||||| ++.+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 56899999999999999999999877654433433211 1222222 477999999 3455554444
Q ss_pred cc----CCCcEEEEEEECCChhhHH---------HHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH
Q 029144 74 SY----RGADVFLLAFSLISKASYE---------NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT 140 (198)
Q Consensus 74 ~~----~~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 140 (198)
++ ..++++++|+|.++..... .....+...+... ++|+++|+||+|+.+.. .
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-------------~ 147 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-------------D 147 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-------------H
Confidence 44 3457888899886532210 0112233344333 89999999999996431 1
Q ss_pred HHHHHHHHHcCC--------CEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 141 AQGEELRKLIGA--------PVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 141 ~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
+...++....+. .+++++||++| |+++++++|.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 233444444443 14799999999 99999999999875443
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=2.8e-23 Score=137.27 Aligned_cols=114 Identities=33% Similarity=0.573 Sum_probs=87.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
||+|+|.+|+|||||+++|.+.... ..+.++....+ .....+......+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12223333333 23445666666689999999999988888889999999999
Q ss_pred EECCChhhHHHHHH--HHHHHHhhhCCCCCEEEEeecCC
Q 029144 85 FSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLD 121 (198)
Q Consensus 85 ~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~iiv~nK~D 121 (198)
||++++.+++.+.. .|+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999998732 25666666667899999999998
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.4e-23 Score=166.06 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=111.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--------cccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~ 74 (198)
...+|+++|.+|+|||||++++.+... ......++.+.......+++. .+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 346899999999999999999998753 233334444555555666664 467999999763 22334456
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++++|++++|+|++++.+... ..+...+... ++|+++|+||+|+.... .+....+ ..+...
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~ 175 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALW--SLGLGE 175 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence 789999999999998876654 3555666654 89999999999996421 1111222 233334
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+++||++|.|++++|+++++.+..
T Consensus 176 ~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 176 PHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred eEEEEcCCCCCcHHHHHHHHhhccc
Confidence 5799999999999999999998855
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=1e-22 Score=155.61 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=112.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc----cccccc---cCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPLS---YRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~~~~~---~~~ 77 (198)
...|+++|.+++|||||++++..... ..+|..|+.......+.+++ ...+.+||+||..... .+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35899999999999999999997642 33444555444444444543 2456799999974322 222223 456
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 78 ADVFLLAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
++++++|+|+++. +.++.. ..|...+..+. .+.|+++|+||+|+.+.. ...+..+.+.+..+
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG 303 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence 9999999999976 566666 66766666553 478999999999996542 22334455666666
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
. +++++||++++|+++++.++.+.+
T Consensus 304 ~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 K-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 5 699999999999999999998765
No 154
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=3.9e-23 Score=140.69 Aligned_cols=147 Identities=19% Similarity=0.258 Sum_probs=105.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc------ccccc--CC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RG 77 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~ 77 (198)
++|+++|.||+|||||+|++.+... ..++..++.+.....+.+.+ ..+.++|+||....... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999998753 34566777666667777777 45569999996443321 22233 57
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
.|++++|+|+++.+ .. ..+..++... ++|+++|+||+|..+... +.. +...+.+..+. +++.
T Consensus 79 ~D~ii~VvDa~~l~---r~-l~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~i-d~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RN-LYLTLQLLEL--GIPVVVVLNKMDEAERKG----------IEI-DAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHH---HH-HHHHHHHHHT--TSSEEEEEETHHHHHHTT----------EEE--HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHH---HH-HHHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CEE-CHHHHHHHhCC-CEEE
Confidence 99999999998743 22 2445555555 899999999999987654 332 35677777888 7999
Q ss_pred eccCCCCCHHHHHHHH
Q 029144 158 CSSKTQQNVKAVFDAA 173 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i 173 (198)
+||++++|++++++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999875
No 155
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=8.7e-23 Score=157.33 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=108.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC---------cccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~ 74 (198)
..++|+++|.+|+|||||+|++.+... ..+...++.+.....+.+.+. ..+.+|||||..+ |.+.+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 358999999999999999999998754 234444555555566666332 4677999999722 22222 24
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+... + .... . +..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCC
Confidence 6789999999999998877765 55555555443 4789999999999964321 1 1111 1 223
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
+++++||++|.|+++++++|.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=1.1e-22 Score=160.95 Aligned_cols=150 Identities=22% Similarity=0.241 Sum_probs=113.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 74 (198)
..++|+++|.+|+|||||++++.+.. +..++.+|+.+.....+.+++ ..+.+|||||+..+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999864 456677777777777777877 44579999998655432 2346
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+. +...+....+. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence 7899999999999998876643 5444443 37899999999999542 11233445555 6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++++||++ .|++++|+.+.+.+..
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHH
Confidence 88999998 6999999988887754
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=3e-22 Score=159.53 Aligned_cols=158 Identities=23% Similarity=0.257 Sum_probs=113.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 71 (198)
..++|+++|.+++|||||++++++.. ...+..+|+.+.....+..++. .+.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 46899999999999999999999764 3445556666666566666664 56799999986654332
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHH---
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELR--- 147 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~--- 147 (198)
...++.+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.+.. ...++.. .+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL 313 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence 2357889999999999988777665 444454444 79999999999997221 1122222 111
Q ss_pred HHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 148 KLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
...+..+++++||++|.|++++|+++.+.+..
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22233479999999999999999999887643
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.6e-22 Score=143.88 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-----------------ccceeEEEEECCeEEEEEEEeCCCccCcccc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (198)
+|+++|.+|+|||||++++...........+. ........... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999876554332211 11111122223 367889999999988888
Q ss_pred cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
+...++.+|++++|+|+.++.+.... .++..+.. .+.|+++|+||+|+..... .....++.++.....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~ 146 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI 146 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence 88888999999999999887654433 44444444 3899999999999975221 001223333333332
Q ss_pred C-------------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 151 G-------------APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 151 ~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+ ..+++++||++|.|+++++.++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2 247999999999999999999998874
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1e-22 Score=143.34 Aligned_cols=152 Identities=25% Similarity=0.284 Sum_probs=103.4
Q ss_pred EECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCc----cccc---ccccCCCcEE
Q 029144 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF 81 (198)
Q Consensus 11 vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~----~~~~---~~~~~~~~~~ 81 (198)
++|++|+|||||++++.+... ...+..++.......+.++ + ..+.+||+||.... ..++ ...++++|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 2334444433333334455 4 45679999997332 2222 2246789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 82 LLAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
++|+|+.+. .++... ..|...+.... .+.|+++|+||+|+..... ..........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~ 147 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA 147 (176)
T ss_pred EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence 999999988 466665 55555554332 3799999999999975432 2222122333
Q ss_pred HHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 148 KLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
...+. .++++||+++.|++++++++.+.
T Consensus 148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEGA-EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence 33444 69999999999999999998764
No 160
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.9e-22 Score=138.33 Aligned_cols=145 Identities=26% Similarity=0.326 Sum_probs=105.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccccC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~ 76 (198)
++|+++|++|+|||||++++..... .....+++.........+++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999997753 23333444443344444554 56779999998665422 123567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
.+|++++|+|++++.+.... ..+.. ..+.|+++|+||+|+.+... . .....+. +++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~~-~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAGK-PII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCCC-ceE
Confidence 89999999999988777665 32222 34799999999999976542 1 2233343 799
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
++||+++.|+++++.+|.+.+
T Consensus 136 ~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 999999999999999998754
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.2e-22 Score=161.43 Aligned_cols=148 Identities=24% Similarity=0.292 Sum_probs=112.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 74 (198)
..++|+++|.+|+|||||++++.+.. +..++.+++.+.....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999865 355666677776677777776 45679999998654432 1235
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
+.++|++++|+|++++.+++.. ..|.. ..+.|+++|+||+|+.+... .. ...+. +
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~~-~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENGK-P 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccCC-c
Confidence 7889999999999998877654 44432 34789999999999965421 11 22333 6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++++||++|.|++++++++.+.+..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998754
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=8.3e-22 Score=138.15 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=105.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-----------cc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~~ 72 (198)
+++|+++|.+|+|||||++++.+... ......++.......+..++. .+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 68999999999999999999987643 223333444444444555654 4569999997543211 11
Q ss_pred cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHHHc-
Q 029144 73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRKLI- 150 (198)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 150 (198)
..+..+|++++|+|++++.+.... .+...+... +.|+++++||+|+.+... ...+... .+....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 145 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence 245689999999999998776543 333444333 799999999999976421 1222222 222222
Q ss_pred --CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 151 --GAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 151 --~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
+..+++++||+++.|++++++++.+.
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 23479999999999999999998764
No 163
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.2e-22 Score=140.07 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=105.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCC--CCCccccceeEEEEECCeEEEEEEEeCCCccCccc--------cccccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSY 75 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~ 75 (198)
..+|+++|.+|+|||||++++.+...... ...+........ .......+.+||+||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999987654221 112222222222 222236677999999754432 223457
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+..... ...+....+....+..++
T Consensus 81 ~~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~ 146 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI 146 (168)
T ss_pred HhCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence 789999999999987222 213444555544 789999999999974321 233334444445544579
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 029144 156 IECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+++|++++.|++++++.|.+.+
T Consensus 147 ~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 147 FPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred EEEEeccCCChHHHHHHHHhhC
Confidence 9999999999999999997753
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=2.7e-22 Score=163.13 Aligned_cols=153 Identities=17% Similarity=0.237 Sum_probs=108.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+..+|+++|+.++|||||++++....+...+.+.....+ ...+.+++. ..+.||||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 667999999999999999999998877655433332222 233444332 267799999999999999888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-------cC-CCEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-------IG-APVY 155 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~ 155 (198)
|+|++++...+.. +.+...... ++|+++++||+|+... ..++....... ++ ..++
T Consensus 165 VVda~dgv~~qT~--e~i~~~~~~--~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 165 VVAADDGVMPQTI--EAISHAKAA--NVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred EEECCCCCCHhHH--HHHHHHHHc--CCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence 9999875433332 222233333 7999999999999642 11222222222 22 1368
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 029144 156 IECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~ 175 (198)
+++||++|.|++++|+++..
T Consensus 228 v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEECCCCCChHHHHHhhhh
Confidence 99999999999999999875
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=6.7e-22 Score=161.55 Aligned_cols=160 Identities=21% Similarity=0.216 Sum_probs=114.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-------CCCCCCCcc------cccee---EEEEE---CCeEEEEEEEeCCCccC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS---ANVVV---DGSTVNLGLWDTAGQED 66 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~-------~~~~~~~t~------~~~~~---~~~~~---~~~~~~l~i~D~~G~~~ 66 (198)
.=+|+++|+.++|||||+++++... +...+..+. +..+. ..+.+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998642 112222221 11121 11222 45668899999999999
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
|...+..+++.+|++++|+|++++.+.+.. ..|...+. .++|+++|+||+|+.... ......++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el 146 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI 146 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence 999899999999999999999998777665 44443332 278999999999996421 11222344
Q ss_pred HHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 147 RKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 147 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
....+.. .++++||++|.|++++|++|.+.+..+.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4444442 4899999999999999999999886553
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2.9e-22 Score=138.70 Aligned_cols=142 Identities=20% Similarity=0.148 Sum_probs=98.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc----ccccCCCcEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFLL 83 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~~~~i~ 83 (198)
+|+++|.+|+|||||++++.+..... ..+ ..+.+... .+||+||.......+ ...+.++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999977543111 111 11222222 279999973222111 123678999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-CEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA-PVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (198)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+ ...+...+++...+. .+++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999998876532 222222 23689999999999954 234556677767764 3799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
++|++++|+++.+.+...
T Consensus 132 g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ccCHHHHHHHHHHhchhh
Confidence 999999999998877443
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=3e-22 Score=143.14 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=101.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC----CCCCCC----CCccccceeEEEEEC------------CeEEEEEEEeCCCccC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY----VPTVFDNFSANVVVD------------GSTVNLGLWDTAGQED 66 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~----~~~~~~----~~t~~~~~~~~~~~~------------~~~~~l~i~D~~G~~~ 66 (198)
++|+++|++++|||||++++... .+...+ ..++.........+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111111 111211111112222 2357888999999976
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
+..........+|++++|+|++++...... ..+. ..... +.|+++|+||+|+..... .....++..+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~ 148 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEE--------RERKIEKMKKK 148 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 544333445678999999999886544433 2221 22222 679999999999964321 00112222221
Q ss_pred -HHH------cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 147 -RKL------IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 147 -~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
... .+. +++++||++|.|++++++++.+.+..+
T Consensus 149 l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 LQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhccccc
Confidence 111 233 699999999999999999999887543
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=1.3e-21 Score=148.36 Aligned_cols=161 Identities=22% Similarity=0.232 Sum_probs=111.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc--------cccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLRPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~~~ 74 (198)
+.-.|+++|.+|+|||||++++++..+. .....|+..........++ ..+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4567999999999999999999987653 2233344443333333333 678899999975432 122335
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
+.++|++++|+|++++.+. ....+...+... +.|+++|+||+|+..... ........+....+...
T Consensus 82 ~~~~D~il~vvd~~~~~~~--~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP--GDEFILEKLKKV--KTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh--hHHHHHHHHhhc--CCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence 6789999999999883322 213444455433 789999999999974321 23344455555556667
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++++||+++.|++++++++.+.+....
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999885543
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.7e-22 Score=157.72 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=109.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--------cccccccccC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR 76 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~ 76 (198)
.+|+++|.+|+|||||++++.+.. +...+.+++.+.......+++ ..+.+|||||+.. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999775 345555566666666667777 6678999999876 1222345678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
++|++++|+|+.++.+..+. .+...+... +.|+++|+||+|+.+.. ....++ ...+...++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence 89999999999886554332 333444444 79999999999974321 122222 345654589
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
++||++|.|++++++.+.+..
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 999999999999999998844
No 170
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-22 Score=137.71 Aligned_cols=161 Identities=27% Similarity=0.421 Sum_probs=139.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCe-EEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.++++++|..|.||||++++++.+.+...+.+|.+..........+. .+.+..|||+|++.+..+...++-++.+.+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999998777666655443 59999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
||+...-++... ..|...+.+.+.++|+++++||.|..... .......+-+..++ .|++.||+++.
T Consensus 90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~ 155 (216)
T KOG0096|consen 90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNY 155 (216)
T ss_pred eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeeccccc
Confidence 999999999999 89999999999999999999999997643 12233344555666 79999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 029144 165 NVKAVFDAAIKVVLQP 180 (198)
Q Consensus 165 ~i~~~~~~i~~~~~~~ 180 (198)
|.+..|-++++.+.-.
T Consensus 156 NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 156 NFERPFLWLARKLTGD 171 (216)
T ss_pred ccccchHHHhhhhcCC
Confidence 9999999999988543
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=7.1e-22 Score=157.37 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=112.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--------cccccccccCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG 77 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~~ 77 (198)
+|+++|.+|+|||||++++.+.. +..++.+++.+.......+++. .+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999865 3445556666666666677774 477999999632 23344556788
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+|++++|+|+.++.+..+. .+...++.. +.|+++|+||+|+.+... . ..+ ....+..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~-----------~---~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA-----------V---AAE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc-----------c---HHH-HHhcCCCCeEE
Confidence 9999999999876554432 445555554 799999999999965321 1 112 34556667899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+||.+|.|+.++++.+.+.+...
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCcc
Confidence 99999999999999999887553
No 172
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.1e-21 Score=162.06 Aligned_cols=161 Identities=15% Similarity=0.204 Sum_probs=110.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc---cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
.+...|+++|+.++|||||++++....+.....+... ..+......++....+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3567999999999999999999998766543332221 1122222333445788899999999999999889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH---HHHHcC-CCEEE
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE---LRKLIG-APVYI 156 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 156 (198)
+++|+|++++...+.. ..| ..+... ++|+++++||+|+..... .....++.. +...++ ..+++
T Consensus 322 aILVVDA~dGv~~QT~-E~I-~~~k~~--~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAI-NYIQAA--NVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred EEEEEECcCCCChhhH-HHH-HHHHhc--CceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence 9999999885433332 222 233333 799999999999965321 000111111 122222 24799
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
++||++|.|++++++.+....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999998764
No 173
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=142.31 Aligned_cols=165 Identities=17% Similarity=0.173 Sum_probs=123.1
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc--------ccc
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLR 71 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~ 71 (198)
...+.--|+++|.||+|||||+|++++.++ ..+-..|+...+...++.++ .++.|+||||...-. ...
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 344566899999999999999999998854 44555677777777777765 566799999953322 223
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
...+..+|+++||+|++.+....+ ...++.+... +.|+++++||+|...+.. .-......+.....
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~ 145 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLP 145 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCC
Confidence 345778999999999988655433 3555566653 789999999999976542 12334444555567
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+...+++||++|.|++.+.+.+...+.....
T Consensus 146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 146 FKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred cceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 7689999999999999999999999876554
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.2e-21 Score=139.05 Aligned_cols=162 Identities=19% Similarity=0.129 Sum_probs=103.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----------Ccccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP 72 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~ 72 (198)
++...+|+++|.+|+|||||++++++..+...+.++.+.........- ...+.+||+||.. .+.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 446789999999999999999999987644444444432221111111 2568899999953 2222223
Q ss_pred cccC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 73 LSYR---GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
.+++ .++++++|+|.+++.+.... .+...+... +.|+++++||+|+.+... .....+.+......
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence 3333 34678889998876544332 233334333 789999999999965321 00122233344433
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
... +++++||+++.|++++++.|.+.+..
T Consensus 167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDD-EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCC-ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 334 68999999999999999999887643
No 175
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3.5e-21 Score=150.90 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=110.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcc----cccccc---cCCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN----RLRPLS---YRGA 78 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~----~~~~~~---~~~~ 78 (198)
.|+++|.++||||||++++.+... ...|..|+.......+.++ + ..+.+||+||..... .+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 899999999999999999997642 2344455543333334444 3 457799999974322 222233 4568
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144 79 DVFLLAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA 152 (198)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
+++++|+|+++. +.++.. ..|...+..+. .+.|++||+||+|+... .+....+....+.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~ 302 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP 302 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC
Confidence 999999999864 556655 66777777654 37899999999998432 2334555555564
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+++++||+++.|++++++++.+.+...
T Consensus 303 -~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 303 -KVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 789999999999999999999887554
No 176
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=2.2e-21 Score=138.16 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=110.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC-------------CCcc------ccceeEEEEECCeEEEEEEEeCCCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------VPTV------FDNFSANVVVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~-------------~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (198)
+..+|+++|+.++|||||+.+++...-.... .+.. ................+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999854321110 0000 00011222201334677899999999
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE- 144 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~- 144 (198)
.|.......+..+|++|+|+|+.++..... .+.+..+... ++|+++|+||+|+...+. ....++.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~---------~~~~~~~~~ 148 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL---------EEIIEEIKE 148 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH---------HHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH---------HHHHHHHHH
Confidence 998888788999999999999987755443 3555666666 899999999999974321 01222222
Q ss_pred HHHHHcC-----CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 145 ELRKLIG-----APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 145 ~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
.+.+..+ ..+++.+||.+|.|++++++.+.+.+.
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3444442 247999999999999999999998764
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=8.2e-22 Score=139.34 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=98.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEE-EEECCeEEEEEEEeCCCccC----------ccc
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED----------YNR 69 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~----------~~~ 69 (198)
|++.+..+|+++|.+|+|||||++++.+..+...+.++.+...... ...++ .+.+||+||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3556789999999999999999999998764333334433222211 22232 477999999532 222
Q ss_pred ccccccC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 70 LRPLSYR---GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 70 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
....+++ .++++++|+|++++.+.... .+...+... +.|+++++||+|+.+... .....+++++.
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 2223443 35799999999886555443 344455544 799999999999965321 01233444555
Q ss_pred HHHcCC-CEEEEeccCCCCCHH
Q 029144 147 RKLIGA-PVYIECSSKTQQNVK 167 (198)
Q Consensus 147 ~~~~~~-~~~~~~Sa~~~~~i~ 167 (198)
....+. ..+|++||++|+|++
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HhhccCCCceEEEECCCCCCCC
Confidence 555432 269999999999973
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.9e-21 Score=151.92 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=109.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----c---cccccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~ 77 (198)
..+|+|||.+|+|||||++++..... ..+|..|+.......+.+.+ ..+++||+||.....+ + ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 35899999999999999999987543 23455566555555555665 5677999999632111 1 1123567
Q ss_pred CcEEEEEEECCCh----hhHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCcccccccccCCCCCccccHH
Q 029144 78 ADVFLLAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTA 141 (198)
Q Consensus 78 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 141 (198)
++++++|+|+++. +.+.+. ..+...+..+. .+.|++||+||+|+.+... ..+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l~e 304 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------LAE 304 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------HHH
Confidence 9999999999753 233333 33333343321 3689999999999965431 122
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 142 QGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
.........++ ++|++||+++.|+++++.+|.+.+...+
T Consensus 305 ~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 305 FVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 23333344566 7999999999999999999999885543
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=5e-21 Score=159.38 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=109.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.++..|+++|+.++|||||+++|....+.....+... ......+.+++ ..++||||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999988766544333221 11123344555 56789999999999999988899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH---HHHHHcC-CCEEEEe
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE---ELRKLIG-APVYIEC 158 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~ 158 (198)
+|+|++++..-+.. ..| ...... ++|+++++||+|+..... ..+. .++. .+...++ ..+++++
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~~--~vPiIVviNKiDl~~a~~--------e~V~-~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKAA--GVPIIVAINKIDKPGANP--------DRVK-QELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHhc--CCcEEEEEECccccccCH--------HHHH-HHHHHhcccHHHhCCCceEEEE
Confidence 99999885433322 222 233333 799999999999964210 0011 1111 1122333 2379999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 029144 159 SSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~ 176 (198)
||++|.|++++|++|...
T Consensus 433 SAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 433 SAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eCCCCCCchHHHHhhhhh
Confidence 999999999999998764
No 180
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=2.5e-21 Score=139.40 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=79.2
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
..+.|||+||++.|...+...+.++|++++|+|++++...... ...+..+... ...|+++|+||+|+.+...
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~------ 154 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQ------ 154 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHH------
Confidence 6788999999999888877888899999999999874211111 1122223222 2357999999999965321
Q ss_pred CCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 134 GAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.....++.+++...+ +. +++++||++|.|++++|+.+.+.+..+
T Consensus 155 --~~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 --ALENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred --HHHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 001123334444332 33 689999999999999999999877654
No 181
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=7e-21 Score=149.97 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=106.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCc--ccccc------cccCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG 77 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~~~ 77 (198)
.+|+++|.+|+|||||+|++.+.... .+...++.+.....+.+.+. ..+.+|||||..+. ...+. ..+++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999976532 23334444444445555442 14569999997432 11222 23578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+... .. .. ....+.+.++
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~--~~--~~~~~~~~~v 340 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PR--ID--RDEENKPIRV 340 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HH--HH--HHhcCCCceE
Confidence 9999999999998877766 44444444332 3799999999999964311 10 11 1123443358
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+||++|.|++++++++.+.+..
T Consensus 341 ~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 341 WLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998743
No 182
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.6e-21 Score=161.88 Aligned_cols=158 Identities=23% Similarity=0.250 Sum_probs=114.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC----------ccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR 71 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~ 71 (198)
+...+|+++|.+|+|||||++++++... ..++.+|+.+.+...+.+++.. +.+|||||..+ |....
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 3458999999999999999999998763 4566777777776667777755 45999999642 11111
Q ss_pred -ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-HHH-
Q 029144 72 -PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LRK- 148 (198)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~- 148 (198)
...++.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.+.. ..+.... +..
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~------------~~~~~~~~~~~~ 589 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEF------------RRQRLERLWKTE 589 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChh------------HHHHHHHHHHHh
Confidence 2346789999999999998888776 344444443 79999999999996532 1111111 111
Q ss_pred --HcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 149 --LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.....+++.+||++|.|++++++.+.+.+..
T Consensus 590 l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 590 FDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2233467889999999999999999998765
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.1e-20 Score=150.80 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=110.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 71 (198)
..++|+++|.+|+|||||++++++.. ...+..+++.+.....+..++. .+.+|||||........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46899999999999999999999754 3344555665555555556664 45699999965432221
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
...++.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.+... .....++........+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--------~~~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT--------MEEFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH--------HHHHHHHHHHhccccc
Confidence 2356789999999999998777655 444455444 799999999999974321 0011111111112223
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
..+++++||+++.|++++++.+.+.+.
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999887653
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=8.8e-21 Score=154.88 Aligned_cols=161 Identities=20% Similarity=0.172 Sum_probs=111.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC---CCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~---~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+.|+++|+.++|||||+++|.+. .+++++..+.. +.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 23333333222 22222344455 67889999999999888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC---CCEEEEe
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG---APVYIEC 158 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (198)
+|+|++++...+.. +.+..+... ++| +++|+||+|+.+... .....+++..+....+ ..+++++
T Consensus 79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~v 146 (581)
T TIGR00475 79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKT 146 (581)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 99999884322221 222334333 677 999999999975431 0012344555555543 2379999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCC
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
||++|.|+++++..+.+.+....
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHhCC
Confidence 99999999999999988765543
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.5e-20 Score=153.75 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=114.0
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhC--CCCC-----CCCCc------cccce---eEEEEE---CCeEEEEEEEeCC
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYVPT------VFDNF---SANVVV---DGSTVNLGLWDTA 62 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~i~D~~ 62 (198)
..++.-+|+++|+.++|||||+.+++.. .+.. .+..+ .+..+ ...+.+ ++..+.+++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 3445569999999999999999999863 2211 11000 01111 111222 4556889999999
Q ss_pred CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ 142 (198)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (198)
|+.+|...+...++.+|++++|+|++++...+.. ..|.... . .++|+++|+||+|+.... ....
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~-~--~~lpiIvViNKiDl~~a~------------~~~v 146 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLAL-E--NDLEIIPVLNKIDLPAAD------------PERV 146 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH-H--CCCCEEEEEECCCCCccc------------HHHH
Confidence 9999998888999999999999999987666554 3443332 2 278999999999996432 1112
Q ss_pred HHHHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 143 GEELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 143 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
..++....+.. .++++||++|.|+++++++|.+.+..+.
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 23333334442 4899999999999999999999886554
No 186
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=8.5e-21 Score=154.27 Aligned_cols=169 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc----ccceeEE-E------------EECCeEEEEEEEeCCCccCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNFSAN-V------------VVDGSTVNLGLWDTAGQEDY 67 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~----~~~~~~~-~------------~~~~~~~~l~i~D~~G~~~~ 67 (198)
+.--|+++|++++|||||++++.+..+.....++. +..+... . .++.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34569999999999999999999887654322211 1111110 0 00011123789999999999
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC-------CCCcccc-
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH-------PGAVPIT- 139 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-------~~~~~~~- 139 (198)
..++...++.+|++++|+|++++...+.. +.+..+... +.|+++++||+|+.+........ .....+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~--e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHH--HHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 99998899999999999999874322222 122233333 78999999999996421000000 0000000
Q ss_pred ------HHHHHHHH-------------HHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 140 ------TAQGEELR-------------KLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 140 ------~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
.....++. .-.+..+++++||++|+|+++++.++....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00000111 112234799999999999999999887543
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.6e-20 Score=157.12 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=107.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc--------cccccccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSY 75 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~ 75 (198)
..+|+++|.+|+|||||++++++... ......++.+.......+++ ..+.+|||||.+.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999997643 34444444454454555566 45679999997632 22233457
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
+.+|++++|+|+++.....+ ..|...++.. +.|+++|+||+|+.... .....+ ...+....
