Query 029144
Match_columns 198
No_of_seqs 148 out of 1491
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.8E-41 6.2E-46 244.9 17.8 165 4-180 11-177 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-38 5.4E-43 229.4 20.6 196 1-198 4-202 (212)
3 3t5g_A GTP-binding protein RHE 100.0 3.1E-36 1.1E-40 212.2 20.7 172 1-184 1-174 (181)
4 3reg_A RHO-like small GTPase; 100.0 5E-36 1.7E-40 213.5 21.7 173 3-183 20-192 (194)
5 4dsu_A GTPase KRAS, isoform 2B 100.0 1.6E-36 5.5E-41 214.7 18.6 182 4-198 2-189 (189)
6 3oes_A GTPase rhebl1; small GT 100.0 1.2E-36 4E-41 218.0 18.0 181 1-198 19-201 (201)
7 3bwd_D RAC-like GTP-binding pr 100.0 1.7E-36 5.7E-41 213.5 15.7 179 1-179 3-181 (182)
8 2atx_A Small GTP binding prote 100.0 2.2E-35 7.6E-40 210.1 21.6 176 4-179 16-193 (194)
9 1mh1_A RAC1; GTP-binding, GTPa 100.0 3E-35 1E-39 207.7 21.9 181 4-184 3-185 (186)
10 2bov_A RAla, RAS-related prote 100.0 9.8E-36 3.4E-40 213.6 18.9 164 4-179 12-177 (206)
11 3q3j_B RHO-related GTP-binding 100.0 1.3E-35 4.6E-40 214.5 19.4 180 4-183 25-207 (214)
12 2q3h_A RAS homolog gene family 100.0 2.8E-35 9.6E-40 210.7 19.6 178 3-180 17-196 (201)
13 1m7b_A RND3/RHOE small GTP-bin 100.0 3.2E-35 1.1E-39 207.7 19.0 177 3-179 4-183 (184)
14 3c5c_A RAS-like protein 12; GD 100.0 5.8E-35 2E-39 207.0 19.5 164 3-179 18-186 (187)
15 2gf0_A GTP-binding protein DI- 100.0 2.8E-35 9.6E-40 210.1 16.6 167 3-182 5-174 (199)
16 2fv8_A H6, RHO-related GTP-bin 100.0 3.6E-34 1.2E-38 206.0 21.8 180 3-182 22-203 (207)
17 2j1l_A RHO-related GTP-binding 100.0 1.2E-34 4E-39 209.5 19.1 177 4-180 32-210 (214)
18 3tw8_B RAS-related protein RAB 100.0 1.4E-34 4.9E-39 203.3 19.1 168 3-182 6-174 (181)
19 2gco_A H9, RHO-related GTP-bin 100.0 5.5E-34 1.9E-38 204.1 22.3 176 4-179 23-200 (201)
20 3kkq_A RAS-related protein M-R 100.0 1.9E-34 6.5E-39 203.3 18.8 163 4-178 16-181 (183)
21 2bcg_Y Protein YP2, GTP-bindin 100.0 7E-34 2.4E-38 204.2 22.1 168 1-180 1-172 (206)
22 1gwn_A RHO-related GTP-binding 100.0 1.3E-34 4.6E-39 208.0 18.1 176 4-179 26-204 (205)
23 1z08_A RAS-related protein RAB 100.0 4.3E-34 1.5E-38 199.0 20.1 165 3-179 3-169 (170)
24 3ihw_A Centg3; RAS, centaurin, 100.0 3.2E-34 1.1E-38 202.7 19.4 164 2-180 16-181 (184)
25 1c1y_A RAS-related protein RAP 100.0 3.2E-34 1.1E-38 199.0 18.9 163 5-178 2-166 (167)
26 4gzl_A RAS-related C3 botulinu 100.0 2.1E-34 7.3E-39 206.7 18.3 174 4-177 28-203 (204)
27 2iwr_A Centaurin gamma 1; ANK 100.0 1.6E-34 5.3E-39 202.9 17.1 165 1-180 2-170 (178)
28 1u8z_A RAS-related protein RAL 100.0 3.2E-34 1.1E-38 199.0 18.5 163 5-179 3-167 (168)
29 2fu5_C RAS-related protein RAB 100.0 6.8E-35 2.3E-39 205.6 15.2 165 4-180 6-172 (183)
30 3cpj_B GTP-binding protein YPT 100.0 1E-33 3.5E-38 205.8 21.7 169 3-183 10-180 (223)
31 2fn4_A P23, RAS-related protei 100.0 5E-34 1.7E-38 200.5 19.4 166 4-181 7-174 (181)
32 2efe_B Small GTP-binding prote 100.0 1.2E-33 4.2E-38 198.7 21.3 166 4-181 10-177 (181)
33 2hup_A RAS-related protein RAB 100.0 1.9E-34 6.5E-39 206.5 17.3 165 4-179 27-193 (201)
34 1r2q_A RAS-related protein RAB 100.0 9.2E-34 3.2E-38 197.1 20.1 165 3-179 3-169 (170)
35 1z2a_A RAS-related protein RAB 100.0 7.6E-34 2.6E-38 197.3 19.5 165 3-179 2-167 (168)
36 1z0f_A RAB14, member RAS oncog 100.0 1.2E-33 4.1E-38 198.2 20.1 165 3-179 12-178 (179)
37 2ew1_A RAS-related protein RAB 100.0 5.4E-34 1.8E-38 204.2 18.4 164 4-179 24-189 (201)
38 2hxs_A RAB-26, RAS-related pro 100.0 3.7E-34 1.3E-38 200.8 17.0 168 3-182 3-176 (178)
39 2gf9_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 197.5 22.6 165 3-179 19-185 (189)
40 2a5j_A RAS-related protein RAB 100.0 8.3E-34 2.8E-38 201.6 18.9 164 4-179 19-184 (191)
41 3tkl_A RAS-related protein RAB 100.0 1.3E-33 4.5E-38 201.0 19.6 168 4-183 14-183 (196)
42 2nzj_A GTP-binding protein REM 100.0 8.2E-34 2.8E-38 198.5 18.2 164 4-179 2-169 (175)
43 2g6b_A RAS-related protein RAB 100.0 4.1E-33 1.4E-37 195.8 21.7 167 3-181 7-176 (180)
44 2bme_A RAB4A, RAS-related prot 100.0 7.5E-34 2.6E-38 200.7 18.0 164 4-179 8-173 (186)
45 1z0j_A RAB-22, RAS-related pro 100.0 3.4E-33 1.2E-37 194.4 20.9 164 3-178 3-168 (170)
46 2atv_A RERG, RAS-like estrogen 100.0 9.2E-34 3.2E-38 202.1 18.3 166 1-179 23-191 (196)
47 1ek0_A Protein (GTP-binding pr 100.0 2.3E-33 7.9E-38 195.1 19.7 166 5-179 2-169 (170)
48 3q72_A GTP-binding protein RAD 100.0 1.1E-33 3.7E-38 196.3 18.0 161 6-179 2-164 (166)
49 2a9k_A RAS-related protein RAL 100.0 1.4E-33 4.9E-38 199.1 18.9 163 5-179 17-181 (187)
50 1kao_A RAP2A; GTP-binding prot 100.0 8.5E-34 2.9E-38 196.7 17.2 162 5-178 2-165 (167)
51 2g3y_A GTP-binding protein GEM 100.0 1.5E-33 5.3E-38 202.9 18.8 164 4-179 35-203 (211)
52 2fg5_A RAB-22B, RAS-related pr 100.0 2.7E-33 9.1E-38 199.1 18.9 165 4-180 21-187 (192)
53 1wms_A RAB-9, RAB9, RAS-relate 100.0 6.4E-33 2.2E-37 194.3 20.5 165 4-180 5-175 (177)
54 2oil_A CATX-8, RAS-related pro 100.0 2.9E-33 1E-37 198.9 18.9 165 3-179 22-188 (193)
55 2erx_A GTP-binding protein DI- 100.0 1.6E-33 5.4E-38 196.3 17.1 164 5-180 2-168 (172)
56 2o52_A RAS-related protein RAB 100.0 7.5E-34 2.6E-38 203.3 15.8 165 3-179 22-188 (200)
57 3q85_A GTP-binding protein REM 100.0 2.6E-33 9.1E-38 194.9 18.1 162 6-179 2-167 (169)
58 3clv_A RAB5 protein, putative; 100.0 3.3E-33 1.1E-37 200.0 18.9 165 1-179 2-204 (208)
59 1zbd_A Rabphilin-3A; G protein 100.0 6.7E-33 2.3E-37 198.6 20.4 165 3-179 5-171 (203)
60 3con_A GTPase NRAS; structural 100.0 7E-33 2.4E-37 196.5 20.3 162 5-179 20-183 (190)
61 1g16_A RAS-related protein SEC 100.0 2.8E-33 9.6E-38 194.8 17.7 163 5-180 2-166 (170)
62 2y8e_A RAB-protein 6, GH09086P 100.0 3.5E-33 1.2E-37 195.8 18.2 163 5-179 13-177 (179)
63 2p5s_A RAS and EF-hand domain 100.0 2.9E-33 1E-37 200.0 17.8 171 3-179 25-197 (199)
64 3cbq_A GTP-binding protein REM 100.0 2.4E-33 8.2E-38 199.9 17.0 166 4-181 21-190 (195)
65 1ky3_A GTP-binding protein YPT 100.0 3.4E-33 1.2E-37 196.4 17.5 167 3-179 5-178 (182)
66 3bc1_A RAS-related protein RAB 100.0 3.2E-33 1.1E-37 198.5 17.5 164 4-179 9-185 (195)
67 2yc2_C IFT27, small RAB-relate 100.0 4.1E-34 1.4E-38 205.3 12.3 168 2-181 16-194 (208)
68 2ce2_X GTPase HRAS; signaling 100.0 1.2E-32 4.2E-37 190.5 19.2 162 5-179 2-165 (166)
69 1x3s_A RAS-related protein RAB 100.0 1.7E-32 5.8E-37 195.0 20.4 165 5-182 14-181 (195)
70 2il1_A RAB12; G-protein, GDP, 100.0 2.6E-33 9.1E-38 199.2 16.0 164 4-178 24-189 (192)
71 1vg8_A RAS-related protein RAB 100.0 6.3E-33 2.2E-37 199.1 18.0 164 4-180 6-176 (207)
72 1z06_A RAS-related protein RAB 100.0 1E-32 3.6E-37 195.5 18.3 163 4-178 18-187 (189)
73 3dz8_A RAS-related protein RAB 100.0 4.1E-34 1.4E-38 203.1 10.9 165 4-180 21-187 (191)
74 2cjw_A GTP-binding protein GEM 100.0 3.1E-32 1.1E-36 193.7 18.6 165 4-180 4-173 (192)
75 2f7s_A C25KG, RAS-related prot 100.0 1.8E-33 6.2E-38 203.6 11.8 166 3-180 22-200 (217)
76 3cph_A RAS-related protein SEC 100.0 1.2E-31 4.1E-36 193.3 19.6 163 4-179 18-182 (213)
77 3t1o_A Gliding protein MGLA; G 100.0 4.7E-33 1.6E-37 198.2 11.4 165 3-181 11-194 (198)
78 2wkq_A NPH1-1, RAS-related C3 100.0 2E-31 6.7E-36 204.2 20.8 176 5-180 154-331 (332)
79 4bas_A ADP-ribosylation factor 100.0 6E-32 2.1E-36 192.8 14.7 166 4-181 15-191 (199)
80 4djt_A GTP-binding nuclear pro 100.0 3.8E-32 1.3E-36 196.7 13.8 168 4-183 9-179 (218)
81 3th5_A RAS-related C3 botulinu 100.0 1.2E-34 4.1E-39 208.0 0.0 174 4-177 28-203 (204)
82 3l0i_B RAS-related protein RAB 100.0 1.4E-33 4.6E-38 201.7 4.8 165 4-180 31-197 (199)
83 3gj0_A GTP-binding nuclear pro 100.0 3E-32 1E-36 197.8 11.9 165 4-182 13-178 (221)
84 1upt_A ARL1, ADP-ribosylation 100.0 1.4E-30 4.7E-35 181.4 17.7 160 4-180 5-170 (171)
85 1f6b_A SAR1; gtpases, N-termin 100.0 9.6E-31 3.3E-35 186.9 17.0 157 4-177 23-197 (198)
86 1ksh_A ARF-like protein 2; sma 100.0 2.8E-30 9.5E-35 182.5 18.8 159 4-180 16-181 (186)
87 1m2o_B GTP-binding protein SAR 100.0 3.1E-30 1.1E-34 183.1 18.9 156 4-176 21-189 (190)
88 1zj6_A ADP-ribosylation factor 100.0 1.9E-30 6.6E-35 183.5 17.6 163 4-184 14-183 (187)
89 2h57_A ADP-ribosylation factor 100.0 1.8E-30 6.3E-35 184.1 17.5 159 4-179 19-187 (190)
90 1r8s_A ADP-ribosylation factor 100.0 3E-31 1E-35 183.6 12.5 155 7-179 1-162 (164)
91 1zd9_A ADP-ribosylation factor 100.0 2.8E-30 9.7E-35 182.9 17.3 160 4-180 20-186 (188)
92 2b6h_A ADP-ribosylation factor 100.0 4.8E-31 1.6E-35 187.6 12.3 159 3-179 26-191 (192)
93 2h17_A ADP-ribosylation factor 100.0 2.6E-30 8.8E-35 182.0 15.0 155 4-176 19-180 (181)
94 2x77_A ADP-ribosylation factor 100.0 1.4E-30 4.6E-35 184.6 13.6 158 4-179 20-184 (189)
95 3llu_A RAS-related GTP-binding 100.0 1.5E-30 5.2E-35 185.5 13.8 166 4-178 18-196 (196)
96 1fzq_A ADP-ribosylation factor 100.0 2.2E-30 7.4E-35 182.5 14.0 158 4-179 14-178 (181)
97 1moz_A ARL1, ADP-ribosylation 100.0 1.2E-29 4.1E-34 178.6 15.8 157 4-178 16-179 (183)
98 2zej_A Dardarin, leucine-rich 100.0 1E-30 3.5E-35 184.6 10.1 165 6-181 2-180 (184)
99 2f9l_A RAB11B, member RAS onco 100.0 1.5E-28 5.2E-33 175.5 21.0 164 4-179 3-168 (199)
100 1oix_A RAS-related protein RAB 100.0 6E-28 2.1E-32 171.4 21.0 161 5-177 28-190 (191)
101 2fh5_B SR-beta, signal recogni 100.0 2.1E-29 7.2E-34 181.8 13.4 173 3-177 4-214 (214)
102 2lkc_A Translation initiation 100.0 1.7E-28 5.9E-33 171.9 17.3 159 3-180 5-172 (178)
103 3r7w_B Gtpase2, GTP-binding pr 100.0 1.4E-29 4.9E-34 190.9 9.0 170 8-187 1-182 (331)
104 3c5h_A Glucocorticoid receptor 100.0 7.4E-29 2.5E-33 183.6 12.0 161 4-178 17-254 (255)
105 2qu8_A Putative nucleolar GTP- 100.0 2.5E-28 8.7E-33 177.9 13.9 168 4-184 27-210 (228)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 1.6E-28 5.3E-33 186.3 13.1 170 5-182 2-184 (307)
107 2wji_A Ferrous iron transport 100.0 6.6E-28 2.3E-32 167.3 14.5 153 5-177 2-163 (165)
108 3o47_A ADP-ribosylation factor 100.0 3E-28 1E-32 186.3 12.9 160 4-180 163-328 (329)
109 2dyk_A GTP-binding protein; GT 100.0 2.1E-27 7.1E-32 163.7 12.9 150 7-177 2-160 (161)
110 3dpu_A RAB family protein; roc 99.9 8.1E-28 2.8E-32 195.0 12.1 166 2-182 37-211 (535)
111 3lvq_E ARF-GAP with SH3 domain 99.9 2.9E-27 9.8E-32 190.4 14.9 163 4-183 320-488 (497)
112 1svi_A GTP-binding protein YSX 99.9 1.8E-27 6.3E-32 169.1 12.3 159 2-178 19-194 (195)
113 3iev_A GTP-binding protein ERA 99.9 4.7E-26 1.6E-30 172.7 18.4 165 2-181 6-184 (308)
114 3pqc_A Probable GTP-binding pr 99.9 1.1E-26 3.6E-31 164.9 12.8 162 3-179 20-194 (195)
115 2wjg_A FEOB, ferrous iron tran 99.9 9.2E-27 3.1E-31 164.6 11.5 159 3-181 4-171 (188)
116 3a1s_A Iron(II) transport prot 99.9 3.2E-26 1.1E-30 169.5 14.9 155 4-178 3-166 (258)
117 2gj8_A MNME, tRNA modification 99.9 5E-27 1.7E-31 164.0 9.5 153 5-179 3-166 (172)
118 2cxx_A Probable GTP-binding pr 99.9 3.1E-27 1.1E-31 167.1 8.1 157 7-181 2-186 (190)
119 1wf3_A GTP-binding protein; GT 99.9 1.6E-25 5.6E-30 169.0 15.3 162 1-179 1-173 (301)
120 3b1v_A Ferrous iron uptake tra 99.9 2.5E-26 8.6E-31 171.0 9.3 153 5-178 2-163 (272)
121 4dhe_A Probable GTP-binding pr 99.9 1.2E-25 4.1E-30 163.0 10.3 165 3-181 26-213 (223)
122 3gee_A MNME, tRNA modification 99.9 7E-25 2.4E-29 174.5 13.9 156 5-178 232-397 (476)
123 3iby_A Ferrous iron transport 99.9 3.3E-25 1.1E-29 163.8 10.1 150 7-176 2-164 (256)
124 2hjg_A GTP-binding protein ENG 99.9 2.9E-25 1E-29 175.8 10.4 160 4-179 173-349 (436)
125 3i8s_A Ferrous iron transport 99.9 1.9E-25 6.6E-30 166.8 8.2 156 5-180 2-170 (274)
126 4dcu_A GTP-binding protein ENG 99.9 8.9E-25 3E-29 174.0 11.4 160 4-179 193-369 (456)
127 3k53_A Ferrous iron transport 99.9 1.7E-24 5.8E-29 161.5 12.2 157 5-180 2-167 (271)
128 1nrj_B SR-beta, signal recogni 99.9 1.4E-25 4.6E-30 162.2 5.1 143 3-165 9-170 (218)
129 1mky_A Probable GTP-binding pr 99.9 7.1E-24 2.4E-28 168.0 13.9 153 7-179 2-166 (439)
130 1xzp_A Probable tRNA modificat 99.9 5.8E-24 2E-28 169.3 12.2 151 6-178 243-404 (482)
131 3qq5_A Small GTP-binding prote 99.9 8.6E-25 2.9E-29 171.4 6.7 157 4-180 32-197 (423)
132 1ega_A Protein (GTP-binding pr 99.9 7E-23 2.4E-27 154.8 16.9 158 5-179 7-175 (301)
133 1cip_A Protein (guanine nucleo 99.9 1.9E-23 6.4E-28 160.4 13.1 124 54-179 193-344 (353)
134 2e87_A Hypothetical protein PH 99.9 1.1E-22 3.6E-27 157.3 17.2 161 4-180 165-337 (357)
135 3sjy_A Translation initiation 99.9 1.2E-22 4E-27 159.4 16.8 171 2-182 4-195 (403)
136 3ohm_A Guanine nucleotide-bind 99.9 2.2E-23 7.4E-28 158.0 10.0 128 54-182 167-321 (327)
137 3izy_P Translation initiation 99.9 1.1E-24 3.6E-29 174.9 1.8 162 4-180 2-169 (537)
138 1s0u_A EIF-2-gamma, translatio 99.9 4.2E-22 1.4E-26 156.5 16.5 166 1-181 3-200 (408)
139 3geh_A MNME, tRNA modification 99.9 7.7E-23 2.6E-27 162.2 12.4 154 5-181 223-386 (462)