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~--------------~~~~~~-~~lg~~~~ 413 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE--------------YDAAEF-WKLGLGEP 413 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch--------------hhHHHH-HHcCCCCe
Confidence 88999999999987533332 3566666654 89999999999985421 111222 12333346
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+++||++|.|++++|+++++.+..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccc
Confidence 789999999999999999998855
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.4e-20 Score=145.38 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=113.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----c---cccccCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~~ 79 (198)
.|.++|.||+|||||++++..... ...+..|+.......+.+.+. ..+.++|+||...-.+ + ....+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999987543 344556666555555555432 2466999999743211 1 112467899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-
Q 029144 80 VFLLAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA- 152 (198)
Q Consensus 80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (198)
++++|+|++ +.+.++.. ..|...+..+. .+.|+++|+||+|+..... ..+....+....+.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~ 307 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE 307 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence 999999988 44555555 66777776654 3689999999999965331 22334444444443
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.+++.+||+++.|++++++.|.+.+...
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 1589999999999999999999988654
No 189
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=124.64 Aligned_cols=167 Identities=26% Similarity=0.545 Sum_probs=135.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+||.++|.+..|||||+-.+.++.+.+.+..+.+..+ .+.+.+++..+.+.+||.+|++++..+.+..-..+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 68999999999999999999999998888777776554 67788899999999999999999999999888999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
||.+.+.++..+ .+|.++.+.... .+| ++|++|.|+.-+.. .+-......+++.+++-.++ +.|.+|+...
T Consensus 100 FDLt~r~TLnSi-~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s 171 (205)
T KOG1673|consen 100 FDLTRRSTLNSI-KEWYRQARGLNKTAIP-ILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS 171 (205)
T ss_pred EecCchHHHHHH-HHHHHHHhccCCccce-EEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence 999999999999 888888777653 445 56799999753211 00001223456677888888 5778999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029144 164 QNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (198)
-|+..+|.-+..+++..
T Consensus 172 INv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999888877654
No 190
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1e-20 Score=145.78 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=119.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------ccccccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY 75 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~~ 75 (198)
..|+++|.||||||||+|++.+. .+..++.+++.+.......+.+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999976 557888899999998888888855 6699999976432 2233457
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
..||++|||+|...+-+-.+. .....++.. +.|+++|+||+|-... +....-...+|+..+
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~~---------------e~~~~efyslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLKA---------------EELAYEFYSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCchh---------------hhhHHHHHhcCCCCc
Confidence 789999999999876555543 555566644 7999999999999532 223333445666678
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+.+||..|.|+.++++.+++.+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 99999999999999999999984
No 191
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-21 Score=131.90 Aligned_cols=164 Identities=21% Similarity=0.300 Sum_probs=120.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCC---C----CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccccc
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT---F----PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL 73 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 73 (198)
|.....+.|+++|..++|||||+.+..... + +....+|.+-... .+.+.+ ..+.+||.+||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 456678899999999999999997665321 1 1223344443332 233443 56779999999999999999
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH---HH
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR---KL 149 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 149 (198)
++..++++|+++|++|++-++.....+...+..-. .+.|+++.+||.|+.+.. ...++.... ..
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~ 156 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAEL 156 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhh
Confidence 99999999999999999888877444444444333 699999999999997642 233333222 22
Q ss_pred ---cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 150 ---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 150 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
... ++.++||.+|+||++-..|++..+.+.
T Consensus 157 ~~~rd~-~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 157 IPRRDN-PFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCCccC-ccccchhhhcccHHHHHHHHHHHHhhc
Confidence 233 588899999999999999999988766
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=1.1e-19 Score=133.20 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc-------ccccccCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~~ 79 (198)
+|+++|.+|+|||||++++.+... ...+..++.+.....+.+++ ..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999997652 34455555545555666666 5677999999754331 1224678999
Q ss_pred EEEEEEECCChhh-HHHHHHHHHHH-----------------------------------------Hhh-----------
Q 029144 80 VFLLAFSLISKAS-YENVAKKWIPE-----------------------------------------LRH----------- 106 (198)
Q Consensus 80 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~----------- 106 (198)
++++|+|+++++. ...+ ...+.. +..
T Consensus 80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 3222 111110 100
Q ss_pred --------------hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHH
Q 029144 107 --------------YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172 (198)
Q Consensus 107 --------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (198)
...-.|+++|+||+|+.+ .+++..++.. +.++++||+++.|++++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~ 220 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER 220 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence 011359999999999943 3444444443 25889999999999999999
Q ss_pred HHHHHc
Q 029144 173 AIKVVL 178 (198)
Q Consensus 173 i~~~~~ 178 (198)
+.+.+-
T Consensus 221 i~~~L~ 226 (233)
T cd01896 221 IWDKLG 226 (233)
T ss_pred HHHHhC
Confidence 998763
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=8.9e-21 Score=150.60 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=102.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------------------------------CCCccccceeEEEE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVV 48 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~ 48 (198)
|++...++|+++|++++|||||+++|+.. .+... ...++.+.... .
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~ 78 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--K 78 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--E
Confidence 78899999999999999999999999843 21110 01111111112 2
Q ss_pred ECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (198)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 128 (198)
+....+.+.+|||||++.|.......+..+|++++|+|+++..+......++...+... ...|+++++||+|+.+...
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~- 156 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE- 156 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH-
Confidence 23334678899999998887655566789999999999987322212112233333332 2346999999999965210
Q ss_pred ccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHHH
Q 029144 129 LADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 170 (198)
.......+++..+....++ .+++++||++|.|++++.
T Consensus 157 -----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 157 -----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred -----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0001223455555555553 369999999999998743
No 194
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=122.84 Aligned_cols=159 Identities=20% Similarity=0.218 Sum_probs=120.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+++||+++|..++|||||+..+..... ....||.+..... +.++ ..+.+++||.+|+...+-.|..++.+.|++||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~-v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK-VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE-Eeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 5789999999999999999998887653 3345555544333 3333 35889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHH-HH----HHHHcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EE----LRKLIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~ 157 (198)
|+|.+|...|+++..++.+.+.... ...|+.|.+||.|+.-.- ..++. .. ..+...+ .+-+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa------------~~eeia~klnl~~lrdRsw-hIq~ 158 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA------------KVEEIALKLNLAGLRDRSW-HIQE 158 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc------------chHHHHHhcchhhhhhceE-Eeee
Confidence 9999999999988677766665543 589999999999996431 22221 11 1112223 4667
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 029144 158 CSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+||.+++|+....+++.....
T Consensus 159 csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 159 CSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred CccccccCccCcchhhhcCCC
Confidence 999999999999999877654
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=6e-20 Score=125.09 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=118.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCC--------CCCC---cc-ccceeEEEEECCeEEEEEEEeCCCccCcccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--------DYVP---TV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~--------~~~~---t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (198)
.....||++.|+.++||||+++++....... .+.. |+ ...+......++ ..+.+++||||++|..+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc--ceEEEecCCCcHHHHHH
Confidence 3467899999999999999999998765311 1111 11 112222122222 45669999999999999
Q ss_pred cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
|...++++.++|+++|.+.+..+ .. ...+..+....+ +|++|++||.|+.+. .+.++.+++....
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~~ 149 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKLE 149 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHhc
Confidence 99999999999999999999888 33 566666666633 999999999999875 5666666655554
Q ss_pred --CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 151 --GAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 151 --~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
.. +.++.+|.++++..+.++.+...
T Consensus 150 ~~~~-~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 LLSV-PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCC-ceeeeecccchhHHHHHHHHHhh
Confidence 44 79999999999999999998876
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=1.6e-20 Score=135.06 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=87.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCC-cEEEEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFLLAFS 86 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d 86 (198)
+|+++|++|+|||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988766654443221111111113346788999999999988888888888 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhh---hCCCCCEEEEeecCCcccc
Q 029144 87 LISK-ASYENVAKKWIPELRH---YAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~ 125 (198)
+.+. .++......+...+.. ..++.|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9987 6777764444444432 2258999999999998754
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=4e-20 Score=142.50 Aligned_cols=160 Identities=23% Similarity=0.256 Sum_probs=125.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC----------ccccc-
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~- 71 (198)
..+||+++|.|++|||||+|++++. .+..+..+|+.+.+...+.++++.+. ++||+|..+ |....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999976 45677788999999999999997766 999999432 22221
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHH----HHHHHH
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTA----QGEELR 147 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (198)
...+..++++++|+|++.+-+-++. .....+... +.+++||+||+|+.+.+. ...+ ++....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l 320 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL 320 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence 2346779999999999998877765 666677766 899999999999977532 2333 333444
Q ss_pred HHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 148 KLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
...++.+.+.+||+++.++.++|+.+.+.....
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 445666899999999999999999998876443
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=3.6e-20 Score=127.76 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=102.2
Q ss_pred EECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc-------cccCCCcEE
Q 029144 11 TVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (198)
Q Consensus 11 vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~~~~~~~ 81 (198)
++|++|+|||||++++.+.... ....+++............ ...+.+||+||...+..... ..++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876443 1222223222233332221 35678999999877654433 367889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH--HHHHHHHcCCCEEEEec
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ--GEELRKLIGAPVYIECS 159 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S 159 (198)
++|+|+++....... . +....... +.|+++|+||+|+..... ..... ...........+++++|
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~~--~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRER--GKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHhc--CCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence 999999998877766 2 33344333 899999999999976432 11111 11122222334799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 029144 160 SKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~ 176 (198)
|.++.|++++++++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999999875
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=3.6e-20 Score=151.45 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc------ccccc--CCCcEEEE
Q 029144 13 GDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFLL 83 (198)
Q Consensus 13 G~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~i~ 83 (198)
|.+|+|||||+|++.+... ..++..++.+.....+.+++. .+.+||+||+.++... ...++ +++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998764 344444554444555666664 4679999999877654 22232 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|+|+++.+.. ..+..++... +.|+++|+||+|+.+... +. .+.+.+.+..+. +++++||++|
T Consensus 79 VvDat~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhh----HHHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence 9999875422 2222333333 799999999999975432 22 345677778887 7999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKVV 177 (198)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (198)
+|++++++++.+.+
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998864
No 200
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.3e-21 Score=124.73 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=122.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
++..+|+++|..|+||||++.++.-++.+.+ .|+.+..... + ..++..+++||.+|+...+-.|+-++.+.|++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~-v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET-V--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc-c--ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 3789999999999999999998887775443 5666544332 2 2355788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHH-----HHHHHcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-----ELRKLIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 157 (198)
|+|.+|.+...-...++..+++... ....+++++||.|..... ...++. .-.++.-+ .+|+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~-~Iv~ 158 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIW-QIVK 158 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhhee-EEEe
Confidence 9999998877666567777776654 567788999999997532 222221 11222234 7999
Q ss_pred eccCCCCCHHHHHHHHHHHHcC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+||.+|+|+++.++|+++.+..
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccccCCcHHHHHHHHHHhc
Confidence 9999999999999999987754
No 201
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-22 Score=136.38 Aligned_cols=167 Identities=27% Similarity=0.451 Sum_probs=140.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECC-eEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
-++++|+|..|+|||+++.+++...+...|..|++..+. ..+.+++ ..+++++||..||++|..+..-+++.+.+..+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 468999999999999999999999999999999976663 3344444 44788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--C---CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--P---GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
|||+++..+|+.. ..|.+.+.... | -.|+++.+||||....-. ........++..+.|+...+++
T Consensus 105 Vfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwtet 174 (229)
T KOG4423|consen 105 VFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTET 174 (229)
T ss_pred EEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceeee
Confidence 9999999999998 88888877655 2 467789999999976531 1123566778888999889999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
|++.+.+++|.-..+++.+.....
T Consensus 175 s~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 175 SAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred ccccccChhHHHHHHHHHHHhhcc
Confidence 999999999999999998876553
No 202
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3.6e-19 Score=148.94 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=110.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc----------cc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------LS 74 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~----------~~ 74 (198)
.++|+++|.+|+|||||+|++.+... ..++..++.+.....+..++ ..+.+||+||+.++..... .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 57899999999999999999987533 23444444443333344444 5677999999977653211 12
Q ss_pred --cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144 75 --YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA 152 (198)
Q Consensus 75 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
...+|++++|+|+++.+.. ..+..++.+. +.|+++++||+|+.+... + ..+.+.+.+..+.
T Consensus 81 l~~~~aD~vI~VvDat~ler~----l~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN----LYLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCCcchhh----HHHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC
Confidence 2478999999999885432 2344455554 899999999999975432 2 3455677778888
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+++++||.+++|++++.+.+.+..
T Consensus 144 -pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 144 -PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -CEEEEEeecCCCHHHHHHHHHHhh
Confidence 799999999999999999998765
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=8e-20 Score=121.80 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=98.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----CcccccccccCCCcEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~~~~~~i~ 83 (198)
||+++|+.|+|||||+++|.+... .+..|.. +.+ .=.++||||.- .|.+.......+||++++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998764 2222221 111 11379999952 222222333458999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
+.|++++.+.-.- .+...+ +.|+|-|+||+|+..+. ...+.++++...-|+...|++|+.+|
T Consensus 70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 9999987654332 222221 68999999999998433 46678888888889988999999999
Q ss_pred CCHHHHHHHHH
Q 029144 164 QNVKAVFDAAI 174 (198)
Q Consensus 164 ~~i~~~~~~i~ 174 (198)
+|++++.++|-
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999998874
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=7.3e-20 Score=145.38 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=100.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhh--CCCCCC------------------------C------CCccccceeEEEEEC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------Y------VPTVFDNFSANVVVD 50 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~--~~~~~~------------------------~------~~t~~~~~~~~~~~~ 50 (198)
+...++|+++|+.++|||||+.+|+. +.+... . ...+.+... ..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 34678999999999999999999985 222210 0 000011111 1223
Q ss_pred CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL 129 (198)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 129 (198)
...+.+.+||+||++.|.......+.++|++++|+|++++++.... ..++.... ......|+++|+||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~-- 158 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDE-- 158 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccH--
Confidence 3347788999999998876666677899999999999987543211 01111222 2223457999999999964211
Q ss_pred cCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144 130 ADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA 168 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (198)
.......+++..++...+. .+++++||++|.|+.+
T Consensus 159 ----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 159 ----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 0011233456666666653 3699999999999986
No 205
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.5e-19 Score=138.48 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=116.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 74 (198)
.-++++++|.||+|||||+|.+.+. .++.+..+|+.+.....+.+++ +.+.+.||+|...-... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4589999999999999999999975 6688899999999999999999 66779999997543322 1245
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
+.+||.+++|+|++.+.+-.+. ..+. ....+.|+++|.||.|+..... ........+. +
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~~~~~~~-~ 352 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESEKLANGD-A 352 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchhhccCCC-c
Confidence 6789999999999987444443 2222 2234799999999999976531 1111111222 5
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++.+|+++++|++.+.+.|.+.+...
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhhc
Confidence 89999999999999999999988766
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2.7e-19 Score=146.10 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=109.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh--CCCCCCCCCc---------c---ccce-e--EEEEECCeEEEEEEEeCCCccCcccc
Q 029144 8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYVPT---------V---FDNF-S--ANVVVDGSTVNLGLWDTAGQEDYNRL 70 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~--~~~~~~~~~t---------~---~~~~-~--~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (198)
+|+++|+.++|||||+.+++. +.+....... . +..+ . ..+.+++ +.+++|||||+.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 799999999999999999986 3332221100 0 1111 1 1233344 77889999999999988
Q ss_pred cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--
Q 029144 71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-- 148 (198)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (198)
+...++.+|++++|+|+.++..-+ . ..|+..+... ++|+++|+||+|+...+. ....++...+..
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~q-T-~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQ-T-RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAEL 147 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHH-H-HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhh
Confidence 888999999999999998754322 2 4555555555 799999999999965321 012233333332
Q ss_pred -----HcCCCEEEEeccCCCC----------CHHHHHHHHHHHHcCCC
Q 029144 149 -----LIGAPVYIECSSKTQQ----------NVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 149 -----~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 181 (198)
...+ +++.+||++|. |+..+|+.+++.+..+.
T Consensus 148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 2234 68999999995 79999999999887654
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=6.8e-19 Score=143.68 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=112.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCCCCCC------------Cccccce-eEEEEECCeEEEEEEEeCCCccCccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (198)
+.-+|+++|+.++|||||+++++. +.+..... .+.+..+ .....+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456999999999999999999996 44433211 1111111 22223334457888999999999999
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
.+..+++.+|++++|+|+.+....+.. .++..+... ++|.++++||+|+..... ....++...+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence 999999999999999999876444332 333343334 789999999999975421 0122233333221
Q ss_pred -------cCCCEEEEeccCCCC----------CHHHHHHHHHHHHcCCC
Q 029144 150 -------IGAPVYIECSSKTQQ----------NVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 150 -------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 181 (198)
..+ +++.+||.+|. ++..+|+.|++.+..+.
T Consensus 151 l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 151 LDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 234 58999999998 68999999999887654
No 208
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=2.1e-19 Score=129.88 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=92.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC--CCCC------------------------C------CCccccceeEEEEECCeEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------Y------VPTVFDNFSANVVVDGSTVN 55 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~~~~ 55 (198)
+|+++|++|+|||||+++++... +... . ..++.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 58999999999999999997532 1100 0 1111111112222333 45
Q ss_pred EEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA 135 (198)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 135 (198)
+.+|||||+..|.......++.+|++++|+|++++..-... .....+... ...++++|+||+|+.+... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~ 149 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------EV 149 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------HH
Confidence 67999999988876666678899999999999876433222 222222222 1245788999999964211 00
Q ss_pred ccccHHHHHHHHHHcCC--CEEEEeccCCCCCHHHH
Q 029144 136 VPITTAQGEELRKLIGA--PVYIECSSKTQQNVKAV 169 (198)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 169 (198)
......+.+.+....+. .+++++||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00122344555556654 24899999999998753
No 209
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=2.2e-19 Score=131.36 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=112.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc--ccceeEEEEECCeEEEEEEEeCCCccCc------------cc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVDGSTVNLGLWDTAGQEDY------------NR 69 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~l~i~D~~G~~~~------------~~ 69 (198)
.+.++|+++|.||+|||||.|.+++..+........ .......++ ....++.|+||||.-.- ..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~t--s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIIT--SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEe--cCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 478999999999999999999999987755444333 333344444 34477889999993211 11
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC------CCCCccccHHHH
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD------HPGAVPITTAQG 143 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~ 143 (198)
.....+.+||.+++|+|+++....-. ...+..+..+. ++|-++|+||.|.......... .........+..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 22345667999999999997433222 34455555443 7899999999999876442210 000000011222
Q ss_pred HHHHHHc---------CC---CEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 144 EELRKLI---------GA---PVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 144 ~~~~~~~---------~~---~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
+.+.... |+ ..+|.+||++|+|++++-++|+..+....-+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 2222211 22 2378899999999999999999988665443
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.1e-18 Score=124.35 Aligned_cols=150 Identities=20% Similarity=0.197 Sum_probs=96.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-------C----CCCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-------P----TDYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-------~----~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (198)
.++|+++|+.++|||||+++++.... . -+..+.. +... .....+......+.+.||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47999999999999999999985310 0 0000000 0011 111222233456779999999888777
Q ss_pred cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
....+..+|++++|+|+..+..-.. ..++..+... +.| +++++||+|+..... ......+++..+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l~~ 150 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELLSK 150 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHHH
Confidence 7777889999999999987543332 3444455554 676 778999999964221 011223345555555
Q ss_pred cCC----CEEEEeccCCCCCH
Q 029144 150 IGA----PVYIECSSKTQQNV 166 (198)
Q Consensus 150 ~~~----~~~~~~Sa~~~~~i 166 (198)
.++ .+++.+||++|.|+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 443 47999999999874
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=9.4e-19 Score=128.46 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=108.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC--C------C-----CCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcccc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF--P------T-----DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~--~------~-----~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (198)
+|+++|+.|+|||||+++++...- . . ++.+.. +..+ .....+......+.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986311 0 0 000000 0001 111222223467889999999999888
Q ss_pred cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc---------cC----------
Q 029144 71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL---------AD---------- 131 (198)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---------~~---------- 131 (198)
+...++.+|++++|+|++++..... ..+...+... +.|+++++||+|+....... ..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8889999999999999998755432 4555555555 89999999999997532100 00
Q ss_pred ----------------------------CCCCccccHHHHHHHH----HHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 132 ----------------------------HPGAVPITTAQGEELR----KLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 132 ----------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.-+...++.+++.... ......|++-.||.++.|+..+++.+.+.+..
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 0001123334433222 22334467778999999999999999987743
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=7.9e-19 Score=122.38 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=97.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCCccCc----------cccccccc-
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY----------NRLRPLSY- 75 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~~~~- 75 (198)
.|+++|.+|+|||||++.+.++.......++...... .....+. .+.+||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999965554444444432221 1222222 6779999995432 22222233
Q ss_pred --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCC
Q 029144 76 --RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGA 152 (198)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (198)
.+++++++++|..+..+.... .....+... +.|+++++||+|+..... ............. ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID 145 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence 246788999998866432221 233334444 689999999999964321 0011122222222 2344
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
.+++++||+++.+++++++.|.+.+
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999998753
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=1e-18 Score=142.58 Aligned_cols=165 Identities=17% Similarity=0.142 Sum_probs=101.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCC----ccccceeEEEEE---CCeE-----E-----EEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP----TVFDNFSANVVV---DGST-----V-----NLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~----t~~~~~~~~~~~---~~~~-----~-----~l~i~D~~G~~~ 66 (198)
.|+..|+++|+.++|||||++++.+..+...... +.+..+...... .+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4566799999999999999999987654333222 222111110000 0111 1 267999999999
Q ss_pred cccccccccCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC------CCCCcc
Q 029144 67 YNRLRPLSYRGADVFLLAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD------HPGAVP 137 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~------~~~~~~ 137 (198)
|..++...++.+|++++|+|+++ +.+++.+ ..+... +.|+++++||+|+.+.-..... ......
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888889999999999987 4444433 233333 7999999999998531100000 000000
Q ss_pred ccHH-------HHHHHHHH--------------cCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 138 ITTA-------QGEELRKL--------------IGAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 138 ~~~~-------~~~~~~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
...+ +....... .+..+++++||.+|.|+++++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000 01111111 12346899999999999999988865
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=4.9e-19 Score=128.46 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=79.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCC-----------CCCcc------ccce---eEEEEE---CCeEEEEEEEeCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-----------YVPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~-----------~~~t~------~~~~---~~~~~~---~~~~~~l~i~D~~G~ 64 (198)
+|+++|+.++|||||+.+++....... +..+. +..+ .....+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987543221 00110 0011 011111 345688999999999
Q ss_pred cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
..|.......+..+|++++|+|+.+..+... ..++...... +.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence 9998878888899999999999988766543 2444444333 69999999999985
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=1.4e-18 Score=142.60 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=103.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC---CCCCCC-CccccceeEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT---FPTDYV-PTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~---~~~~~~-~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
-|.++|+.++|||||++++.+.. +.++.. ..+.+........ ++ ..+.+||+||++.|.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 47899999999999999998532 222211 1111111111112 23 34679999999999777777788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC--CEEEEec
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA--PVYIECS 159 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~S 159 (198)
+|+|++++..-+. .+.+..+... +.| +++|+||+|+.+... .....++...+....++ .+++++|
T Consensus 80 LVVda~eg~~~qT--~ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 80 LVVACDDGVMAQT--REHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 9999987533222 2333444443 556 579999999975321 00123444555544442 3799999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 029144 160 SKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~ 179 (198)
|++|.|++++++.|.+....
T Consensus 148 A~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 148 ATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCCCHHHHHHHHHhhcc
Confidence 99999999999999876544
No 216
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=1.5e-19 Score=142.07 Aligned_cols=165 Identities=27% Similarity=0.390 Sum_probs=124.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.+||+++|..|+|||||+.++....+++.-.+.. ...++..++.+. +...+.|++..+.-+.....-++.||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEE
Confidence 368999999999999999999999999877644333 222334444444 44679999865544444456788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHH-HHHHHHHc-CCCEEEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ-GEELRKLI-GAPVYIE 157 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 157 (198)
+||+.+++.+++.+...|+..++... .++|+|+|+||+|...... .+.+. ...+..++ .+-.+++
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie 154 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE 154 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence 99999999999999999999999988 6999999999999987643 11121 11222221 2224799
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
|||++..++.++|....++++.+
T Consensus 155 cSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhhHhhhhhhhheeecc
Confidence 99999999999999998887553
No 217
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=7.7e-19 Score=138.49 Aligned_cols=163 Identities=18% Similarity=0.110 Sum_probs=103.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc------cccc-----------------eeEEEEECC------eEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT------VFDN-----------------FSANVVVDG------STVN 55 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t------~~~~-----------------~~~~~~~~~------~~~~ 55 (198)
..++|+++|+.++|||||++++..... ..+... .... +......++ ....
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 568999999999999999998864321 110000 0000 000000011 1357
Q ss_pred EEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA 135 (198)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 135 (198)
+.+||+||++.|...+......+|++++|+|++++...... .+.+..+... ...|+++++||+|+.+...
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~-------- 151 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEK-------- 151 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHH--------
Confidence 88999999999988877778889999999999865311111 2222233322 2357899999999975321
Q ss_pred ccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 136 VPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 136 ~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.....+++..+.... +. +++++||++|+|+++++++|...+..
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCC
Confidence 001123334444332 33 79999999999999999999987653
No 218
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.80 E-value=3e-19 Score=129.44 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=102.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCC---CccccceeEEEEECCeEEEEEEEeCCCccCccc-----ccccccCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~~~ 79 (198)
||+++|++++||||+.+.++++..+.+.. +|... .....-....+.+++||+||+..+.. .....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~v--e~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDV--EKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SE--EEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCc--eEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999998876544322 22211 11111122336788999999976543 3466789999
Q ss_pred EEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC--CCE
Q 029144 80 VFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG--APV 154 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 154 (198)
++|||+|+.+.+-.+++ ..+ +..+....|+..+.+.++|+|+..+... ........+...+.+...+ ...
T Consensus 79 ~LIyV~D~qs~~~~~~l-~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r----~~~~~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDL-AYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDER----EEIFRDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp EEEEEEETT-STCHHHH-HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHH----HHHHHHHHHHHHHHHHHTT-TSEE
T ss_pred EEEEEEEcccccHHHHH-HHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHH----HHHHHHHHHHHHHHhhhccccceE
Confidence 99999999955544443 444 4455556689999999999999754320 0000011222333344444 126
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
++.+|..+ +.+.+.+..+++.+.....
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 77788777 7999999999999875433
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=5e-18 Score=123.56 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc------------------c-ce--e------------------EEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF------------------D-NF--S------------------ANVV 48 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~------------------~-~~--~------------------~~~~ 48 (198)
||+++|+.++|||||+.++..+.+......... . .+ . ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655331100000 0 00 0 0011
Q ss_pred ECCeEEEEEEEeCCCccCcccccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 126 (198)
.. ...+.+.|+||++.|.......+. .+|++++|+|+..+..-.+ ..++..+... ++|+++|+||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence 12 356779999999988665444443 6899999999987654333 4555666655 79999999999986532
Q ss_pred ccccCCCCCccccHHHHHHHHHH-------------------------cCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 127 QFLADHPGAVPITTAQGEELRKL-------------------------IGAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
. .....++...+... ....++|.+||.+|.|++++...|..
T Consensus 155 ~--------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 I--------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred H--------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 00111222222221 12347899999999999999877643
No 220
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.79 E-value=2.5e-18 Score=135.57 Aligned_cols=165 Identities=16% Similarity=0.074 Sum_probs=102.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----CC-ccccce-----------------eEEEEEC------CeEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VP-TVFDNF-----------------SANVVVD------GSTVN 55 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----~~-t~~~~~-----------------~~~~~~~------~~~~~ 55 (198)
...++|+++|+.++|||||+.++......... .. |....+ ......+ +....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45799999999999999999888542111100 00 110000 0000001 01357
Q ss_pred EEEEeCCCccCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC
Q 029144 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG 134 (198)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 134 (198)
+.+||+||++.|..........+|++++|+|++++. ..+.. . .+..+... ...|+++|+||+|+.+...
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~-~l~~l~~~-~i~~iiVVlNK~Dl~~~~~------- 156 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-E-HLMALDII-GIKNIVIVQNKIDLVSKER------- 156 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-H-HHHHHHHc-CCCcEEEEEEeeccccchh-------
Confidence 889999999988766555667789999999999653 22221 1 22233222 1347899999999975321
Q ss_pred CccccHHHHHHHHHHc--CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 135 AVPITTAQGEELRKLI--GAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.....++...+.... ...+++++||+++.|++++++.|.+.+..
T Consensus 157 -~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 -ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred -HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 001223444444332 12378999999999999999999987654
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=2.2e-18 Score=125.43 Aligned_cols=152 Identities=16% Similarity=0.064 Sum_probs=90.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCC------ccccceeEEEEECCeEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVP------TVFDNFSANVVVDGSTVN 55 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~------t~~~~~~~~~~~~~~~~~ 55 (198)
+|+++|+.++|||||+.+|+.. .+.. ++.+ ++.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 5899999999999999988642 1110 0000 11111122233344 67
Q ss_pred EEEEeCCCccCcccccccccCCCcEEEEEEECCChhh------HHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS------YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL 129 (198)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 129 (198)
+.+||+||+..|...+...++.+|++++|+|++++.. .... ........ .....|+++++||+|+.....
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~iiivvNK~Dl~~~~~-- 154 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT-REHALLAR-TLGVKQLIVAVNKMDDVTVNW-- 154 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccch-HHHHHHHH-HcCCCeEEEEEEccccccccc--
Confidence 7899999998877666667788999999999988521 1111 12222222 222468999999999973210
Q ss_pred cCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHH
Q 029144 130 ADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVK 167 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 167 (198)
.........+++..+....+. .+++++||++|.|++
T Consensus 155 --~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 155 --SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred --cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000000112233333444433 369999999999987
No 222
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=1.1e-17 Score=119.92 Aligned_cols=171 Identities=12% Similarity=0.117 Sum_probs=101.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-cee-EEEEEC-CeEEEEEEEeCCCccCcccc-----cccccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFS-ANVVVD-GSTVNLGLWDTAGQEDYNRL-----RPLSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~-----~~~~~~~ 77 (198)
+++|+++|.+|+|||||+|.+.+.........+.+. ... ....+. .....+.+||+||....... ....+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543322222210 000 000111 11235789999997543221 2233667
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC-CccccHHHHHHHHH----H--c
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG-AVPITTAQGEELRK----L--I 150 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~----~--~ 150 (198)
+|+++++.+. .+......|+..+... +.|+++|+||+|+............ ......++.++.+. . .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 8988887542 2333335667777776 7899999999999543210000000 01111122222222 2 2
Q ss_pred CCCEEEEeccC--CCCCHHHHHHHHHHHHcCCCc
Q 029144 151 GAPVYIECSSK--TQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 151 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~ 182 (198)
..+++|.+|+. .+.++..+.+.++..+...+.
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 34578999999 579999999999998876443
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.2e-17 Score=131.29 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=106.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCC-----------CCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-----------DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-----------~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
...++|+++|+.++|||||+++|+...... ...+.. +... .....+......+.++|+||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 467899999999999999999998531100 000000 0011 1112233334567799999999887
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
......+..+|++++|+|++.+..-.. .+++..+... ++| +++++||+|+.+... ......++...+.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~~~l 158 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHHHHH
Confidence 766667788999999999987543332 2444445544 788 678899999974321 0001223555555
Q ss_pred HHcCC----CEEEEeccCCCC--------CHHHHHHHHHHHHcC
Q 029144 148 KLIGA----PVYIECSSKTQQ--------NVKAVFDAAIKVVLQ 179 (198)
Q Consensus 148 ~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~~ 179 (198)
...++ .+++++||++|. ++.++++.+.+.+..
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 55553 379999999983 678888888877653
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=1.5e-17 Score=130.79 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=95.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCC-----------CCC------CCCccccceeEEEEECCeEEEEEEEeCCCcc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF-----------PTD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~-----------~~~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (198)
+.+.++|+++|+.++|||||+++|+.... .-. ....+.+ .....+......+.+||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 34678999999999999999999974200 000 0111111 1222333344667899999999
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHH
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGE 144 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (198)
.|.......+..+|++++|+|+..+..... .+.+..+... ++|.+ +++||+|+.+... ......+++.
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~ 155 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence 887666666778999999999987543332 2334444444 67765 6899999975321 0001234566
Q ss_pred HHHHHcCC----CEEEEeccCCCC
Q 029144 145 ELRKLIGA----PVYIECSSKTQQ 164 (198)
Q Consensus 145 ~~~~~~~~----~~~~~~Sa~~~~ 164 (198)
.+...++. .+++++||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 66666653 479999999874
No 225
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=2e-17 Score=119.94 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC--CCCCCCCc---------c---ccce---eEEEEEC--------CeEEEEEEEeCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYVPT---------V---FDNF---SANVVVD--------GSTVNLGLWDTA 62 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t---------~---~~~~---~~~~~~~--------~~~~~l~i~D~~ 62 (198)
+|+++|+.++|||||+.+|+... +......+ . +..+ .....+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998542 11110000 0 0000 1112222 346889999999
Q ss_pred CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
|+..|.......++.+|++++|+|+.++...+.. ..+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence 9999999888999999999999999987666543 333333333 68999999999986
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=3e-17 Score=129.15 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=105.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC-------C----CCCCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------F----PTDYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~-------~----~~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
...++|+++|+.++|||||+++|+... + ..+..+.. +... .....+......+.|+||||+..|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 457899999999999999999998621 0 00000000 0001 1112232333567799999998887
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
......+..+|++++|+|+..+..... .+++..+... ++|.+ +++||+|+.+... ......+++..+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~~l 158 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRELL 158 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHHHH
Confidence 666677889999999999987543332 2444445444 68866 5799999964321 1112233556666
Q ss_pred HHcCC----CEEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029144 148 KLIGA----PVYIECSSKTQQ----------NVKAVFDAAIKVVL 178 (198)
Q Consensus 148 ~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 178 (198)
..+++ .+++++||.++. ++.++++.|.+.+.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 66543 368999999984 67888888887654
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.9e-17 Score=128.11 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=114.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.=|+++|+..-|||||+..+................+. ..+..+ ...-.+.|.|||||+.|..++.+...-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 45667999999999999999999988776554444444443 223332 1234677999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-------c-CCC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-------I-GAP 153 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 153 (198)
++|+++++.---+.. +-++..+.. +.|+++++||+|.++.+ .+....-.++ + +-.
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCce
Confidence 999999986444433 223444444 99999999999998643 2222222222 2 223
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.++++||++|+|+++++..+.-....
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999988765543
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=7.1e-17 Score=118.90 Aligned_cols=156 Identities=18% Similarity=0.261 Sum_probs=112.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc-------cccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~~~ 77 (198)
...|-+||.|++|||||++.+...+. ...|..|+.......+.+++-. .+.+-|+||.-.-.++.+ ..++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 34688999999999999999987643 4567777744433344454422 277999999654433332 23456
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 78 ADVFLLAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
+...+||+|++.+ .-++.+ ..+..++..+- .+.|.++|+||+|+++.+ .+.+.+++....
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq 340 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQ 340 (366)
T ss_pred hceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcC
Confidence 8999999999988 556665 55555555443 589999999999997532 123567777777
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
.+.++++||++++++.++++.+-+.
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhhc
Confidence 6569999999999999999887653
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=4.4e-17 Score=128.68 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=97.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCC--CC---------CCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TD---------YVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~---------~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~ 67 (198)
+...++|+++|++++|||||+++++...-. .. ..+.. +... .....+......+.+.|+||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456799999999999999999999864110 00 00000 0000 011122223356679999999888
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
.......+..+|++++|+|+..+..-+. .+.+..+... ++| +++++||+|+.+... ......+++..+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~~~ 157 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVREL 157 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHHHH
Confidence 7766677889999999999987543332 3444455544 688 778999999975321 001122355555
Q ss_pred HHHcCC----CEEEEeccCCCCC
Q 029144 147 RKLIGA----PVYIECSSKTQQN 165 (198)
Q Consensus 147 ~~~~~~----~~~~~~Sa~~~~~ 165 (198)
....++ .+++.+||.+|.+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHhCCCCCcceEEEcchhhccc
Confidence 555543 4789999998863
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5e-17 Score=130.84 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=119.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC-CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc------cccccc--C
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--R 76 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~--~ 76 (198)
..+|+++|.||+|||||+|++.+. ....++...+.+.........+.. +++.|+||.-.... ..+.++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 456999999999999999999975 446788888888888888888865 55999999644331 122333 3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
.+|+++-|+|++|-+-.- .+.-++.+. +.|++++.|++|..+.+. ..-+..++.+..|. |++
T Consensus 81 ~~D~ivnVvDAtnLeRnL----yltlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNL----YLTLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHH----HHHHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence 579999999999854322 222344444 899999999999987653 33456777888998 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++||++|.|++++..++.+......
T Consensus 143 ~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 143 PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999998765554
No 231
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=4.4e-17 Score=121.68 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=89.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC--CCCC-----------CCCC------ccccceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN--TFPT-----------DYVP------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~--~~~~-----------~~~~------t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
+|+++|++++|||||+++++.. .... ++.+ .+.......+.+++ ..+.+|||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999742 1110 0000 01111112233444 667799999998888
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK 148 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (198)
..+...++.+|++++|+|+.+...-.. ..+...+... ++|+++++||+|+.+... ....++++....
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a~~---------~~~~~~l~~~l~ 145 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGADF---------FRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHhC
Confidence 888889999999999999987654332 2444445544 799999999999975321 012333444433
Q ss_pred HcCCCEEEEeccCC
Q 029144 149 LIGAPVYIECSSKT 162 (198)
Q Consensus 149 ~~~~~~~~~~Sa~~ 162 (198)
....+..+++|+..
T Consensus 146 ~~~~~~~~Pisa~~ 159 (270)
T cd01886 146 ANPVPLQLPIGEED 159 (270)
T ss_pred CCceEEEeccccCC
Confidence 33443456677763
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=1.7e-16 Score=119.02 Aligned_cols=112 Identities=24% Similarity=0.201 Sum_probs=76.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCC-----CCcc-c-------------cceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----VPTV-F-------------DNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~-----~~t~-~-------------~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
+|+++|++|+|||||+++++...-.... ..++ . ......+.+++ +.+++|||||+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999753211000 0010 0 00011223344 667899999998887
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
..+...++.+|++++|+|+++....... .....+... ++|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC
Confidence 7778888999999999999887655433 223344444 7999999999998754
No 233
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.8e-16 Score=110.43 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=107.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCc----------cCccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ----------EDYNRLR 71 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 71 (198)
++...-|+++|.+|+|||||+|++++..-......|.+... ...+.+++. +.+.|.||- +.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 44566899999999999999999999764333444554333 333445543 569999992 2333344
Q ss_pred ccccCC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc--HHHHH-H
Q 029144 72 PLSYRG---ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT--TAQGE-E 145 (198)
Q Consensus 72 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~-~ 145 (198)
..+++. ..++++++|+..+..-.+. +.++.+... ++|+++++||+|..+... .. ..... .
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~~k~l~~v~~~ 163 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE----------RNKQLNKVAEE 163 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH----------HHHHHHHHHHH
Confidence 445543 4588899999877665544 667777777 999999999999976432 11 11111 2
Q ss_pred HHHHcCCCE-EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 146 LRKLIGAPV-YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 146 ~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+........ ++..|+.++.|++++...|.+.+..
T Consensus 164 l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 164 LKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred hcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222222211 6678999999999999999887643
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=1.1e-16 Score=119.53 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=77.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC--CCCCC--------CCCccccc-----------eeEEEEECCeEEEEEEEeCCCcc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTD--------YVPTVFDN-----------FSANVVVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~--------~~~t~~~~-----------~~~~~~~~~~~~~l~i~D~~G~~ 65 (198)
-+|+++|++|+|||||+++++.. .+... ...+..+. ......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 37999999999999999999852 11110 00011110 01122233445778899999999
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
+|.......++.+|++++|+|++++..... ..+....... ++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 888766677899999999999987643322 3344444443 7999999999998654
No 235
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2.6e-15 Score=111.19 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=110.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-------cccccccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-------RLRPLSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~ 77 (198)
-..++++|.|++|||||++.+.+-.. ...|..|+...++..+.+++ ..+|+.|+||.-.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45899999999999999999997643 56788899888999999998 667799999843221 223346789
Q ss_pred CcEEEEEEECCChhh-HHHHHHHHHHHHh---------------------------------------------------
Q 029144 78 ADVFLLAFSLISKAS-YENVAKKWIPELR--------------------------------------------------- 105 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~--------------------------------------------------- 105 (198)
||++++|+|+....+ .+-+..++ ....
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~EL-e~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIEREL-EDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHH-HhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 999999999986554 22221111 1110
Q ss_pred ---------------hhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144 106 ---------------HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 106 ---------------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (198)
...--+|.+.|.||.|+.. .++...+.+.. .++.+||..+.|++++.
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~ 281 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELK 281 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHH
Confidence 0001259999999999954 34555555555 46889999999999999
Q ss_pred HHHHHHHc
Q 029144 171 DAAIKVVL 178 (198)
Q Consensus 171 ~~i~~~~~ 178 (198)
+.|.+.+-
T Consensus 282 e~i~~~L~ 289 (365)
T COG1163 282 ERIWDVLG 289 (365)
T ss_pred HHHHHhhC
Confidence 99999873
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.70 E-value=4.9e-16 Score=122.23 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=103.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCC---C---C-----------CCCccccceeEEEEECCeEEEEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---T---D-----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~---~---~-----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (198)
...++|+++|+.++|||||+++|+..... . . ....+.+ .....+......+.+.||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence 46789999999999999999999863110 0 0 0011111 11122323335677999999988
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
|.......+..+|++++|+|+..+..-.. .+++..+... +.|.+ +++||+|+.+... ......++...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence 87766677889999999999987543332 3444555555 78976 5899999974321 00012234444
Q ss_pred HHHHcCC----CEEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029144 146 LRKLIGA----PVYIECSSKTQQ----------NVKAVFDAAIKVVL 178 (198)
Q Consensus 146 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 178 (198)
+....++ .+++.+||.++. ++.++++.|.+.+.
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5444432 368999999875 56777777777543
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=4.3e-16 Score=125.89 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCCCC---------------CCCcc---ccce-eEEEEECCeEEEEEEEeCCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTD---------------YVPTV---FDNF-SANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~--~~~~~~---------------~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G 63 (198)
+.-+|+++|+.++|||||+++++. +.+... +.+.. +..+ .....+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999974 211100 00000 0111 11122223347788999999
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
+..|.......++.+|++|+|+|+++..... . ..+....... ++|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-T-RKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-H-HHHHHHHHhc--CCCEEEEEECCcccc
Confidence 9999877777889999999999998764332 2 3444444444 899999999999875
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=1.1e-16 Score=126.21 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=92.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCCCC----------CCcc-------------cc------ce-eEEEEECCeEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV-------------FD------NF-SANVVVDGSTV 54 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~--~~~~~----------~~t~-------------~~------~~-~~~~~~~~~~~ 54 (198)
++|+++|+.++|||||+.+++... +.... ..+. .+ .. ...........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999987431 11100 0000 00 00 00111222335
Q ss_pred EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC
Q 029144 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG 134 (198)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 134 (198)
.+.|+|+||++.|.......+..+|++++|+|+..+..-+.. +....+... ...++++++||+|+.+... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~------~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDE------E 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchH------H
Confidence 678999999998876666678899999999999866433322 222222222 1346889999999964221 0
Q ss_pred CccccHHHHHHHHHHcCC--CEEEEeccCCCCCHHH
Q 029144 135 AVPITTAQGEELRKLIGA--PVYIECSSKTQQNVKA 168 (198)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 168 (198)
......++...+....+. .+++++||++|+|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 000112233334444443 2699999999999885
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=4.1e-16 Score=124.95 Aligned_cols=158 Identities=14% Similarity=0.079 Sum_probs=93.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCC--CCCCC----------CCcc-------------------ccceeE-EEEEC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV-------------------FDNFSA-NVVVD 50 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~----------~~t~-------------------~~~~~~-~~~~~ 50 (198)
....++|+++|+.++|||||+.+++... +.... ..++ +..+.. .....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3467999999999999999999987542 11100 0100 000111 11122
Q ss_pred CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA 130 (198)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 130 (198)
.....+.|+||||++.|.......+..+|++++|+|+..+..-... +....+... ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~l-g~~~iIvvvNKiD~~~~~~--- 177 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLL-GIKHLVVAVNKMDLVDYSE--- 177 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHh-CCCceEEEEEeeccccchh---
Confidence 2335677999999988876555567899999999999865432221 111122222 1357899999999964221
Q ss_pred CCCCCccccHHHHHHHHHHcC---CCEEEEeccCCCCCHHHH
Q 029144 131 DHPGAVPITTAQGEELRKLIG---APVYIECSSKTQQNVKAV 169 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~ 169 (198)
.......++...+....+ ..+++++||++|.|+.++
T Consensus 178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 000011122333333333 247999999999999764
No 240
>PRK13351 elongation factor G; Reviewed
Probab=99.69 E-value=3.2e-16 Score=131.30 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=82.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCC--CC-----------CCCCCcc---ccce---eEEEEECCeEEEEEEEeCCC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FP-----------TDYVPTV---FDNF---SANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~-----------~~~~~t~---~~~~---~~~~~~~~~~~~l~i~D~~G 63 (198)
.++..+|+++|+.++|||||+++++... .. .++.+.. +..+ ...+.+++ ..+++|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCC
Confidence 3456799999999999999999998532 10 0000000 0001 11233343 6788999999
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
+.+|...+..+++.+|++++|+|++++...... ..| ..+... ++|+++++||+|+...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 999988888899999999999999987766544 333 344444 7999999999998854
No 241
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.3e-15 Score=121.13 Aligned_cols=162 Identities=20% Similarity=0.193 Sum_probs=100.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC------CCCC-----C------CCCccccceeEEEEECCeEEEEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFPT-----D------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~------~~~~-----~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (198)
...++|+++|+.++|||||+++|... .... + ....+.+. ....+.....++.+.||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 45789999999999999999998621 1000 0 01111111 1122333345678999999988
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
|.......+..+|++++|+|+..+..-+. .+.+..+... ++| +++++||+|+.+... ......++..+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~~ 205 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELRE 205 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHHH
Confidence 87666566678999999999987643332 3444555555 788 478899999975321 00011123334
Q ss_pred HHHHcCC----CEEEEeccC---CCCC-------HHHHHHHHHHHHc
Q 029144 146 LRKLIGA----PVYIECSSK---TQQN-------VKAVFDAAIKVVL 178 (198)
Q Consensus 146 ~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~ 178 (198)
+....++ .+++.+|+. ++.| +.++++.+.+.+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 4433322 368888876 4555 7788888877654
No 242
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.68 E-value=4.5e-16 Score=123.76 Aligned_cols=159 Identities=14% Similarity=0.081 Sum_probs=100.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCC--CCC------------------------CCCCccc---cce-eEEEEECCe
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------------------------DYVPTVF---DNF-SANVVVDGS 52 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~~------------------------~~~~t~~---~~~-~~~~~~~~~ 52 (198)
+...++|+++|+.++|||||+.+++... +.. +..+... ..+ .........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3457899999999999999998887421 110 0001000 000 011112334
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 125 (198)
...+.++|+|||++|.......+..+|++|+|+|+++... + ... .+.+..+... ++| +++++||+|+.+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~--gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTL--GVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence 5678899999999999888888999999999999987421 0 122 2333333333 674 6888999998621
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA 168 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (198)
.. .........++++.+....++ .+|+++||.+|+|+.+
T Consensus 161 ~~----~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KY----SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hh----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 10 000001234566677776663 3699999999999853
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.68 E-value=9.2e-16 Score=122.57 Aligned_cols=150 Identities=21% Similarity=0.188 Sum_probs=95.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC------CCCCC-----CCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT------FPTDY-----VPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~------~~~~~-----~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
...++|+++|+.++|||||+++|+... ..+.+ .+.. +..+ .....+......+.++|+||++.|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 457899999999999999999998521 11100 0001 0001 0111122233567799999999988
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
......+..+|++++|+|+.++...+. .+++..+... ++| +++++||+|+.+... ......+++..+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~~l 227 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVRELL 227 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHHHHH
Confidence 777777788999999999987654433 3444455555 788 778999999975321 0011223455555
Q ss_pred HHcC----CCEEEEeccCCCC
Q 029144 148 KLIG----APVYIECSSKTQQ 164 (198)
Q Consensus 148 ~~~~----~~~~~~~Sa~~~~ 164 (198)
...+ ..+++.+|+.++.
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HhcCCCcCcceEEEEEccccc
Confidence 5542 2368999998875
No 244
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.2e-16 Score=114.59 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=112.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC-C-ccccceeEEEEECCeEEEEEEEeCCCccC-------ccccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-P-TVFDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPL 73 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~ 73 (198)
+..+++|+++|..|+||||++|+++.+...+... + +..........+++ -.+.+||+||-++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4568999999999999999999999765433211 1 11111111222344 4577999999655 4455666
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC-----CCCCccccHHHH---HH
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD-----HPGAVPITTAQG---EE 145 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~---~~ 145 (198)
.+...|.++++.++.|+.--.+. ..|.+.+..- -+.++++++|.+|.......+.. .........+.+ .+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 77889999999999988755544 4444444433 35899999999999876432221 122222222222 23
Q ss_pred HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+++. ..|++.+|...+.|++++...+++.+...
T Consensus 192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhh--cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 3333 33677788899999999999999988643
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=4.4e-16 Score=123.86 Aligned_cols=159 Identities=15% Similarity=0.114 Sum_probs=98.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCCccccc-ee---EEEEECCe
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTVFDN-FS---ANVVVDGS 52 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~t~~~~-~~---~~~~~~~~ 52 (198)
+...++|+++|+.++|||||+.+++.. .+.. +..+..... .. ........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 446789999999999999999988752 2111 000111000 00 11112333
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 125 (198)
...+.|+|+||+.+|.......+..+|++++|+|+..+.. + ... .+.+..+... ++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccc
Confidence 4678899999999998877788899999999999987531 0 122 2333344444 666 6789999995321
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA 168 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (198)
.. .........+++..+....++ .+++++|+.+|+|+.+
T Consensus 161 ~~----~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NY----SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hh----hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 00 000011233444555554443 4689999999999864
No 246
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=9.3e-17 Score=111.80 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=73.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCccccccc---ccCCCcEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVF 81 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~---~~~~~~~~ 81 (198)
.-.|+++|+.|+|||+|+.+|..+...+...+. ..... ..+ ......+.++|+|||++.+..... ++.++.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 346999999999999999999998654443332 22111 111 112234669999999988754333 36789999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 029144 82 LLAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (198)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~ 125 (198)
|||+|.+. .....+..+.++..+.... ..+|++|++||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 4556666566666555433 58999999999999764
No 247
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.9e-15 Score=118.55 Aligned_cols=166 Identities=23% Similarity=0.205 Sum_probs=117.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCC--------------CCCCccccceeEEEE-ECCeEEEEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPT--------------DYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~--------------~~~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~ 66 (198)
++.=++.|+-+-.-|||||..+++... +.. ....-+.......+. .+++.+.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 345588999999999999999987531 111 001111001111222 246779999999999999
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
|.....+.+.-++++++|+|++.+...+.. ..+...++. +..+|.|+||+|++..+. .....+..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l 204 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL 204 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence 999999999999999999999998877776 333334443 688999999999987542 1122233344
Q ss_pred HHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 147 RKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
....+. +++.+||++|.|+.++|..|++.+..+.-.
T Consensus 205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 444444 688999999999999999999998765543
No 248
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=3.3e-15 Score=112.06 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=89.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCC----------CCCccc-cceeEEEEECCeEEEEEEEeCCCccCcc-----
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN----- 68 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~----- 68 (198)
-.++|+++|.+|+|||||++++++..+... ..+|.. ......+..++..+.+.+|||||...+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998866433 222322 2223344556777899999999943221
Q ss_pred ---------------------cccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 69 ---------------------RLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 69 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
..+...+. .+|+++++++.+... +......++..+.. .+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 11112333 367888888876421 21111244444443 6899999999999653
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
.. .........+.+..+++ .+|.....
T Consensus 159 ~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~ 185 (276)
T cd01850 159 EE--------LKEFKQRIMEDIEEHNI-KIYKFPED 185 (276)
T ss_pred HH--------HHHHHHHHHHHHHHcCC-ceECCCCC
Confidence 21 01234456666777777 56665543
No 249
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=2.6e-15 Score=114.62 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=108.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC---------cccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~ 74 (198)
....|.++|..|+|||||+|++.+... ..+.-.++-+.....+.+.+ ...+.+-||.|--+ |.+.. .-
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence 467899999999999999999986533 34444445555555555553 23455999999322 22221 12
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
...+|+++.|+|++++...+.+ ......+.... ...|+++|.||+|+..+. .......... +
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-~ 331 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-P 331 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-C
Confidence 3579999999999999766666 55556666543 479999999999986542 1112222221 2
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
..+.+||++|.|++.++..|.+.+...