140 1mky_A Probable GTP-binding pr 99.9 4.4E-22 1.5E-26 157.8 16.3 159 5-179 179-355 (439)
141 2xtz_A Guanine nucleotide-bind 99.9 7.9E-23 2.7E-27 157.0 11.2 126 52-178 181-344 (354)
142 2xtp_A GTPase IMAP family memb 99.9 2.6E-22 9E-27 148.8 13.6 159 5-179 21-208 (260)
143 2ywe_A GTP-binding protein LEP 99.9 3E-22 1E-26 162.7 15.1 165 1-181 1-186 (600)
144 1lnz_A SPO0B-associated GTP-bi 99.9 5.5E-23 1.9E-27 157.3 10.0 159 8-182 160-333 (342)
145 1wb1_A Translation elongation 99.9 2.9E-22 9.9E-27 160.1 13.4 160 4-178 17-188 (482)
146 1zcb_A G alpha I/13; GTP-bindi 99.9 6.2E-22 2.1E-26 152.5 13.5 125 54-179 201-353 (362)
147 2hjg_A GTP-binding protein ENG 99.9 1.4E-23 4.9E-28 166.1 4.2 152 7-179 4-165 (436)
148 3cb4_D GTP-binding protein LEP 99.9 4.1E-22 1.4E-26 162.2 12.6 162 4-181 2-184 (599)
149 3lxx_A GTPase IMAP family memb 99.9 2.3E-21 8E-26 142.0 13.8 169 3-179 26-214 (239)
150 1kk1_A EIF2gamma; initiation o 99.9 2.1E-21 7.2E-26 152.7 14.3 164 3-181 7-202 (410)
151 4fid_A G protein alpha subunit 99.9 4.9E-22 1.7E-26 151.1 9.8 127 53-179 160-328 (340)
152 1azs_C GS-alpha; complex (lyas 99.9 2.3E-21 8E-26 150.5 13.5 124 54-179 217-385 (402)
153 3tr5_A RF-3, peptide chain rel 99.9 4.1E-21 1.4E-25 154.6 14.9 115 5-125 12-149 (528)
154 1jny_A EF-1-alpha, elongation 99.9 5.8E-22 2E-26 156.8 9.6 162 1-170 1-204 (435)
155 2c78_A Elongation factor TU-A; 99.9 1.4E-21 4.9E-26 153.4 11.5 167 3-180 8-213 (405)
156 3j2k_7 ERF3, eukaryotic polype 99.9 3.6E-21 1.2E-25 152.3 13.8 159 4-171 15-217 (439)
157 1g7s_A Translation initiation 99.9 7.6E-21 2.6E-25 154.8 15.4 168 4-178 3-217 (594)
158 2ged_A SR-beta, signal recogni 99.9 9.2E-22 3.1E-26 139.4 8.6 114 4-126 46-172 (193)
159 2qtf_A Protein HFLX, GTP-bindi 99.9 1.8E-20 6.2E-25 144.7 15.6 161 7-180 179-355 (364)
160 3p26_A Elongation factor 1 alp 99.9 4.1E-21 1.4E-25 153.8 11.6 156 4-168 31-227 (483)
161 1d2e_A Elongation factor TU (E 99.9 5.2E-21 1.8E-25 149.8 11.9 166 5-181 2-197 (397)
162 1zo1_I IF2, translation initia 99.9 1.2E-22 4E-27 162.0 2.4 161 4-176 2-164 (501)
163 3lxw_A GTPase IMAP family memb 99.8 2.3E-20 8E-25 137.3 14.5 167 3-179 18-208 (247)
164 1zun_B Sulfate adenylate trans 99.8 6.3E-21 2.2E-25 150.9 12.1 156 4-169 22-214 (434)
165 3t5d_A Septin-7; GTP-binding p 99.8 2.2E-21 7.5E-26 144.9 8.0 162 3-177 5-202 (274)
166 4dcu_A GTP-binding protein ENG 99.8 7.6E-22 2.6E-26 157.1 5.0 153 6-179 23-185 (456)
167 2elf_A Protein translation elo 99.8 5.8E-21 2E-25 147.8 9.6 148 8-180 23-181 (370)
168 2qag_A Septin-2, protein NEDD5 99.8 7E-22 2.4E-26 152.7 4.1 160 5-179 36-233 (361)
169 3izq_1 HBS1P, elongation facto 99.8 2.7E-20 9.2E-25 152.3 12.9 156 4-169 165-362 (611)
170 1f60_A Elongation factor EEF1A 99.8 1.5E-20 5E-25 149.5 10.9 158 1-169 1-202 (458)
171 1r5b_A Eukaryotic peptide chai 99.8 3.4E-21 1.2E-25 153.5 6.2 159 3-170 40-243 (467)
172 2aka_B Dynamin-1; fusion prote 99.8 5.3E-21 1.8E-25 144.4 6.2 158 5-176 25-250 (299)
173 3avx_A Elongation factor TS, e 99.8 6.5E-20 2.2E-24 156.3 12.6 166 4-180 294-487 (1289)
174 1pui_A ENGB, probable GTP-bind 99.8 1.4E-19 4.8E-24 129.8 11.7 162 3-179 23-199 (210)
175 3def_A T7I23.11 protein; chlor 99.8 1.8E-19 6E-24 133.7 11.6 118 5-125 35-166 (262)
176 3mca_A HBS1, elongation factor 99.8 3.7E-21 1.3E-25 157.0 2.4 165 4-178 175-396 (592)
177 2h5e_A Peptide chain release f 99.8 2.8E-18 9.5E-23 138.3 17.3 115 5-125 12-149 (529)
178 2dy1_A Elongation factor G; tr 99.8 5.1E-19 1.7E-23 146.4 13.0 116 4-123 7-139 (665)
179 1u0l_A Probable GTPase ENGC; p 99.8 4.9E-20 1.7E-24 139.2 6.4 134 21-175 32-169 (301)
180 2j69_A Bacterial dynamin-like 99.8 7.8E-19 2.7E-23 145.8 12.1 170 5-179 68-325 (695)
181 1h65_A Chloroplast outer envel 99.8 5.2E-18 1.8E-22 126.4 14.1 119 5-126 38-170 (270)
182 1dar_A EF-G, elongation factor 99.8 5.3E-18 1.8E-22 140.7 15.7 115 4-125 10-144 (691)
183 2xex_A Elongation factor G; GT 99.8 1.2E-17 4E-22 138.7 16.6 117 3-125 7-142 (693)
184 2qnr_A Septin-2, protein NEDD5 99.8 2.9E-19 9.9E-24 134.9 4.5 163 5-181 17-216 (301)
185 2rdo_7 EF-G, elongation factor 99.8 2.9E-17 9.8E-22 136.6 16.6 118 4-125 8-149 (704)
186 1udx_A The GTP-binding protein 99.8 2.1E-17 7.1E-22 129.3 14.5 159 8-182 159-328 (416)
187 1jwy_B Dynamin A GTPase domain 99.8 5.3E-19 1.8E-23 134.4 4.9 113 54-180 131-263 (315)
188 3t34_A Dynamin-related protein 99.7 7E-19 2.4E-23 136.1 4.9 153 7-172 35-254 (360)
189 2qag_C Septin-7; cell cycle, c 99.7 8.6E-18 2.9E-22 131.5 10.1 158 6-177 31-225 (418)
190 1wxq_A GTP-binding protein; st 99.7 1.3E-17 4.3E-22 130.2 10.5 84 7-90 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 3.3E-17 1.1E-21 118.3 9.8 156 5-181 29-216 (221)
192 1jal_A YCHF protein; nucleotid 99.7 4.3E-15 1.5E-19 114.0 16.6 83 7-89 3-108 (363)
193 2x2e_A Dynamin-1; nitration, h 99.7 1.5E-17 5E-22 128.4 2.6 158 5-175 30-254 (353)
194 2hf9_A Probable hydrogenase ni 99.7 1.7E-17 5.8E-22 120.3 2.5 153 5-178 37-223 (226)
195 3vqt_A RF-3, peptide chain rel 99.7 3.3E-15 1.1E-19 121.0 16.0 115 5-125 30-167 (548)
196 3p32_A Probable GTPase RV1496/ 99.7 1.5E-16 5.3E-21 122.7 6.9 107 54-179 172-284 (355)
197 1n0u_A EF-2, elongation factor 99.6 3.5E-16 1.2E-20 132.3 9.2 117 3-124 16-164 (842)
198 2qpt_A EH domain-containing pr 99.6 3.3E-16 1.1E-20 126.9 7.6 117 5-125 64-233 (550)
199 2dby_A GTP-binding protein; GD 99.6 2.4E-14 8.1E-19 110.4 15.3 83 7-89 2-111 (368)
200 2www_A Methylmalonic aciduria 99.6 4.5E-16 1.6E-20 119.7 5.1 102 54-177 167-277 (349)
201 1yrb_A ATP(GTP)binding protein 99.6 1.4E-14 4.8E-19 107.1 10.4 118 54-178 109-256 (262)
202 2p67_A LAO/AO transport system 99.6 1.5E-15 5.1E-20 116.5 4.1 104 54-178 149-260 (341)
203 3zvr_A Dynamin-1; hydrolase, D 99.5 7E-15 2.4E-19 122.0 7.1 157 6-176 51-275 (772)
204 3j25_A Tetracycline resistance 99.5 5.7E-15 2E-19 121.7 5.6 114 6-125 2-134 (638)
205 4a9a_A Ribosome-interacting GT 99.5 2.2E-13 7.6E-18 105.1 13.1 142 6-151 72-221 (376)
206 4fn5_A EF-G 1, elongation fact 99.5 2.2E-13 7.5E-18 113.7 14.1 117 5-125 12-152 (709)
207 2yv5_A YJEQ protein; hydrolase 99.5 1.6E-13 5.5E-18 103.5 10.8 98 64-175 66-165 (302)
208 3l82_B F-box only protein 4; T 99.4 3.1E-13 1E-17 95.1 5.3 105 62-180 110-224 (227)
209 2qm8_A GTPase/ATPase; G protei 99.4 4.9E-13 1.7E-17 102.3 6.4 104 54-178 148-260 (337)
210 3l2o_B F-box only protein 4; s 99.3 6.9E-12 2.4E-16 92.4 6.4 106 61-180 194-309 (312)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 4.1E-12 1.4E-16 98.5 4.7 87 5-91 21-130 (396)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 3E-10 1E-14 88.2 15.1 85 5-89 19-127 (392)
213 3h2y_A GTPase family protein; 99.1 1.4E-10 4.8E-15 89.7 6.6 98 63-177 55-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 5.6E-10 1.9E-14 86.4 5.3 98 63-177 57-160 (369)
215 2qag_B Septin-6, protein NEDD5 98.9 2.7E-08 9.2E-13 77.9 12.6 115 6-125 42-191 (427)
216 3sop_A Neuronal-specific septi 98.9 1.4E-08 4.7E-13 75.3 10.4 114 6-125 2-155 (270)
217 2j37_W Signal recognition part 98.9 1.3E-09 4.5E-14 87.2 4.5 151 5-176 100-310 (504)
218 1puj_A YLQF, conserved hypothe 98.8 3E-09 1E-13 79.4 5.2 101 58-178 3-105 (282)
219 3ec1_A YQEH GTPase; atnos1, at 98.8 3.5E-10 1.2E-14 87.5 -0.2 111 7-126 163-290 (369)
220 1tq4_A IIGP1, interferon-induc 98.8 4.7E-08 1.6E-12 76.4 11.4 169 6-181 69-255 (413)
221 3h2y_A GTPase family protein; 98.7 3.1E-10 1E-14 87.8 -3.5 111 7-126 161-289 (368)
222 1puj_A YLQF, conserved hypothe 98.5 1.2E-07 4.2E-12 70.6 5.5 57 4-65 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 9.7E-08 3.3E-12 70.4 3.8 56 7-66 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.5 3.7E-07 1.3E-11 71.8 7.0 135 5-160 99-274 (443)
225 1t9h_A YLOQ, probable GTPase E 98.5 1.6E-07 5.5E-12 70.6 4.8 93 66-171 75-169 (307)
226 2v3c_C SRP54, signal recogniti 98.4 1.7E-07 5.9E-12 73.8 4.0 64 54-124 181-252 (432)
227 3cnl_A YLQF, putative uncharac 98.4 1.2E-07 4.2E-12 69.8 3.0 94 61-176 4-98 (262)
228 1f5n_A Interferon-induced guan 98.4 4.2E-07 1.4E-11 74.0 6.0 63 4-66 36-103 (592)
229 3kl4_A SRP54, signal recogniti 98.1 6.3E-06 2.2E-10 64.8 6.3 90 54-166 180-277 (433)
230 2rcn_A Probable GTPase ENGC; Y 98.1 1.8E-05 6.1E-10 60.7 8.7 87 74-173 127-213 (358)
231 3szr_A Interferon-induced GTP- 98.0 5.1E-06 1.7E-10 68.3 4.8 23 8-30 47-69 (608)
232 1bif_A 6-phosphofructo-2-kinas 97.9 2.2E-07 7.5E-12 74.2 -4.5 110 5-121 38-160 (469)
233 1j8m_F SRP54, signal recogniti 97.9 9.8E-06 3.4E-10 60.8 4.3 91 54-168 181-280 (297)
234 3q5d_A Atlastin-1; G protein, 97.7 8.3E-05 2.8E-09 58.7 6.8 24 5-28 66-89 (447)
235 1ye8_A Protein THEP1, hypothet 97.5 7.8E-05 2.7E-09 51.6 3.5 23 7-29 1-23 (178)
236 3asz_A Uridine kinase; cytidin 97.4 9.4E-05 3.2E-09 52.3 3.4 28 1-28 1-28 (211)
237 2j41_A Guanylate kinase; GMP, 97.4 0.00011 3.9E-09 51.6 3.6 30 1-30 1-30 (207)
238 1qf9_A UMP/CMP kinase, protein 97.4 0.00014 4.9E-09 50.4 3.9 28 1-28 1-28 (194)
239 1kgd_A CASK, peripheral plasma 97.4 0.00011 3.7E-09 50.8 3.3 22 8-29 7-28 (180)
240 1y63_A LMAJ004144AAA protein; 97.4 0.00013 4.5E-09 50.6 3.7 29 1-29 5-33 (184)
241 4eun_A Thermoresistant glucoki 97.4 0.00013 4.4E-09 51.3 3.6 27 2-28 25-51 (200)
242 2xxa_A Signal recognition part 97.3 0.00049 1.7E-08 54.2 7.0 64 54-124 184-254 (433)
243 3ney_A 55 kDa erythrocyte memb 97.3 0.00018 6E-09 50.6 3.8 25 5-29 18-42 (197)
244 1lvg_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 51.1 3.3 21 8-28 6-26 (198)
245 1nn5_A Similar to deoxythymidy 97.3 0.00016 5.6E-09 51.1 3.4 28 1-28 4-31 (215)
246 1knq_A Gluconate kinase; ALFA/ 97.2 0.0003 1E-08 48.1 4.1 24 5-28 7-30 (175)
247 1zp6_A Hypothetical protein AT 97.2 0.00023 7.7E-09 49.4 3.5 24 6-29 9-32 (191)
248 1t9h_A YLOQ, probable GTPase E 97.2 0.00013 4.6E-09 54.7 2.4 22 8-29 175-196 (307)
249 3a00_A Guanylate kinase, GMP k 97.2 0.00021 7.3E-09 49.6 3.2 21 9-29 4-24 (186)
250 4gp7_A Metallophosphoesterase; 97.2 0.00017 5.9E-09 49.4 2.6 20 8-27 11-30 (171)
251 1ex7_A Guanylate kinase; subst 97.2 0.00023 8E-09 49.5 3.3 21 9-29 4-24 (186)
252 3tr0_A Guanylate kinase, GMP k 97.2 0.00023 7.7E-09 50.0 3.2 22 8-29 9-30 (205)
253 2yv5_A YJEQ protein; hydrolase 97.2 0.00078 2.7E-08 50.5 6.0 20 8-27 167-186 (302)
254 1s96_A Guanylate kinase, GMP k 97.2 0.00026 8.8E-09 50.6 3.2 22 8-29 18-39 (219)
255 1znw_A Guanylate kinase, GMP k 97.1 0.00029 9.9E-09 49.8 3.2 22 8-29 22-43 (207)
256 1z6g_A Guanylate kinase; struc 97.1 0.00029 9.9E-09 50.3 3.2 22 8-29 25-46 (218)
257 3tau_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 49.8 3.2 23 7-29 9-31 (208)
258 3c8u_A Fructokinase; YP_612366 97.1 0.0004 1.4E-08 49.0 3.6 24 5-28 21-44 (208)
259 2qor_A Guanylate kinase; phosp 97.1 0.00036 1.2E-08 49.2 3.2 24 6-29 12-35 (204)
260 3vaa_A Shikimate kinase, SK; s 97.1 0.00042 1.4E-08 48.6 3.6 24 5-28 24-47 (199)
261 1ly1_A Polynucleotide kinase; 97.1 0.00046 1.6E-08 47.3 3.7 22 7-28 3-24 (181)
262 1ukz_A Uridylate kinase; trans 97.0 0.00056 1.9E-08 47.9 4.1 26 3-28 12-37 (203)
263 3lw7_A Adenylate kinase relate 97.0 0.00039 1.3E-08 47.3 3.1 20 7-26 2-21 (179)
264 1kag_A SKI, shikimate kinase I 97.0 0.00043 1.5E-08 47.2 3.2 23 7-29 5-27 (173)
265 1htw_A HI0065; nucleotide-bind 97.0 0.00046 1.6E-08 46.7 3.2 23 8-30 35-57 (158)
266 3kb2_A SPBC2 prophage-derived 97.0 0.00044 1.5E-08 47.0 3.1 22 8-29 3-24 (173)
267 2cdn_A Adenylate kinase; phosp 97.0 0.00057 1.9E-08 47.9 3.7 25 4-28 18-42 (201)
268 2bdt_A BH3686; alpha-beta prot 97.0 0.00045 1.6E-08 47.9 3.2 21 8-28 4-24 (189)
269 3fb4_A Adenylate kinase; psych 97.0 0.00045 1.6E-08 48.9 3.2 22 7-28 1-22 (216)
270 3dl0_A Adenylate kinase; phosp 97.0 0.00048 1.6E-08 48.8 3.2 22 7-28 1-22 (216)
271 3cm0_A Adenylate kinase; ATP-b 97.0 0.00061 2.1E-08 47.0 3.7 24 5-28 3-26 (186)
272 2bbw_A Adenylate kinase 4, AK4 97.0 0.00054 1.9E-08 49.7 3.5 22 6-27 27-48 (246)
273 3tlx_A Adenylate kinase 2; str 97.0 0.0007 2.4E-08 49.1 4.0 25 4-28 27-51 (243)
274 3sr0_A Adenylate kinase; phosp 96.9 0.00058 2E-08 48.3 3.4 22 7-28 1-22 (206)
275 3tif_A Uncharacterized ABC tra 96.9 0.00048 1.7E-08 49.7 3.0 22 8-29 33-54 (235)
276 2v54_A DTMP kinase, thymidylat 96.9 0.00071 2.4E-08 47.3 3.8 25 5-29 3-27 (204)
277 1cke_A CK, MSSA, protein (cyti 96.9 0.00065 2.2E-08 48.5 3.6 23 6-28 5-27 (227)
278 3uie_A Adenylyl-sulfate kinase 96.9 0.00052 1.8E-08 48.1 2.9 24 5-28 24-47 (200)
279 1qhx_A CPT, protein (chloramph 96.9 0.00059 2E-08 46.7 3.1 23 7-29 4-26 (178)
280 2i3b_A HCR-ntpase, human cance 96.9 0.00058 2E-08 47.6 3.0 21 8-28 3-23 (189)
281 3n70_A Transport activator; si 96.9 0.001 3.4E-08 44.2 4.1 26 5-30 23-48 (145)
282 2plr_A DTMP kinase, probable t 96.9 0.00081 2.8E-08 47.3 3.9 23 6-28 4-26 (213)
283 3iij_A Coilin-interacting nucl 96.9 0.00069 2.3E-08 46.6 3.4 23 6-28 11-33 (180)