T Consensus 332 ~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 332 NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 467899999999999999999988643
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=4.7e-15 Score=112.83 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=53.7
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ- 64 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~i~D~~G~- 64 (198)
|+++|.+++|||||++++.+.... .+|..++.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987542 2333333222211111 122 3367999999997
Q ss_pred ---cCcccccccc---cCCCcEEEEEEECC
Q 029144 65 ---EDYNRLRPLS---YRGADVFLLAFSLI 88 (198)
Q Consensus 65 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 88 (198)
+.+..+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3344443343 78999999999996
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=6.9e-16 Score=128.09 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=93.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC----------CCCcccccee--------------------EEEEECC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNFS--------------------ANVVVDG 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~----------~~~t~~~~~~--------------------~~~~~~~ 51 (198)
...++|+++|++++|||||+++++... +... ...++.+.+. ....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 457899999999999999999998532 2110 0111100000 0011112
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD 131 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 131 (198)
....+.|+||||++.|.......+..+|++++|+|+..+..-+.. +....+... ...|+++++||+|+.+...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~---- 174 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQ---- 174 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchh----
Confidence 234567999999988865555667899999999999765432221 222222222 1357889999999964211
Q ss_pred CCCCccccHHHHHHHHHHcCC--CEEEEeccCCCCCHHH
Q 029144 132 HPGAVPITTAQGEELRKLIGA--PVYIECSSKTQQNVKA 168 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 168 (198)
........+...+....++ .+++++||++|.|+.+
T Consensus 175 --~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 --EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0000112233344445554 2589999999999874
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=2.5e-15 Score=98.75 Aligned_cols=105 Identities=23% Similarity=0.268 Sum_probs=71.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------cccccccC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSYR 76 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~~~ 76 (198)
+|+++|.+|+|||||++++++... .....+++.......+.+++..+ .++||||...-. ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999997532 33334444444444556677555 599999964321 11222347
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (198)
.+|++++|+|++++.. +.. ..+++.++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999887432 222 45555554 48999999998
No 253
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=108.68 Aligned_cols=162 Identities=21% Similarity=0.197 Sum_probs=107.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----ccccc---cCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRPLS---YRGAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~~~~---~~~~~ 79 (198)
.|-+||.|++|||||++.+..-+. ..+|..|+....-..+.+. ..-.+.+-|+||.-.-.+ +-..| +..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 577999999999999999986533 4567777755544444442 223466999999533221 22223 34578
Q ss_pred EEEEEEECCChhh---HHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 80 VFLLAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
+++.|+|++..+. .++. ..+...+..+. .+.|.+||+||+|+..+.+ ........+....++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence 9999999985543 4444 45555666554 5899999999999754432 2222333444444543
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
..+.+||.++.|+++++..+.+.+....
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 3333999999999999999998876654
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=3.9e-15 Score=118.31 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=102.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCC---CCCC-CCcc-ccceeEE-------------E-EECC-------------
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDY-VPTV-FDNFSAN-------------V-VVDG------------- 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~---~~~~-~~t~-~~~~~~~-------------~-~~~~------------- 51 (198)
...++|.++|+-..|||||+.+|.+-.. .++. ...+ .--|... + ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999985321 1110 0000 0000000 0 0000
Q ss_pred ---eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144 52 ---STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 52 ---~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 127 (198)
....+.|+|+||++.|.......+..+|++++|+|+..+. ..+. .+.+..+... .-.|+++|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT--~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT--SEHLAAVEIM-KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh--HHHHHHHHHc-CCCcEEEEEecccccCHHH
Confidence 0236789999999999877777788999999999998742 2222 2222333322 2346899999999975321
Q ss_pred cccCCCCCccccHHHHHHHHHHc--CCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 128 FLADHPGAVPITTAQGEELRKLI--GAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.....++...+.... ...+++++||++|.|++++++.|.+.+..+
T Consensus 189 --------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 189 --------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred --------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 001122333333221 233799999999999999999999866544
No 255
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=4e-15 Score=110.47 Aligned_cols=160 Identities=20% Similarity=0.210 Sum_probs=112.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCcc-C-ccccc------cccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-D-YNRLR------PLSY 75 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~-~~~~~------~~~~ 75 (198)
....|+|.|.||||||||++.+..-.. ..+|..|+.......+..++ ..+|++||||.- + ....+ -..+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 345799999999999999999987654 45677788666666666665 567799999942 1 11111 1122
Q ss_pred CC-CcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144 76 RG-ADVFLLAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA 152 (198)
Q Consensus 76 ~~-~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
+. .++++|++|.+ ++-+.+.. ..++..+...+. .|+++|.||+|..+.. ..+++......-+.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~ 310 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGG 310 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhcc
Confidence 22 67899999986 45567777 677777777765 9999999999997542 33444444455555
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.....+++..+.+++..-..+...+.+.
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 4467789999999998888887775544
No 256
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=4.8e-15 Score=124.14 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=81.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCC---CC--------------CCccccceeEEEEECCeEEEEEEEeCCCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT---DY--------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~---~~--------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (198)
+.-+|+++|+.++|||||+++++.. .... .. ..++.......+.+++ ..+.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence 4559999999999999999999742 1100 00 0111111223334444 677899999999
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
.|...+...++.+|++++|+|+.++...... .+...+... +.|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 8888788889999999999999887655443 333444444 7999999999999753
No 257
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-14 Score=113.25 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=111.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
+++--|-++|+..-|||||+..|....+.......+...+ ...+.. ++ -.++|.|||||..|..++.+...-.|++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEE
Confidence 4677799999999999999999998766554444443333 222333 44 4567999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHH------Hc-CCC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRK------LI-GAP 153 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~-~~~ 153 (198)
++|+.+.|+---+.. +-+...+. .+.|+|+++||+|.+... .+... ++.. ++ |-.
T Consensus 229 VLVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdV 291 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDV 291 (683)
T ss_pred EEEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCce
Confidence 999999886433332 22222333 389999999999987642 22222 2222 22 334
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+++++||++|.|++.+.+.+.-.+
T Consensus 292 QvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 292 QVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eEEEeecccCCChHHHHHHHHHHH
Confidence 689999999999999998887655
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.1e-15 Score=116.09 Aligned_cols=167 Identities=22% Similarity=0.223 Sum_probs=110.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---------cccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPL 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~ 73 (198)
..++|+++|.||+|||||+|.|.+. .++.+...|+.+.+...+++++ +.+.+.||+|...-.. ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4689999999999999999999976 4567778899999999999999 5555999999755111 1123
Q ss_pred ccCCCcEEEEEEECCChhhHHHHH-HHHHHHHhhhC-------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 74 SYRGADVFLLAFSLISKASYENVA-KKWIPELRHYA-------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
.+..+|++++|+|+.-.++-++.. .+.+.....-. ...|+++++||.|+..+-. .....+......
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~------~~~~~~~~~~~~ 418 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP------EMTKIPVVYPSA 418 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc------cccCCceecccc
Confidence 456799999999994333222220 22233333221 2479999999999976521 000001001111
Q ss_pred HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.-...++...++|+++++|++.+.+.+.+.+...
T Consensus 419 -~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 419 -EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred -ccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 0111223456699999999999999998877543
No 259
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.3e-15 Score=102.10 Aligned_cols=156 Identities=17% Similarity=0.235 Sum_probs=111.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.=|++++|..|+|||||++.+..+.... +.||.-. .+..+.+.+ +.++.+|.+|+..-+..|+.++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHP-TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP-TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCC-ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 45689999999999999999998876532 3333311 122344555 6778999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH---HHHc----------
Q 029144 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL---RKLI---------- 150 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------- 150 (198)
+|+-|.+-+.+...++-..+.... .+.|+++.+||+|.+.. .+.++.+.. .+..
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a------------~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA------------ASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc------------ccHHHHHHHHHHHHHhcccccccccC
Confidence 999999988888555544444332 58999999999999875 233332211 1111
Q ss_pred -CC--CEEEEeccCCCCCHHHHHHHHHHH
Q 029144 151 -GA--PVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 151 -~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
+. ...|.||...+.+.-+.|.|+.+.
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 11 125668888888877777776654
No 260
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=1.9e-14 Score=116.10 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=75.5
Q ss_pred EEEEEEeCCCccCc-----ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144 54 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (198)
Q Consensus 54 ~~l~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 128 (198)
..+.|.||||...- .......+..+|+++||+|+....+..+. .+...+.....+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence 45679999997542 11233468899999999999876554443 45555655422369999999999964221
Q ss_pred ccCCCCCccccHHHHHHHHH------HcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 129 LADHPGAVPITTAQGEELRK------LIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
...+....+.. ......+|++||+.|.|++++++.|.+.
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 22334444322 1234469999999999999999999883
No 261
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.61 E-value=2e-15 Score=96.60 Aligned_cols=138 Identities=23% Similarity=0.202 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----CcccccccccCCCcEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~~~~~~i~ 83 (198)
|++++|..|+|||||.+++.++... |..|.. +++++. ..+||||.- .+.+........+|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7999999999999999999876531 111211 122221 167999942 232223344567999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|-+++++++.-.. .+ .... ..|+|-|++|.|++++ ...+..+++..+-|..++|++|+.+.
T Consensus 71 v~~and~~s~f~p--~f----~~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFPP--GF----LDIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCCc--cc----cccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence 9999998764433 11 1111 4669999999999864 34566778888889989999999999
Q ss_pred CCHHHHHHHHHHH
Q 029144 164 QNVKAVFDAAIKV 176 (198)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (198)
.|++++++.+...
T Consensus 132 ~gv~~l~~~L~~~ 144 (148)
T COG4917 132 QGVEELVDYLASL 144 (148)
T ss_pred ccHHHHHHHHHhh
Confidence 9999999888653
No 262
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=9.5e-15 Score=118.20 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=79.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh--CCCCCC--------CCCcc----------ccce-eEEEEECCeEEEEEEEeCC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD--------YVPTV----------FDNF-SANVVVDGSTVNLGLWDTA 62 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~~--------~~~t~----------~~~~-~~~~~~~~~~~~l~i~D~~ 62 (198)
.+..+|+++|++++|||||+++++. +.+... ...+. +..+ .....++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3567999999999999999999863 222110 00011 1111 1122334445788899999
Q ss_pred CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
|+..|.......++.+|++|+|+|+++..... . ..+...+... ++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~~--~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-T-RKLMEVTRLR--DTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-H-HHHHHHHHhc--CCCEEEEEECccccC
Confidence 99888876667789999999999998753222 2 3444444443 799999999999964
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=2.8e-14 Score=110.51 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=115.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCC--CCC--------------CCCCcc--ccceeEEEEE-CCeEEEEEEEeCCC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT--------------DYVPTV--FDNFSANVVV-DGSTVNLGLWDTAG 63 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~~--------------~~~~t~--~~~~~~~~~~-~~~~~~l~i~D~~G 63 (198)
.++.=+..++-+-.-|||||..|++... +.+ ...+-+ ...+.-.+.. ++..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 3445578899999999999999988532 111 011111 1111122222 45789999999999
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG 143 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (198)
|-+|.-...+.+..|.++++|+|++.+-..+.+ ......+.. +.-++-|+||+||+..+ .+..
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad-------------perv 148 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD-------------PERV 148 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC-------------HHHH
Confidence 999998888899999999999999998777777 344344444 57788889999998753 2222
Q ss_pred -HHHHHHcCC--CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 144 -EELRKLIGA--PVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 144 -~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
++..+-.|. ...+.+||++|.|++++++.|++.+..+.-
T Consensus 149 k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 149 KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 233333333 347889999999999999999999877653
No 264
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=8.2e-14 Score=99.82 Aligned_cols=163 Identities=19% Similarity=0.169 Sum_probs=99.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCC---CCccccceeEEEEECCeEEEEEEEeCCCccCccc-----------ccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----------LRP 72 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----------~~~ 72 (198)
++|+++|.+|+||||++|.+++....... .+.+.........+++ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987543222 1222222233334555 4567999999654321 111
Q ss_pred cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
....++|++++|+++.+ .+..+ ...++.+...+. -.+++++.|+.|....... ..-........+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~----~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTL----EDYLENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcH----HHHHHhccHHHHHHHHH
Confidence 23467899999999877 33222 344555555432 3688999999997653210 00000012445666666
Q ss_pred cCCCEEEEec-----cCCCCCHHHHHHHHHHHHcC
Q 029144 150 IGAPVYIECS-----SKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 150 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~ 179 (198)
.+. .|+..+ +..+.++++++..+-+.+..
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 554 344433 45678899999998887765
No 265
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.58 E-value=5.1e-14 Score=104.40 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=117.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCC----cEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA----DVFL 82 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~----~~~i 82 (198)
-+|+|+|..++|||||+.++.+..-...-..-...+....-..++...++.+|-..|......+..+.+... .++|
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi 132 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI 132 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence 479999999999999999998765222211111111122222344456788999888766555555555432 3789
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC------------------------------------------------------
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA------------------------------------------------------ 108 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------------------------ 108 (198)
++.|+++++.+-+..+.|...+..+.
T Consensus 133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL 212 (473)
T KOG3905|consen 133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL 212 (473)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence 99999999887666688876665330
Q ss_pred --------CCCCEEEEeecCCcccccccc-cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 109 --------PGVPIILVGTKLDLRDDKQFL-ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 109 --------~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
-++|++||.+|||........ ..+++........++.|+..+|. ..|.+|++...|++-++.+|++..+-
T Consensus 213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 146999999999995321110 11122223455667889999999 68889999999999999999998754
No 266
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=2.6e-14 Score=119.77 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=81.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCC-----C------------CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
++..+|+++|+.++|||||+++++.. ... . .....+.+.....+.+++ ..+.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 45679999999999999999999752 110 0 011111111223344455 56779999999
Q ss_pred cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
..|...+...++.+|++++|+|+.++...... ..+..+... +.|.++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88887788888999999999999887544433 444445444 7999999999999753
No 267
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.58 E-value=1.1e-13 Score=105.86 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=85.3
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 121 (198)
.+.+.+||++|+...+..|.+++.+++++++|+|+++. ..+.+....+...+.... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46688999999999999999999999999999999874 234444344444444332 6899999999999
Q ss_pred cccccccc-------cCCCCCccccHHHHHHHHHH-----c---CC-CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 122 LRDDKQFL-------ADHPGAVPITTAQGEELRKL-----I---GA-PVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 122 l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~---~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+....... ++..+. .-+.+.+..+... . +. ...+.++|.+..+++.+|+.+.+.+...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~-~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGP-PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 87643211 111110 1233333333222 1 11 1245689999999999999998877543
No 268
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.56 E-value=1.9e-13 Score=108.14 Aligned_cols=165 Identities=24% Similarity=0.327 Sum_probs=122.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
++.+.+.+.++|+.++|||.+++.|+++.+...+.++....+ ...+...+....+.+.|.+-. ....+...- ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 355789999999999999999999999988876666664444 444455577777888888754 222222222 67999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++++||.+++.++......+...... ...|+++|++|+|+.+..+ ...-...+++++++.++.+..|+
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~ 566 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISS 566 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeecc
Confidence 99999999999998884333222222 5899999999999987653 22222278899999888888898
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 029144 161 KTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (198)
..... .++|.+|+.++..++
T Consensus 567 ~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCCC-chHHHHHHHhhhCCC
Confidence 86334 899999999988877
No 269
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.56 E-value=5.7e-14 Score=120.17 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=94.1
Q ss_pred CHHHHHHHHhhCCCCCCCCCccccceeE-EEEECC----------------eEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 18 GKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDG----------------STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 18 GKttli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~----------------~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
+||||+..+.+..............+.. .+..+. ....+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999877655444444333322 111211 00127899999999998887778888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccc------cHHHH----HHH---H
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI------TTAQG----EEL---R 147 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~----~~~---~ 147 (198)
+++|+|++++..-+.. ..+..+... +.|+++|+||+|+.+.-......+....+ ...+. ..+ .
T Consensus 553 vlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L 628 (1049)
T PRK14845 553 AVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKL 628 (1049)
T ss_pred EEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH
Confidence 9999999874222221 223344444 78999999999996421100000000000 00010 000 0
Q ss_pred HH--------------cCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 148 KL--------------IGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 148 ~~--------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
.+ .+..+++++||++|+|+++++..+....
T Consensus 629 ~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 629 YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 11 2344789999999999999998876543
No 270
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.5e-14 Score=109.28 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=99.3
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCCccccc---e-eEEEEECC
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTVFDN---F-SANVVVDG 51 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~t~~~~---~-~~~~~~~~ 51 (198)
++...++++++|+..+|||||+-+|+.. .++. +...+..++ + ........
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 4567899999999999999999888743 2221 000111100 0 01111223
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 126 (198)
..+.++|.|+||+..|-........+||++|+|+|+.+.+.-.. ...+ ...+.....-..++|++||+|+.+-+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCCceEEEEEEcccccccC
Confidence 34678999999999998888888999999999999988742211 1011 11222222345678889999998632
Q ss_pred ccccCCCCCccccHHHHHHHHHHcCCC----EEEEeccCCCCCHHH
Q 029144 127 QFLADHPGAVPITTAQGEELRKLIGAP----VYIECSSKTQQNVKA 168 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~~i~~ 168 (198)
+ ........+...+....|+. +|+++|+..|.|+.+
T Consensus 162 e------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 E------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred H------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1 11112223333455554443 599999999998754
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=5.9e-14 Score=117.60 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=81.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh--CCCCC-----------------CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
++..+|+++|++++|||||+++++. +.... ....++.+.....+.+++ ..+.+.||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 3456999999999999999999974 21110 011111122223344455 56779999999
Q ss_pred cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
..|.......++.+|++++|+|+..+...++. .....+... ++|.++++||+|+.+.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88776666778889999999999877555443 344455555 7899999999999753
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.55 E-value=1.3e-13 Score=115.56 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=74.0
Q ss_pred ECCCCCCHHHHHHHHhhCC--CCC--CCC--Cccccc-------------eeEEEEECCeEEEEEEEeCCCccCcccccc
Q 029144 12 VGDGAVGKTCMLISYTSNT--FPT--DYV--PTVFDN-------------FSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (198)
Q Consensus 12 vG~~~~GKttli~~~~~~~--~~~--~~~--~t~~~~-------------~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 72 (198)
+|+.++|||||+++++... +.. ... .+..+. ....+.+.+ +.+.+|||||+..|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 6999999999999996431 111 000 011110 112233444 6788999999988877777
Q ss_pred cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
..++.+|++++|+|++........ .++..+... +.|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 888999999999999887665543 333344444 7999999999998743
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.55 E-value=3.4e-13 Score=105.65 Aligned_cols=83 Identities=23% Similarity=0.222 Sum_probs=55.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEE---------------------EC-CeEEEEEEEeCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VD-GSTVNLGLWDTA 62 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~l~i~D~~ 62 (198)
.++|.++|.+++|||||++++.+.... .+|..++.+....... .+ ...+.+++||+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 368999999999999999999976543 2444444222222111 11 123678999999
Q ss_pred Ccc----Ccccccccc---cCCCcEEEEEEECC
Q 029144 63 GQE----DYNRLRPLS---YRGADVFLLAFSLI 88 (198)
Q Consensus 63 G~~----~~~~~~~~~---~~~~~~~i~v~d~~ 88 (198)
|.. ....+...+ ++++|++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 953 233333344 78999999999996
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.53 E-value=1.1e-13 Score=100.44 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=72.2
Q ss_pred EEEEEEEeCCCccC-ccc-----cccccc--CCCcEEEEEEECC---ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144 53 TVNLGLWDTAGQED-YNR-----LRPLSY--RGADVFLLAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (198)
Q Consensus 53 ~~~l~i~D~~G~~~-~~~-----~~~~~~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (198)
.+...++|||||-. |.- .....+ ....++++|+|.. ++.+|-...-.-...+.+. ..|++++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence 46678999999843 321 111111 2345788888864 4555544323334444444 899999999999
Q ss_pred cccccccc-------------c--CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 122 LRDDKQFL-------------A--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 122 l~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+.+..... . .+.....+......-+-.-+.....+-+||.+|.|.+++|..+-+.+..
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 98764200 0 0111111111111111122333356789999999999999999887744
No 275
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.5e-14 Score=98.71 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=102.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccC---CCcEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFLL 83 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~~~~~i~ 83 (198)
-.|+++|+.++|||+|+.++..+....... ..........+++.. +.++|.|||++.+.....++. .+-+++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt--Siepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT--SIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee--eeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 469999999999999999999885433321 122233344444433 669999999987754444444 6889999
Q ss_pred EEECC-ChhhHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccccc--c------------cCCCCCccccH-----
Q 029144 84 AFSLI-SKASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQF--L------------ADHPGAVPITT----- 140 (198)
Q Consensus 84 v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~--~------------~~~~~~~~~~~----- 140 (198)
|+|.. ......+..+.+...+... ...+|++|+.||.|+.-.... + ..+...+.+..
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99974 3444555545555555554 257999999999999643220 0 00000000100
Q ss_pred -----HHHH--HHHHHc-CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 141 -----AQGE--ELRKLI-GAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 141 -----~~~~--~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
+++. +|.+-. .-..|.++|++++ +++++-+|+.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111 122211 1125788999988 999999998765
No 276
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-14 Score=115.18 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=108.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-------------C----CeEEEEEEEeCCCccCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------------D----GSTVNLGLWDTAGQEDY 67 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~----~~~~~l~i~D~~G~~~~ 67 (198)
+..=|||+|+..+|||-|+..+.+....+...+.+...+..++.. + ...--+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 344589999999999999998887655443333332222211110 0 11133669999999999
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC-------CCCcccc-
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH-------PGAVPIT- 139 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-------~~~~~~~- 139 (198)
..++.+....||.+|+|+|+..+-.-+.+ +-+..++.. +.|+||++||+|....-..+... .....+.
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999999876433333 334455555 89999999999986532111100 0000000
Q ss_pred ------HHHHHHHHHH-cC------------CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 140 ------TAQGEELRKL-IG------------APVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 140 ------~~~~~~~~~~-~~------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
...+.+|+.+ ++ ...++++||.+|+||.+++.+|++.....
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 0111122221 11 12356799999999999999999876443
No 277
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.50 E-value=8.1e-13 Score=101.94 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=83.7
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl 122 (198)
+.+.+||.+|+...+..|.+++.++++++||+|+++.+ .+.+....+...+.... .+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 55779999999999999999999999999999998742 34444344444444322 68999999999999
Q ss_pred ccccccc-------cCCCCCccccHHHHHHHHHH-----cC----C-CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 123 RDDKQFL-------ADHPGAVPITTAQGEELRKL-----IG----A-PVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 123 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~----~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
....-.. ++..+ ..+.+.+..+... .. . ...+.++|.+..++..+|+.+.+.+...
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g--~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKG--PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCC--CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 7643211 11111 1233333332221 11 1 1245688999999999999888876544
No 278
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.50 E-value=6.6e-13 Score=105.53 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=116.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEE-EE--ECCeEEEEEEEeCCCccCcccccccccCCC----
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VV--VDGSTVNLGLWDTAGQEDYNRLRPLSYRGA---- 78 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~-~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~---- 78 (198)
.-.|+|+|..++|||||+.+|.+.. .+.++.+-.|... +. ..+...++.+|.+.|...+..+....+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 3589999999999999999987543 3334443222221 11 112346788999998777777776666532
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhC--------------------------------------------------
Q 029144 79 DVFLLAFSLISKASYENVAKKWIPELRHYA-------------------------------------------------- 108 (198)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------------------------- 108 (198)
-++|+|+|.+.|+.+-+....|+..++.+.
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 388999999999877655566655554210
Q ss_pred ---C----------CCCEEEEeecCCccccccccc-CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHH
Q 029144 109 ---P----------GVPIILVGTKLDLRDDKQFLA-DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174 (198)
Q Consensus 109 ---~----------~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (198)
| ++|++||++|+|......... -......+...-++.++..+|+ ..|.+|++...+++.++.+|.
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHH
Confidence 0 369999999999865322110 0111122344457789999999 677899999999999999999
Q ss_pred HHHcCCCc
Q 029144 175 KVVLQPPK 182 (198)
Q Consensus 175 ~~~~~~~~ 182 (198)
+.++...-
T Consensus 261 h~l~~~~f 268 (472)
T PF05783_consen 261 HRLYGFPF 268 (472)
T ss_pred HHhccCCC
Confidence 98866443
No 279
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.49 E-value=1e-12 Score=97.10 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=77.3
Q ss_pred cCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144 65 EDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG 143 (198)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (198)
++|..+.+.+++++|.+++|+|+.++. ++..+ ..|+..+... ++|+++|+||+||.+... +..+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~~--~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEAQ--NIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEECcccCCCHH----------HHHHHH
Confidence 578888889999999999999999888 78777 7888776654 899999999999965432 333344
Q ss_pred HHHHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 144 EELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
..+ ...+. +++++||+++.|++++|..+.+
T Consensus 91 ~~~-~~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIY-RNIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHH-HHCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 444 34676 7999999999999999988764
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=2.5e-13 Score=114.27 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=79.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CC---------CCCCC-------ccccce-eEEEEECCeEEEEEEEeCCCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP---------TDYVP-------TVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~---------~~~~~-------t~~~~~-~~~~~~~~~~~~l~i~D~~G~~ 65 (198)
+..+|+++|+.++|||||+++++... +. .++.+ |..... ......++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45699999999999999999997531 10 01111 111111 1112245566889999999999
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
.|.......++.+|++++|+|+..+...+.. ..| ...... +.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~-~~~~~~--~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVL-RQALKE--NVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHH-HHHHHc--CCCEEEEEEChhccc
Confidence 9887777889999999999999875443332 222 233233 688899999999964
No 281
>PRK13768 GTPase; Provisional
Probab=99.48 E-value=2.8e-13 Score=100.56 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=70.7
Q ss_pred EEEEEeCCCccCcc---cccccccC---C--CcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 55 NLGLWDTAGQEDYN---RLRPLSYR---G--ADVFLLAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 55 ~l~i~D~~G~~~~~---~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
.+.+||+||+.+.. ..+..+++ . ++++++|+|+.......+.. ..|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 56799999986532 23322222 2 88999999996544333321 1222222211238999999999999765
Q ss_pred cccc-----cCC----------CCC--ccccHHHHHHHHHHcC-CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 126 KQFL-----ADH----------PGA--VPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 126 ~~~~-----~~~----------~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
.... ... ... .... ....+..+..+ ..+++++|++++.|+++++++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLS-LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHH-HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 3200 000 000 0000 00111122333 226899999999999999999988774
No 282
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=106.68 Aligned_cols=164 Identities=16% Similarity=0.044 Sum_probs=116.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---------ccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~ 74 (198)
..-.++++|.|++|||||++.+..... ..+|..|+...+.....+.. ..+++.||||.-+.-- .....
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 445789999999999999988876543 56777788766666666655 5667999999532110 00111
Q ss_pred cCCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH--HHHHHHHc
Q 029144 75 YRGADVFLLAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ--GEELRKLI 150 (198)
Q Consensus 75 ~~~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 150 (198)
.+-..+++|+.|++ ++.|.... -.+...+...+.+.|+|+|+||+|+..... ++.+. +.+...+.
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD 313 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence 12245788888886 56677776 677788888888999999999999987654 44443 22333334
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 151 GAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
+..+++++|+.+.+|+.++.....+.++..+
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 4348999999999999999988888775543
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=2e-12 Score=95.45 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=74.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---c-------c
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R 71 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~-------~ 71 (198)
...++|+++|.+|+|||||+|++++..... ...+++..........++ ..+.+|||||...... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 357999999999999999999999875422 222333322223334455 5677999999654421 0 1
Q ss_pred ccccC--CCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccccc
Q 029144 72 PLSYR--GADVFLLAFSLISKA-SYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 72 ~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~ 127 (198)
..++. ..+++++|..++... ...+ ..+++.+...+. -.++++|.||+|...+..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 11232 478888887665432 2221 344445554332 357999999999986544
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.45 E-value=2.5e-12 Score=92.03 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=63.6
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE--EEEeecCCcccccccccC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI--ILVGTKLDLRDDKQFLAD 131 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--iiv~nK~Dl~~~~~~~~~ 131 (198)
....+.++.|......... . -++.++.|+|+.+.++... .+. +++.. ++++||+|+.+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~---- 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG---- 154 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc----
Confidence 4455778888422222221 1 2578999999987665321 111 13334 88999999975311
Q ss_pred CCCCccccHHHHHHHHHH-cCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 132 HPGAVPITTAQGEELRKL-IGAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
...+...+..+. ....+++++||++|.|++++|+++.+.+.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 222333333333 23347999999999999999999997654
No 285
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=1.9e-12 Score=97.24 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=71.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-------cccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSY 75 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~ 75 (198)
+.++|+++|.+|+||||++|++++.... ....++...........++ ..+.++||||........ ..++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 6789999999999999999999987542 2222221111122233455 567899999976432111 1111
Q ss_pred --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccc
Q 029144 76 --RGADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK 126 (198)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~ 126 (198)
...|+++||..++... +......++..+...+. ..+++++.|+.|..+.+
T Consensus 115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 2589999996654321 11111334444444431 46789999999987543
No 286
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.2e-12 Score=98.16 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=101.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCC--C--------CC--CCccccce-----------------eEEEEE--
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T--------DY--VPTVFDNF-----------------SANVVV-- 49 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~--~--------~~--~~t~~~~~-----------------~~~~~~-- 49 (198)
|+....++.+-+|+..-||||||-||+.+.-. + .. ..+.+..+ ...+.+
T Consensus 1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 34567899999999999999999999865210 0 00 11111111 111111
Q ss_pred -CCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144 50 -DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (198)
Q Consensus 50 -~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 128 (198)
.-.+-++.+-|||||+.|...+-...+.||++|+++|+..+-.-+.-+. ..+.....=..+++++||+||.+-.+
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH---s~I~sLLGIrhvvvAVNKmDLvdy~e- 156 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH---SFIASLLGIRHVVVAVNKMDLVDYSE- 156 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH---HHHHHHhCCcEEEEEEeeecccccCH-
Confidence 1223456699999999999888888889999999999954433222222 22333333457788899999987442
Q ss_pred ccCCCCCccccHHHHHHHHHHcCCC--EEEEeccCCCCCHH
Q 029144 129 LADHPGAVPITTAQGEELRKLIGAP--VYIECSSKTQQNVK 167 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~ 167 (198)
+.......+...|+.+++.. .++++||+.|+|+-
T Consensus 157 -----~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 -----EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 11112334455677777653 48999999998864
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.43 E-value=7.9e-14 Score=102.27 Aligned_cols=121 Identities=19% Similarity=0.127 Sum_probs=60.9
Q ss_pred EEEEEeCCCccCccccccccc--------CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 029144 55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (198)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~ 125 (198)
.+.++|||||-++-..|...- ...-++++++|.....+.......++..+.... -+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 566999999987654443221 334588999998644332222122222222211 28999999999999872
Q ss_pred ccc--c------------cCCCCCccccHHHHHHHHHHcCCC-EEEEeccCCCCCHHHHHHHHHHHH
Q 029144 126 KQF--L------------ADHPGAVPITTAQGEELRKLIGAP-VYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 126 ~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
... . .... ...-.+...++....+.. .++.+|+.+++++.+++..+-+++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~--~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESD--YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT---HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 0 0000 001112222333345665 789999999999999999887754
No 288
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7e-13 Score=94.69 Aligned_cols=172 Identities=12% Similarity=0.149 Sum_probs=105.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-cc--ccccccCCCcEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NR--LRPLSYRGADVFLL 83 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-~~--~~~~~~~~~~~~i~ 83 (198)
-+|+++|...+||||+....++...+.++-......-...-.+.+.-+.+++||.|||-.+ .. .....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 4599999999999999987776654332111111000111112335578899999998654 22 23456889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
|+|+++. +.+....+...+.+.. |++.+-+...|.|...+......+....+...+++.......--..|+ ..+
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~-LTS 184 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFY-LTS 184 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEE-Eee
Confidence 9998753 3333355555555433 789999999999988765432222222222333333322222111344 455
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 029144 161 KTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (198)
....+|.|.|.++++.+...-
T Consensus 185 IyDHSIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 185 IYDHSIFEAFSKVVQKLIPQL 205 (347)
T ss_pred ecchHHHHHHHHHHHHHhhhc
Confidence 556899999999999887643
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.41 E-value=1.5e-12 Score=100.13 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=84.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCcc--ccce-eEEEEECCeEEEEEEEeCCCccCccc-----cccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNF-SANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSY 75 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~--~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~ 75 (198)
.+++|+|+|.+|+|||||||++.+-.-.++ ..+|. .... ...+... ..-.+.+||.||..--.. +...-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 578999999999999999999986432221 12221 1111 1222221 122466999999532211 112335
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc--cccccccCCCCCccccH----HHHHHHHHH
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQFLADHPGAVPITT----AQGEELRKL 149 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~----~~~~~~~~~ 149 (198)
...|.+|++.+-. |....-.+...++.. ++|+.+|-+|+|.. ..+. ...+..+. ++.++.+.+
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~-----~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR-----RKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC-----C-STT--HHTHHHHHHHHHHH
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc-----cCCcccCHHHHHHHHHHHHHH
Confidence 6678888877642 333334667788887 89999999999962 1111 11111222 222322222
Q ss_pred ------cCCCEEEEeccCC--CCCHHHHHHHHHHHHcCCCc
Q 029144 150 ------IGAPVYIECSSKT--QQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 150 ------~~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~~~~ 182 (198)
...+++|-+|+.+ ..+...+.+.+.+.+.....
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 1335688899987 45688888888877765444
No 290
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=3.3e-13 Score=95.57 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=100.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCC-CC--CccccceeEEEEECCeEEEEEEEeCCCccCc-----ccccccccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~~ 77 (198)
.-||+++|..|+||||+-..++.+....+ .. +|...........++ ..+.+||++||+.+ .+.....+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhhee
Confidence 45899999999999999876665533211 11 111111122222333 77889999999854 3466788999
Q ss_pred CcEEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 78 ADVFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
.+++++|||++..+-..++ ..+ ++.+-.+.|...+....+|+|+...+. +......-.+....+....++ .
T Consensus 82 V~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~----r~~if~~r~~~l~~~s~~~~~-~ 155 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA----RELIFQRRKEDLRRLSRPLEC-K 155 (295)
T ss_pred heeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch----HHHHHHHHHHHHHHhcccccc-c
Confidence 9999999999987665555 333 445555667888889999999976432 011111111222223333343 5
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++.+|..+ +.+......+...+...
T Consensus 156 ~f~TsiwD-etl~KAWS~iv~~lipn 180 (295)
T KOG3886|consen 156 CFPTSIWD-ETLYKAWSSIVYNLIPN 180 (295)
T ss_pred ccccchhh-HHHHHHHHHHHHhhCCC
Confidence 77766654 45555555555555443
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=9.6e-12 Score=90.88 Aligned_cols=142 Identities=20% Similarity=0.157 Sum_probs=83.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.+..|+++|.+|+|||||++.+....-........+. + .+ .......+.++|+||.- ... ....+.+|++++|
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 4678999999999999999988864211111111111 1 11 11233556799999863 212 1235779999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHHH-HHH-HcCCCEEEEeccC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LRK-LIGAPVYIECSSK 161 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Sa~ 161 (198)
+|++.+..... ..++..+... +.|.+ +|+||+|+.+... ......+.++. +.. .....+++.+||+
T Consensus 111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNK-------TLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHH-------HHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 99986554433 3455555544 67754 5999999964321 00011122222 322 2234479999999
Q ss_pred CCC
Q 029144 162 TQQ 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.-
T Consensus 180 ~~~ 182 (225)
T cd01882 180 VHG 182 (225)
T ss_pred cCC
Confidence 863
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.39 E-value=1.3e-11 Score=95.39 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=97.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC----CC-------------CCCCCC---c-cccce-e-EEEE---ECCeEEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN----TF-------------PTDYVP---T-VFDNF-S-ANVV---VDGSTVNLGLW 59 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~----~~-------------~~~~~~---t-~~~~~-~-~~~~---~~~~~~~l~i~ 59 (198)
.+.|.++|+.++|||||+++|.+. .+ +....+ | +...+ + ..+. .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 588999999999999999999876 22 222223 2 22223 0 1122 24556788899
Q ss_pred eCCCccCcc-------cc----------------------cccccC-CCcEEEEEE-ECC----ChhhHHHHHHHHHHHH
Q 029144 60 DTAGQEDYN-------RL----------------------RPLSYR-GADVFLLAF-SLI----SKASYENVAKKWIPEL 104 (198)
Q Consensus 60 D~~G~~~~~-------~~----------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~~ 104 (198)
||+|-..-. .. ....+. .+++.++|. |.+ .++.+.....+++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999932210 00 122344 788888888 653 1234555567888888
Q ss_pred hhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC--CCCHHHHHHHHHH
Q 029144 105 RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT--QQNVKAVFDAAIK 175 (198)
Q Consensus 105 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~ 175 (198)
... ++|+++++|+.|-..+ ...+...++..+++. +++.+|+.+ .+.+..++..+.-
T Consensus 177 k~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHh
Confidence 888 9999999999994321 233344566667776 566666654 4455555555443
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.38 E-value=4.1e-12 Score=107.23 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=77.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCCC---------CCCccc---cce---eEEE--EECCeEEEEEEEeCCCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------YVPTVF---DNF---SANV--VVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~---------~~~t~~---~~~---~~~~--~~~~~~~~l~i~D~~G~~ 65 (198)
+.-+|+++|+.++|||||+.+++.. .+... +.+... ..+ ...+ .+++..+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4558999999999999999999853 11111 001000 000 0111 224445788899999999
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
.|.......++.+|++++|+|+..+...... ..| ...... +.|.++++||+|+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~-~~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVL-RQALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHH-HHHHHc--CCCeEEEEECchhhc
Confidence 9988778888999999999999876544332 333 333333 578899999999864
No 294
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.38 E-value=1.2e-12 Score=111.65 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=80.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC---------CCCcc---ccce---eEEEEE--------------CCe
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD---------YVPTV---FDNF---SANVVV--------------DGS 52 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~---------~~~t~---~~~~---~~~~~~--------------~~~ 52 (198)
++.-+|+++|+.++|||||+.+++... +... +.+.. +..+ ...+.+ .+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 356699999999999999999998542 1111 00100 0000 011122 123
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
.+.++++||||+.+|.......++.+|++|+|+|+..+-..... ..+..+... ++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~--~~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH--HHHHHHHHC--CCCEEEEEECCccc
Confidence 57788999999999988888888999999999999877554443 333344444 79999999999997
No 295
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.38 E-value=1.8e-11 Score=94.99 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=108.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcc------------ccc-eeEEEEECCeEEEEEEEeCCCccCccccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV------------FDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~------------~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 71 (198)
=+|+++-+..-|||||+..++.. .|.+...-.. +-. ..+...+....+.++|.|||||..|.-..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 48999999999999999999854 2222111110 001 11122223334788899999999999999
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH--
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-- 149 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (198)
.+.++-+|++++++|+..+.--+. ...+...-. .+.+-|+|+||+|.+..+. ..-.++...+...
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARP---------DEVVDEVFDLFVELG 152 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 999999999999999987643222 222222222 2788888999999987542 1223333333333
Q ss_pred -----cCCCEEEEeccCCC----------CCHHHHHHHHHHHHcCCC
Q 029144 150 -----IGAPVYIECSSKTQ----------QNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 150 -----~~~~~~~~~Sa~~~----------~~i~~~~~~i~~~~~~~~ 181 (198)
+.+ |++..|+.+| .++..+|+.|++.+..+.
T Consensus 153 A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 153 ATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 455 6788899877 478999999999987665
No 296
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.36 E-value=1.3e-11 Score=94.27 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH 132 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 132 (198)
.+.+.|.||+|...-... ....+|.++++.+...++..+.. .. ..+ ...-++|+||+|+.+...
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~~~----- 211 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNKTA----- 211 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccchhH-----
Confidence 367789999997532221 45679999999876555555443 21 111 223389999999875321
Q ss_pred CCCccccHHHHHHHHHHc-----CC-CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 133 PGAVPITTAQGEELRKLI-----GA-PVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
......+........ ++ ++++.+||+++.|++++++.+.+.+..
T Consensus 212 ---a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 212 ---ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred ---HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 001112222222211 12 478999999999999999999997643
No 297
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-11 Score=92.02 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=104.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC----CCCCCCCCcccc-ce---eEEEE-------ECCeEEEEEEEeCCCccCc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTVFD-NF---SANVV-------VDGSTVNLGLWDTAGQEDY 67 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~----~~~~~~~~t~~~-~~---~~~~~-------~~~~~~~l~i~D~~G~~~~ 67 (198)
.+..+++.++|+..+|||||.+++..- .++....+++.. .. -..+. ..++..++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 345799999999999999999999753 233332333211 00 11111 2355678899999999664
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccc-cHHHHHHH
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI-TTAQGEEL 146 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~ 146 (198)
-........-.|..++|+|+..+..-+.++-.++..+. -...++|+||.|..++.. +.- ..+.....
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~q--------r~ski~k~~kk~ 151 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQ--------RASKIEKSAKKV 151 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchh--------hhhHHHHHHHHH
Confidence 44333333446889999999877666555222222222 234567778888766532 111 11111222
Q ss_pred HH---H---cCCCEEEEeccCCC----CCHHHHHHHHHHHHcCCCcch
Q 029144 147 RK---L---IGAPVYIECSSKTQ----QNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 147 ~~---~---~~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~~ 184 (198)
.. . .+..|++++||..| +++.++.+.+-..+..+.+..
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 22 1 24358999999999 788888888888887766554
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.34 E-value=5.8e-12 Score=107.46 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=79.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcc------c------cce---eEEEEEC--------CeEEEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV------F------DNF---SANVVVD--------GSTVNLGL 58 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~------~------~~~---~~~~~~~--------~~~~~l~i 58 (198)
++.-+|+++|+.++|||||+++++.. .+......++ . ..+ .....+. +..+.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34559999999999999999999863 2111111100 0 000 0112222 22567889
Q ss_pred EeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
.||||+..|.......++.+|++|+|+|+..+-..... .++..+... +.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 99999999888778888999999999999886554433 333444444 68999999999997
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.34 E-value=2.7e-11 Score=80.14 Aligned_cols=113 Identities=27% Similarity=0.367 Sum_probs=78.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCC-CccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
+||+++|..|+|||+|+.++....+...+. +|.+ +........+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998877755443 3333 2233344567789999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ 164 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (198)
+.++..++... |...+.... .+.|.++++||.|+.+... +..++.. .++++|++++.
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~ 112 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE 112 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence 99999988643 544444433 4688999999999843211 2222221 35677888888
Q ss_pred CHH
Q 029144 165 NVK 167 (198)
Q Consensus 165 ~i~ 167 (198)
|+.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 874
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.34 E-value=3.9e-11 Score=86.69 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCC------------CCCCCccccce-eEEEEECC-------------------
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP------------TDYVPTVFDNF-SANVVVDG------------------- 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~------------~~~~~t~~~~~-~~~~~~~~------------------- 51 (198)
.....|.++|+.|+|||||+++++..... ........... ...+.+.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 34678999999999999999888753110 00000000000 00111110
Q ss_pred -eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144 52 -STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA 130 (198)
Q Consensus 52 -~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 130 (198)
....+.+.|+.|.-... ..+....+..+.|+|+.+.+..... .. ... ..|.++++||+|+.+...
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~---~~~--~~a~iiv~NK~Dl~~~~~--- 165 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YP---GMF--KEADLIVINKADLAEAVG--- 165 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hH---hHH--hhCCEEEEEHHHccccch---
Confidence 12456688888721100 1111234556778888765432111 11 111 467899999999975321
Q ss_pred CCCCCccccHHHHHHHHHHc-CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 131 DHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
.......+..+.. ...+++++||+++.|++++++++.+.
T Consensus 166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1222333333333 22379999999999999999999874
No 301
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=4.3e-11 Score=86.72 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=92.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCC---CccccceeEEEEECCeEEEEEEEeCCCccCcccc-------c----c
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------R----P 72 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~----~ 72 (198)
++|+++|..|+||||++|.+++........ +.+.........+++ ..+.++||||-..-... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876543321 222223333446677 45669999994221110 0 1
Q ss_pred cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccccccccCCCCCcc-cc---HHHHHH
Q 029144 73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFLADHPGAVP-IT---TAQGEE 145 (198)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~---~~~~~~ 145 (198)
....+.+++++|+.+.. -+..+ ...+..+...++ -..++||.|..|...+.. ... +. ...++.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-------~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDS-------LEDYLKKESNEALQE 148 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-------HHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecCc-chHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccccc-------HHHHHhccCchhHhH
Confidence 12356899999999883 22222 233333333331 346888889888765431 000 11 123556
Q ss_pred HHHHcCCCEEEEeccC------CCCCHHHHHHHHHHHHcCCC
Q 029144 146 LRKLIGAPVYIECSSK------TQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 146 ~~~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~~ 181 (198)
+....+. .|+..+.. ....+.+++..+-+.+....
T Consensus 149 li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 149 LIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 6777776 57766666 33567888888877775543
No 302
>PTZ00258 GTP-binding protein; Provisional
Probab=99.31 E-value=1.1e-10 Score=90.84 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=57.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 68 (198)
..++|.++|.||+|||||++++.+... ..++..|+.+.....+.+.+. ..++.++|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 467999999999999999999976543 345666665555444444322 2347899999954321
Q ss_pred c----c---cccccCCCcEEEEEEECC
Q 029144 69 R----L---RPLSYRGADVFLLAFSLI 88 (198)
Q Consensus 69 ~----~---~~~~~~~~~~~i~v~d~~ 88 (198)
+ + .-..++++|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 112357899999999973
No 303
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=1.6e-11 Score=93.49 Aligned_cols=126 Identities=18% Similarity=0.185 Sum_probs=81.7
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHH---HH---HHHHHHhh----hC-CCCCEEEEeecCCc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV---AK---KWIPELRH----YA-PGVPIILVGTKLDL 122 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~---~~---~~~~~~~~----~~-~~~p~iiv~nK~Dl 122 (198)
..+.++|.+||...+..|.+.+.+++++|||++++..+....- .. +-+..+.. .. .+.++++++||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 6677999999999999999999999999999999875432111 01 11222222 11 58999999999999
Q ss_pred ccccccc-------cCCCCCccccHHHHHHHHH--------HcCCC-EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 123 RDDKQFL-------ADHPGAVPITTAQGEELRK--------LIGAP-VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 123 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
..+.... ++..+. -..+++..+.. ...-. -++.++|.+..+|+.+|..+.+.+....
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~--~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGV--NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHhccCchhhhCcCCCCC--CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 8754311 111111 22333332222 11111 2445899999999999999998876544
No 304
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.29 E-value=3.2e-10 Score=81.78 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=108.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-------cccccC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYR 76 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~~ 76 (198)
-.-+|+++|.|.+|||||+..+..... ...|..|+...++..+.+++. .+++.|.||.-.-.+. .-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 356899999999999999988875432 346777888888888889884 4569999995433222 223456
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC----C-------------------------------------------
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYA----P------------------------------------------- 109 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~------------------------------------------- 109 (198)
.+|.+++|+|++..+.-....+.-+....... |
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 79999999999876554433222222222110 1
Q ss_pred -------------------CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144 110 -------------------GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 110 -------------------~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (198)
-++++-|-||+|. ++.++...+++..+. +-+|+....|++.++
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ll 280 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLL 280 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHH
Confidence 1366677777776 788888888888765 347888889999999
Q ss_pred HHHHHHHc
Q 029144 171 DAAIKVVL 178 (198)
Q Consensus 171 ~~i~~~~~ 178 (198)
+.+-+.+.
T Consensus 281 e~iWe~l~ 288 (364)
T KOG1486|consen 281 ERIWEELN 288 (364)
T ss_pred HHHHHHhc
Confidence 99988763
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=1.6e-10 Score=86.83 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=67.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCC---C-------Ccc-ccceeEEEEECCeEEEEEEEeCCCccCc-------
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY---V-------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY------- 67 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~------- 67 (198)
.++|+|+|.+|+|||||++.|++....... . .+. .......+.-++..+.+.++||||-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999986543321 0 011 1111223344678899999999992211
Q ss_pred -----------c-------ccccccc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 68 -----------N-------RLRPLSY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 68 -----------~-------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
. ...+..+ ...|+++|.++.+.. .+....-..+..+.. .+++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls~---~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLSK---RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHTT---TSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhcc---cccEEeEEecccccCH
Confidence 0 0000111 236899999998642 222222344455555 4889999999999654
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.25 E-value=4.2e-11 Score=83.63 Aligned_cols=63 Identities=21% Similarity=0.147 Sum_probs=46.1
Q ss_pred EEEEEeCCCccCc----ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144 55 NLGLWDTAGQEDY----NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (198)
Q Consensus 55 ~l~i~D~~G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (198)
.+.|+|+||.... ...+..++..+|++++|.++++..+-.+. ..+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 3679999996432 24456677999999999999997776665 6666666666 44588999984
No 307
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.24 E-value=8.3e-10 Score=85.13 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=56.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNRL 70 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~~ 70 (198)
++|.++|.|++|||||++++.+... ..++..|+.+.....+.+.+. ...+.+.|+||...-.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999997653 345556665444444444332 135789999996432111
Q ss_pred -------cccccCCCcEEEEEEECC
Q 029144 71 -------RPLSYRGADVFLLAFSLI 88 (198)
Q Consensus 71 -------~~~~~~~~~~~i~v~d~~ 88 (198)
.-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112357899999999984
No 308
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5.1e-11 Score=94.65 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=96.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCCcc---ccce-eEEEEECCeEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVDGSTV 54 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~t~---~~~~-~~~~~~~~~~~ 54 (198)
..++++++|+..+|||||+.+++.. .+.. ...... +..+ .....++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 3578999999999999999887742 1110 000111 0011 12233455567
Q ss_pred EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHH-----HHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL 129 (198)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 129 (198)
.+++.|+||+..|-........++|++++|+|++....-... ..+....++.. .-..++|++||+|+.+=.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq-- 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ-- 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH--
Confidence 888999999999988888888999999999999764322111 11222222222 2456788999999986221
Q ss_pred cCCCCCccccHHHHHHHH-HHcCC----CEEEEeccCCCCCHHHH
Q 029144 130 ADHPGAVPITTAQGEELR-KLIGA----PVYIECSSKTQQNVKAV 169 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~ 169 (198)
.........+..|. ...|+ ..|+++|+..|+|+-..
T Consensus 333 ----~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 ----DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ----HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 00011222233344 33333 25899999999987543
No 309
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.7e-10 Score=89.00 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=81.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHh--hCCCCC--------CCCCcc----------ccc-eeEEEEECCeEEEEEEEeCCCc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYT--SNTFPT--------DYVPTV----------FDN-FSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~--~~~~~~--------~~~~t~----------~~~-~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
.=..+||-+|.+|||||-.+++ ++.+.. ....+. +-. .+..+..+.....+++.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3457899999999999998776 222211 000000 111 1233444555678889999999
Q ss_pred cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
++|....-+.+.-+|.+++|+|+..+-.-+. ..+.+.++.. ++|++-.+||.|....
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrlR--~iPI~TFiNKlDR~~r 148 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRLR--DIPIFTFINKLDREGR 148 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhhc--CCceEEEeeccccccC
Confidence 9999888888889999999999976544433 3666666655 9999999999998643
No 310
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.21 E-value=3.3e-11 Score=95.07 Aligned_cols=161 Identities=26% Similarity=0.373 Sum_probs=124.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.++|+.|+|..++|||+|+.+++.+.+... ....+..+..++.+++....+.+.|-+|... ..+-..+|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 468999999999999999999999988665 4556778888888888888899999888432 2345668999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|.+.+..+++.+ ..+...+..+. ..+|+++++++.-... ...+.+...+..+++.++....||++++.+
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~--------~~~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISA--------KRPRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhc--------ccccccchHHHHHHHHhcCccceeecchhh
Confidence 999999999888 66655555443 4788888887654432 122335666666666666545799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
|.++...|..++.+....
T Consensus 174 Glnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999877655
No 311
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.18 E-value=2.5e-10 Score=90.05 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=80.0
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS----------YENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl 122 (198)
..+.++|.+|+...+..|.+++.+++++|||+++++.+. +.+....|-..+.... .+.|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 456799999999999999999999999999999865332 3333334444444333 68999999999998
Q ss_pred cccccccc--------CCCCCccccHHHHHHHHHH--------cC--C-CEEEEeccCCCCCHHHHHHHHHHH
Q 029144 123 RDDKQFLA--------DHPGAVPITTAQGEELRKL--------IG--A-PVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 123 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------~~--~-~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
........ +..+...-..+.+..+... .. . ..++.++|.+..+++.+|+.+.+.
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 76432111 1111111233444443332 11 1 134569999999999999988765
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.17 E-value=3.2e-10 Score=86.40 Aligned_cols=105 Identities=18% Similarity=0.142 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH 132 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 132 (198)
.+.+.|.||+|..... ......+|.++++.+....+.+... ...+. +.|.++|+||+|+.....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~----~~~l~----~~~~ivv~NK~Dl~~~~~----- 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI----KAGLM----EIADIYVVNKADGEGATN----- 189 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH----HHHHh----hhccEEEEEcccccchhH-----
Confidence 4677899999853211 1245667888888654433333322 22222 578899999999975421
Q ss_pred CCCccccH--HH----HHHHHHH-cCC-CEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 133 PGAVPITT--AQ----GEELRKL-IGA-PVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 133 ~~~~~~~~--~~----~~~~~~~-~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
... .. ...+... .++ ++++.+||+++.|++++++++.+...
T Consensus 190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 100 00 0111111 122 25899999999999999999998654
No 313
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.7e-10 Score=84.08 Aligned_cols=168 Identities=18% Similarity=0.138 Sum_probs=105.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC---CC----------CCCCcccc---c------e--eEEEEEC----CeEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF---PT----------DYVPTVFD---N------F--SANVVVD----GSTVNL 56 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~---~~----------~~~~t~~~---~------~--~~~~~~~----~~~~~l 56 (198)
..++|-++|+..-|||||..++.+--. .+ .|..+... . + ...+... .-.-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 378999999999999999988864211 00 01111100 0 0 0000000 123457
Q ss_pred EEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCc
Q 029144 57 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136 (198)
Q Consensus 57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 136 (198)
.|.|.|||+-.....-....-.|++++|++++.+---... .+-+..+.-. .-..++++-||+|+..... .