284 2jaq_A Deoxyguanosine kinase; 96.9 0.0007 2.4E-08 47.3 3.5 21 8-28 2-22 (205)
285 1uj2_A Uridine-cytidine kinase 96.9 0.0007 2.4E-08 49.3 3.5 27 2-28 18-44 (252)
286 3t61_A Gluconokinase; PSI-biol 96.9 0.00064 2.2E-08 47.7 3.2 22 7-28 19-40 (202)
287 2rhm_A Putative kinase; P-loop 96.9 0.00076 2.6E-08 46.7 3.6 24 5-28 4-27 (193)
288 1aky_A Adenylate kinase; ATP:A 96.9 0.00077 2.6E-08 47.9 3.6 24 5-28 3-26 (220)
289 1gvn_B Zeta; postsegregational 96.9 0.00086 2.9E-08 49.9 3.9 25 4-28 31-55 (287)
290 2vli_A Antibiotic resistance p 96.9 0.00045 1.5E-08 47.5 2.2 24 5-28 4-27 (183)
291 2rcn_A Probable GTPase ENGC; Y 96.8 0.00063 2.1E-08 52.2 3.1 23 8-30 217-239 (358)
292 3ec2_A DNA replication protein 96.8 0.00074 2.5E-08 46.4 3.3 24 6-29 38-61 (180)
293 2onk_A Molybdate/tungstate ABC 96.8 0.0007 2.4E-08 49.1 3.2 23 8-30 26-48 (240)
294 2pcj_A ABC transporter, lipopr 96.8 0.00058 2E-08 49.0 2.8 22 8-29 32-53 (224)
295 1tev_A UMP-CMP kinase; ploop, 96.8 0.00089 3.1E-08 46.4 3.7 23 6-28 3-25 (196)
296 1via_A Shikimate kinase; struc 96.8 0.00067 2.3E-08 46.4 2.9 21 8-28 6-26 (175)
297 1kht_A Adenylate kinase; phosp 96.8 0.00083 2.8E-08 46.4 3.5 22 7-28 4-25 (192)
298 1np6_A Molybdopterin-guanine d 96.8 0.00078 2.7E-08 46.3 3.2 23 7-29 7-29 (174)
299 1nks_A Adenylate kinase; therm 96.8 0.00081 2.8E-08 46.5 3.3 22 7-28 2-23 (194)
300 1zd8_A GTP:AMP phosphotransfer 96.8 0.00069 2.4E-08 48.5 3.0 24 5-28 6-29 (227)
301 1e4v_A Adenylate kinase; trans 96.8 0.00074 2.5E-08 47.8 3.1 22 7-28 1-22 (214)
302 1sgw_A Putative ABC transporte 96.8 0.00074 2.5E-08 48.0 3.1 22 8-29 37-58 (214)
303 2if2_A Dephospho-COA kinase; a 96.8 0.00079 2.7E-08 47.2 3.2 22 7-28 2-23 (204)
304 2eyu_A Twitching motility prot 96.8 0.00076 2.6E-08 49.5 3.2 21 8-28 27-47 (261)
305 1b0u_A Histidine permease; ABC 96.8 0.00074 2.5E-08 49.6 3.1 22 8-29 34-55 (262)
306 2v9p_A Replication protein E1; 96.8 0.00083 2.8E-08 50.4 3.4 22 7-28 127-148 (305)
307 3gfo_A Cobalt import ATP-bindi 96.8 0.00074 2.5E-08 49.9 3.1 23 8-30 36-58 (275)
308 2cbz_A Multidrug resistance-as 96.8 0.00084 2.9E-08 48.5 3.3 22 8-29 33-54 (237)
309 3trf_A Shikimate kinase, SK; a 96.8 0.00088 3E-08 46.2 3.3 22 7-28 6-27 (185)
310 2wwf_A Thymidilate kinase, put 96.8 0.00094 3.2E-08 47.0 3.5 24 5-28 9-32 (212)
311 1vht_A Dephospho-COA kinase; s 96.8 0.001 3.6E-08 47.2 3.7 24 5-28 3-26 (218)
312 1zak_A Adenylate kinase; ATP:A 96.8 0.00073 2.5E-08 48.1 2.9 24 5-28 4-27 (222)
313 2ehv_A Hypothetical protein PH 96.8 0.00086 2.9E-08 48.4 3.2 20 8-27 32-51 (251)
314 1g6h_A High-affinity branched- 96.8 0.00082 2.8E-08 49.2 3.0 23 8-30 35-57 (257)
315 2pze_A Cystic fibrosis transme 96.8 0.00086 2.9E-08 48.2 3.1 22 8-29 36-57 (229)
316 1mv5_A LMRA, multidrug resista 96.7 0.00095 3.2E-08 48.4 3.3 22 8-29 30-51 (243)
317 4g1u_C Hemin import ATP-bindin 96.7 0.00081 2.8E-08 49.5 3.0 23 8-30 39-61 (266)
318 2ff7_A Alpha-hemolysin translo 96.7 0.00094 3.2E-08 48.6 3.3 22 8-29 37-58 (247)
319 2olj_A Amino acid ABC transpor 96.7 0.00087 3E-08 49.2 3.1 22 8-29 52-73 (263)
320 3b85_A Phosphate starvation-in 96.7 0.00074 2.5E-08 47.8 2.6 22 8-29 24-45 (208)
321 2jeo_A Uridine-cytidine kinase 96.7 0.0012 4.1E-08 47.8 3.8 24 5-28 24-47 (245)
322 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 44.9 3.3 22 7-28 1-22 (168)
323 1ji0_A ABC transporter; ATP bi 96.7 0.0009 3.1E-08 48.5 3.0 22 8-29 34-55 (240)
324 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00096 3.3E-08 48.6 3.2 22 8-29 31-52 (250)
325 3aez_A Pantothenate kinase; tr 96.7 0.0014 4.8E-08 49.4 4.1 25 4-28 88-112 (312)
326 3be4_A Adenylate kinase; malar 96.7 0.001 3.5E-08 47.2 3.2 24 5-28 4-27 (217)
327 2qi9_C Vitamin B12 import ATP- 96.7 0.00096 3.3E-08 48.6 3.1 22 8-29 28-49 (249)
328 1jjv_A Dephospho-COA kinase; P 96.7 0.0012 4.2E-08 46.3 3.6 22 7-28 3-24 (206)
329 1vpl_A ABC transporter, ATP-bi 96.7 0.00096 3.3E-08 48.8 3.1 22 8-29 43-64 (256)
330 3lnc_A Guanylate kinase, GMP k 96.7 0.00064 2.2E-08 48.8 2.1 23 7-29 28-51 (231)
331 2qt1_A Nicotinamide riboside k 96.7 0.0014 4.7E-08 46.1 3.8 25 5-29 20-44 (207)
332 2zu0_C Probable ATP-dependent 96.7 0.0011 3.6E-08 48.9 3.2 22 8-29 48-69 (267)
333 1jbk_A CLPB protein; beta barr 96.7 0.0012 4.3E-08 45.2 3.5 24 6-29 43-66 (195)
334 1uf9_A TT1252 protein; P-loop, 96.7 0.0013 4.4E-08 45.9 3.6 26 4-29 6-31 (203)
335 2ghi_A Transport protein; mult 96.7 0.0011 3.7E-08 48.6 3.3 22 8-29 48-69 (260)
336 2c95_A Adenylate kinase 1; tra 96.7 0.0012 4E-08 45.9 3.3 24 5-28 8-31 (196)
337 1u0l_A Probable GTPase ENGC; p 96.7 0.0012 4.2E-08 49.4 3.6 23 8-30 171-193 (301)
338 1odf_A YGR205W, hypothetical 3 96.7 0.0016 5.3E-08 48.6 4.1 24 4-27 29-52 (290)
339 4a74_A DNA repair and recombin 96.7 0.00098 3.4E-08 47.5 2.9 22 8-29 27-48 (231)
340 2p5t_B PEZT; postsegregational 96.7 0.001 3.4E-08 48.5 3.0 24 5-28 31-54 (253)
341 2ixe_A Antigen peptide transpo 96.7 0.001 3.5E-08 49.1 3.0 23 8-30 47-69 (271)
342 1rz3_A Hypothetical protein rb 96.7 0.0016 5.5E-08 45.7 3.9 25 4-28 20-44 (201)
343 2xb4_A Adenylate kinase; ATP-b 96.7 0.0013 4.5E-08 47.0 3.5 22 7-28 1-22 (223)
344 2ihy_A ABC transporter, ATP-bi 96.6 0.0012 4.1E-08 48.9 3.3 23 8-30 49-71 (279)
345 2nq2_C Hypothetical ABC transp 96.6 0.0011 3.8E-08 48.4 3.0 23 8-30 33-55 (253)
346 3tqc_A Pantothenate kinase; bi 96.6 0.0018 6E-08 49.0 4.1 25 4-28 90-114 (321)
347 2x8a_A Nuclear valosin-contain 96.6 0.0012 4.2E-08 48.7 3.2 22 8-29 46-67 (274)
348 1ak2_A Adenylate kinase isoenz 96.6 0.0016 5.4E-08 46.8 3.7 24 5-28 15-38 (233)
349 2yz2_A Putative ABC transporte 96.6 0.0012 4.1E-08 48.6 3.0 22 8-29 35-56 (266)
350 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0016 5.4E-08 47.7 3.6 23 6-28 4-26 (260)
351 2f1r_A Molybdopterin-guanine d 96.6 0.00061 2.1E-08 46.7 1.2 22 8-29 4-25 (171)
352 2yvu_A Probable adenylyl-sulfa 96.6 0.0021 7.1E-08 44.4 4.0 24 5-28 12-35 (186)
353 4e22_A Cytidylate kinase; P-lo 96.6 0.0017 5.9E-08 47.3 3.7 21 7-27 28-48 (252)
354 2kjq_A DNAA-related protein; s 96.6 0.001 3.5E-08 44.5 2.3 22 8-29 38-59 (149)
355 1ixz_A ATP-dependent metallopr 96.6 0.0014 4.9E-08 47.6 3.3 22 8-29 51-72 (254)
356 1lw7_A Transcriptional regulat 96.6 0.0012 4E-08 50.9 2.9 24 6-29 170-193 (365)
357 1xjc_A MOBB protein homolog; s 96.6 0.0016 5.5E-08 44.5 3.3 23 6-28 4-26 (169)
358 2pjz_A Hypothetical protein ST 96.5 0.002 6.7E-08 47.4 3.9 23 8-30 32-54 (263)
359 2pbr_A DTMP kinase, thymidylat 96.5 0.0017 6E-08 44.9 3.4 21 8-28 2-22 (195)
360 2bwj_A Adenylate kinase 5; pho 96.5 0.0015 5.1E-08 45.5 2.9 23 6-28 12-34 (199)
361 3jvv_A Twitching mobility prot 96.5 0.0016 5.3E-08 50.1 3.2 21 8-28 125-145 (356)
362 2ze6_A Isopentenyl transferase 96.5 0.0017 5.9E-08 47.3 3.3 21 8-28 3-23 (253)
363 1rj9_A FTSY, signal recognitio 96.5 0.0016 5.6E-08 48.8 3.2 22 6-27 102-123 (304)
364 2z0h_A DTMP kinase, thymidylat 96.5 0.0021 7E-08 44.6 3.4 21 8-28 2-22 (197)
365 3umf_A Adenylate kinase; rossm 96.5 0.0019 6.5E-08 46.0 3.2 20 9-28 32-51 (217)
366 2p65_A Hypothetical protein PF 96.5 0.0015 5.2E-08 44.6 2.7 24 6-29 43-66 (187)
367 1e6c_A Shikimate kinase; phosp 96.5 0.0019 6.5E-08 43.9 3.1 22 7-28 3-24 (173)
368 2iyv_A Shikimate kinase, SK; t 96.4 0.0019 6.5E-08 44.4 3.0 21 8-28 4-24 (184)
369 2f6r_A COA synthase, bifunctio 96.4 0.0023 7.8E-08 47.5 3.6 25 4-28 73-97 (281)
370 3nh6_A ATP-binding cassette SU 96.4 0.0012 4.1E-08 49.6 2.1 22 8-29 82-103 (306)
371 3b9q_A Chloroplast SRP recepto 96.4 0.0031 1.1E-07 47.3 4.3 23 6-28 100-122 (302)
372 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0017 5.9E-08 49.8 2.9 23 8-30 32-54 (359)
373 3r20_A Cytidylate kinase; stru 96.4 0.0022 7.6E-08 46.2 3.3 24 5-28 8-31 (233)
374 1iy2_A ATP-dependent metallopr 96.4 0.0021 7.2E-08 47.4 3.3 22 8-29 75-96 (278)
375 1gtv_A TMK, thymidylate kinase 96.4 0.00072 2.5E-08 47.7 0.7 21 8-28 2-22 (214)
376 1z47_A CYSA, putative ABC-tran 96.4 0.002 6.9E-08 49.4 3.2 23 8-30 43-65 (355)
377 2bbs_A Cystic fibrosis transme 96.4 0.0019 6.5E-08 48.1 3.0 22 8-29 66-87 (290)
378 2ewv_A Twitching motility prot 96.4 0.002 6.8E-08 49.8 3.1 21 8-28 138-158 (372)
379 1zuh_A Shikimate kinase; alpha 96.4 0.0025 8.5E-08 43.2 3.3 22 7-28 8-29 (168)
380 3e70_C DPA, signal recognition 96.4 0.0031 1.1E-07 47.8 4.1 24 5-28 128-151 (328)
381 1sq5_A Pantothenate kinase; P- 96.4 0.0026 9E-08 47.8 3.7 24 5-28 79-102 (308)
382 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0023 7.8E-08 45.5 3.2 21 8-28 25-45 (235)
383 2yyz_A Sugar ABC transporter, 96.4 0.0022 7.4E-08 49.3 3.2 22 8-29 31-52 (359)
384 3bos_A Putative DNA replicatio 96.4 0.0025 8.7E-08 45.5 3.4 24 6-29 52-75 (242)
385 3tui_C Methionine import ATP-b 96.4 0.0022 7.7E-08 49.2 3.2 23 8-30 56-78 (366)
386 1in4_A RUVB, holliday junction 96.4 0.0022 7.5E-08 48.7 3.2 23 7-29 52-74 (334)
387 2it1_A 362AA long hypothetical 96.3 0.0023 7.7E-08 49.2 3.2 23 8-30 31-53 (362)
388 3rlf_A Maltose/maltodextrin im 96.3 0.0023 7.7E-08 49.5 3.2 23 8-30 31-53 (381)
389 2gza_A Type IV secretion syste 96.3 0.0019 6.7E-08 49.6 2.8 23 8-30 177-199 (361)
390 1lv7_A FTSH; alpha/beta domain 96.3 0.0027 9.2E-08 46.2 3.5 24 6-29 45-68 (257)
391 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.002 6.8E-08 48.9 2.8 23 8-30 173-195 (330)
392 3kta_A Chromosome segregation 96.3 0.0023 7.9E-08 43.9 2.9 21 8-28 28-48 (182)
393 1g29_1 MALK, maltose transport 96.3 0.0024 8.3E-08 49.3 3.2 23 8-30 31-53 (372)
394 1v43_A Sugar-binding transport 96.3 0.0025 8.5E-08 49.2 3.2 22 8-29 39-60 (372)
395 2pez_A Bifunctional 3'-phospho 96.3 0.0035 1.2E-07 42.9 3.8 23 6-28 5-27 (179)
396 2w58_A DNAI, primosome compone 96.3 0.0031 1.1E-07 44.0 3.4 23 7-29 55-77 (202)
397 1p9r_A General secretion pathw 96.3 0.0025 8.6E-08 50.0 3.2 22 8-29 169-190 (418)
398 4eaq_A DTMP kinase, thymidylat 96.3 0.0041 1.4E-07 44.6 4.1 25 5-29 25-49 (229)
399 1a7j_A Phosphoribulokinase; tr 96.2 0.0017 5.8E-08 48.4 1.9 27 1-28 1-27 (290)
400 2og2_A Putative signal recogni 96.2 0.0044 1.5E-07 47.6 4.2 23 6-28 157-179 (359)
401 2vp4_A Deoxynucleoside kinase; 96.2 0.0032 1.1E-07 45.2 3.2 25 5-29 19-43 (230)
402 1m7g_A Adenylylsulfate kinase; 96.2 0.0044 1.5E-07 43.7 3.8 24 5-28 24-47 (211)
403 2cvh_A DNA repair and recombin 96.2 0.0034 1.2E-07 44.3 3.2 21 8-28 22-42 (220)
404 3d31_A Sulfate/molybdate ABC t 96.1 0.0021 7.1E-08 49.2 2.1 22 8-29 28-49 (348)
405 2oap_1 GSPE-2, type II secreti 96.1 0.0029 1E-07 50.9 3.0 23 8-30 262-284 (511)
406 1n0w_A DNA repair protein RAD5 96.1 0.0036 1.2E-07 44.9 3.3 22 8-29 26-47 (243)
407 2yhs_A FTSY, cell division pro 96.1 0.0048 1.6E-07 49.3 4.1 23 6-28 293-315 (503)
408 1cr0_A DNA primase/helicase; R 96.1 0.0031 1.1E-07 46.9 2.9 22 8-29 37-58 (296)
409 1njg_A DNA polymerase III subu 96.1 0.0037 1.3E-07 44.4 3.2 21 8-28 47-67 (250)
410 3nwj_A ATSK2; P loop, shikimat 96.1 0.0032 1.1E-07 45.9 2.8 22 7-28 49-70 (250)
411 1ltq_A Polynucleotide kinase; 96.1 0.0044 1.5E-07 46.1 3.7 22 7-28 3-24 (301)
412 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0043 1.5E-07 41.4 3.2 19 9-27 26-44 (149)
413 2chg_A Replication factor C sm 96.1 0.0039 1.3E-07 43.7 3.2 22 8-29 40-61 (226)
414 3gd7_A Fusion complex of cysti 96.1 0.0032 1.1E-07 48.9 2.9 22 8-29 49-70 (390)
415 1tue_A Replication protein E1; 96.1 0.0033 1.1E-07 44.3 2.7 22 7-28 59-80 (212)
416 3h4m_A Proteasome-activating n 96.1 0.0043 1.5E-07 45.8 3.4 24 6-29 51-74 (285)
417 3t15_A Ribulose bisphosphate c 96.0 0.0041 1.4E-07 46.3 3.3 25 5-29 35-59 (293)
418 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0032 1.1E-07 50.0 2.7 22 8-29 140-161 (460)
419 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0044 1.5E-07 45.0 3.3 24 6-29 39-62 (262)
420 3b9p_A CG5977-PA, isoform A; A 96.0 0.0045 1.5E-07 46.0 3.4 24 6-29 54-77 (297)
421 3crm_A TRNA delta(2)-isopenten 96.0 0.0057 2E-07 46.2 3.9 27 1-28 1-27 (323)
422 3d3q_A TRNA delta(2)-isopenten 96.0 0.0052 1.8E-07 46.7 3.6 22 7-28 8-29 (340)
423 2obl_A ESCN; ATPase, hydrolase 96.0 0.0043 1.5E-07 47.5 3.2 23 8-30 73-95 (347)
424 1nij_A Hypothetical protein YJ 96.0 0.0031 1.1E-07 47.6 2.3 24 7-30 5-28 (318)
425 1oxx_K GLCV, glucose, ABC tran 96.0 0.0021 7.1E-08 49.3 1.3 23 8-30 33-55 (353)
426 3syl_A Protein CBBX; photosynt 96.0 0.0056 1.9E-07 45.7 3.7 23 6-28 67-89 (309)
427 2grj_A Dephospho-COA kinase; T 95.9 0.0059 2E-07 42.6 3.4 24 6-29 12-35 (192)
428 3cf0_A Transitional endoplasmi 95.9 0.0048 1.6E-07 46.1 3.1 23 7-29 50-72 (301)
429 1svm_A Large T antigen; AAA+ f 95.9 0.0051 1.7E-07 47.6 3.2 23 6-28 169-191 (377)
430 1l8q_A Chromosomal replication 95.9 0.0051 1.7E-07 46.4 3.1 23 7-29 38-60 (324)
431 3zvl_A Bifunctional polynucleo 95.9 0.007 2.4E-07 47.4 4.0 25 5-29 257-281 (416)
432 3ake_A Cytidylate kinase; CMP 95.8 0.0078 2.7E-07 42.0 3.8 21 8-28 4-24 (208)
433 1d2n_A N-ethylmaleimide-sensit 95.8 0.0079 2.7E-07 44.1 4.0 25 5-29 63-87 (272)
434 1q3t_A Cytidylate kinase; nucl 95.8 0.0073 2.5E-07 43.4 3.6 24 5-28 15-38 (236)
435 3ld9_A DTMP kinase, thymidylat 95.8 0.0083 2.8E-07 42.9 3.8 28 1-28 16-43 (223)
436 1nlf_A Regulatory protein REPA 95.8 0.0055 1.9E-07 45.2 2.9 21 8-28 32-52 (279)
437 2qby_A CDC6 homolog 1, cell di 95.7 0.0057 1.9E-07 46.8 3.0 24 6-29 45-68 (386)
438 2dpy_A FLII, flagellum-specifi 95.7 0.0063 2.2E-07 48.0 3.2 23 8-30 159-181 (438)
439 2qmh_A HPR kinase/phosphorylas 95.7 0.007 2.4E-07 42.4 3.0 24 7-30 35-58 (205)
440 1ofh_A ATP-dependent HSL prote 95.7 0.0069 2.4E-07 45.0 3.3 24 6-29 50-73 (310)
441 2dr3_A UPF0273 protein PH0284; 95.7 0.0064 2.2E-07 43.6 2.9 21 8-28 25-45 (247)
442 2ga8_A Hypothetical 39.9 kDa p 95.7 0.011 3.7E-07 45.2 4.2 23 5-27 23-45 (359)
443 1yqt_A RNAse L inhibitor; ATP- 95.7 0.01 3.4E-07 48.2 4.3 23 8-30 49-71 (538)
444 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0069 2.4E-07 46.6 3.2 19 9-27 26-44 (365)
445 3euj_A Chromosome partition pr 95.7 0.0069 2.4E-07 48.3 3.3 21 8-28 31-51 (483)
446 1fnn_A CDC6P, cell division co 95.7 0.0078 2.7E-07 46.2 3.5 22 8-29 46-67 (389)
447 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0081 2.8E-07 45.4 3.4 23 7-29 46-68 (322)
448 2px0_A Flagellar biosynthesis 95.6 0.0069 2.4E-07 45.2 2.9 22 6-27 105-126 (296)
449 3eie_A Vacuolar protein sortin 95.6 0.0081 2.8E-07 45.3 3.4 24 6-29 51-74 (322)
450 4fcw_A Chaperone protein CLPB; 95.6 0.0088 3E-07 44.6 3.5 23 7-29 48-70 (311)
451 3co5_A Putative two-component 95.6 0.0037 1.3E-07 41.3 1.2 24 6-29 27-50 (143)
452 1sxj_E Activator 1 40 kDa subu 95.6 0.0063 2.2E-07 46.3 2.7 21 8-28 38-58 (354)
453 4ido_A Atlastin-1; GTPase, GTP 95.6 0.029 9.8E-07 44.3 6.4 23 5-27 66-88 (457)
454 3gmt_A Adenylate kinase; ssgci 95.6 0.0097 3.3E-07 42.7 3.5 23 6-28 8-30 (230)
455 1vma_A Cell division protein F 95.6 0.013 4.4E-07 44.0 4.3 22 6-27 104-125 (306)
456 1p5z_B DCK, deoxycytidine kina 95.6 0.006 2.1E-07 44.6 2.4 25 5-29 23-47 (263)
457 3b60_A Lipid A export ATP-bind 95.5 0.0072 2.5E-07 49.5 3.0 22 8-29 371-392 (582)
458 4b4t_K 26S protease regulatory 95.5 0.0084 2.9E-07 47.1 3.2 23 7-29 207-229 (428)
459 1sxj_C Activator 1 40 kDa subu 95.5 0.0083 2.8E-07 45.6 3.1 22 8-29 48-69 (340)
460 1c9k_A COBU, adenosylcobinamid 95.5 0.0086 2.9E-07 41.3 2.9 21 9-29 2-22 (180)
461 2ocp_A DGK, deoxyguanosine kin 95.5 0.01 3.5E-07 42.7 3.5 24 6-29 2-25 (241)
462 2qen_A Walker-type ATPase; unk 95.5 0.0091 3.1E-07 45.1 3.3 22 8-29 33-54 (350)
463 3ozx_A RNAse L inhibitor; ATP 95.5 0.012 4E-07 47.8 3.9 23 8-30 27-49 (538)
464 3tqf_A HPR(Ser) kinase; transf 95.5 0.011 3.9E-07 40.4 3.3 24 7-30 17-40 (181)
465 4b4t_M 26S protease regulatory 95.5 0.0094 3.2E-07 46.9 3.3 24 6-29 215-238 (434)
466 3u61_B DNA polymerase accessor 95.4 0.025 8.4E-07 42.5 5.5 43 79-122 105-148 (324)
467 3b5x_A Lipid A export ATP-bind 95.4 0.012 4E-07 48.2 3.9 22 8-29 371-392 (582)
468 3j16_B RLI1P; ribosome recycli 95.4 0.013 4.3E-07 48.3 4.1 22 8-29 105-126 (608)
469 3qks_A DNA double-strand break 95.4 0.011 3.6E-07 41.6 3.2 19 9-27 26-44 (203)
470 3pxg_A Negative regulator of g 95.4 0.0092 3.1E-07 47.5 3.1 23 6-28 201-223 (468)
471 1pzn_A RAD51, DNA repair and r 95.4 0.0087 3E-07 45.8 2.9 23 8-30 133-155 (349)
472 4b4t_L 26S protease subunit RP 95.4 0.01 3.4E-07 46.8 3.3 24 6-29 215-238 (437)
473 2h92_A Cytidylate kinase; ross 95.4 0.0094 3.2E-07 42.1 2.9 23 6-28 3-25 (219)
474 1sxj_D Activator 1 41 kDa subu 95.4 0.01 3.4E-07 45.1 3.2 22 8-29 60-81 (353)
475 2r62_A Cell division protease 95.4 0.0044 1.5E-07 45.3 1.1 22 8-29 46-67 (268)
476 2v1u_A Cell division control p 95.3 0.01 3.5E-07 45.5 3.2 25 5-29 43-67 (387)
477 2yl4_A ATP-binding cassette SU 95.3 0.0077 2.6E-07 49.5 2.5 22 8-29 372-393 (595)
478 3uk6_A RUVB-like 2; hexameric 95.3 0.01 3.5E-07 45.4 3.1 23 7-29 71-93 (368)
479 2fna_A Conserved hypothetical 95.3 0.0097 3.3E-07 45.0 2.9 22 8-29 32-53 (357)
480 2qp9_X Vacuolar protein sortin 95.3 0.011 3.8E-07 45.3 3.2 23 7-29 85-107 (355)
481 3foz_A TRNA delta(2)-isopenten 95.3 0.016 5.6E-07 43.4 4.0 23 6-28 10-32 (316)
482 3qf4_B Uncharacterized ABC tra 95.3 0.0085 2.9E-07 49.2 2.7 22 8-29 383-404 (598)
483 3bk7_A ABC transporter ATP-bin 95.3 0.015 5.3E-07 47.8 4.1 23 8-30 119-141 (607)
484 3pfi_A Holliday junction ATP-d 95.3 0.011 3.9E-07 44.6 3.2 24 6-29 55-78 (338)
485 2bjv_A PSP operon transcriptio 95.3 0.012 4.2E-07 42.9 3.2 25 6-30 29-53 (265)
486 2qgz_A Helicase loader, putati 95.3 0.013 4.5E-07 44.0 3.4 24 6-29 152-175 (308)
487 4b4t_J 26S protease regulatory 95.2 0.012 4.2E-07 45.7 3.2 24 6-29 182-205 (405)
488 3d8b_A Fidgetin-like protein 1 95.2 0.013 4.6E-07 44.8 3.5 24 6-29 117-140 (357)
489 3ozx_A RNAse L inhibitor; ATP 95.2 0.011 3.8E-07 47.9 3.1 23 8-30 296-318 (538)
490 1yqt_A RNAse L inhibitor; ATP- 95.2 0.013 4.5E-07 47.5 3.5 23 8-30 314-336 (538)
491 3exa_A TRNA delta(2)-isopenten 95.2 0.014 4.9E-07 43.8 3.4 22 8-29 5-26 (322)
492 3bk7_A ABC transporter ATP-bin 95.2 0.014 4.7E-07 48.1 3.5 23 8-30 384-406 (607)
493 2qby_B CDC6 homolog 3, cell di 95.1 0.013 4.4E-07 45.0 3.2 24 6-29 45-68 (384)
494 4a82_A Cystic fibrosis transme 95.1 0.0074 2.5E-07 49.4 1.9 22 8-29 369-390 (578)
495 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.9E-07 44.2 3.3 23 7-29 41-63 (339)
496 2z4s_A Chromosomal replication 95.1 0.013 4.3E-07 46.3 3.1 22 7-28 131-152 (440)
497 1um8_A ATP-dependent CLP prote 95.1 0.014 4.6E-07 45.0 3.3 24 6-29 72-95 (376)
498 2ce7_A Cell division protein F 95.1 0.014 4.6E-07 46.6 3.3 23 7-29 50-72 (476)
499 2dhr_A FTSH; AAA+ protein, hex 95.1 0.013 4.5E-07 47.0 3.1 22 8-29 66-87 (499)
500 3m6a_A ATP-dependent protease 95.1 0.014 4.9E-07 47.3 3.4 21 8-28 110-130 (543)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.8e-41 Score=244.93 Aligned_cols=165 Identities=30% Similarity=0.513 Sum_probs=139.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.+||+|+|.+|||||||+++|..+.+...+.||.+. .......+++..+.++||||+|+++|.+++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 36789999999999999999999999999999999874 45667778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+.+. ++.+++++++..+++ +|+||||+
T Consensus 91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk 158 (216)
T 4dkx_A 91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK 158 (216)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence 99999999999999 67777776554 7899999999999987664 899999999999998 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
+|.||+++|..|++.+...
T Consensus 159 tg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp TTBSHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999988643
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-38 Score=229.41 Aligned_cols=196 Identities=79% Similarity=1.243 Sum_probs=154.0
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|+..+.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 77788999999999999999999999999988888899888887777788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+++|||++++.++..+...|+..+....++.|+++|+||+|+.+....... ....+..+++..++..++..+|+++||
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999855899999888789999999999999765421000 111347788889999988668999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCcchHH---hhccccCCcccC
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPKNKKK---KKRKAQKACSIL 198 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~~~~~c~~~ 198 (198)
++|.|++++|+++++.+.....++.. .+++++..|+++
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 202 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA 202 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence 99999999999999999877665542 223334467764
No 3
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.1e-36 Score=212.15 Aligned_cols=172 Identities=28% Similarity=0.419 Sum_probs=151.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|+..+.+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.|...+..+++++|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 77888999999999999999999999999998889999988887788889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++..+++ +++++
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES 148 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence 9999999999999998 67777776554 4899999999999976554 788899999999998 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (198)
||+++.|++++|.++++.+.......
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC----
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999998766543
No 4
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5e-36 Score=213.49 Aligned_cols=173 Identities=42% Similarity=0.797 Sum_probs=154.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..+.+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 34679999999999999999999999999888899998888888888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++.++..+...|...+....++.|+++|+||+|+.++. .+.+..+++..++...++..++++||++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999997678999998888899999999999997531 1237788899999999985599999999
Q ss_pred CCCHHHHHHHHHHHHcCCCcc
Q 029144 163 QQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~~ 183 (198)
|.|++++|+++++.+......
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC-
T ss_pred CCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999998776543
No 5
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.6e-36 Score=214.74 Aligned_cols=182 Identities=34% Similarity=0.576 Sum_probs=148.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
++.+||+++|.+|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999988888888887778888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+ ..|...+.... ++.|+++|+||+|+.+.. +..+++..++...+. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999988 67777776644 589999999999997543 677888899999998 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcchH----HhhccccCCcccC
Q 029144 162 TQQNVKAVFDAAIKVVLQPPKNKK----KKKRKAQKACSIL 198 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~~~----~~~~~~~~~c~~~ 198 (198)
+|.|++++|+++.+.+.....+.. +.+++++.+|.||
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 999999999999998865544332 2445556678876
No 6
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=217.96 Aligned_cols=181 Identities=27% Similarity=0.483 Sum_probs=143.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|...+.+||+++|.+|+|||||++++.++.+...+.++.+..+.....+++..+.+.+||+||++.+...+..+++++|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 55678999999999999999999999999998888888887776667777777889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 78877777653 5799999999999987654 788889999999998 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL 198 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~ 198 (198)
||++|.|++++|.+|.+.+....... +.++.|.+|
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~~~~~~-----~~~~~c~l~ 201 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIARVENSY-----GQERRCHLM 201 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHC------------------
T ss_pred eCCCCCCHHHHHHHHHHHHHhhhhhh-----ccccccccC
Confidence 99999999999999999987654443 233448775
No 7
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.7e-36 Score=213.55 Aligned_cols=179 Identities=91% Similarity=1.425 Sum_probs=134.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|++.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67788999999999999999999999999888888888876665555667777888999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.............+..+++..++...+..+|+++||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999999985579988888777999999999999976543111111223357788889999888768999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|+++++.+..
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998765
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-35 Score=210.07 Aligned_cols=176 Identities=55% Similarity=0.996 Sum_probs=151.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||+++|...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 46799999999999999999999999988888899888777777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+|+++||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 9999999999998558888888887899999999999997642100 01112234778889999999887679999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
+|.|++++|+++++.+..