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT-~EHl~AleIi-gik~iiIvQNKIDlV~~E~--------A 158 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-REHLMALEII-GIKNIIIVQNKIDLVSRER--------A 158 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCch-HHHHHHHhhh-ccceEEEEecccceecHHH--------H
Confidence 7999999987766655555557999999999764222222 1222222221 1357889999999976432 1
Q ss_pred cccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 137 PITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 137 ~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
..+++++++|.... +. +++++||..+.|++-+++.|.+.+..+...
T Consensus 159 lE~y~qIk~FvkGt~Ae~a-PIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 159 LENYEQIKEFVKGTVAENA-PIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHHHHHHHhcccccCCC-ceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 13555666666643 44 799999999999999999999988766554
No 314
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.1e-10 Score=86.61 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc---ccceeEEE-EECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANV-VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~---~~~~~~~~-~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
-|+..|+-.-|||||+..+.+..-.. .+-. +......+ ..+.....+.|+|.||++++-+.....+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 47888999999999999888653211 1111 11111111 122333578899999999998888788888999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH--cCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL--IGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~ 161 (198)
|++++++-..+.. +.+..+... .-...++|+||+|+.++.. ......+.... +...++|.+|+.
T Consensus 80 vV~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 80 VVAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred EEeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHH-----------HHHHHHHHHhhcccccccccccccc
Confidence 9999765444433 333444443 1334589999999986431 11122222222 334468999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 029144 162 TQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~ 178 (198)
+|+||+++.+.|.+...
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999999885
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.8e-10 Score=92.94 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=84.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCC---------CCcccccee---------EEEE---ECCeEEEEEEEeC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY---------VPTVFDNFS---------ANVV---VDGSTVNLGLWDT 61 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~---------~~t~~~~~~---------~~~~---~~~~~~~l~i~D~ 61 (198)
+.+..+|.++|+-+.|||+|+.-+.....++-. ..+...... .++. .+++.+.+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 346779999999999999999888765443321 111111111 1111 2467789999999
Q ss_pred CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
|||-.|.......++.+|++++|+|+..+-.+... ..+...++. +.|+++|+||.|+.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---cCcEEEEEehhHHH
Confidence 99999999999999999999999999888777654 222223332 79999999999975
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.2e-10 Score=93.47 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC--CCCC---CCCC-----ccc------cce---eEEEEECCeEEEEEEEeCCC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT---DYVP-----TVF------DNF---SANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~---~~~~-----t~~------~~~---~~~~~~~~~~~~l~i~D~~G 63 (198)
..+.-+|.++|+-++|||||..+++.. .+.. .... +.. -.+ ...+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 346679999999999999999988742 2211 1100 000 001 11233443 47788999999
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
|-+|.....+.++-+|++++|+|+..+-..+.. .-|. +...+ +.|.++++||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~r-qa~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWR-QADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHH-HHhhc--CCCeEEEEECcccccc
Confidence 999999999999999999999999887665554 3444 44444 7999999999998754
No 317
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.11 E-value=1.5e-09 Score=81.04 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=54.1
Q ss_pred EEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCccc---
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR--- 69 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~--- 69 (198)
|.++|.|++|||||++++.+... ..++..++.+.....+.+.+. ...+.++|+||...-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998654 345556665555444444432 23588999999543211
Q ss_pred -ccc---cccCCCcEEEEEEECC
Q 029144 70 -LRP---LSYRGADVFLLAFSLI 88 (198)
Q Consensus 70 -~~~---~~~~~~~~~i~v~d~~ 88 (198)
+.. ..++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111 2256799999999863
No 318
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.3e-09 Score=82.83 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=107.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCC------------------CCCcc-----c-cceeEEEEE----------CC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD------------------YVPTV-----F-DNFSANVVV----------DG 51 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~------------------~~~t~-----~-~~~~~~~~~----------~~ 51 (198)
.++++++|.-.+|||||+--+..+..... ..+.. + +.....+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 67999999999999999976665433210 00000 0 000111111 12
Q ss_pred eEEEEEEEeCCCccCcccccccccCC--CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRG--ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL 129 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 129 (198)
....++|+|.+|+..|.....+.+.. .|..++|+++...-.+.. .+-+..+... ++|++++.+|+|+.+.....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 23557799999999999887777765 688999999877655443 4555666666 89999999999998763310
Q ss_pred ---------cC-----CCCCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 130 ---------AD-----HPGAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 130 ---------~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.. ....+.-+.+++...+++. +..|+|.+|+.+|+|++- +..+...+..
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~Lsp 388 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCLSP 388 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhcCC
Confidence 11 1222223455665555553 556899999999999874 3444444433
No 319
>PRK00098 GTPase RsgA; Reviewed
Probab=99.10 E-value=6.7e-10 Score=84.47 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=65.9
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
+.++|.+++|+|+.+++.......+|+..+... ++|+++|+||+|+.+.. .............+. +
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-~ 143 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-D 143 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-e
Confidence 489999999999998876655557777776654 89999999999996322 112233444556676 7
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 029144 155 YIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
++++||+++.|+++++..+..
T Consensus 144 v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred EEEEeCCCCccHHHHHhhccC
Confidence 899999999999999987743
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.07 E-value=4.1e-10 Score=77.74 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=64.4
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
+.+.++.++++|++++|+|++++....+. .+...+... +.|+++|+||+|+.+... . .....+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEV----------L--EKWKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHH----------H--HHHHHHH
Confidence 34556777889999999999876543321 233333332 789999999999954321 1 1111233
Q ss_pred HHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 148 KLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
...+. +++.+||+++.|++++++.+.+.+.
T Consensus 67 ~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 67 ESEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred HhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 33444 6899999999999999999998775
No 321
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.06 E-value=6.3e-10 Score=79.33 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=65.4
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
+...+..+++++|++++|+|++++..... ..+.....+.|+++|+||+|+.+.. ...+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 56777788999999999999987642211 1122222478999999999996532 222223333
Q ss_pred H-----HHcC--CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 147 R-----KLIG--APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 147 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
. ...+ ...++.+||+++.|+++++..+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 2222 225899999999999999999998764
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.06 E-value=2.1e-09 Score=78.76 Aligned_cols=69 Identities=25% Similarity=0.179 Sum_probs=46.7
Q ss_pred EEEEEEeCCCccCc-------------ccccccccCC-CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029144 54 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (198)
Q Consensus 54 ~~l~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (198)
..+.++|+||-... ..+...++++ .+++++|+|++....-.+. ..+...+... +.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 56789999997421 1233445664 4589999998764443333 3555555555 8999999999
Q ss_pred CCcccc
Q 029144 120 LDLRDD 125 (198)
Q Consensus 120 ~Dl~~~ 125 (198)
+|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 999764
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.2e-08 Score=77.96 Aligned_cols=83 Identities=19% Similarity=0.130 Sum_probs=56.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC----------------CeEEEEEEEeCCCccCc-
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD----------------GSTVNLGLWDTAGQEDY- 67 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~----------------~~~~~l~i~D~~G~~~~- 67 (198)
.+++.++|.||+|||||++++..... ..+|..++.+.......+. -....+.|+|.+|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997764 2566666643332222211 13467889999994322
Q ss_pred ---ccccc---cccCCCcEEEEEEECC
Q 029144 68 ---NRLRP---LSYRGADVFLLAFSLI 88 (198)
Q Consensus 68 ---~~~~~---~~~~~~~~~i~v~d~~ 88 (198)
.-+-. .-++++|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22222 3357899999999875
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.05 E-value=2.1e-09 Score=74.85 Aligned_cols=78 Identities=13% Similarity=-0.018 Sum_probs=54.0
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCEEE
Q 029144 80 VFLLAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPVYI 156 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (198)
.-|+|+|++.++.... +-.| -..=++|+||.|+.+.-. .+.+...+-+++. +..+++
T Consensus 120 ~~v~VidvteGe~~P~----------K~gP~i~~aDllVInK~DLa~~v~----------~dlevm~~da~~~np~~~ii 179 (202)
T COG0378 120 LRVVVIDVTEGEDIPR----------KGGPGIFKADLLVINKTDLAPYVG----------ADLEVMARDAKEVNPEAPII 179 (202)
T ss_pred eEEEEEECCCCCCCcc----------cCCCceeEeeEEEEehHHhHHHhC----------ccHHHHHHHHHHhCCCCCEE
Confidence 7889999876653221 1011 013378999999988654 5556665555553 334799
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
++|+++|+|+++++.++...+
T Consensus 180 ~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 180 FTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEeCCCCcCHHHHHHHHHhhc
Confidence 999999999999999987654
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.03 E-value=2.3e-09 Score=80.19 Aligned_cols=57 Identities=9% Similarity=-0.021 Sum_probs=40.3
Q ss_pred CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-cCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 110 GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-IGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 110 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
..+-++|+||+|+.+... ...+...+..+. ....+++++||++|+|+++++++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466799999999975321 233333333333 334479999999999999999999764
No 326
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.03 E-value=7.8e-09 Score=78.29 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=66.4
Q ss_pred ccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 72 PLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
...+.++|.+++|+|+.++. ++..+ ..|+..+... ++|+++|+||+|+.++. ............
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~ 137 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALAL 137 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhC
Confidence 33478999999999999887 77766 6677776655 89999999999996531 111223333446
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 151 GAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
+. +++.+||+++.|+++++..+..
T Consensus 138 g~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 138 GY-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-eEEEEECCCCccHHHHHhhhcc
Confidence 66 7899999999999999887764
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.02 E-value=3.3e-09 Score=86.63 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=73.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCC--CCCccccceeEEEEECCeEEEEEEEeCCCccCccc------c----cc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------L----RP 72 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~----~~ 72 (198)
..++|+++|.+|+||||++|.+++...... ..+.+..........++ ..+.++||||...... . ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 357899999999999999999998753221 11222222222233455 4577999999654321 0 11
Q ss_pred cccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccc
Q 029144 73 LSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK 126 (198)
Q Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~ 126 (198)
.++. .+|++|+|..++........ ..++..+...+. -..+|||.|+.|..+++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppd 252 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPPD 252 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCCC
Confidence 1222 47999999887533322111 345556655552 45789999999998643
No 328
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.02 E-value=7.1e-10 Score=81.02 Aligned_cols=167 Identities=17% Similarity=0.063 Sum_probs=93.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCC-ccccceeEEEEECCeEEEEEEEeCCCc----------cCcccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP 72 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~ 72 (198)
.+...++++|.+++|||||++-++.......... ..+........--+ -.+.+.|.||- ..+..+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~--~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG--KSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc--ceEEEEecCCcccccCCccCcchHhHhHH
Confidence 4568999999999999999998886543222222 22222211111112 34559999992 12223333
Q ss_pred cccCCCc---EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCc-cccHHHHHHHHH
Q 029144 73 LSYRGAD---VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV-PITTAQGEELRK 148 (198)
Q Consensus 73 ~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (198)
.++.+.+ -+++.+|++-+-.-.+ ...++.+.+. +.|+.+|.||||.........+..... .......-+...
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D--~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTD--NPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCC--hHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 4443332 4556667654432222 2444566666 899999999999876533211111111 011111111111
Q ss_pred HcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 149 LIGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
... ++++.+|+.++.|+++++-.+.+..
T Consensus 288 ~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 288 LVD-LPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ecc-CCceeeecccccCceeeeeehhhhh
Confidence 122 2567799999999999998887653
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=99.01 E-value=3.2e-09 Score=82.11 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=67.7
Q ss_pred cccccccccCCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
-..+....+.++|.+++|+|+.++.. ...+ ..|+...... ++|+++|+||+|+.+... ......
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~~--~ip~ILVlNK~DLv~~~~------------~~~~~~ 143 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAEST--GLEIVLCLNKADLVSPTE------------QQQWQD 143 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEEchhcCChHH------------HHHHHH
Confidence 34455566889999999999988763 3344 6666655443 899999999999964321 122223
Q ss_pred HHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
.....+. .++.+||.++.|+++++..+...
T Consensus 144 ~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 144 RLQQWGY-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHhcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence 3345677 68999999999999999888653
No 330
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5.9e-09 Score=76.93 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=100.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC---CC---CCCC-----CCcc---ccce---eEEEEECCeEEEEEEEeCCCccCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN---TF---PTDY-----VPTV---FDNF---SANVVVDGSTVNLGLWDTAGQEDY 67 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~---~~---~~~~-----~~t~---~~~~---~~~~~~~~~~~~l~i~D~~G~~~~ 67 (198)
..++|..+|+-+-|||||..++..- .. ...| .|.. +-.+ ...+...+.. +...|+||+.+|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHH
Confidence 4689999999999999999666421 10 0000 1111 1111 1223334444 459999999998
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (198)
-........+.|+.|+|+++.+..--+.. +.. .+.+.. +.|. ++++||+|+.++.. ...+-..+.+++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi--Llarqv-Gvp~ivvflnK~Dmvdd~e-------llelVemEvreL 157 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHI--LLARQV-GVPYIVVFLNKVDMVDDEE-------LLELVEMEVREL 157 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh--hhhhhc-CCcEEEEEEecccccCcHH-------HHHHHHHHHHHH
Confidence 87766677789999999999986544333 111 112221 5554 56779999987532 112344567788
Q ss_pred HHHcCCC----EEEEeccCC-CC-------CHHHHHHHHHHHHcCCCcc
Q 029144 147 RKLIGAP----VYIECSSKT-QQ-------NVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 147 ~~~~~~~----~~~~~Sa~~-~~-------~i~~~~~~i~~~~~~~~~~ 183 (198)
...++++ |++.-||+. .+ .|.++++.+-..+..+.+.
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred HHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 8888774 466666664 22 3566666666666555443
No 331
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.94 E-value=1.3e-08 Score=75.50 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=65.7
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH 132 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 132 (198)
.+.+.|++|.|.-..... ...-+|.+++|.-..-++..+.+ +.=+- .+.=++|+||.|......
T Consensus 143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~i-K~Gim-------EiaDi~vINKaD~~~A~~----- 206 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGI-KAGIM-------EIADIIVINKADRKGAEK----- 206 (323)
T ss_pred CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHH-Hhhhh-------hhhheeeEeccChhhHHH-----
Confidence 355678888885332221 23447999998877777766665 32222 233478899999765421
Q ss_pred CCCccccHHHHH---HHH----HHcCC-CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 133 PGAVPITTAQGE---ELR----KLIGA-PVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 133 ~~~~~~~~~~~~---~~~----~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
...+.. .+. ...++ ++++.+||..|+|++++++.+.+....
T Consensus 207 ------a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 207 ------AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ------HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 111111 111 11122 468999999999999999999987643
No 332
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.92 E-value=2.7e-09 Score=81.35 Aligned_cols=172 Identities=17% Similarity=0.149 Sum_probs=101.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc--------------ccce---------eEEEEE-----------
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNF---------SANVVV----------- 49 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~--------------~~~~---------~~~~~~----------- 49 (198)
+..+.|.+.|+-+.|||||+-.+..+...+..-.+- ...+ .+.+..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 456789999999999999997776554432110000 0000 000111
Q ss_pred --CCeEEEEEEEeCCCccCcccccccc--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 50 --DGSTVNLGLWDTAGQEDYNRLRPLS--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 50 --~~~~~~l~i~D~~G~~~~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
....-.+.|.|+.|++.|.+..... -.+.|..++++.+++..+... ++-+...... ..|++++.+|+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a~--~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALAM--ELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhhh--cCCEEEEEEecccCcH
Confidence 1122456799999999997655443 367999999999998766543 3444444444 8999999999999876
Q ss_pred cccc---------cCCCC--Cccc-cHHHH--HHHHHH--cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 126 KQFL---------ADHPG--AVPI-TTAQG--EELRKL--IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 126 ~~~~---------~~~~~--~~~~-~~~~~--~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.... .+.-+ ...+ +.+.. ...+.+ .+..|+|.+|+.+|+|++ ++..+...+...
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~r 340 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcc
Confidence 4411 00000 0000 11111 111222 234589999999999987 444444444443
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.91 E-value=2.2e-08 Score=76.12 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=71.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----------CCccc-cceeEEEEECCeEEEEEEEeCCCccCcc---cc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN---RL 70 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~---~~ 70 (198)
..+.|+++|+.|.|||||+|.|++....... .++.. ......+.-++....+++.||||-..+- ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4689999999999999999999987443321 11111 1112223346778999999999922210 00
Q ss_pred c----------------------cc-cc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 71 R----------------------PL-SY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 71 ~----------------------~~-~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
| +. .+ ..+|+++|.+..+. .++..+.-+.+..+.. .+.+|=|+.|+|..-.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK---RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc---ccCeeeeeeccccCCH
Confidence 0 11 11 13678888887643 3344443344455554 4677777789998654
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=1.4e-08 Score=78.58 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=66.2
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
..|+|.+++|++.+...++..+ ..|+...... ++|.++|+||+|+.+... ..............+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~~--~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACETL--GIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 4679999999999887788777 7787666544 799999999999965321 0111222333445676 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHH
Q 029144 155 YIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
++++||+++.|+++++..+...
T Consensus 185 v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhhC
Confidence 9999999999999999988764
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.90 E-value=2.3e-09 Score=78.18 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=60.9
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+.+.|++|.|.-.... ....-+|.+++|....-.+..+.+ +.-+-. ++=++|+||+|......
T Consensus 122 ~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~-KaGimE-------iaDi~vVNKaD~~gA~~------ 184 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAI-KAGIME-------IADIFVVNKADRPGADR------ 184 (266)
T ss_dssp -SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB--TTHHH-------H-SEEEEE--SHHHHHH------
T ss_pred CCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHH-hhhhhh-------hccEEEEeCCChHHHHH------
Confidence 5566888887432211 123458999999988776665544 221112 23488899999765432
Q ss_pred CCccccHHHHHHHHHHc-----C-CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 134 GAVPITTAQGEELRKLI-----G-APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
...+.+...... + .++++.+||.++.|++++++.|.+...
T Consensus 185 -----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 185 -----TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 222333222211 1 257999999999999999999988553
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=1.5e-08 Score=70.08 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=59.4
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.+.++|++++|+|+.++..... ..+...+.....+.|+++|+||+|+.++.. .......+...+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 4678999999999998743221 233344443334689999999999964321 11222233322322
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
..+.+||+++.|++++++.+.+.+
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 357799999999999999998764
No 337
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.86 E-value=7.7e-09 Score=80.68 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=68.3
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG 143 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (198)
.+.|..+...+.+.++++++|+|+.+... .|...+.....+.|+++|+||+|+.+.. ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 44677777777889999999999976542 2333333333478999999999997532 223333
Q ss_pred H----HHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHH
Q 029144 144 E----ELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 144 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
. +++...+.. .++.+||+++.|+++++..+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 345556652 48899999999999999999764
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.4e-08 Score=68.85 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=35.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
+++++|.+|+|||||+|++....................+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999876532111111122223344443 3579999995
No 339
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.4e-07 Score=72.27 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=70.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCC--C--CCcc------ccceeEEEEECCeEEEEEEEeCCCccCc--------
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--Y--VPTV------FDNFSANVVVDGSTVNLGLWDTAGQEDY-------- 67 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~--~--~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------- 67 (198)
.|.++++|++|.|||||+|.|+...+..+ + .+.. .......+.-++..+.|++.||||-.+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 58999999999999999999987644332 0 0000 1111222333678899999999992211
Q ss_pred -----------------ccccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 68 -----------------NRLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 68 -----------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
....+..+. .+++++|.+..+. ..+..+.-.+...+.. .+++|-|+-|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~---~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK---KVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc---cccccceeeccccCCH
Confidence 011111222 4678888888653 2333332344444444 4677777789998654
No 340
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2e-08 Score=76.39 Aligned_cols=117 Identities=23% Similarity=0.207 Sum_probs=75.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCC---CCCccccceeEEEE-------------EC--------------------
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVV-------------VD-------------------- 50 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~---~~~t~~~~~~~~~~-------------~~-------------------- 50 (198)
--|+++|.-..||||+++-++.+.++.- ..||+. .|...+. ++
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 4689999999999999999998877642 223322 1211111 11
Q ss_pred ------CeEEEEEEEeCCCccC-----------cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE
Q 029144 51 ------GSTVNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI 113 (198)
Q Consensus 51 ------~~~~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 113 (198)
...-.+.++||||.-. |......+...+|.++++||+..-+--.+. .+.+..++.+ .-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 0123467999999322 223345667789999999998654433333 4555566655 4556
Q ss_pred EEEeecCCcccccc
Q 029144 114 ILVGTKLDLRDDKQ 127 (198)
Q Consensus 114 iiv~nK~Dl~~~~~ 127 (198)
-||+||.|..+.++
T Consensus 215 RVVLNKADqVdtqq 228 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQ 228 (532)
T ss_pred EEEeccccccCHHH
Confidence 67789999987654
No 341
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.80 E-value=3.4e-08 Score=75.42 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=92.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCC------------------CCCCccccce--------------------eEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT------------------DYVPTVFDNF--------------------SANV 47 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~------------------~~~~t~~~~~--------------------~~~~ 47 (198)
+++|+++|...+|||||+-.+.++.... ...+..+..+ ....
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 6799999999999999996555443321 0011111111 1111
Q ss_pred EECCeEEEEEEEeCCCccCccccccccc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 48 VVDGSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
...+....++|+|.+|++.|....-... +-.|..++++-++-.- ..+.++.+...-.. ..|+.+|.+|+|..+.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALaL--~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALAL--HVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eeccHHhhhhhhhh--cCcEEEEEEeeccCcH
Confidence 1123345678999999999987654433 3478888888765321 11213333332333 7999999999999886
Q ss_pred ccc---------ccCCCCCcccc-----HHH----HHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 126 KQF---------LADHPGAVPIT-----TAQ----GEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 126 ~~~---------~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+.. ..++...+.++ .++ +..|..+.- +++|.+|-.+|.|++ ++..+...+
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~-CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERV-CPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccc-cceEEeccccCCChH-HHHHHHhhc
Confidence 430 01121111111 111 112222222 378999999999986 344444443
No 342
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.79 E-value=5.2e-08 Score=70.81 Aligned_cols=151 Identities=18% Similarity=0.196 Sum_probs=97.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-------cccccccCCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-------RLRPLSYRGA 78 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 78 (198)
-+|-++|.|.+||||++..+..... ...|..|+-..++....+++ ..+++.|.||.-+-. .......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3789999999999999988876532 34455666555565555666 667799999953322 1222345678
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhh---------------------------------------------------
Q 029144 79 DVFLLAFSLISKASYENVAKKWIPELRHY--------------------------------------------------- 107 (198)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------------------------- 107 (198)
+.+++|+|+..|-+...+.+.-++-+...
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999877644443322111111100
Q ss_pred -----------CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 108 -----------APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 108 -----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
..-+|.+.+.||+|... .++ +--.+..+..+.+||..+.|+++++..+-+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS---------------iEE---Ldii~~iphavpISA~~~wn~d~lL~~mwey 279 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS---------------IEE---LDIIYTIPHAVPISAHTGWNFDKLLEKMWEY 279 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceee---------------eec---cceeeeccceeecccccccchHHHHHHHhhc
Confidence 01247777778887743 222 1223344567889999999999999988876
Q ss_pred H
Q 029144 177 V 177 (198)
Q Consensus 177 ~ 177 (198)
+
T Consensus 280 L 280 (358)
T KOG1487|consen 280 L 280 (358)
T ss_pred c
Confidence 5
No 343
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=7.6e-08 Score=69.22 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=68.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCC---------CCCCccc-cceeEEEEECCeEEEEEEEeCCCccCc---c---
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT---------DYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY---N--- 68 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~---------~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~---~--- 68 (198)
-.|+|+|+|.+|.|||||++.++...... ++..|+. ......+.-++...+++++||||-.++ .
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 46899999999999999999887543322 1122221 112333444678899999999992221 1
Q ss_pred --------------------cccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 69 --------------------RLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 69 --------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
..+...+. .++++++.+..+ +.++..+.-+++..+... ..++-|+-|.|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~v---vNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTEV---VNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence 11122232 256777777654 444544434555555543 5566666788873
No 344
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.76 E-value=3.8e-08 Score=67.84 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=54.9
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 79 DVFLLAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
|++++|+|+.++.+.... .+. ..+.. .+.|+++|+||+|+.+... .......+....+ ..++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence 689999999887655432 222 22332 3799999999999954321 1111112222233 36788
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 029144 158 CSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+||+++.|++++++.+.+..
T Consensus 65 vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EeccCCcChhhHHHHHHHHh
Confidence 99999999999999987764
No 345
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.67 E-value=2.1e-08 Score=75.04 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=88.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCcc---------Cccccccccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLSY 75 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 75 (198)
.--|.++|..|+|||||++++..-.+.. +.-..+.+.........+. -.+.+.||-|-- .|.+.. .-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL-eeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL-EEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence 3468999999999999999998544322 1111112222222222222 234488988831 122211 124
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVP----IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
..+|+++-|.|+++|.--... ...+..+.... +..| ++=|-||.|..+... . ...+
T Consensus 256 aeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e------~E~n 316 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------E------EEKN 316 (410)
T ss_pred hhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC------------c------cccC
Confidence 578999999999998765554 44455555442 2233 344557777754321 1 1122
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 151 GAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+ -+.+||++|+|++++++.+-.++..
T Consensus 317 ~---~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 317 L---DVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred C---ccccccccCccHHHHHHHHHHHhhh
Confidence 2 3568999999999999888776543
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=1e-07 Score=66.84 Aligned_cols=88 Identities=23% Similarity=0.143 Sum_probs=59.5
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
...+.++|++++|+|++++...... .+...+ .+.|+++|+||+|+.+... .....++....+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~ 75 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------TKKWLKYFESKG 75 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------HHHHHHHHHhcC
Confidence 4567889999999999876543222 222222 3679999999999964321 111212222333
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
. .++.+||+++.|++++...+.+.+.
T Consensus 76 ~-~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 E-KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 3 6789999999999999999988763
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.65 E-value=9.5e-08 Score=65.99 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=34.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (198)
+.++|+++|.+|+|||||+|++.+.... .....++.. ...+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 4678999999999999999999875432 222222221 11112222 255999998
No 348
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.65 E-value=9.6e-08 Score=66.85 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=36.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
..++++++|.+|+|||||+|++.+.... ....+++.. ...+.++. .+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcCC
Confidence 3579999999999999999999976432 222222221 11222322 4669999983
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.63 E-value=1.3e-07 Score=64.16 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=51.1
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.+..+|++++|+|+.++.+... ..+...+.....+.|+++|+||+|+.++. ............+.
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~- 72 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI- 72 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC-
Confidence 4678999999999988766442 12333333222578999999999996432 12233444555555
Q ss_pred EEEEeccCCCCC
Q 029144 154 VYIECSSKTQQN 165 (198)
Q Consensus 154 ~~~~~Sa~~~~~ 165 (198)
.++.+||.++.+
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 688999998753
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.9e-07 Score=72.61 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=73.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCcccc-----------------------------------------
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFD----------------------------------------- 41 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~----------------------------------------- 41 (198)
+...||++.|..++||||++|+++...+.+. .-+++..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4568999999999999999999987644221 1111100
Q ss_pred --ceeEEEEECCe-----EEEEEEEeCCCccC---cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC
Q 029144 42 --NFSANVVVDGS-----TVNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV 111 (198)
Q Consensus 42 --~~~~~~~~~~~-----~~~l~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (198)
.....+.++.. .-.+.+.|.||.+. ..+....+..++|++|+|.++.+-.+..+. .++...... +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CC
Confidence 00001111111 01356889999643 344445566789999999999887665544 444444444 55
Q ss_pred CEEEEeecCCccccc
Q 029144 112 PIILVGTKLDLRDDK 126 (198)
Q Consensus 112 p~iiv~nK~Dl~~~~ 126 (198)
.++|+.||.|...+.