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 9
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3e-35 Score=207.68 Aligned_cols=181 Identities=65% Similarity=1.056 Sum_probs=153.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999988888888887777778889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++......|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 9999999999998557888888877799999999999997642100 00011234677888889998887689999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcch
Q 029144 162 TQQNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~~ 184 (198)
+|.|++++|+++.+.+.....++
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC--
T ss_pred CccCHHHHHHHHHHHHhcccccC
Confidence 99999999999999998776544
No 10
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=213.59 Aligned_cols=164 Identities=32% Similarity=0.557 Sum_probs=147.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 35789999999999999999999999988888888887777778888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++..++. +++++||+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 159 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence 9999999999998 77877777765 3899999999999977543 778888999999988 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
+|.|++++|.+|++.+..
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998854
No 11
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.3e-35 Score=214.51 Aligned_cols=180 Identities=36% Similarity=0.650 Sum_probs=150.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||+++|..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 35799999999999999999999999999888999988887777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+...|+..+....++.|+++|+||+|+.++.... ......+.+..+++..++...++.+|+++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 9999999999985589999999888899999999999997631000 00011234788899999999998679999999
Q ss_pred CCCC-HHHHHHHHHHHHcCCCcc
Q 029144 162 TQQN-VKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 162 ~~~~-i~~~~~~i~~~~~~~~~~ 183 (198)
+|.| ++++|..+++.+......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC----
T ss_pred CCcccHHHHHHHHHHHHhccCcC
Confidence 9998 999999999998766543
No 12
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=210.66 Aligned_cols=178 Identities=53% Similarity=0.887 Sum_probs=143.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..+.+||+++|.+|+|||||++++.++.+...+.+|++..+...+.+++..+.+.+||+||++.|..++..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999988888888888877777888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+|||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+|+++||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999998557988888887899999999999997632100 0001123467788889999888768999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 029144 161 KTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (198)
++|.|++++|+++++.+...
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988643
No 13
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.2e-35 Score=207.67 Aligned_cols=177 Identities=37% Similarity=0.709 Sum_probs=149.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45789999999999999999999999998888888887777667777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+|||++++.++..+...|...+....++.|+++|+||+|+.++.... ......+.++.+++..++..++..+|+++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999988678888888877899999999999997531100 0011223477888999999988558999999
Q ss_pred C-CCCCHHHHHHHHHHHHcC
Q 029144 161 K-TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~-~~~~i~~~~~~i~~~~~~ 179 (198)
+ ++.|++++|+.+++.+..
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998764
No 14
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=206.99 Aligned_cols=164 Identities=25% Similarity=0.434 Sum_probs=141.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+.....+++..+.+.+||+||++.+... ..+++++|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45789999999999999999999999998888899988777777788888999999999999988875 56889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... ++.+++.+++...++ +|+++
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~ 164 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFEV 164 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEEE
Confidence 99999999999998 67877777653 5899999999999976543 778889999999998 89999
Q ss_pred cc-CCCCCHHHHHHHHHHHHcC
Q 029144 159 SS-KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 159 Sa-~~~~~i~~~~~~i~~~~~~ 179 (198)
|| +++.|++++|+.+++.+.+
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHC
T ss_pred eecCccccHHHHHHHHHHHHhh
Confidence 99 8999999999999998753
No 15
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-35 Score=210.13 Aligned_cols=167 Identities=26% Similarity=0.455 Sum_probs=143.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
....++|+++|.+|+|||||++++..+.+...+.++....+......++..+.+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34679999999999999999999999988877888877666666777888899999999999999999989999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
+|||++++.++..+ ..|...+.... ++.|+++|+||+|+.+.. +..+++..++..++. +++++|
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S 151 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETS 151 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEe
Confidence 99999999999888 55655555432 478999999999997532 567788888888887 799999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCc
Q 029144 160 SKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
|++|.|++++|++|++.+.....
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSSSCE
T ss_pred cCCCCCHHHHHHHHHHHHhhhhc
Confidence 99999999999999998866543
No 16
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-34 Score=205.96 Aligned_cols=180 Identities=49% Similarity=0.845 Sum_probs=146.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
....+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34678999999999999999999999998888888887777667788888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
+|||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999988678888888877899999999999997642100 0001112367778888998888768999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCc
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
++|.|++++|++|.+.+.....
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876543
No 17
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=209.54 Aligned_cols=177 Identities=45% Similarity=0.860 Sum_probs=131.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++.|...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 35799999999999999999999999888888888877777778888988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 9999999999998557988888877899999999999997653100 00011224677888999999887689999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
+|.|++++|++|++.+...
T Consensus 192 ~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=203.26 Aligned_cols=168 Identities=31% Similarity=0.555 Sum_probs=145.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 3467999999999999999999999988877777776544 456677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
++|+|++++.++..+ ..|+..+....++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK 153 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 999999999999998 788888888888999999999999987654 677888999999998 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 029144 162 TQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+|.|++++|+++.+.+.....
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998865433
No 19
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=5.5e-34 Score=204.11 Aligned_cols=176 Identities=50% Similarity=0.876 Sum_probs=150.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
...+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 35789999999999999999999999988888888877776777888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++......|...+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999988678888888877899999999999997652110 01111234677888899999887679999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
+|.|++++|++|++.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998753
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.9e-34 Score=203.33 Aligned_cols=163 Identities=34% Similarity=0.539 Sum_probs=146.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999999988888898888788888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+ ..|+..+... ..+.|+++|+||+|+.+... +..++++.++..++. +|+++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 163 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK 163 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence 9999999999988 6777766543 25899999999999976554 788899999999997 79999999
Q ss_pred -CCCCHHHHHHHHHHHHc
Q 029144 162 -TQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 162 -~~~~i~~~~~~i~~~~~ 178 (198)
++.|++++|+++.+.+.
T Consensus 164 ~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SSCBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 99999999999998775
No 21
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=7e-34 Score=204.16 Aligned_cols=168 Identities=30% Similarity=0.601 Sum_probs=145.4
Q ss_pred CC--CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCC
Q 029144 1 MS--ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG 77 (198)
Q Consensus 1 m~--~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 77 (198)
|+ .++.++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 65 34679999999999999999999999988887777776544 4566778888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
+|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++
T Consensus 81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 148 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL 148 (206)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence 9999999999999999998 77888887765 6899999999999976543 677888889988887 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++||++|.|++++|.++.+.+...
T Consensus 149 ~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 149 ETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987543
No 22
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-34 Score=207.95 Aligned_cols=176 Identities=37% Similarity=0.713 Sum_probs=148.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
...+||+++|.+|+|||||+++|..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999988888888877776667778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+|+++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999999999988668888888877899999999999997531100 00112234778889999999885589999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 029144 162 -TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 -~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|+.+++.+..
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998753
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.3e-34 Score=199.03 Aligned_cols=165 Identities=29% Similarity=0.595 Sum_probs=136.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988777777776554 45566778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999988 67877776654 5899999999999977543 677888999999887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|+++.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998753
No 24
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.2e-34 Score=202.71 Aligned_cols=164 Identities=23% Similarity=0.349 Sum_probs=140.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
...+.+||+++|.+|+|||||++++..+.+...+.+|. ..+...+.+++..+.+.+||++|++.|. +++++|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 34578999999999999999999999999888887774 4556778889999999999999998877 67889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... .+.+..+++..++...+..+|+++|
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence 999999999999998 67888887764 589999999999995321 1237888899999999744899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCC
Q 029144 160 SKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~ 180 (198)
|++|.|++++|+++++.+...
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987644
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.2e-34 Score=199.03 Aligned_cols=163 Identities=28% Similarity=0.530 Sum_probs=142.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.+||+++|.+|+|||||++++.++.+...+.+|.+..+.....+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888877777777788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.++..+ ..|+..+... .++.|+++|+||+|+.+... +..+++..++...+..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999988 6676666554 25899999999999976543 6778888888887434899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029144 163 QQNVKAVFDAAIKVVL 178 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~ 178 (198)
|.|++++|+++.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998774
No 26
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.1e-34 Score=206.72 Aligned_cols=174 Identities=65% Similarity=1.076 Sum_probs=148.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+...+.++..+.+...+.+++..+.+.+||+||++.|...+..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999998888899888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++......|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 9999999999998558999998888899999999999997653210 01112233677888899999998789999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029144 162 TQQNVKAVFDAAIKVV 177 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (198)
+|.|++++|+++++.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 27
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.6e-34 Score=202.91 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=137.8
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|+..+.+||+++|.+|+|||||++++.++.+.. +.+|.+..+...+.+++..+.+.+||+||+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 777889999999999999999999999998876 77888877777788888889999999999976 356788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh---C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHY---A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
+++|||++++.++..+ ..|+..+... . ++.|+++|+||+|+.+.. .+.+..+++..++...+..+++
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999998 6665444432 2 589999999999995311 1236778888888887434899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++||++|.|++++|+++++.+...
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3.2e-34 Score=198.99 Aligned_cols=163 Identities=32% Similarity=0.564 Sum_probs=142.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999998888888888877777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.++... ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999988 77777776654 3899999999999976543 677888999998887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|+++.+.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998753
No 29
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.8e-35 Score=205.63 Aligned_cols=165 Identities=29% Similarity=0.609 Sum_probs=115.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999998887766667665444 456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999988 67888877764 6899999999999976543 678888999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
++.|++++|.+|.+.+...
T Consensus 154 ~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAK 172 (183)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 30
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=205.83 Aligned_cols=169 Identities=30% Similarity=0.525 Sum_probs=138.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.+..++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++++|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 34679999999999999999999999988877777776544 45567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 157 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSA 157 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCC
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887765 5899999999999976543 677888889988887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCcc
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
+++.|++++|++|++.+......
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998765443
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=5e-34 Score=200.50 Aligned_cols=166 Identities=31% Similarity=0.537 Sum_probs=146.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 46799999999999999999999999988888899888777778888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++..+ ..|+..+ .... .+.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 87 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 154 (181)
T 2fn4_A 87 VFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASAK 154 (181)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999988 5666665 4333 5899999999999977543 677888888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029144 162 TQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (198)
+|.|++++|++|.+.+....
T Consensus 155 ~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999886433
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.2e-33 Score=198.68 Aligned_cols=166 Identities=33% Similarity=0.566 Sum_probs=143.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999988777777765444 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.. ..|+..+.... ++.|+++|+||+|+.+... +..++++.++...+. +++++||+
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK 157 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence 99999999999988 78877777765 6899999999999976543 677888999999888 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 029144 162 TQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (198)
+|.|++++|.+|.+.+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SCTTHHHHHHHHHHTCC---
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999886654
No 33
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=206.54 Aligned_cols=165 Identities=30% Similarity=0.539 Sum_probs=138.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++.+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||+++|...+..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999988777777775444 566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++++++...++.+++++||+
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999988 68888887765 6899999999999976543 778888999999887679999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|.+|++.+..
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=9.2e-34 Score=197.14 Aligned_cols=165 Identities=30% Similarity=0.552 Sum_probs=142.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
+.+.+||+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999988777777775444 45566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|+|++++.++... ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999988 67777776654 6899999999999976543 677888889888887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|++|.+.+.+
T Consensus 151 ~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=7.6e-34 Score=197.31 Aligned_cols=165 Identities=35% Similarity=0.544 Sum_probs=143.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 3568999999999999999999999998887777777544 456667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
++|+|++++.+++.+ ..|+..+....++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence 999999999999888 678777776657899999999999976543 677888889999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|++|.+.+.+
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998754
No 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.2e-33 Score=198.24 Aligned_cols=165 Identities=32% Similarity=0.600 Sum_probs=144.3
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 34679999999999999999999999988877777776444 55566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++++++...+. +++++||
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA 159 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999888 78887777765 6899999999999976543 677888999999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
+++.|++++|+++++.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998754
No 37
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-34 Score=204.20 Aligned_cols=164 Identities=29% Similarity=0.581 Sum_probs=144.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++.+||+++|.+|+|||||++++..+.+...+.+|.+.. ....+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 357999999999999999999999998877777777543 4556778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78888887765 5799999999999976543 677888888888887 79999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
+|.|++++|.++++.+..
T Consensus 172 ~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 38
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.7e-34 Score=200.85 Aligned_cols=168 Identities=27% Similarity=0.410 Sum_probs=142.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECC-eEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
..+.+||+++|.+|+|||||++++.++.+...+.+|.+ +.....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999887766667765 34456666765 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
+++|||++++.+++.+ ..|+..+.... .+.| +++|+||+|+.+... +..+++..++...+. +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999888 67877777643 2455 899999999976543 677888899999888 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
++||++|.|++++|.+|.+.+.....
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999876653
No 39
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4.3e-33 Score=197.52 Aligned_cols=165 Identities=33% Similarity=0.635 Sum_probs=144.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.+..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34579999999999999999999999988777777775444 45566778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..++++.++...++ +++++||
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 166 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA 166 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999888 77888887765 6899999999999976543 677888999999998 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|++|.+.+.+
T Consensus 167 ~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 40
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=8.3e-34 Score=201.56 Aligned_cols=164 Identities=30% Similarity=0.595 Sum_probs=140.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988777777765444 456777888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... +..++++.++...+. +++++||+
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 67887777654 6899999999999976543 677888999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|++|++.+.+
T Consensus 167 ~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998863
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=201.02 Aligned_cols=168 Identities=30% Similarity=0.592 Sum_probs=146.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 357899999999999999999999998887777777544 4566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence 99999999999998 77888887765 5899999999999977654 777888999999998 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcc
Q 029144 162 TQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
++.|++++|.+|.+.+......
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988654443
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=198.47 Aligned_cols=164 Identities=24% Similarity=0.370 Sum_probs=129.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--cccccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~~~~~ 81 (198)
.+.+||+++|.+|+|||||++++.+..+...+.+...+.....+.+++..+.+.+||+||++. +...+..+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999887765544333344566677888889999999999987 566667788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
++|||++++.++..+ ..|...+.... ++.|+++|+||+|+.+.+. +..++++.++...+. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999988 67777776643 5899999999999976543 677788888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 029144 160 SKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~ 179 (198)
|++|.|++++|++|.+.+..
T Consensus 150 a~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 43
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-33 Score=195.82 Aligned_cols=167 Identities=35% Similarity=0.627 Sum_probs=135.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
.++.++|+++|.+|+|||||++++.++.+. ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 346899999999999999999999998874 45566665444 3445678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
+++|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++|
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 154 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS 154 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999888 78888877765 5899999999999986543 677888889988888 799999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 029144 160 SKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (198)
|+++.|++++|+++.+.+....
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999886543
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=7.5e-34 Score=200.69 Aligned_cols=164 Identities=29% Similarity=0.522 Sum_probs=143.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++.+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 357999999999999999999999998887777777544 3556677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 99999999999988 77877776654 6899999999999976543 677888889998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|+++++.+..
T Consensus 156 ~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 156 TGENVEEAFVQCARKILN 173 (186)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.4e-33 Score=194.35 Aligned_cols=164 Identities=26% Similarity=0.549 Sum_probs=143.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
..+.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 34679999999999999999999999988777777776544 45566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|+|++++.++... ..|+..+.... +..|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999988 78888887764 7899999999999986543 677888889888887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 029144 161 KTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~ 178 (198)
+++.|++++|.+|.+.+.
T Consensus 151 ~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 151 KNAININELFIEISRRIP 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998764
No 46
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-34 Score=202.10 Aligned_cols=166 Identities=29% Similarity=0.491 Sum_probs=143.4
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
|...+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++. ...+..+++++|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 455678999999999999999999999999888888888877777778888889999999999988 7777888899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 169 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC 169 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999988 67777766543 5899999999999977543 778888899998887 89999
Q ss_pred ccCCCC-CHHHHHHHHHHHHcC
Q 029144 159 SSKTQQ-NVKAVFDAAIKVVLQ 179 (198)
Q Consensus 159 Sa~~~~-~i~~~~~~i~~~~~~ 179 (198)
||++|. |++++|++|++.+.+
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHHHh
Confidence 999999 999999999998753
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=195.13 Aligned_cols=166 Identities=33% Similarity=0.572 Sum_probs=142.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999988777777776544 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|+|++++.++... ..|+..+.... ++.|+++|+||+|+.+.. ....+..+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccc-------cccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999988 67877777655 689999999999997642 1223677888888888888 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
|.|++++|+++.+.+.+
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987643
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.1e-33 Score=196.31 Aligned_cols=161 Identities=24% Similarity=0.383 Sum_probs=119.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF 85 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (198)
.+||+++|.+|+|||||++++.+.... ...++.+..+.....+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876543 3344555556667788899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 163 (198)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (198)
|++++.+++.. ..|...+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 99999999998 66766666543 6899999999999987654 788888999999997 8999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029144 164 QNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (198)
.|++++|+++.+.+..
T Consensus 149 ~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 149 HNVQALFEGVVRQIRL 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999997753
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.4e-33 Score=199.13 Aligned_cols=163 Identities=32% Similarity=0.565 Sum_probs=145.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999999888888888877777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.++..++. +++++||++
T Consensus 97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 164 (187)
T 2a9k_A 97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKT 164 (187)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999988 67777776654 3899999999999976543 677888899999988 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|++|.+.+..
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 165 RANVDKVFFDLMREIRA 181 (187)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998753
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=8.5e-34 Score=196.66 Aligned_cols=162 Identities=30% Similarity=0.572 Sum_probs=142.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.++|+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888777777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|++++.++..+ ..|...+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999888 66666665543 5899999999999976543 677888889988888 799999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029144 163 QQNVKAVFDAAIKVVL 178 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~ 178 (198)
|.|++++|+++.+.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998763
No 51
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=202.91 Aligned_cols=164 Identities=24% Similarity=0.433 Sum_probs=134.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC-cccccccccCCCcE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~ 80 (198)
...+||+++|.+|+|||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45799999999999999999999854 3445544444455667778899889999999999876 55566778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+++|||++++.+|+.+ ..|...+... .+++|+++|+||+|+.+.+. +..++++.++...++ +|+++
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~ 182 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET 182 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 6777666543 25899999999999976543 677788888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcC
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
||++|.|++++|.++++.+..
T Consensus 183 SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998743
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-33 Score=199.13 Aligned_cols=165 Identities=27% Similarity=0.538 Sum_probs=143.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4679999999999999999999999988777777776554 444556777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++++++...+. +++++||+
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 168 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK 168 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78888887765 5899999999999976443 677889999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
++.|++++|++|.+.+...
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTBSHHHHHHHHHHTCC--
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999987543
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=6.4e-33 Score=194.34 Aligned_cols=165 Identities=35% Similarity=0.644 Sum_probs=137.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 4689999999999999999999999988777777776444 566678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.. +..+++..++......++++
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEEE
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-----------cCHHHHHHHHHhcCCceEEE
Confidence 99999999999888 77777766543 578999999999997322 67788888888444347999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+||++|.|++++|+++++.+...
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=198.93 Aligned_cols=165 Identities=31% Similarity=0.538 Sum_probs=143.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34679999999999999999999999988777777765444 45566778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.++...++ +++++||
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 169 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA 169 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999888 67877777654 5899999999999976543 677888889988888 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
+++.|++++|.+|.+.+..
T Consensus 170 ~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=196.32 Aligned_cols=164 Identities=26% Similarity=0.497 Sum_probs=141.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.++|+++|.+|+|||||++++.++.+...+.++....+......++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999998877777887766666677788888999999999999999988899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|++++.+++.. ..|...+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999887 66666555532 5899999999999976543 667778888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
+|.|++++|++|.+.+..+
T Consensus 150 ~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 150 LNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTBSHHHHHHHHHHTCCSS
T ss_pred CCcCHHHHHHHHHHHHhhh
Confidence 9999999999999877543
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=203.27 Aligned_cols=165 Identities=31% Similarity=0.570 Sum_probs=134.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777777765443 55667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA 169 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA 169 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999988 67877776654 6899999999999976543 677888889988887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|.+|++.+..
T Consensus 170 ~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILN 188 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 57
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.6e-33 Score=194.91 Aligned_cols=162 Identities=25% Similarity=0.408 Sum_probs=127.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCccc-ccccccCCCcEEEE
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFLL 83 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 83 (198)
.+||+++|.+|+|||||++++.+......+.++. .+.....+.+++..+.+.+||+||++.+.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998765544433333 445566677889899999999999998876 77777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||+++++++..+ ..|+..+....+ +.|+++|+||+|+.+... +..+++..++...++ +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999998 677777766653 899999999999986554 788899999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|+++++.+..
T Consensus 150 ~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.3e-33 Score=199.97 Aligned_cols=165 Identities=27% Similarity=0.501 Sum_probs=139.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeE--------------------------
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST-------------------------- 53 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------- 53 (198)
|+.+..+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7888899999999999999999999999988877777775444 3334444433
Q ss_pred -----------EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (198)
Q Consensus 54 -----------~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 122 (198)
+.+.+||+||++.+...+..+++.+|++++|+|++++.++..+ ..|+..+....+ .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence 7899999999999999999999999999999999999999988 788877776544 99999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
..... +..+++..++...+. +++++||+++.|++++|.+|.+.+.+
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33322 677888999999988 89999999999999999999988753
No 59
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-33 Score=198.58 Aligned_cols=165 Identities=29% Similarity=0.623 Sum_probs=144.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.+..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34679999999999999999999999988777777775444 45566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++..+++ +++++||
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (203)
T 1zbd_A 85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASA 152 (203)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEEC
Confidence 999999999999988 77888887765 5899999999999976543 677888899999998 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|++|.+.+..
T Consensus 153 ~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 153 KDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7e-33 Score=196.47 Aligned_cols=162 Identities=35% Similarity=0.575 Sum_probs=134.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.++|+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 57899999999999999999999998888888888777777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +..+++++++...+. +++++||++
T Consensus 100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 999999999988 78877777654 489999999999997632 567888899999988 799999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|++|.+.+..
T Consensus 167 ~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 167 RQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.8e-33 Score=194.78 Aligned_cols=163 Identities=31% Similarity=0.637 Sum_probs=136.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 578999999999999999999999988777777776444 4556667778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.. +..+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999888 78887777765 589999999999994322 567788889998988 799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
|.|++++|.++.+.+.+.
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.5e-33 Score=195.84 Aligned_cols=163 Identities=34% Similarity=0.571 Sum_probs=141.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+.++|+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 569999999999999999999999888777777775 4445667788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|+|++++.++... ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||++
T Consensus 93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (179)
T 2y8e_A 93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKA 160 (179)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999888 67777666544 5899999999999976543 677888888888887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|++|.+.+..
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987654
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=199.98 Aligned_cols=171 Identities=32% Similarity=0.520 Sum_probs=135.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
..+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45679999999999999999999999988777777775444 46677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... ....+.+..+++..++...+. +++++||
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~SA 178 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSA 178 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence 999999999999988 67888887765 5899999999999974211 011223677888899999988 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029144 161 KTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (198)
++|.|++++|.+|++.+.+
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 64
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=199.92 Aligned_cols=166 Identities=25% Similarity=0.412 Sum_probs=137.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc-cccceeEEEEECCeEEEEEEEeCCCccCccc-ccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~ 81 (198)
...+||+++|.+|+|||||+++|.+......+.++ ..+.+...+.+++..+.+.+||++|++.+.. ++..+++++|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46799999999999999999999754332222233 3445566677889899999999999988765 677788899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.++...+. +|+++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999998 67877777654 4899999999999976543 778888999998887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 029144 160 SKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (198)
|+++.|++++|.++++.+....
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999886543
No 65
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.4e-33 Score=196.39 Aligned_cols=167 Identities=30% Similarity=0.570 Sum_probs=125.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (198)
..+.++|+++|.+|+|||||++++.++.+...+.++.+.. ....+.++ +..+.+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3468999999999999999999999998877777777543 34555555 556788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
+++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... .+..+++..++......++
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCE
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeE
Confidence 9999999999999888 77777666543 5899999999999964321 2567788888875444479
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+++||++|.|++++|+++.+.+.+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.2e-33 Score=198.50 Aligned_cols=164 Identities=32% Similarity=0.571 Sum_probs=141.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee--EEEEECCe---------EEEEEEEeCCCccCcccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 72 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~D~~G~~~~~~~~~ 72 (198)
++.+||+++|.+|+|||||++++.++.+...+.+|.+..+. ....+++. .+.+.+||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 35799999999999999999999999887777777765543 34445544 78899999999999999999
Q ss_pred cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
.+++++|++++|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY 157 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence 999999999999999999999988 68888777665 5899999999999976543 6778888999988
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 151 GAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+. +++++||+++.|++++|.+|.+.+.+
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 88 79999999999999999999998854
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.1e-34 Score=205.32 Aligned_cols=168 Identities=25% Similarity=0.360 Sum_probs=109.6
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccc-cceeEEEEECCe--EEEEEEEeCCCccCcccccccccC
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYR 76 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~ 76 (198)
...+.++|+++|.+|+|||||++++.++ .+...+.+|.+ +.....+.+++. .+.+.+||+||++.+...+..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456789999999999999999999998 77777778876 455666777776 789999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC----CCCEEEEeecCCccc-ccccccCCCCCccccHHHHHHHHHHcC
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLDLRD-DKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
++|++++|||++++.++..+ ..|+..+....+ +.|+++|+||+|+.+ ... +..+++..++...+
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT 164 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence 99999999999999999998 688888887654 899999999999976 443 77888999999999
Q ss_pred CCEEEEeccCC-CCCHHHHHHHHHHHHcCCC
Q 029144 152 APVYIECSSKT-QQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 152 ~~~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~ 181 (198)
. +++++||++ +.|++++|++|.+.+....
T Consensus 165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 165 L-DFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp C-EEEECCC-------CHHHHHHHHHHHHHH
T ss_pred C-EEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 7 899999999 9999999999999886543
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.2e-32 Score=190.51 Aligned_cols=162 Identities=34% Similarity=0.574 Sum_probs=143.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
+.++|+++|.+|+|||||++++..+.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35899999999999999999999998888888888777777778888889999999999999999998899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. ...+++..++...+. +++++||++
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence 999999999988 77877777654 389999999999997632 567788889988888 799999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029144 163 QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (198)
+.|++++|+++.+.+.+
T Consensus 149 ~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988753
No 69
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=195.01 Aligned_cols=165 Identities=29% Similarity=0.627 Sum_probs=143.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
+.++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 578999999999999999999999988877777775444 5566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +..+++..++...+. +++++||+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK 160 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 9999999999988 68888887754 589999999999995432 667788889998887 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 029144 162 TQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (198)
++.|++++|++|.+.+.....
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999876543
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=199.18 Aligned_cols=164 Identities=30% Similarity=0.538 Sum_probs=135.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..+||+++|.+|+|||||++++.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999998887777777753 34556677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.++......+++++||+
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999999999988 78888887765 5899999999999976543 677788888887533489999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 029144 162 TQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~ 178 (198)
+|.|++++|++|.+.+.
T Consensus 173 ~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998875
No 71
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.3e-33 Score=199.13 Aligned_cols=164 Identities=29% Similarity=0.552 Sum_probs=138.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.++|+++|.+|+|||||++++.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 468999999999999999999999998877777777533 4555667777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCCCEEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGAPVYI 156 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (198)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.. +..+++..++. ..+. +++
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~ 152 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNI-PYF 152 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSC-CEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCCc-eEE
Confidence 99999999999888 77777665543 478999999999997422 56677888877 4455 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++||++|.|++++|++|.+.+...
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1e-32 Score=195.52 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=138.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcc-cccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~ 81 (198)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+. ..+..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 467999999999999999999999998887777777544 35566778888999999999999988 8888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS 159 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (198)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.++...+. +++++|
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 165 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS 165 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence 999999999999988 67877777664 6899999999999976543 677888899999988 799999
Q ss_pred cCCC---CCHHHHHHHHHHHHc
Q 029144 160 SKTQ---QNVKAVFDAAIKVVL 178 (198)
Q Consensus 160 a~~~---~~i~~~~~~i~~~~~ 178 (198)
|+++ .|++++|.+|++.+.
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC----
T ss_pred CCcCCcccCHHHHHHHHHHHHh
Confidence 9999 999999999988764
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-34 Score=203.14 Aligned_cols=165 Identities=30% Similarity=0.611 Sum_probs=144.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4678999999999999999999999888777777775444 455566777788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++...++ +++++||+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999988 77888888766 6899999999999976654 778888999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
+|.|++++|+++++.+...
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987543
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3.1e-32 Score=193.69 Aligned_cols=165 Identities=24% Similarity=0.439 Sum_probs=131.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh--CCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC-cccccccccCCCcE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~ 80 (198)
...+||+++|.+|+|||||+++|.+ ..+...+.++..+.+...+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4578999999999999999999985 33445444444455566778899889999999999876 55667778888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144 81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC 158 (198)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (198)
+++|||++++.++... ..|...+.... ++.|+++|+||+|+.+.+. +..+++..++...++ +|+++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999988 67776666542 5899999999999976443 667777888888887 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 029144 159 SSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
||++|.|++++|.++++.+...
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988543
No 75
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.8e-33 Score=203.55 Aligned_cols=166 Identities=37% Similarity=0.617 Sum_probs=140.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCe----------EEEEEEEeCCCccCccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLR 71 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~i~D~~G~~~~~~~~ 71 (198)
.++.+||+++|.+|+|||||+++|..+.+...+.+|.+..+ ...+.+++. .+.+.+||+||++.|...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 35679999999999999999999999888766666665433 344555554 6889999999999999999
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
..+++++|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++..
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~ 170 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK 170 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence 9999999999999999999999988 67887776654 5899999999999976543 677888999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.+. +++++||+++.|++++|++|.+.+...
T Consensus 171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 171 YGI-PYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 988 799999999999999999999988653
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=193.28 Aligned_cols=163 Identities=32% Similarity=0.639 Sum_probs=139.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3578999999999999999999999988777777775444 456677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +..+++..++..+++ +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccc-----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999888 68887777765 479999999999994322 567788888888888 79999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|.+|.+.+..
T Consensus 165 ~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=4.7e-33 Score=198.19 Aligned_cols=165 Identities=24% Similarity=0.274 Sum_probs=131.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC-----------Cccccce-eEEE-EECCeEEEEEEEeCCCccCccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-----------PTVFDNF-SANV-VVDGSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~-----------~t~~~~~-~~~~-~~~~~~~~l~i~D~~G~~~~~~ 69 (198)
.++.+||+++|.+|+|||||++.+. +.+...+. +|.+..+ ...+ .+++..+.+.+||+||++.|..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3468999999999999999996554 44444432 2332222 1222 4566778999999999999999
Q ss_pred ccccccCCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144 70 LRPLSYRGADVFLLAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG 143 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (198)
.+..+++++|++++|||++ +.+++..+ ..|+..+....++.|+++|+||+|+.+. +..+++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~ 156 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMV 156 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHH
Confidence 9999999999999999999 55667666 6677777555579999999999999663 677888
Q ss_pred HHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 144 EELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
.+++...++.+++++||++|.|++++|.+|++.+....
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 99999888756999999999999999999999886543
No 78
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=2e-31 Score=204.22 Aligned_cols=176 Identities=64% Similarity=1.076 Sum_probs=151.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 84 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (198)
..++|+++|.+|+|||||++++..+.+...+.+|++..+...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999999988888998888887888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..++...+..+++++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999998557888888877899999999999997542100 001112347788899999999876899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029144 163 QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (198)
|.|++++|+.+.+.+..+
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988654
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=6e-32 Score=192.82 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=124.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
....||+++|.+|+|||||+++|.++.+.. .+.+|.+.... .+... .+.+.+||+||++.+...+..+++++|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TFEKG--RVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EEEeC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 468899999999999999999999998877 77787763332 23333 477889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-HHHHcCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LRKLIGA 152 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (198)
+|||++++.++... ..|+..+.... ++.|+++|+||+|+.+... ...+....... ++...++
T Consensus 92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSCE
T ss_pred EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCee
Confidence 99999999999998 45555443321 2899999999999976521 00011111111 1134555
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
+++++||++|.|++++|++|++.+....
T Consensus 164 -~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 164 -VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp -EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred -EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999886543
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=3.8e-32 Score=196.74 Aligned_cols=168 Identities=27% Similarity=0.419 Sum_probs=138.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEE-E-CCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-V-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~-~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
...+||+++|.+|+|||||++++.++.+...+.++.+........ . ++..+.+.+||+||++.+...+..+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 367999999999999999999999888777666666544433322 2 34448899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 156 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISA 156 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEec
Confidence 999999999999988 68888777665 4699999999999976543 777888888888887 7999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCcc
Q 029144 161 KTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
++|.|++++|.+|.+.+......
T Consensus 157 ~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHCCTTC
T ss_pred CCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999998765443
No 81
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-34 Score=207.95 Aligned_cols=174 Identities=66% Similarity=1.087 Sum_probs=145.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999999888888888877777777777888889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc--CCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
|||++++.++......|+..+....++.|+++|+||+|+.+...... .....+.+..+++..++...+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 99999999999885588888887767899999999999976431100 0011123566777788888886579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029144 162 TQQNVKAVFDAAIKVV 177 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (198)
+|.|++++|++|++.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.4e-33 Score=201.73 Aligned_cols=165 Identities=30% Similarity=0.611 Sum_probs=132.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++.+||+++|.+|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999888776666666433 3566678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 77888887765 5899999999999976543 555567788888887 69999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029144 162 TQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (198)
++.|++++|.+|.+.+...
T Consensus 179 ~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp --HHHHHHHHHHTTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=3e-32 Score=197.78 Aligned_cols=165 Identities=28% Similarity=0.463 Sum_probs=140.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.+||+++|.+|+|||||+++++.+.+...+.++.+. .......+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 46799999999999999999998877766666677653 34555667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
+|||++++.++..+ ..|+..+....++.|+++|+||+|+.+... . .+...++...+. +|+++||++
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~~ 158 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------K-AKSIVFHRKKNL-QYYDISAKS 158 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------C-GGGCCHHHHHTC-EEEECBGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------c-HHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999998 789888888888999999999999976431 1 244556777787 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCc
Q 029144 163 QQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~ 182 (198)
|.|++++|.+|.+.+.....
T Consensus 159 ~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TBTTTHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999876543
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.4e-30 Score=181.38 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=123.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++..+.+.. +.+|.+. ....+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999988754 4555542 234455554 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-----HHHHcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-----LRKLIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 157 (198)
|+|++++.++......+...+.... ++.|+++|+||+|+.+.. ..++... .+...++ ++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~ 147 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM------------TSSEMANSLGLPALKDRKW-QIFK 147 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCTTSCE-EEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC------------CHHHHHHHhCchhccCCce-EEEE
Confidence 9999999999888444444444322 589999999999997642 1122221 1223454 7999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+||++|.|++++|+++.+.+.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 148 TSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CcCCCCcCHHHHHHHHHHHHhhc
Confidence 99999999999999999988653
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=9.6e-31 Score=186.86 Aligned_cols=157 Identities=19% Similarity=0.250 Sum_probs=119.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988764 455665543 34566676 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-----------
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI----------- 150 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (198)
|+|+++++++... ..|+..+... ..+.|+++|+||+|+.+. ++.+++.++....
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999988 5565555432 258999999999999652 5666666665432
Q ss_pred -----CCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 151 -----GAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 151 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
...+++++||++|.|++++|+++.+.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 223799999999999999999998653
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.8e-30 Score=182.46 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=124.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++.++. ...+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 568999999999999999999999888 66667776533 33445555 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (198)
|+|++++.++... ..|+..+... .++.|+++|+||+|+.+.. ..++..+... ..+. +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999988 4555444432 2589999999999997642 2233332221 2344 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++||++|.|++++|+++.+.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987553
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=3.1e-30 Score=183.08 Aligned_cols=156 Identities=15% Similarity=0.249 Sum_probs=123.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999998864 455665543 45566676 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-----------
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI----------- 150 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (198)
|+|++++.++... ..|+..+... .++.|+++|+||+|+.+. ++.+++.+.....
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence 9999999999998 5665555432 258999999999999752 4555555544321
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 151 GAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
...+++++||++|.|++++|+++.+.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 22379999999999999999999764
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-30 Score=183.51 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=122.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++.++.+. .+.+|.+. ....+.+++ +.+.+||+||++++...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46799999999999999999999988776 55566552 234455665 778899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (198)
|+|+++++++... ..|+..+... ..+.|+++|+||+|+.+. ...++..+... ..+. +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCCc-EEE
Confidence 9999999999998 5666655543 258999999999999753 23344433322 2344 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (198)
++||++|.|++++|++|++.+.......
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999987665443
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=184.07 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=124.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
.+.++|+++|.+|+|||||++++.++. +...+.+|.+ .....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887 4556666665 3344455555 67789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--H---cCCC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK--L---IGAP 153 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~ 153 (198)
+|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+. ...++..+... . .+.
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~- 161 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW- 161 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence 99999999999988 45555544332 48999999999999753 34455555443 1 244
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+++++||++|.|++++|++|.+.+..