T Consensus 263 niFIlnnkwDasase 277 (749)
T KOG0448|consen 263 NIFILNNKWDASASE 277 (749)
T ss_pred cEEEEechhhhhccc
Confidence 666777899997654
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=1.5e-07 Score=65.93 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=36.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~ 64 (198)
..++++++|.+|+|||||++++....+... .+..+... ...+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999998765321 11111111 2223333 24679999994
No 352
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.57 E-value=3.7e-06 Score=65.62 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=94.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-----------------CCCC----CCCccccce----eEEEEE-CCeEEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT-----------------FPTD----YVPTVFDNF----SANVVV-DGSTVNLGLW 59 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~-----------------~~~~----~~~t~~~~~----~~~~~~-~~~~~~l~i~ 59 (198)
.+=|.|||+..+|||||++||...- .++. ..-|+...| ...+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 3558899999999999999997421 1111 122223333 223344 4677899999
Q ss_pred eCCCc-------------cCccc-cc---------------ccccCC-Cc-EEEEEEECC----ChhhHHHHHHHHHHHH
Q 029144 60 DTAGQ-------------EDYNR-LR---------------PLSYRG-AD-VFLLAFSLI----SKASYENVAKKWIPEL 104 (198)
Q Consensus 60 D~~G~-------------~~~~~-~~---------------~~~~~~-~~-~~i~v~d~~----~~~s~~~~~~~~~~~~ 104 (198)
|+.|- +++-. =| +..++. +. ++++.-|-+ .++.+..+.++....+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99981 11100 00 111111 22 334433432 2567777778888888
Q ss_pred hhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC--CCCHHHHHHHHH
Q 029144 105 RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT--QQNVKAVFDAAI 174 (198)
Q Consensus 105 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 174 (198)
... ++|+++++|-.+-..+ ...+.+.++..+|+. +++.+++.+ .+.+..++..+.
T Consensus 177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHH
Confidence 888 9999999998866443 455667788888988 677777664 345555554443
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.55 E-value=2.7e-07 Score=69.64 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=36.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
+.++++++|.+|+|||||+|++.+..... ....++.. ...+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 46899999999999999999999765322 22222221 22233332 3579999997
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=3e-07 Score=63.36 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=36.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (198)
...+++++|.+++||||+++++.+... ..+.++.+......+..-+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence 457899999999999999999996543 2233343333222222112 1467999998
No 355
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.54 E-value=5.3e-07 Score=69.89 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=57.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~ 69 (198)
+++.++|.|++|||||++.+..... ..+|..++.......+.+.+. ...+.+.|.||...-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987754 345666655444444444432 24578999999643221
Q ss_pred -------ccccccCCCcEEEEEEECC
Q 029144 70 -------LRPLSYRGADVFLLAFSLI 88 (198)
Q Consensus 70 -------~~~~~~~~~~~~i~v~d~~ 88 (198)
..-..++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1122467899999999974
No 356
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=5.5e-07 Score=67.94 Aligned_cols=89 Identities=21% Similarity=0.134 Sum_probs=60.9
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
...+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+.. .. ....+.....+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~-----------~~-~~~~~~~~~~~ 77 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA-----------VT-KQWLKYFEEKG 77 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH-----------HH-HHHHHHHHHcC
Confidence 4567889999999999877554332 222222 268999999999995432 11 11122223334
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
. .++.+||+++.|++++.+.+.+.+..
T Consensus 78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 78 I-KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4 67889999999999999999887744
No 357
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.4e-06 Score=70.07 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=75.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
.++=++|+|++|+|||||++.+...-.. .|..+.......+.++.-.++|.++|.. ..++. ....-+|++++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEEE
Confidence 5778889999999999999888754211 1111111222335677788999999932 22222 233458999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccccc
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 126 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~ 126 (198)
+|.+-+-..+.+ +++..+..+ +.|- +-|+++.|+....
T Consensus 141 IdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 141 IDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred eccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence 999887666665 677777777 6665 4678999997653
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=5.3e-07 Score=68.39 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=36.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
..++++++|.+|+|||||+|++.+..... ....++.. ...+.++. .+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence 46899999999999999999999865422 22222211 12223332 3569999997
No 359
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=6.6e-07 Score=72.19 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=77.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-----CCCC-CCCccccce----eEEEE-------ECCeEEEEEEEeCCCccCcc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT-----FPTD-YVPTVFDNF----SANVV-------VDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~-----~~~~-~~~t~~~~~----~~~~~-------~~~~~~~l~i~D~~G~~~~~ 68 (198)
.=+|-+.-+-.+||||+-++.+... +.+. ...++.+.. .+.++ .....+.++++|||||-.|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 3467778888999999998876321 1110 001111111 11111 11235788899999999999
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
-...+.++-.|++++|+++..+-.-+.. .-|. +..++ +.|.+..+||+|....
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~r-Q~~ry--~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTE-TVWR-QMKRY--NVPRICFINKMDRMGA 171 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhH-HHHH-HHHhc--CCCeEEEEehhhhcCC
Confidence 9999999999999999998776555444 3443 44555 8999999999998754
No 360
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4.8e-07 Score=74.59 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=77.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcc------ccceeEEEE-------ECCeEEEEEEEeCCCccCc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV------FDNFSANVV-------VDGSTVNLGLWDTAGQEDY 67 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~------~~~~~~~~~-------~~~~~~~l~i~D~~G~~~~ 67 (198)
.+..-+|+++-+-.-|||||...++.. .+.....+.. .+...+.++ +--+.+.++++|+|||-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 445668999999999999999888743 2222111111 111111111 2124578889999999999
Q ss_pred ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144 68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (198)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 122 (198)
.+......+-+|++++.+|+..+-.-+.. .++.+... .+...++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhhh
Confidence 99999999999999999999765444333 22222222 26778899999994
No 361
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.6e-06 Score=65.61 Aligned_cols=147 Identities=19% Similarity=0.162 Sum_probs=88.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh---C-C------CCC-CCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS---N-T------FPT-DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~---~-~------~~~-~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (198)
..++|--+|+..-|||||--++.. . . +.+ +..|.. +-.+ ...+.+....-...=.|+|||.+|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 457899999999999999866542 1 1 100 000111 1111 12223322223334789999999987
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
.......+.|+.|+|+.++|..--+.- +.+ .+.+...-..+++.+||.|+.++.+ ...+..-+.+++...
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTr-EHl--LLArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RElLse 202 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTR-EHL--LLARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRELLSE 202 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchH-HHH--HHHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHHHHHH
Confidence 777777889999999999997544332 222 2222223456788889999986532 222344456777777
Q ss_pred cCCC----EEEEeccC
Q 029144 150 IGAP----VYIECSSK 161 (198)
Q Consensus 150 ~~~~----~~~~~Sa~ 161 (198)
+++. |++.-||+
T Consensus 203 ~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSAL 218 (449)
T ss_pred cCCCCCCCCeeecchh
Confidence 7653 56665544
No 362
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=1.5e-06 Score=68.02 Aligned_cols=84 Identities=20% Similarity=0.374 Sum_probs=57.4
Q ss_pred CCCc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH----HHHHHHc
Q 029144 76 RGAD-VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG----EELRKLI 150 (198)
Q Consensus 76 ~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 150 (198)
...+ .+++|+|+.+.. ..|...+.....+.|+++|+||+|+.+.. ...+.. ..++...
T Consensus 67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence 3444 899999997743 22333444444478999999999996532 222333 3334455
Q ss_pred CCC--EEEEeccCCCCCHHHHHHHHHHH
Q 029144 151 GAP--VYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 151 ~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
+.. .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 542 47899999999999999999775
No 363
>PRK01889 GTPase RsgA; Reviewed
Probab=98.42 E-value=1.9e-06 Score=67.28 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=59.3
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
..|+|.+++|+++..+-....+ ..++..+... ++|.++|+||+||.++.. ...+....+ ..+. +
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~----------~~~~~~~~~--~~g~-~ 173 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAE----------EKIAEVEAL--APGV-P 173 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHH----------HHHHHHHHh--CCCC-c
Confidence 5789999999999644444344 6777777666 888899999999965311 011122222 3354 6
Q ss_pred EEEeccCCCCCHHHHHHHHH
Q 029144 155 YIECSSKTQQNVKAVFDAAI 174 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~ 174 (198)
++.+|++++.|++++..++.
T Consensus 174 Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 174 VLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred EEEEECCCCccHHHHHHHhh
Confidence 88999999999999988874
No 364
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=9.3e-07 Score=67.08 Aligned_cols=89 Identities=24% Similarity=0.187 Sum_probs=60.8
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
...+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+.. . .+....+....+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~-----------~-~~~~~~~~~~~~ 80 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE-----------V-TKKWIEYFEEQG 80 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH-----------H-HHHHHHHHHHcC
Confidence 4567889999999999877554322 222222 268999999999995421 1 112222223334
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
. +++.+||.++.|++++++.+.+.+..
T Consensus 81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 81 I-KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4 67889999999999999998887643
No 365
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.42 E-value=5e-07 Score=64.38 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
...++++|.+|+|||||+|++....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999754
No 366
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.42 E-value=2.3e-07 Score=66.51 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=76.8
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS----------YENVAKKWIPELRHY--APGVPIILVGTK 119 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~--~~~~p~iiv~nK 119 (198)
..+.+.+.|.+|+..-+..|.+.+.+...+++.+..+..+. .++. ..+...+-.+ +.+.++|+.+||
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence 34667789999998888889999988887777766543221 2222 2222222222 258999999999
Q ss_pred CCcccccccc-------cCCCCCccccHHHHHHHHHHc----CC--CE---EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 120 LDLRDDKQFL-------ADHPGAVPITTAQGEELRKLI----GA--PV---YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 120 ~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~--~~---~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
-|+.++.... +...+.. .+..-+++|..+. +- .. -..++|.+.+||.-+|..+-+.+..
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~-qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPK-QDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCc-ccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 9998764311 1111111 2333344444332 11 01 1248888999999999888776654
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=1.3e-06 Score=60.18 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=35.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (198)
...+++++|.+|+|||||+|.+..... ......++..... ...+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 467899999999999999999997643 2222233322221 2222 2366999998
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.39 E-value=3.3e-07 Score=62.94 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=32.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCC-------CCCccccceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
--++++|++|||||||+|.+........ ............+.+++. ..++||||-..+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 3589999999999999999997632111 011111122233334332 2489999975543
No 369
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.38 E-value=9.3e-07 Score=68.01 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=36.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~ 64 (198)
+.++++++|.|++|||||||++.+...... .+..+..- ...+.++.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 458899999999999999999998765221 11112111 112222322 669999995
No 370
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.37 E-value=1.6e-06 Score=63.39 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=50.1
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhhC--CCCCEEEEeecCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENVAKKWIPELRHYA--PGVPIILVGTKLD 121 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D 121 (198)
+.+..+|.+||..-+..|...+....++|||+.-+... -+.+. -.+...+.... ..+.+|+.+||.|
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~Ea-L~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHH-HHHHHHHHhhhHHhhhheeEEecHHH
Confidence 56779999999999999999999999999999765421 11222 11222222221 4688999999999
Q ss_pred cccc
Q 029144 122 LRDD 125 (198)
Q Consensus 122 l~~~ 125 (198)
+...
T Consensus 281 llae 284 (379)
T KOG0099|consen 281 LLAE 284 (379)
T ss_pred HHHH
Confidence 8754
No 371
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.32 E-value=6.4e-06 Score=66.14 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred EEEEEEeCCCcc-------------CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144 54 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (198)
Q Consensus 54 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (198)
-.+.+.|.||.- ...++..++..+.+++|+|+--.+-+.-......+...+... +...|+|++|.
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeec
Confidence 456789999932 122445677889999999985433333333334555555555 88899999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHH
Q 029144 121 DLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
|+.+... .+.+.+++....
T Consensus 490 DlAEknl----------A~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNV----------ASPSRIQQIIEG 508 (980)
T ss_pred chhhhcc----------CCHHHHHHHHhc
Confidence 9988754 556666655443
No 372
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.32 E-value=2.2e-06 Score=64.77 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=56.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC---------------CeEEEEEEEeCCCccCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD---------------GSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~l~i~D~~G~~~~~ 68 (198)
+.+++.+||.|++|||||+|.+..... +.++..++.+.....+.+. -....++++|++|.-.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 567999999999999999999997644 4455555544333333321 135789999999943322
Q ss_pred c----ccc---cccCCCcEEEEEEECC
Q 029144 69 R----LRP---LSYRGADVFLLAFSLI 88 (198)
Q Consensus 69 ~----~~~---~~~~~~~~~i~v~d~~ 88 (198)
+ +-. ..++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 1 222 2356789999998764
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.1e-06 Score=68.11 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhhCC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~ 30 (198)
++++|.+|+|||||+|+|+...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999753
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=3.5e-06 Score=58.21 Aligned_cols=65 Identities=11% Similarity=-0.030 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCccCccccc--------ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144 53 TVNLGLWDTAGQEDYNRLR--------PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 122 (198)
.....+.|+||-..-.... ....-..+.+++++|+.+..........+..++... =++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence 3566789999964221111 112234789999999865443322223344444432 2568899996
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=98.31 E-value=1.7e-06 Score=66.67 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccCcccc----cccc--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144 54 VNLGLWDTAGQEDYNRL----RPLS--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 127 (198)
+.+.++||+|....... .... ..+.|..++|+|+..+........ .+... -.+--+|+||.|......
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~----~f~~~--~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR----EFNEA--VGIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH----HHHhc--CCCCEEEEeeecCCCCcc
Confidence 45789999996542211 1111 235788999999976432222112 22211 123467789999965432
Q ss_pred cccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144 128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (198)
-+...+...+. |+..++ +|++++++.
T Consensus 297 --------------~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 --------------AALSIAYVIGK-PILFLG--VGQGYDDLI 322 (336)
T ss_pred --------------HHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence 33444555666 555565 788887765
No 376
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.29 E-value=7e-06 Score=73.23 Aligned_cols=113 Identities=23% Similarity=0.217 Sum_probs=62.0
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCC----CCc--cccceeEEEEECCeEEEEEEEeCCCc----c----Ccccccccc
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTFPTDY----VPT--VFDNFSANVVVDGSTVNLGLWDTAGQ----E----DYNRLRPLS 74 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~----~----~~~~~~~~~ 74 (198)
.+|+|++|+||||++.+- +..++-.. ..+ .+..........+. -.++|++|. + .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999765 22222110 011 11111111122222 339999992 1 122334433
Q ss_pred c---------CCCcEEEEEEECCCh-----hhHHHH---HHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 029144 75 Y---------RGADVFLLAFSLISK-----ASYENV---AKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (198)
Q Consensus 75 ~---------~~~~~~i~v~d~~~~-----~s~~~~---~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~ 125 (198)
+ +-.+++|+++|+.+- +..... ....+..+.... -..||.+++||+|+.+-
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 3 247899999998542 211111 122233333333 58999999999999753
No 377
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=5.1e-07 Score=67.30 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=75.0
Q ss_pred EEEEEeCCCccCcccccccccCCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA 130 (198)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 130 (198)
.+.|.|+||++-.....-....-.|++++.+..+. |.+-+.+ ..-.+.. -..++++-||.|+..+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL---aaveiM~---LkhiiilQNKiDli~e~~--- 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL---AAVEIMK---LKHIIILQNKIDLIKESQ--- 196 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH---HHHHHhh---hceEEEEechhhhhhHHH---
Confidence 45699999998776655444445677777776543 2222222 1112222 256888899999976532
Q ss_pred CCCCCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 131 DHPGAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
.....++++.|.+.. ++ |++++||.-++|++-+.+.|++.+..+.+
T Consensus 197 -----A~eq~e~I~kFi~~t~ae~a-PiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 197 -----ALEQHEQIQKFIQGTVAEGA-PIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred -----HHHHHHHHHHHHhccccCCC-ceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 113445566666653 44 79999999999999999999999866544
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.26 E-value=1.3e-05 Score=61.49 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCccCcccc-----c------ccc-cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144 53 TVNLGLWDTAGQEDYNRL-----R------PLS-YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~-----~------~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (198)
.+.+.++||||....... . ... -...+..++|+|++.+. ..+ ... ..+... -.+--+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~-~~a-~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NAL-SQA-KAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHH-HHH-HHHHhh--CCCCEEEEECC
Confidence 367889999996543211 0 011 13467889999998533 222 111 122111 13446789999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (198)
|...... .+.......+. |+..++ +|++++++-
T Consensus 270 D~t~~~G--------------~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAKGG--------------VVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCcc--------------HHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 9754322 34555566677 566666 777776664
No 379
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.25 E-value=7.8e-06 Score=59.80 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=52.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCC--CCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcccc------ccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT--DYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRL------RPL 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~--~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~------~~~ 73 (198)
+..-|.|+|++++|||+|+|.+++. .+.- ...+++........... +....+.++||+|....... ...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4567999999999999999999987 5432 12233322222212121 23467889999996543221 112
Q ss_pred ccCC--CcEEEEEEECCChh
Q 029144 74 SYRG--ADVFLLAFSLISKA 91 (198)
Q Consensus 74 ~~~~--~~~~i~v~d~~~~~ 91 (198)
.+.. ++++|+..+.....
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2233 77888877765443
No 380
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=2e-05 Score=59.20 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=74.4
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
+-..+.+....+.|-.++|+.+.+|+--.....+++-..... ++.-+||+||+|+.++.. .-.++...
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~ 135 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLR 135 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHH
Confidence 444555556677888899999988886666667887777776 888899999999987643 11134555
Q ss_pred HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
.....+. +.+.+|++++.+++++...+....
T Consensus 136 ~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 136 EYEDIGY-PVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred HHHhCCe-eEEEecCcCcccHHHHHHHhcCCe
Confidence 6667787 688899999999999988876543
No 381
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.22 E-value=6.5e-06 Score=45.85 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=31.2
Q ss_pred CcEEEEEEECCC--hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144 78 ADVFLLAFSLIS--KASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (198)
Q Consensus 78 ~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (198)
.++++|++|++. +-+.++. -.++..++..+++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 689999999974 5566666 678889999999999999999998
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.22 E-value=7.8e-06 Score=61.47 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCccCccccc------------ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144 53 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (198)
.+.+.++||||........ ...-..+|..++|+|++... +.. ... ..+.... .+--+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~-~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQA-KVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHH-HHHHhhC--CCCEEEEEcc
Confidence 3677899999975432221 01112478999999997432 222 211 2222221 2456788999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (198)
|...... .+.......+. |+..++ +|++++++-
T Consensus 228 De~~~~G--------------~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKGG--------------IILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCcc--------------HHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 9965432 34455556666 555555 777776653
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=7.6e-05 Score=50.88 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=79.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCC-CccCcccc------------
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA-GQEDYNRL------------ 70 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~-G~~~~~~~------------ 70 (198)
...+||.+-|+||+||||++.++...--... -..+..+...+.-++..+-+.+.|+. |...+.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4568999999999999999977764321111 12233445555566667777788877 32111100
Q ss_pred -------------cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCc
Q 029144 71 -------------RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAV 136 (198)
Q Consensus 71 -------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 136 (198)
....++.+|++ ++|--.+-.+.. +.+...+.... .+.|++.++.+.+..+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr~P------------ 144 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSRHP------------ 144 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccCCh------------
Confidence 01222334443 455444333322 34444444433 4788887777665532
Q ss_pred cccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
-+++ ....+. .++. .+-.|-+.+++.+...+-
T Consensus 145 -----~v~~-ik~~~~-v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 145 -----LVQR-IKKLGG-VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred -----HHHH-hhhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence 1222 233333 2332 455566688888887764
No 384
>PRK12289 GTPase RsgA; Reviewed
Probab=98.14 E-value=5.8e-06 Score=64.23 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhhCC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~ 30 (198)
++++|.+|+|||||+|.++...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 385
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=1.1e-05 Score=59.59 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=44.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeE---E--EEECCeEEEEEEEeCCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA---N--VVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~l~i~D~~G 63 (198)
-.++|+-+|..|.|||||+..+++-.+.....+.....+.. + +.-.+....+++.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 36899999999999999999999988866555544433321 1 22256778899999999
No 386
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=4.5e-06 Score=63.33 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-.++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998754
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.11 E-value=4.9e-06 Score=61.69 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|.+|+|||||+|++...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999999999999975
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.08 E-value=7.1e-06 Score=64.24 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+++++|.+|+|||||+|+++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999974
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=9.2e-06 Score=61.01 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC------CCCCC-CCccccceeEEEEECCeEEEEEEEeCCCccCccc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~------~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (198)
-.+++|.+|+|||||+|++.... +.+.. ...+.......+..++.. .+.||||-..+.-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 46899999999999999998632 11111 111122233334443221 2899999866543
No 390
>PRK13695 putative NTPase; Provisional
Probab=98.01 E-value=0.00032 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
++|++.|.+|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999987653
No 391
>PRK13796 GTPase YqeH; Provisional
Probab=97.99 E-value=1.1e-05 Score=63.18 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++.++|.+|+|||||+|+++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999864
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=1.5e-05 Score=60.82 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|++|+|||||+|.+....
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998654
No 393
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.95 E-value=5.5e-05 Score=53.79 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=66.3
Q ss_pred EEEEeCCCccC-ccccc--ccc---cCC---CcEEEEEEECCCh-hhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 029144 56 LGLWDTAGQED-YNRLR--PLS---YRG---ADVFLLAFSLISK-ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124 (198)
Q Consensus 56 l~i~D~~G~~~-~~~~~--~~~---~~~---~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~ 124 (198)
.-++|+|||-+ |.... +.. +.+ .=++++++|.+=- ++.+.+ .-.+..+.... -..|.|-|++|+||..
T Consensus 100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~Kfi-SG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFI-SGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHH-HHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 44999999854 33221 111 111 2255666665311 111111 12222222222 3799999999999987
Q ss_pred ccccc-------c------CCCCCcccc------HHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 125 DKQFL-------A------DHPGAVPIT------TAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 125 ~~~~~-------~------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
..... . ...+...-+ ..-...+..+++...|++..+.+-++++.++..|-.++.
T Consensus 179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 62210 0 001111111 122345566788888999999999999999988776653
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.95 E-value=0.00013 Score=58.02 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=39.5
Q ss_pred EEEEEEEeCCCccCccccc----cc--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 53 TVNLGLWDTAGQEDYNRLR----PL--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
.+.+.|+||||........ .. ...+++.+++|+|+..+...... ...+... -.+--+|+||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCCC
Confidence 4678899999964332111 11 12357889999998755433222 1233222 2355778999998654
No 395
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.94 E-value=1.3e-05 Score=57.71 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=63.7
Q ss_pred EEEEEEeCCCccCcc----cccc--cccCCCcEEEEEEEC------CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecC
Q 029144 54 VNLGLWDTAGQEDYN----RLRP--LSYRGADVFLLAFSL------ISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~----~~~~--~~~~~~~~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~ 120 (198)
-...++|+|||-++- +++. ..++..+.=+.++.. ++|..+-.. ++..+.... =..|-|-|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence 345699999985432 1211 223345544444443 455555443 222222222 278999999999
Q ss_pred Cccccccccc-------------------CC-CC--CccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 121 DLRDDKQFLA-------------------DH-PG--AVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 121 Dl~~~~~~~~-------------------~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
|+........ +. .. ..+--.+.+-.+...++...|...+..+.+++-.+...|-+
T Consensus 174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk 250 (290)
T KOG1533|consen 174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK 250 (290)
T ss_pred HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence 9976544110 01 11 11122344556677777766666666666666666655543
No 396
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.4e-06 Score=65.52 Aligned_cols=116 Identities=17% Similarity=0.096 Sum_probs=80.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC--CCC---CCCCCcc-ccc-----------eeEEEEECCeEEEEEEEeCCCccCcc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN--TFP---TDYVPTV-FDN-----------FSANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~--~~~---~~~~~t~-~~~-----------~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
.-+|.++.+-.+||||...+++.- .+. ..-...+ .++ .+.-+..+-+.++++++||||+-.|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 347889999999999999888732 110 0001111 111 12223445556888899999999999
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
-...+.++-.|+++.|+|++-+-..+.+ ..|.+. .++ ++|....+||+|....
T Consensus 117 leverclrvldgavav~dasagve~qtl-tvwrqa-dk~--~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA-DKF--KIPAHCFINKMDKLAA 169 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCccccee-eeehhc-ccc--CCchhhhhhhhhhhhh
Confidence 9999999999999999999877665555 455433 222 6888888999997643
No 397
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=5.8e-05 Score=60.25 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=75.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CC------CCCCCccccceeEEEEE-----------------------CCeE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP------TDYVPTVFDNFSANVVV-----------------------DGST 53 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~------~~~~~t~~~~~~~~~~~-----------------------~~~~ 53 (198)
+.-++-++-+..-|||||-..+.... +. ..+..|..+...+.+++ ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 44577889999999999998887431 11 11111111111111111 2345
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
+.++++|.||+-.|.+..+..++--|+.++|+|--++--.+.. .-+.+.+... +.-++++||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence 8889999999999999999999999999999997766544433 3444444443 4445679999975
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.87 E-value=0.00011 Score=58.77 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=37.6
Q ss_pred EEEEEEeCCCccCccccc------ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCcccc
Q 029144 54 VNLGLWDTAGQEDYNRLR------PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDD 125 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~ 125 (198)
..+.++||||........ ...+..+|.+++|+|++... +. -.....+.. ..++ -+|.||.|....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~~---~l~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFHE---AVGIGGIIITKLDGTAK 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHHh---cCCCCEEEEecccCCCc
Confidence 367899999975533111 11234678999999987652 22 112222222 2333 567899998643
No 399
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.86 E-value=0.0024 Score=44.21 Aligned_cols=143 Identities=8% Similarity=0.018 Sum_probs=92.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|+..+...|+++|..+.++..|..++....- . +.+++.-...-..- ......-...|.
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~-------------------~~l~Vh~a~sLPLp-~e~~~lRprIDl 67 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E-------------------FKLKVHLAKSLPLP-SENNNLRPRIDL 67 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c-------------------eeEEEEEeccCCCc-ccccCCCceeEE
Confidence 4455778999999999999999999886321 1 12222222111000 001111123699
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|++|..+.-+++.. +.-+..+...+.--.+.++++-....+.- .+..++..+++..+.. +++.+.-
T Consensus 68 IVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~----------sv~~~~V~kla~~y~~-plL~~~l 135 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHC----------SVHPNEVRKLAATYNS-PLLFADL 135 (176)
T ss_pred EEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCccccc----------ccCHHHHHHHHHHhCC-CEEEeec
Confidence 9999999999999988 55555555544333445555555554433 2788999999999998 6777777
Q ss_pred CCCCCHHHHHHHHHHHH
Q 029144 161 KTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~ 177 (198)
.+.++...+-..+.+.+
T Consensus 136 e~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 136 ENEEGRTSLAQRLLRML 152 (176)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 77777666666666554
No 400
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00074 Score=49.43 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=91.2
Q ss_pred eEEEEECCCCC--CHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 7 IKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 7 ~~i~vvG~~~~--GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
-.++|+|.+|+ ||.+++.++....+...........+ ..++.-......+.+.-.+--+.+.--......-..++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 46889999999 99999999988766443332222111 1111111111111222111111111111112233568999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccc-------cc--------------cC-----CC---
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQ-------FL--------------AD-----HP--- 133 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-------~~--------------~~-----~~--- 133 (198)
|||.+....+..+ ..|+..-... ..- .+-++||.|..++.. +. .+ ..