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 79999999999999999999987743
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3e-31 Score=183.60 Aligned_cols=155 Identities=14% Similarity=0.191 Sum_probs=118.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS 86 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (198)
+||+++|.+|+|||||++++..+.+.. +.||.+. ....+..++ +.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887754 4566552 223333444 678899999999999999899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-H----HHHcCCCEEEEec
Q 029144 87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-L----RKLIGAPVYIECS 159 (198)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~S 159 (198)
++++.++... ..|+..+... .++.|+++|+||+|+.+.. ..++... + +...+. +++++|
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 142 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATC 142 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEcc
Confidence 9999999988 5555554432 2689999999999996532 1222221 1 112333 699999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 029144 160 SKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~ 179 (198)
|++|.|++++|+++.+.+..
T Consensus 143 a~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred cCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.8e-30 Score=182.88 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=124.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++.++.+...+.+|.+..+.. +...+ +.+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 457999999999999999999999998877777777655432 33444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH-H----HHcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL-R----KLIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 156 (198)
|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+.. ..++.... . ...+. +++
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 162 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCY 162 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEE
Confidence 9999999999988 4555444332 2589999999999997532 22222211 1 12233 689
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++||++|.|++++|++|.+.+...
T Consensus 163 ~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 163 SISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999977543
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=4.8e-31 Score=187.56 Aligned_cols=159 Identities=13% Similarity=0.173 Sum_probs=117.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
..+.+||+++|.+|+|||||++++..+.+.. +.||.+ .....+..++ +.+.+||+||++.+...+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999999887653 345544 2233344454 77889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-HH----HHcCCCEE
Q 029144 83 LAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LR----KLIGAPVY 155 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~ 155 (198)
+|+|++++.++... ..|+..+... .++.|+++|+||+|+.+.. ..++... +. ...+. ++
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~ 167 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YV 167 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EE
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EE
Confidence 99999999999988 5565555432 2589999999999996532 2222221 11 12233 68
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+++||++|.|++++|++|++.+.+
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=2.6e-30 Score=182.02 Aligned_cols=155 Identities=17% Similarity=0.252 Sum_probs=120.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++.++.+ ..+.+|.+... ..+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999877 44455555333 4455566 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (198)
|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++..+.. ...++ +++
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 160 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ 160 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCce-EEE
Confidence 9999999999988 4555444433 258999999999999653 2333333322 12333 799
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 029144 157 ECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~ 176 (198)
++||++|.|++++|++|.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999999764
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.4e-30 Score=184.56 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=122.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+.. +.+|.+. ....+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV-NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC-CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce-EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999998877653 4555542 233455555 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-H----HHHcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-L----RKLIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 156 (198)
|+|+++++++... ..|+..+... .++.|+++|+||+|+.+.. ..++... + +...+. +++
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 161 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIV 161 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999988 4554444332 2589999999999997642 1122221 1 122344 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++||+++.|++++|+++.+.+..
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EccCCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.5e-30 Score=185.49 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=120.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce---eEEEEE-CCeEEEEEEEeCCCccCccccc---ccccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF---SANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYR 76 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~D~~G~~~~~~~~---~~~~~ 76 (198)
++.+||+++|.+|+|||||++++.+... .. ++.+..+ .....+ ++..+.+.+||+||++.|.... ..+++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4689999999999999999997776432 22 2222111 122223 2556788999999999987766 78999
Q ss_pred CCcEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH----Hc
Q 029144 77 GADVFLLAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK----LI 150 (198)
Q Consensus 77 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 150 (198)
++|++|+|||++++ +++... ..|+..+....++.|+++|+||+|+.+..... ...+.+..++...++. ..
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTS
T ss_pred cCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999997 666666 56666665556799999999999986532100 0011255566777777 56
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 151 GAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+. +|+++||++ .|++++|..+++.++
T Consensus 171 ~~-~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 171 HL-SFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CE-EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred Cc-ceEEEEech-hhHHHHHHHHHHHhC
Confidence 66 799999999 999999999998763
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.2e-30 Score=182.50 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=120.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|.+|+|||||++++.++.+ ..+.+|.+. ....+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5689999999999999999999998754 334455542 233445554 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (198)
|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+.. ..++..+.. ...+. +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVW-QIQ 155 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCce-EEE
Confidence 9999999999988 5555544332 2589999999999997642 222222211 12234 699
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++||++|.|++++|+++++.+..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-29 Score=178.63 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=119.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.++|+++|++|+|||||++++..+.+ ..+.+|.+.. ...+.+++ ..+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 4445555532 34455555 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----cCCCEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----IGAPVYI 156 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (198)
|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++..+.... .+. +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 157 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SIV 157 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEE
Confidence 9999999999988 5565555543 368999999999999653 233333332221 223 699
Q ss_pred EeccCCCCCHHHHHHHHHHHHc
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
++||++|.|++++|+++.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1e-30 Score=184.63 Aligned_cols=165 Identities=24% Similarity=0.350 Sum_probs=120.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcccccee-EEEEE---CCeEEEEEEEeCCCccCcccccccccCCCc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFS-ANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (198)
.+||+++|++|+|||||++++.+. .+...+.+|.+..+. ..+.+ ++..+.+.+||++|++.|..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 455556666654432 22222 235678899999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc---HHHHHHHHHHcCCC--
Q 029144 80 VFLLAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT---TAQGEELRKLIGAP-- 153 (198)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 153 (198)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+.+... +. .+....++...+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999997 478777 788888877667899999999999976432 22 33445666666764
Q ss_pred -EEEEeccCCCC-CHHHHHHHHHHHHcCCC
Q 029144 154 -VYIECSSKTQQ-NVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 154 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~ 181 (198)
.++++||+++. ++++++..+.+.+....
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 38999999997 99999999999886643
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.5e-28 Score=175.48 Aligned_cols=164 Identities=34% Similarity=0.573 Sum_probs=138.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
+..++|+++|++|+|||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+...+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 457999999999999999999999998877777776533 3556778898899999999999999988888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (198)
+|+|+++..++... ..|+..+.... .+.|+++|+||+|+.+... +..++++.++...+. .++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999998887 66777666543 5789999999999976543 566788889988887 79999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029144 162 TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (198)
++.|++++|+.+.+.+..
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=6e-28 Score=171.40 Aligned_cols=161 Identities=35% Similarity=0.600 Sum_probs=138.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
..++|+++|++|+|||||++++.+..+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..++++++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 468999999999999999999999988777777776444 5667788888888999999999999998888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 162 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (198)
|+|+.+..+++.+ ..|+..+.... .+.|+++++||+|+.+... ...++++.++...+. .++++||++
T Consensus 108 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald 175 (191)
T 1oix_A 108 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALD 175 (191)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999998877 66776666543 5789999999999976443 567788899998887 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029144 163 QQNVKAVFDAAIKVV 177 (198)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (198)
+.+++++|+.+.+.+
T Consensus 176 ~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 176 STNVEAAFQTILTEI 190 (191)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.1e-29 Score=181.79 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=115.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCe-EEEEEEEeCCCccCccc-ccccccCCCcE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~~~~ 80 (198)
..+.+||+++|.+|+|||||++++..+.+...+.++...... +.+++. .+.+.+||+||++.|.. ++..+++++|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 456899999999999999999999999888777655433322 555543 57888999999999987 78888999999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccccccc------------CCCCC---------
Q 029144 81 FLLAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQFLA------------DHPGA--------- 135 (198)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~------------~~~~~--------- 135 (198)
+++|||+++.. ++......|...+... .++.|+++|+||+|+.+...... .....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555545566555442 24799999999999976431000 00000
Q ss_pred ---ccccHHHHHHHHHHcC--CCEEEEeccCCC------CCHHHHHHHHHHHH
Q 029144 136 ---VPITTAQGEELRKLIG--APVYIECSSKTQ------QNVKAVFDAAIKVV 177 (198)
Q Consensus 136 ---~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~~ 177 (198)
+.+..++++.++.... ..+|++|||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000000111111110 337999999999 99999999998753
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.7e-28 Score=171.86 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=118.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
.++.++|+++|.+|+|||||++++.++.+...+.++.. +.....+.+++. .+.+||+||++.|...+...+..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34689999999999999999999999887766555543 333455666774 456999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-------C-CC
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-------G-AP 153 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~ 153 (198)
++|+|++++...... .++..+... +.|+++|+||+|+.+.. .++........ + ..
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~~--~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKAA--NVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGGG--SCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred EEEEECCCCCcHHHH--HHHHHHHhC--CCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence 999999885433332 222333333 79999999999997531 12222222222 1 13
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+++++||++|.|++++|++|++.+...
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 799999999999999999999877543
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=1.4e-29 Score=190.89 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=122.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCC---CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---ccccccCCCcEE
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~~~~ 81 (198)
||+++|..|+|||||++++.++..+. .+.+|.+..+.. ++ ..+.+++|||+||++|.+ .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 69999999999999999887664432 245666555543 22 347899999999999974 357889999999
Q ss_pred EEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH----cCCCEE
Q 029144 82 LLAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL----IGAPVY 155 (198)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (198)
|+|||++++ +..... ..|+..+....++.|+++++||+|+.++..+. ...+.+..++++++++. .++ +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999998 222222 23344455556799999999999997642100 00012566667777775 566 79
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCCcchHHh
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQPPKNKKKK 187 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~ 187 (198)
|+|||++ .+|.++|..+++.+......-+..
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~ 182 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPELSFLENM 182 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999998 699999999999888655444433
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.4e-29 Score=183.57 Aligned_cols=161 Identities=18% Similarity=0.268 Sum_probs=122.2
Q ss_pred CceeEEEEECCC---------CCCHHHHHHHHhh---CCCCCCCCCcc-ccc-eeEE--------------EEECCeEEE
Q 029144 4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDN-FSAN--------------VVVDGSTVN 55 (198)
Q Consensus 4 ~~~~~i~vvG~~---------~~GKttli~~~~~---~~~~~~~~~t~-~~~-~~~~--------------~~~~~~~~~ 55 (198)
.+.+||+++|.+ |||||||+++|.. +.+...+.+++ +.. .... ..+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 467999999999 9999999999998 56666666665 222 1111 114567788
Q ss_pred EEEEe-----------------------CCCccCcccccccccC---------------------CCcEEEEEEECCCh-
Q 029144 56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFLLAFSLISK- 90 (198)
Q Consensus 56 l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 90 (198)
+.+|| ++|+++|.+++..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999998
Q ss_pred -hhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCEEEEeccCCCCCH
Q 029144 91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQQNV 166 (198)
Q Consensus 91 -~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 166 (198)
.+++.+ ..|+..+... .++.|+++|+||+|+.+... + +++..++... +. +++++||+++.|+
T Consensus 177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~gv 242 (255)
T 3c5h_A 177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVNV 242 (255)
T ss_dssp --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBSH
T ss_pred hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCCH
Confidence 999988 6787777654 26899999999999965432 3 5677777764 65 7999999999999
Q ss_pred HHHHHHHHHHHc
Q 029144 167 KAVFDAAIKVVL 178 (198)
Q Consensus 167 ~~~~~~i~~~~~ 178 (198)
+++|++|++.+.
T Consensus 243 ~elf~~l~~~l~ 254 (255)
T 3c5h_A 243 DLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2.5e-28 Score=177.90 Aligned_cols=168 Identities=11% Similarity=0.064 Sum_probs=117.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------ccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPL 73 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~ 73 (198)
.+.++|+++|.+|+|||||+++++++.+.. .+..++..........++ ..+.+|||||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 467999999999999999999999886642 222223333333344454 567899999983311 11123
Q ss_pred ccCCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHH---HHHHHHHH
Q 029144 74 SYRGADVFLLAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTA---QGEELRKL 149 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 149 (198)
++..+|++++|+|++++.++... ...|+..+....++.|+++|+||+|+.+... +..+ .+..++..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence 46788999999999998776421 1356666666556899999999999976543 3333 45566666
Q ss_pred cC--CCEEEEeccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144 150 IG--APVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184 (198)
Q Consensus 150 ~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (198)
.+ . +++++||++|.|++++|++|++.+.......
T Consensus 175 ~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 175 VKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp CCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 65 5 7999999999999999999999886554433
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=1.6e-28 Score=186.33 Aligned_cols=170 Identities=19% Similarity=0.242 Sum_probs=128.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCc-----ccccccccC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~ 76 (198)
..+||+++|.+|+|||||+++++++.. .. .+.+|....+. .+.+++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999998732 22 23344433333 344433 478889999999988 778888899
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHH---HHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-
Q 029144 77 GADVFLLAFSLISKASYENVAKKWI---PELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA- 152 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (198)
++|++++|||++++.+++.+ ..|. ..+....++.|+++|+||+|+.+.... .....+..+++.+++..++.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999888 5554 444445678999999999999763210 00001455778888988873
Q ss_pred -CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 153 -PVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
.+++++||++ .++.++|..+++.+.....
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence 4899999999 8999999999998765443
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=6.6e-28 Score=167.29 Aligned_cols=153 Identities=15% Similarity=0.188 Sum_probs=112.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc-cccceeEEEEECCeEEEEEEEeCCCccCccc------ccccccC-
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~- 76 (198)
+.++|+++|++|+|||||++++.+..+.....++ +.+.....+.+++ ..+.+|||||++.+.. ....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 3589999999999999999999987654333333 2333444555666 5678999999988753 2244454
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 77 -GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
++|++++|+|+++.+.. ..|+..+... +.|+++|+||+|+..... +.. ++..++..++. ++
T Consensus 80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~ 141 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KV 141 (165)
T ss_dssp HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CE
Confidence 89999999999886533 3455555554 799999999999975432 222 35667777787 79
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 029144 156 IECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+++||++|.|++++|+++.+.+
T Consensus 142 ~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 142 VPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998875
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3e-28 Score=186.34 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=117.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+|+|.+|+|||||+++|..+.+...+ +|....+ ..+...+ +.+.||||||++.|...+..+++++|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35689999999999999999999988765443 4443222 2333444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-H----HcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-K----LIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 157 (198)
|||++++.++......|...+.... ++.|+++|+||+|+.+.. ..++..... . ..+. ++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~ 305 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQA 305 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCE-EEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCC-EEEE
Confidence 9999999999998555555555443 689999999999997642 222222211 1 1233 6999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+||++|.|++++|++|++.+...
T Consensus 306 vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 306 TCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EECCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999988653
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=2.1e-27 Score=163.67 Aligned_cols=150 Identities=23% Similarity=0.189 Sum_probs=107.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-------ccccccccCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~ 77 (198)
.||+++|.+|+|||||++++.+..+. ..+.+++.+........++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988642 33344444555556666664 5679999999873 3344567889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE 157 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (198)
+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.+... ++.+++ ..+..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence 999999999998654433 2344444444 799999999999976421 223333 556656999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 029144 158 CSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+||++|.|++++|+++++.+
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EecccCCChHHHHHHHHHhC
Confidence 99999999999999998865
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.95 E-value=8.1e-28 Score=194.96 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=124.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEE-------EE--CCeEEEEEEEeCCCccCcccccc
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-------VV--DGSTVNLGLWDTAGQEDYNRLRP 72 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~-------~~--~~~~~~l~i~D~~G~~~~~~~~~ 72 (198)
...+.+||+++|.+|+|||||++++.+..+...+.+|.+..+.... .+ ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4557899999999999999999999999888777788766654322 11 23357788999999999999999
Q ss_pred cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144 73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA 152 (198)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
.+++++|++++|+|+++.+. . ..|+..+....++.|+++|+||+|+.+... +..++++.++...+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~---~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN---K-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN 182 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG---H-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred HHccCCcEEEEEEeCCCchh---H-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence 99999999999999987643 3 678888888777899999999999976543 677788888888887
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
+++++||++|.|+++++..+.+.+.....
T Consensus 183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 183 -RFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred -ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 69999999999999999999999876544
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=2.9e-27 Score=190.36 Aligned_cols=163 Identities=16% Similarity=0.181 Sum_probs=121.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL 83 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (198)
.+.+||+++|.+|+|||||++++..+.+... .+|.+..+. .+.+.+ +.+.+|||||++.|...+..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVE-TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE-EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeEE-EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999999886543 455543332 233444 678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEE
Q 029144 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIE 157 (198)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (198)
|||++++.++......+...+.... .++|+++|+||+|+.+.. ..++...... ..++ ++++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~ 462 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNW-YVQP 462 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHHHHHHTTCTTCCSSCE-EEEE
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHHHHHHhchhhhhcCCe-EEEE
Confidence 9999999999998444444444322 589999999999997532 2222222111 1233 6999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQPPKN 183 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (198)
+||++|.|++++|++|.+.+......
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC-----
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987655443
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.8e-27 Score=169.08 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCC----------ccCcccc
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRL 70 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G----------~~~~~~~ 70 (198)
.....++|+++|.+|+|||||++++.++.+...+.++.+.... .....++ .+.+||+|| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 3456899999999999999999999988755554554433322 2223333 477999999 6666666
Q ss_pred cccccCCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH--HHHHH
Q 029144 71 RPLSYRGA---DVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT--AQGEE 145 (198)
Q Consensus 71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 145 (198)
+..+++.+ |++++|+|++++.++... .+...+... +.|+++|+||+|+.+... +.. +++.+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~ 161 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGK----------WDKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence 66666665 999999999998777654 333444443 799999999999976542 221 23333
Q ss_pred -HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 146 -LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 146 -~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+....+. +++++||+++.|++++|++|.+.+.
T Consensus 162 ~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNIDPED-ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTCCTTS-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcccCCC-ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2222344 8999999999999999999998764
No 113
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=4.7e-26 Score=172.71 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=128.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcc----------
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN---------- 68 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~---------- 68 (198)
+++..-.|+++|.+|+|||||++++++..+. .....++..........+ + ..+.+|||||+..+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 3456779999999999999999999988764 333444555555555555 5 667799999986654
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK 148 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (198)
..+..+++.+|++++|+|++++.+..+. ..|+..+... +.|+++|+||+|+..... ...+....+..
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~ 150 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHH
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHH
Confidence 4445677889999999999998888876 6667777775 899999999999973332 45566677777
Q ss_pred HcC-CCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 149 LIG-APVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
..+ ..+++++||++|.|++++|+.+.+.+....
T Consensus 151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 151 KHPELTEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 774 447999999999999999999999886543
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=1.1e-26 Score=164.93 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=113.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC----------ccCcccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP 72 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~ 72 (198)
....++|+++|.+|+|||||++++++..+ ..+.++.+..........+ ..+.+||+|| ++.+...+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 44678999999999999999999998873 3333444333322222112 2366999999 555666666
Q ss_pred cccCCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 73 LSYRGA---DVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 73 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
.+++.+ +++++|+|++++.+.... .+...+... +.|+++|+||+|+.+... .....+++..++..