T Consensus 85 vfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 85 VFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999988888777 7776543332 222 245689999876421 00 00 00
Q ss_pred -----CCccccHHHHHHHHHHcCCCEEEEeccCCC------------CCHHHHHHHHHHHH
Q 029144 134 -----GAVPITTAQGEELRKLIGAPVYIECSSKTQ------------QNVKAVFDAAIKVV 177 (198)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~i~~~~ 177 (198)
...-.......+++.+.++ .+++.++.+. .|++.+|..+...+
T Consensus 162 llgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 1111122335678888888 8999888532 47888888877655
No 401
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=5.8e-05 Score=58.59 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=92.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCC----------------C--------CCCCcc---ccceeEEE-EECCeE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP----------------T--------DYVPTV---FDNFSANV-VVDGST 53 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~----------------~--------~~~~t~---~~~~~~~~-~~~~~~ 53 (198)
...++++++|+..+||||+-..++.. ... + ++.... +....... ...-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 45789999999999999998554421 000 0 000000 00010001 112223
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---HHHH-HHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL 129 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 129 (198)
-++++.|+||+-.|-...-....+||+.++|+++...+. |+.- ..+-...+.+...-...|+++||+|-+..+-
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW-- 234 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW-- 234 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc--
Confidence 567799999999988877777889999999999854321 2111 0011123333334567889999999875321
Q ss_pred cCCCCCccccHHHHHHHHHHcCC-----CEEEEeccCCCCCHHHHH
Q 029144 130 ADHPGAVPITTAQGEELRKLIGA-----PVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 170 (198)
+.+......+....+....+. ..|+++|..+|.++++.-
T Consensus 235 --s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 235 --SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred --chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 000001122333444443322 248899999999988754
No 402
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=2.5e-06 Score=62.21 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECC--eEEEEEEEeCCCccCccccccccc--CCC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG--STVNLGLWDTAGQEDYNRLRPLSY--RGA 78 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~i~D~~G~~~~~~~~~~~~--~~~ 78 (198)
.+.+..|++.|..+. ||+|++++...- ....|+..-.+.......+ ..-..++|+.+|......+..--+ .+.
T Consensus 42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 345778999998764 999988886642 2233444333333222322 223356999999765443322222 122
Q ss_pred --cEEEEEEECCChhhHHHHHHHHHHHHhhh------------------------------------C--CCCCEEEEee
Q 029144 79 --DVFLLAFSLISKASYENVAKKWIPELRHY------------------------------------A--PGVPIILVGT 118 (198)
Q Consensus 79 --~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------------~--~~~p~iiv~n 118 (198)
-.+|+++|++++..+....+..++.++.+ + --.||+||+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 26789999999876543323332222210 0 0369999999
Q ss_pred cCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|.|.....+ +..+.....-++.++..+|. .....|++-
T Consensus 199 KYDvFq~Fe-----sekRkH~C~~LRf~Ah~yGa-aLlmfSskM 236 (363)
T KOG3929|consen 199 KYDVFQDFE-----SEKRKHICKTLRFVAHYYGA-ALLMFSSKM 236 (363)
T ss_pred chhhhcccc-----HHHHHHHHHHHHHHHHHhhh-HHHHHHHhh
Confidence 999976532 22222333445566667776 344456554
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=97.78 E-value=0.0003 Score=56.28 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=43.1
Q ss_pred EEEEEEeCCCccCcccc-c---cc--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144 54 VNLGLWDTAGQEDYNRL-R---PL--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~-~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 127 (198)
+.+.|+||||....... . .. ..-..+.+++|+|+........ ....+.... ...-+|.||.|......
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~----~a~~F~~~~--~i~giIlTKlD~~~rgG 257 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVN----TAKAFNEAL--GLTGVILTKLDGDARGG 257 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHH----HHHHHHhhC--CCCEEEEeCccCccccc
Confidence 66889999995432211 0 00 1125678899999875432222 222333221 12346679999754322
Q ss_pred cccCCCCCccccHHHHHHHHHHcCCC
Q 029144 128 FLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.+.......+.|
T Consensus 258 --------------~alsi~~~~~~P 269 (433)
T PRK10867 258 --------------AALSIRAVTGKP 269 (433)
T ss_pred --------------HHHHHHHHHCcC
Confidence 355566666663
No 404
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.77 E-value=3.7e-05 Score=61.27 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=37.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
.+.|.+||.|||||||.||.+.+.+-+.- .+|.....|+... +.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~-ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF-LSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE-cCC---CceecCCCCc
Confidence 58899999999999999999999865432 2222223333332 222 3569999995
No 405
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00038 Score=54.53 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
-.++++|++|+||||++.++..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999977754
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.71 E-value=0.00019 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
||++-|.+|+||||++++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999888754
No 407
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.71 E-value=4.6e-05 Score=57.21 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=36.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc------cceeEEEEECCeEEEEEEEeCCCc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF------DNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
...++++|+|.||+|||||+|++........-...++ ..+...+.+... -.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 4578999999999999999998765432221111111 112222233222 23669999995
No 408
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.70 E-value=0.00045 Score=47.19 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (198)
.+.+.++|++|... ....++..+|.+++|...+-.+.+.-. .+ ..+. .-=+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI--KA-GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh--hh-hHhh-----hcCEEEEeCCC
Confidence 46788999988642 223477889999999887633322221 11 1222 22367789987
No 409
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00019 Score=63.39 Aligned_cols=114 Identities=23% Similarity=0.213 Sum_probs=58.3
Q ss_pred EEEECCCCCCHHHHHHHHhhC-CCCCCCCCccccce-eEEE--EECCeEEEEEEEeCCCc----c----Ccccccccc--
Q 029144 9 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNF-SANV--VVDGSTVNLGLWDTAGQ----E----DYNRLRPLS-- 74 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~-~~~~~~~~t~~~~~-~~~~--~~~~~~~~l~i~D~~G~----~----~~~~~~~~~-- 74 (198)
-+|||++|+||||++..--.. .+.+.......... ...+ ...+ .-.++||+|. + .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 479999999999999432211 11111100000000 1111 1122 2338898882 1 112333322
Q ss_pred -------cCCCcEEEEEEECCChhh-----HHHHHHHH---HHHHhhhC-CCCCEEEEeecCCcccc
Q 029144 75 -------YRGADVFLLAFSLISKAS-----YENVAKKW---IPELRHYA-PGVPIILVGTKLDLRDD 125 (198)
Q Consensus 75 -------~~~~~~~i~v~d~~~~~s-----~~~~~~~~---~~~~~~~~-~~~p~iiv~nK~Dl~~~ 125 (198)
.+-.+++|+.+|+.+--+ .+.....+ ++.+.... -..||.+++||.|+.+-
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 345789999999854211 11111112 22233222 48999999999999763
No 410
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.65 E-value=0.00026 Score=47.77 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=45.4
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
+.+.++|+|+.. .......+..+|.++++.+.+ ..++... ...++.+.......++.+|.|+++...
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESPK 111 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence 667899999753 333345788899999999875 4455544 344455544444667889999997543
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0005 Score=55.98 Aligned_cols=81 Identities=22% Similarity=0.184 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCccCcccccc---cccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144 53 TVNLGLWDTAGQEDYNRLRP---LSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~---~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 127 (198)
.+.+.|+||+|......... ..+. .....++|++.+.. ..+. ...+..+.. ..+.-+|+||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl-~eii~~f~~---~~~~gvILTKlDEt~~-- 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDL-DEVVRRFAH---AKPQGVVLTKLDETGR-- 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHH-HHHHHHHHh---hCCeEEEEecCcCccc--
Confidence 46788999999643321100 0010 12345677776532 3333 233333332 2467789999999542
Q ss_pred cccCCCCCccccHHHHHHHHHHcCCC
Q 029144 128 FLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.-.+.......+.+
T Consensus 500 ------------lG~aLsv~~~~~LP 513 (559)
T PRK12727 500 ------------FGSALSVVVDHQMP 513 (559)
T ss_pred ------------hhHHHHHHHHhCCC
Confidence 24556666677763
No 412
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=7.5e-05 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-+|+|+|++|+|||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999888754
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.54 E-value=0.00034 Score=55.89 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=44.8
Q ss_pred EEEEEEeCCCccCccccc----cc--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144 54 VNLGLWDTAGQEDYNRLR----PL--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 127 (198)
+.+.|+||||........ .. ..-+.+.+++|+|+.... +. ......+.... ...=+|.||.|......
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~-~~~a~~f~~~v--~i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DA-VNTAKTFNERL--GLTGVVLTKLDGDARGG 256 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HH-HHHHHHHHhhC--CCCEEEEeCccCccccc
Confidence 567899999954332110 00 123578889999987543 22 22333333322 12346689999754322
Q ss_pred cccCCCCCccccHHHHHHHHHHcCCC
Q 029144 128 FLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.+...+...+.|
T Consensus 257 --------------~~lsi~~~~~~P 268 (428)
T TIGR00959 257 --------------AALSVRSVTGKP 268 (428)
T ss_pred --------------HHHHHHHHHCcC
Confidence 356666667764
No 414
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.54 E-value=0.0062 Score=47.00 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=51.9
Q ss_pred EEEEEEeCCCccCc----cc-cccccc---CCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 54 VNLGLWDTAGQEDY----NR-LRPLSY---RGADVFLLAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 54 ~~l~i~D~~G~~~~----~~-~~~~~~---~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
+...++++.|...= .+ .+...+ -..|+++-|+|+.+-..... .......++.. .=+|++||+|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCC
Confidence 44557777774321 11 111122 23578999999976544332 22333334432 2378899999976
Q ss_pred ccccccCCCCCccccHHHHHHHHHHc-CCCEEEEeccCCCCCHHHHH
Q 029144 125 DKQFLADHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~ 170 (198)
+. ..+..+...++. ...+++.+|. .+.+..+++
T Consensus 160 ~~------------~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 160 AE------------ELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred HH------------HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 53 233334444443 2235776666 344444444
No 415
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=8.5e-05 Score=48.71 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 416
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.50 E-value=0.00014 Score=56.39 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=37.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (198)
.+.+++.|+|-|++||||+||++........ ..|+. ......+..+ -.+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheecc---CCceeccCCce
Confidence 4678999999999999999999998765222 11111 1122222232 24569999995
No 417
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.0001 Score=51.91 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+|+|+|+||+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988866
No 418
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.48 E-value=0.00049 Score=48.22 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=29.9
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 79 DVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
|++++|+|+.++.+... ..+...+.....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 78999999988644322 2333332111136899999999999653
No 419
>PRK07261 topology modulation protein; Provisional
Probab=97.48 E-value=0.00011 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+|+|+|.+|+|||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999887643
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.46 E-value=0.00017 Score=52.17 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
|-+++..-|+++|++|+|||||++.+...
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 67788889999999999999999888753
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0013 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
-.|+++|+.|+||||++..+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999976653
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.00078 Score=45.12 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.-.+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999888764
No 423
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.42 E-value=0.00012 Score=49.39 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|+++|++|+||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988743
No 424
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.42 E-value=0.003 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
=.++-|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3567899999999999999854
No 425
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.42 E-value=0.00019 Score=50.08 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=25.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
|...+..-+.++|.+|+|||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 66667778999999999999999988865
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.41 E-value=0.00019 Score=41.01 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
..++.|+.|+|||||+.++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999877643
No 427
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.35 E-value=0.00012 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999988765
No 428
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.33 E-value=0.0018 Score=40.22 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=42.3
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-cccccCCCcEEEEEEEC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFLLAFSL 87 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~ 87 (198)
+++.|..|+||||+...+...--...+ ....++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999766543211111 111122 4669999976432221 13455678999999886
Q ss_pred CCh
Q 029144 88 ISK 90 (198)
Q Consensus 88 ~~~ 90 (198)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 543
No 429
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.32 E-value=0.00031 Score=50.83 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..+.+.|.|.|++|||||||.+.+...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887754
No 430
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.31 E-value=0.00023 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+++++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999888764
No 431
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.31 E-value=0.00028 Score=41.53 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999888765
No 432
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.27 E-value=0.0004 Score=49.30 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..=|+|+|++|+|||||+++++..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 445899999999999999999865
No 433
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00051 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+..-|+|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999998754
No 434
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00039 Score=50.56 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
+|+|+|++||||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988853
No 435
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.00026 Score=54.89 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=32.7
Q ss_pred eEEEEEEEeCCCccCcc-cccc-----cccCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029144 52 STVNLGLWDTAGQEDYN-RLRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPEL 104 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (198)
..+.+.|.||+|...-. ++.. .-.-+.|-+|+|.|++-+...+.....+.+.+
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 35778899999943211 1111 11235899999999988776655545444443
No 436
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00042 Score=50.85 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|--..+++|+|+|+|||||||+...+..
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445678999999999999999988764
No 437
>PRK14527 adenylate kinase; Provisional
Probab=97.21 E-value=0.0004 Score=49.52 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|+.++..-|+++|++|+||||+...+..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 6667778899999999999999988864
No 438
>PRK06217 hypothetical protein; Validated
Probab=97.21 E-value=0.00034 Score=49.51 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+|+|+|.+|+||||+.+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988754
No 439
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.0064 Score=48.84 Aligned_cols=80 Identities=20% Similarity=0.108 Sum_probs=44.5
Q ss_pred EEEEEEeCCCccCcc----cccccccC---CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 54 VNLGLWDTAGQEDYN----RLRPLSYR---GADVFLLAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
+.+.++|+||..... .....++. ...-+.+|++++-. ..+.. ....+... + +--+|.||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~----~~~~f~~~--~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD----IYKHFSRL--P-LDGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH----HHHHhCCC--C-CCEEEEeccccccc
Confidence 567899999975443 11112222 23466788887543 22332 22233322 1 23577899999543
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
.-.+..+....+.+.
T Consensus 373 --------------~G~i~~~~~~~~lPv 387 (424)
T PRK05703 373 --------------LGSILSLLIESGLPI 387 (424)
T ss_pred --------------ccHHHHHHHHHCCCE
Confidence 235667777777743
No 440
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.20 E-value=0.00075 Score=52.92 Aligned_cols=66 Identities=30% Similarity=0.381 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCccCccccc----ccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCcccc
Q 029144 53 TVNLGLWDTAGQEDYNRLR----PLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDD 125 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~ 125 (198)
.+.+.++||.|...++... ..++. ...-+.+|++++.. ..++ .+.+..++. .|+ -++.||.|....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dl-kei~~~f~~----~~i~~~I~TKlDET~s 353 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDL-KEIIKQFSL----FPIDGLIFTKLDETTS 353 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHH-HHHHHHhcc----CCcceeEEEcccccCc
Confidence 4567899999976654221 22222 23355667777643 2333 333334332 333 466899998653
No 441
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.0004 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHhhCC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~ 30 (198)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999887753
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.00043 Score=45.98 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF 31 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~ 31 (198)
-.++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999998887653
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.0029 Score=49.99 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=56.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHh----hCCC------CCCCCCccccc-------eeEEEEE-----------------
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYT----SNTF------PTDYVPTVFDN-------FSANVVV----------------- 49 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~----~~~~------~~~~~~t~~~~-------~~~~~~~----------------- 49 (198)
..+..|+++|..|+||||.+-.+- .... .+.|.|...+. +...+.-
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 357789999999999999884332 2111 12233322110 0000000
Q ss_pred -CCeEEEEEEEeCCCccCcccc-c-----ccccCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029144 50 -DGSTVNLGLWDTAGQEDYNRL-R-----PLSYRGADVFLLAFSLISKASYENVAKKWIPEL 104 (198)
Q Consensus 50 -~~~~~~l~i~D~~G~~~~~~~-~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (198)
....+.+.|+||+|-...+.. . -...-+.|-+++|+|+.-+.........+.+.+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 112356789999995443211 1 122346899999999987766555544444443
No 444
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.00041 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
+|+++|.+|+||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888653
No 445
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.15 E-value=0.00053 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.4
Q ss_pred eccCCCCCHHHHHHHHHHHHcC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+||++.+-+.|+++.+.+.+..
T Consensus 164 TSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999988887754
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0078 Score=45.27 Aligned_cols=80 Identities=20% Similarity=0.084 Sum_probs=44.7
Q ss_pred EEEEEEEeCCCccCcccc----ccccc--CCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 53 TVNLGLWDTAGQEDYNRL----RPLSY--RGADVFLLAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
.+.+.++|+||....... +...+ .+.+-.++|+|++. ..... .+...+.. -.+-=+|.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~----~~~~~f~~---~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI----EIITNFKD---IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH----HHHHHhCC---CCCCEEEEEeecCCCC
Confidence 367789999997543211 11111 24567899999863 32232 22223332 2233567899999654
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.. .+..++...+.|
T Consensus 227 ~G--------------~~l~~~~~~~~P 240 (270)
T PRK06731 227 SG--------------ELLKIPAVSSAP 240 (270)
T ss_pred cc--------------HHHHHHHHHCcC
Confidence 32 455666666663
No 447
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.003 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~ 27 (198)
.--++++|+.|+||||++..+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999996664
No 448
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0022 Score=54.63 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029144 8 KCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~ 27 (198)
-|+++|+.|+||||.+..+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999996665
No 449
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.13 E-value=0.0021 Score=40.92 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=46.6
Q ss_pred EEEEC-CCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 9 i~vvG-~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
|++.| ..|+||||+...+...-.... .++. .+..+ ..+.+.++|+|+.... .....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl------~~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL------LIDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE------EEeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56777 558999999855543211010 0111 00011 1156779999986432 223566779999999986
Q ss_pred CChhhHHHHHHHHHH
Q 029144 88 ISKASYENVAKKWIP 102 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (198)
+ ..++... ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 4556555 44444
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00042 Score=50.74 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|.++|++|||||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999877654
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.12 E-value=0.00049 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.|+|+|+.|+|||||++.+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888764
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.10 E-value=0.00047 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999998777653
No 453
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00055 Score=47.91 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
+-.-+++.|++|+|||||++.++...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998764
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.08 E-value=0.00047 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|++|||||||++-+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999866543
No 455
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.08 E-value=0.0005 Score=45.34 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999877754
No 456
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.07 E-value=0.0041 Score=43.75 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=56.6
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD 131 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 131 (198)
..+.+.++|+|+...- .....+..+|.+++++..+ ..+.... ..+.+.+... +.|+.+|+|++|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 3467889999976322 2234567899999999876 3455555 5666666655 6788999999987542
Q ss_pred CCCCccccHHHHHHHHHHcCC
Q 029144 132 HPGAVPITTAQGEELRKLIGA 152 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (198)
...+..++.+..+.
T Consensus 159 -------~~~~~~~~~~~~~~ 172 (179)
T cd03110 159 -------IAEEIEDYCEEEGI 172 (179)
T ss_pred -------hHHHHHHHHHHcCC
Confidence 23456667777777
No 457
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.06 E-value=0.0003 Score=54.71 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=51.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEE-EECCeEEEEEEEeCCCccCc--ccccccccCCCc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAGQEDY--NRLRPLSYRGAD 79 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~i~D~~G~~~~--~~~~~~~~~~~~ 79 (198)
..+.+-|.+||.|++||||+||.|........ .|..++.-...+ ++- -.+-++|+||.--- .+.....+ -
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---h
Confidence 45788999999999999999999998765432 233322211110 010 23459999995221 22222333 3
Q ss_pred EEEEEEECCChhhHH
Q 029144 80 VFLLAFSLISKASYE 94 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~ 94 (198)
+++-|=.+.+++.+-
T Consensus 377 GvVRVenv~~pe~yi 391 (572)
T KOG2423|consen 377 GVVRVENVKNPEDYI 391 (572)
T ss_pred ceeeeeecCCHHHHH
Confidence 567777778876543
No 458
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.05 E-value=0.0006 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999877643
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.05 E-value=0.00061 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999988864
No 460
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.04 E-value=0.0007 Score=52.28 Aligned_cols=95 Identities=22% Similarity=0.151 Sum_probs=62.3
Q ss_pred EeCCCcc-CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcc
Q 029144 59 WDTAGQE-DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137 (198)
Q Consensus 59 ~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 137 (198)
-+.||+. .+.......+..+|+++-|+|+.++.+.... .+.....+.|.++|+||+|+.+..
T Consensus 15 ~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~----------- 77 (322)
T COG1161 15 QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE----------- 77 (322)
T ss_pred cCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-----------
Confidence 3446653 4455556677889999999999998765543 333334466779999999997754
Q ss_pred ccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHH
Q 029144 138 ITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171 (198)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (198)
+.....+.+....+. ..+.+++..+.+...+..
T Consensus 78 ~~~~W~~~~~~~~~~-~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 78 VTKKWKKYFKKEEGI-KPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHHHHHHHhcCCC-ccEEEEeecccCccchHH
Confidence 333334444444444 456678887777666664
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.04 E-value=0.00063 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.|+++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999988654
No 462
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.012 Score=46.67 Aligned_cols=81 Identities=23% Similarity=0.131 Sum_probs=44.6
Q ss_pred EEEEEEEeCCCccCccc----ccccccCC--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 53 TVNLGLWDTAGQEDYNR----LRPLSYRG--AD-VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~----~~~~~~~~--~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
.+.+.++||+|...... .....+.. .+ -.++|+|++.. ..++ . ..+..+..--+-=+|.||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~-~---~~~~~~~~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDV-K---EIFHQFSPFSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHH-H---HHHHHhcCCCCCEEEEEeccCCCc
Confidence 46788999999654321 11112221 23 57899999765 2222 2 233333211234567899999654
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
. -.+..++...+.|
T Consensus 328 ~--------------G~~l~~~~~~~~P 341 (388)
T PRK12723 328 V--------------GNLISLIYEMRKE 341 (388)
T ss_pred c--------------hHHHHHHHHHCCC
Confidence 3 2455666666664
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.03 E-value=0.00063 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988664
No 464
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.02 E-value=0.0029 Score=41.61 Aligned_cols=23 Identities=22% Similarity=0.201 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
--|++-|+-|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988764
No 465
>PRK13949 shikimate kinase; Provisional
Probab=97.02 E-value=0.0007 Score=47.31 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
+|+++|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987764
No 466
>PRK14532 adenylate kinase; Provisional
Probab=97.02 E-value=0.00061 Score=48.37 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
++|+++|+||+||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999888643
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.00 E-value=0.00069 Score=43.35 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 029144 7 IKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~ 27 (198)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999998865
No 468
>PRK00625 shikimate kinase; Provisional
Probab=96.99 E-value=0.00072 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 469
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.97 E-value=0.0007 Score=47.92 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
--|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999988874
No 470
>PRK01889 GTPase RsgA; Reviewed
Probab=96.96 E-value=0.0011 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-.++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999998653
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.93 E-value=0.00081 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999988864
No 472
>PLN02674 adenylate kinase
Probab=96.93 E-value=0.001 Score=49.20 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.....+|+++|+||+||+|+..++..
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 34468899999999999999988865
No 473
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.91 E-value=0.003 Score=42.19 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999988865
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.91 E-value=0.0012 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-+|+++|++|+||||+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999888643
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.90 E-value=0.0012 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
--|+++|++|+|||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999888764
No 476
>PRK08233 hypothetical protein; Provisional
Probab=96.89 E-value=0.0012 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+-|++.|.+|+|||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467888999999999999988754
No 477
>PRK14531 adenylate kinase; Provisional
Probab=96.89 E-value=0.0011 Score=46.99 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+|+++|+||+||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988754
No 478
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0011 Score=46.69 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.8
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 029144 7 IKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~ 27 (198)
-.++++|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999998775
No 479
>PRK04195 replication factor C large subunit; Provisional
Probab=96.87 E-value=0.012 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.-.+++.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999887653
No 480
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.87 E-value=0.0032 Score=40.39 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=40.1
Q ss_pred EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeec
Q 029144 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTK 119 (198)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK 119 (198)
.+.++|+|+... ......+..+|.++++.+. +..+.... ..+.+.++... + ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DLPSIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-ChHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 567999998643 2233466789999999875 45556666 56666666543 2 3566677774
No 481
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.87 E-value=0.00089 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=16.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.-.++|.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987764
No 482
>PHA00729 NTP-binding motif containing protein
Probab=96.86 E-value=0.0012 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
...+|++.|.||+|||+|..++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999887654
No 483
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.86 E-value=0.00092 Score=47.57 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
+|+|+|++|+||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888754
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.85 E-value=0.001 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|.|.|++|||||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999888654
No 485
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.85 E-value=0.0011 Score=46.88 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|+++|+|||||||+..++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888653
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.85 E-value=0.0012 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.-.++++|+.|+||||+++.+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3469999999999999999887643
No 487
>PRK02496 adk adenylate kinase; Provisional
Probab=96.85 E-value=0.0012 Score=46.78 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+|+++|++|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988764
No 488
>PLN02200 adenylate kinase family protein
Probab=96.84 E-value=0.0015 Score=48.08 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.++.|+++|.||+||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988864
No 489
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.001 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999987765
No 490
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.0024 Score=49.06 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF 31 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~ 31 (198)
..+|++.|..|+|||||+|.+..-..
T Consensus 173 r~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 173 RCNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred ceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence 36899999999999999999987643
No 491
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.82 E-value=0.009 Score=46.81 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=63.5
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
+..+|++|-|+|+.||-.-.- ...-..+....+-..+++|+||+||.+.- +......-+..++.. .
T Consensus 211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i 276 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I 276 (572)
T ss_pred hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence 456899999999999864321 23334556666789999999999998764 566777788888876 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
.|..|..+..|--.+++.+-+..
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~ 299 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFA 299 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHH
Confidence 66778777677666665555533
No 492
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.81 E-value=0.0012 Score=47.42 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhhCC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~ 30 (198)
|++.|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998877653
No 493
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.80 E-value=0.001 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
+|+|+|++||||||+...+..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 494
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.80 E-value=0.0012 Score=49.09 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|+.|+|||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999888763
No 495
>PF13173 AAA_14: AAA domain
Probab=96.80 E-value=0.0013 Score=43.61 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~ 31 (198)
-+++.|+.++||||++.++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999998887654
No 496
>PRK06547 hypothetical protein; Provisional
Probab=96.79 E-value=0.0017 Score=45.55 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.....|+|.|.+|+||||+.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999888754
No 497
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.78 E-value=0.0012 Score=43.71 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999988865
No 498
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.76 E-value=0.0043 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
+.-+++++|++|.|||+++++|....
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999999764
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.0013 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhhCC
Q 029144 9 CVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~~ 30 (198)
++++|++||||||+++-+-+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999998776543
No 500
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.0019 Score=45.39 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=21.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+..-|++.|.+|+||||+.+.+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999877643
Done!