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence 666554 999999999876544433 333344444 799999999999975421 12344566666766
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+..+++++||++|.|++++|+++.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 555579999999999999999999998753
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=9.2e-27 Score=164.55 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=117.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc-cccceeEEEEECCeEEEEEEEeCCCccCcc------ccccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSY 75 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~ 75 (198)
..+.++|+++|++|+|||||++++.+..+.....++ +.+.....+.+++ ..+.+||+||++.+. ..+..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 446799999999999999999999986543222232 2333444555666 667899999998875 2344455
Q ss_pred C--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 76 R--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 76 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
. .++++++|+|+++. +.. ..|...+... +.|+++|+||+|+..... +. .+...++...+.
T Consensus 82 ~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~- 143 (188)
T 2wjg_A 82 INEKPDLVVNIVDATAL---ERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV- 143 (188)
T ss_dssp HHHCCSEEEEEEEGGGH---HHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred hccCCCEEEEEecchhH---HHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence 3 58999999998763 334 4566666554 899999999999976432 22 345677777887
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
+++++||+++.|++++|+++++.+....
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 144 KVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999887654
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=3.2e-26 Score=169.48 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=117.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc------cccc-
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY- 75 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~- 75 (198)
.+.++|+++|.+|+|||||++++.+..+. .++.+++.......+...+ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 46799999999999999999999986542 3333334333344444555 677899999998876543 4444
Q ss_pred -CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 76 -RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
.++|++++|+|+++.+... .|...+... +.|+++|+||+|+.+... +. .+...++..+++ +
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~ 142 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P 142 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence 5899999999999876543 344555554 899999999999976543 22 236677888887 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHc
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
++++||++|.|++++|+++.+.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 143 VVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999999999775
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=5e-27 Score=163.97 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=112.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------ccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (198)
..++|+++|.+|+|||||++++.+... ...+.+++.+.....+.+++. .+.+|||||+..+.... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998753 344555556666677777774 46799999987643211 134
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
++++|++++|+|++++.++.. ..|+..+.... .+.|+++|+||+|+.+... .. +...+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---------~~--------~~~~~~- 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL---------GM--------SEVNGH- 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC---------EE--------EEETTE-
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh---------hh--------hhccCC-
Confidence 789999999999999888764 35656665544 4799999999999964321 00 111344
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+++++||++|.|++++|++|.+.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 79999999999999999999987644
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=3.1e-27 Score=167.10 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=113.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC-----------ccCccccccccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~~~ 75 (198)
+||+++|.+|+|||||++++.+..+...+.++.... .....+. .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999988766655544222 2223333 477999999 556666666666
Q ss_pred CC-CcEEEEEEECCChhhHHHHHHHHHHH---------Hhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHH
Q 029144 76 RG-ADVFLLAFSLISKASYENVAKKWIPE---------LRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE 144 (198)
Q Consensus 76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (198)
++ ++++++|+++.+..++......|... +... ..+.|+++|+||+|+.+.. .+++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 66 67666666666666776654455431 1111 1489999999999997531 45677
Q ss_pred HHHHHcCCC------EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 145 ELRKLIGAP------VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 145 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
.++...+.+ +++++||++|.|++++|+++.+.+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 778887763 3799999999999999999999886543
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=1.6e-25 Score=169.02 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=115.1
Q ss_pred CCCC-ceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCccC--------ccc
Q 029144 1 MSAS-RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNR 69 (198)
Q Consensus 1 m~~~-~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~ 69 (198)
|.+. +..+|+++|.+|+|||||++++++..+.. ....|+..........++ ..+.+|||||+.. +..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence 4443 46689999999999999999999887642 233344444444444444 6778999999876 334
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL 149 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
....+++.+|++++|+|++++.+..+ ..+...+....++.|+++|+||+|+.+... ...+.+..+
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~~~~~~~~~--- 143 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------EAMKAYHEL--- 143 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------HHHHHHHHT---
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------HHHHHHHHh---
Confidence 45567889999999999998765543 344556666556899999999999965321 011222222
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+..+++++||++|.|++++++.+.+.+..
T Consensus 144 ~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 144 LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 344579999999999999999999987643
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.5e-26 Score=171.04 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=112.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc------cccccccC-
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSYR- 76 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~- 76 (198)
+.++|+++|.+|+|||||++++.+.. ...++.+++.+... ..+.. ...+.+||+||+..+. ..+..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 46899999999999999999999864 34444433333222 22333 4567899999998876 33444554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 77 -GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
++|++++|+|+++.+.. ..|...+... +.|+++|+||+|+..... +. .+...++..+++ ++
T Consensus 79 ~~~d~vi~V~D~t~~e~~----~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v 140 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN----LYLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV 140 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH----HHHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchHhH----HHHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence 69999999999886543 2444455544 899999999999976432 22 345677778887 79
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
+++||++|.|++++|+++++.+.
T Consensus 141 i~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 141 VATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEEccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.2e-25 Score=162.99 Aligned_cols=165 Identities=11% Similarity=0.014 Sum_probs=108.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCC---CCCCCCccccceeEEEEEC-CeEEEEEEEeCCCcc----------Ccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQE----------DYN 68 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~----------~~~ 68 (198)
....++|+++|.+|+|||||++++++... ...+.+++... ....+. .....+.+|||||.. .+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34678999999999999999999998862 22222232221 122222 223567799999953 233
Q ss_pred cccccccCC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 69 RLRPLSYRG---ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 69 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
.....+++. +|++++|+|++++.+... ..++..+... +.|+++|+||+|+.+... .....+...+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~ 171 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQE--------SINALRATQK 171 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHH--------HHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhh--------HHHHHHHHHH
Confidence 333344443 788999999988654333 4566666664 899999999999976432 0001222233
Q ss_pred HHHHc------CCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 146 LRKLI------GAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 146 ~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
..... ...+++++||++|.|++++|++|.+.+....
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 33332 3347999999999999999999999886554
No 122
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=7e-25 Score=174.46 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=98.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------ccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (198)
..++|+++|.+|+|||||++++.+.. +..++.+++.+.....+.+++ +.+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 35899999999999999999999874 455566677777777777887 567799999987765433 346
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++++|++++|+|++++.++... ..+...+... .+.|+++|+||+|+.+... .. ...+... +..+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~~---~~~l~~~-~~~~ 373 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------AL---IRAIADG-TGTE 373 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------HH---HHHHHHH-HTSC
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------hh---HHHHHhc-CCCc
Confidence 7899999999999998877432 2222222222 2799999999999976542 21 1333333 2247
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHc
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
++++||++|.|+++++++|.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999886
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=3.3e-25 Score=163.83 Aligned_cols=150 Identities=13% Similarity=0.217 Sum_probs=113.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----------cccccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY 75 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~~ 75 (198)
.+|+++|.+|+|||||++++.+... ..++.+++.+.....+.+++. .+.+||+||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998753 233444444555666667774 677999999987764 344455
Q ss_pred --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 76 --RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
+++|++++|+|+++.+.... +...+... +.|+++|+||+|+.+... .. .....+....+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~- 141 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC- 141 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred hhCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence 88999999999998655443 33444444 899999999999976542 21 124456777787
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
+++++||++|.|++++|.++.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 142 SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 79999999999999999999887
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.9e-25 Score=175.82 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=114.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----------Cccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR 71 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 71 (198)
+..++|+++|.+|+|||||++++++... ...+.+++.+.....+.+++.. +.+|||||+. .|...+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 3568999999999999999999998765 4555666777677777778754 6799999983 333333
Q ss_pred c-cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHHH
Q 029144 72 P-LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRKL 149 (198)
Q Consensus 72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (198)
. .+++.+|++++|+|++++.++++. .|...+... +.|+++|+||+|+.+... ...++.. .+...
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 316 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 316 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHh
Confidence 2 367789999999999999888776 566666554 899999999999976432 3333322 22222
Q ss_pred ---cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 150 ---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 150 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+..+++++||++|.|++++|..+.+.+..
T Consensus 317 l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 317 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 223379999999999999999999987753
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.9e-25 Score=166.77 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=114.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc----------cc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PL 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------~~ 73 (198)
+.++|+++|.+|+|||||++++.+.... .++.+++.+.....+...+. .+.+|||||+..+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999999987542 23333444444555555554 46699999998876321 12
Q ss_pred c--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 74 S--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
+ .+++|++++|+|+++.+... .|...+... +.|+++|+||+|+.+... +. .....+....+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcC
Confidence 2 26899999999999865443 344444445 799999999999976432 21 22456677788
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+ +++++||++|.|+++++.++.+.+...
T Consensus 143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 7 799999999999999999999877544
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=8.9e-25 Score=173.96 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=119.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCC----------ccCccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~ 71 (198)
...++|+++|.+|+|||||++++.+.. ....+.+++.+.....+..++. .+.+||||| ++.|...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 357899999999999999999999664 3455666777777777778875 567999999 56666555
Q ss_pred cc-ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144 72 PL-SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI 150 (198)
Q Consensus 72 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
.. +++.+|++++|+|++++.+..+ ..|...+... +.|+++|+||+|+.+... ...++..+.+...
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 43 6788999999999998655443 4666666654 899999999999986543 5556655555543
Q ss_pred ----CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 151 ----GAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 151 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+..+++++||++|.|++++|..+.+.+..
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 33479999999999999999999987743
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=1.7e-24 Score=161.54 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=114.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc------cccccc--
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY-- 75 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~-- 75 (198)
+.++|+++|++|+|||||++++.+..+.. .+..++.+.....+.+++. .+.+||+||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35899999999999999999999875422 2223333444455566664 477999999988765 344444
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
.++|++++|+|+++.+. . ..|...+... ...|+++|+||+|+.+... ... ....+.+.++. ++
T Consensus 80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence 68999999999988642 2 2333333333 1399999999999976542 222 25667778887 79
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+++||++|.|+++++..+.+.+...
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999987543
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-25 Score=162.22 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=100.4
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCC---CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCC--
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG-- 77 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~-- 77 (198)
..+.++|+++|++|+|||||++++....+.. .+.++....+ ....+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 3467899999999999999999999987644 2334433222 23567799999999998888888776
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhh-----hCCCCCEEEEeecCCcccccccccCCCCCcccc------HHHH
Q 029144 78 --ADVFLLAFSLI-SKASYENVAKKWIPELRH-----YAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT------TAQG 143 (198)
Q Consensus 78 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~ 143 (198)
+|++++|+|++ ++.++... ..|+..+.. ..++.|+++|+||+|+.+... +. .+++
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~ 149 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEI 149 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHH
Confidence 89999999999 88888887 444444332 225899999999999976532 22 3456
Q ss_pred HHHHHHcCCCEEEEeccCCCCC
Q 029144 144 EELRKLIGAPVYIECSSKTQQN 165 (198)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~ 165 (198)
..++...+. +|+++||+++.+
T Consensus 150 ~~~~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 150 QKVIERRKK-SLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHH-HHHC--------
T ss_pred HHHHHHHhc-cccccccccccc
Confidence 666666666 688999998764
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=7.1e-24 Score=168.01 Aligned_cols=153 Identities=23% Similarity=0.216 Sum_probs=107.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc---------cccccccc
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY 75 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~~ 75 (198)
-+|+++|.+|||||||+|++.+.. +..++.+++.+.....+.+++.. +.+|||||++.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 379999999999999999999875 34556666677777778888854 569999997652 23445678
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH-HHHHHHcCCCE
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EELRKLIGAPV 154 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (198)
+++|++++|+|++++.+..+. .+...++.. +.|+++|+||+|+.+. . ..+. .++. ..+..+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~ 141 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE 141 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence 999999999999886655432 333444444 7999999999998532 1 1122 3333 456546
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++++||++|.|+.++++++.+.+..
T Consensus 142 ~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 142 PIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCHHHHHHHHHHhccc
Confidence 8999999999999999999998853
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=5.8e-24 Score=169.31 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=116.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc-Ccccc--------cccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~--------~~~~ 74 (198)
.++|+++|.+|+|||||++++.+.. +..++.+|+.+.....+.+++ ..+.+|||||+. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999864 466777778777778888887 456799999987 65432 2245
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++.+|++++|+|++++.++++. .++..+ .+.|+++|+||+|+.+. +..+++..+.. .+. +
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence 6789999999999998877654 333333 37899999999999642 23344444432 333 6
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHc
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
++++||++|.|+++++++|.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999999764
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=8.6e-25 Score=171.38 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=115.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc-------cc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS 74 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~ 74 (198)
...++|+++|..|+|||||++++.+..+ ...+.+++.+.....+.+.+. ..+.+|||||++.+..... .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 3578999999999999999999998765 234445555555566666553 2677999999988876533 36
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++++|++++|+|+..... ...|+..+... +.|+++|+||+|+.+... . +...++...++. +
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-C
Confidence 788999999999933222 25677777776 899999999999987542 2 556666667777 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
++++||++|.|++++|+.|.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999998543
No 132
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=7e-23 Score=154.78 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=114.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCcc---------Cccccccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPL 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~ 73 (198)
+..+|+++|++|+|||||++++++..+. .....++.......+..++ ..+.+|||||+. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4568999999999999999999987642 2223344433334444455 567799999987 34455667
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
.++.+|++++|+|+++ -+ .....+...+... +.|+++++||+|+..... ...+....+...+++.
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~~ 149 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFL 149 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCS
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCcC
Confidence 8899999999999977 22 2213334444433 799999999999975221 2334556666667766
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 154 VYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.++++||+++.|++++++.+.+.+..
T Consensus 150 ~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 150 DIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp EEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 79999999999999999999987654
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=1.9e-23 Score=160.45 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=94.8
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD 121 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D 121 (198)
+.+.+||++|++.+++.|..++++++++|+|||+++ ..++.+. ..|+..+... .++.|+++++||+|
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcC
Confidence 778899999999999999999999999999999999 4568877 4555555442 36899999999999
Q ss_pred cccccccc-----cCCCCCccccHHHHHHHHHH-----------cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 122 LRDDKQFL-----ADHPGAVPITTAQGEELRKL-----------IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 122 l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+.+..... .-......++.+++..++.. .++ .+++|||+++.||+++|.++.+.+..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence 96533100 00011112567788887762 344 68899999999999999999998854
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.1e-22 Score=157.34 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=115.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc---------ccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL 73 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~---------~~~ 73 (198)
...++|+++|.+|+|||||++++.+..... .+..++.......+...+ ..+.+|||||...+... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356899999999999999999999875421 222222222223333344 56789999998553211 112
Q ss_pred ccCCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 74 SYRGADVFLLAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
....+|++++|+|++++. ++... ..|+..+....++.|+++|+||+|+..... .++...++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence 345689999999998876 56666 677777776555899999999999976432 244556666667
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
. +++++||++|+|++++++++.+.+...
T Consensus 310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 310 L-NPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 6 799999999999999999999988543
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1.2e-22 Score=159.44 Aligned_cols=171 Identities=13% Similarity=0.033 Sum_probs=115.4
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCC--CCcc-cc----ceeEEE---------EE---CCeEEEEEEEeCC
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTV-FD----NFSANV---------VV---DGSTVNLGLWDTA 62 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~--~~t~-~~----~~~~~~---------~~---~~~~~~l~i~D~~ 62 (198)
.....++|+++|++++|||||+++|.+....... ..+. .. .....+ .. ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3456799999999999999999999875332210 0000 00 000000 00 1123678899999
Q ss_pred CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ 142 (198)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (198)
|++.|...+...+..+|++++|+|++++.++... .+++..+... ...|+++|+||+|+.+... .....++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~-~~~~iivviNK~Dl~~~~~--------~~~~~~~ 153 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEE--------ALSQYRQ 153 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHH--------HHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHc-CCCCEEEEEECccccchHH--------HHHHHHH
Confidence 9999999988899999999999999987755555 4555555544 1358999999999976431 0011223
Q ss_pred HHHHHHHcC--CCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 143 GEELRKLIG--APVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 143 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
..++....+ ..+++++||++|.|++++++.|.+.+.....
T Consensus 154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~ 195 (403)
T 3sjy_A 154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR 195 (403)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC
Confidence 333333221 2369999999999999999999997765443
No 136
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=2.2e-23 Score=158.02 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=94.5
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl 122 (198)
+.+++||++||+++++.|.+++++++++|+|||++ +..++.+....|...+.... .+.|+++++||+|+
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 77889999999999999999999999999999665 66677777444443333322 68999999999999
Q ss_pred cccccccc------CCCCCccccHHHHHHHHH----------HcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 123 RDDKQFLA------DHPGAVPITTAQGEELRK----------LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 123 ~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
.+.+.... ..-.....+.+++..+.. ..++ .+++|||+++.||+.+|..+.+.+.....
T Consensus 247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 76442100 011112356777777743 3344 57889999999999999999998876543
No 137
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=1.1e-24 Score=174.95 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=113.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (198)
++..+|+++|++++|||||+++|.+..+...+.++....+ ...+.. ++ ..+.||||||++.|..++...++.+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 4678999999999999999999987654333333332222 222222 23 3567999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH---HHHcC-CCEEEE
Q 029144 82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL---RKLIG-APVYIE 157 (198)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~ 157 (198)
++|+|++++...+.. +++..+... +.|+++|+||+|+.+... . ....+...+ ...++ ..++++
T Consensus 80 ILVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~-----~----~v~~~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 80 ILVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADP-----E----KVKKELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp EEECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSC-----C----SSSSHHHHTTSCCCCSSSSEEECC
T ss_pred EEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccch-----H----HHHHHHHhhhhhHHhcCCCceEEE
Confidence 999999987666554 333444444 789999999999975321 0 111111111 11221 237899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029144 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
+||++|.|++++|+.+...+...
T Consensus 147 vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHTTC
T ss_pred EECCCCCCchhHHHHHHHhhhcc
Confidence 99999999999999999887543
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=4.2e-22 Score=156.52 Aligned_cols=166 Identities=19% Similarity=0.148 Sum_probs=104.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCC---CCCCCCC--ccccceeE-EEEE-------------C--C----eEEE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVN 55 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~ 55 (198)
|+....++|+++|+.++|||||++++.+.. +..+..+ |....+.. .... + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 345678999999999999999999998432 2222222 22211111 1110 1 1 1367
Q ss_pred EEEEeCCCccCcccccccccCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD 131 (198)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 131 (198)
+.+||+||++.|...+...+..+|++++|+|++++ .+.+.+ ..+... ...|+++|+||+|+.+...
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~---- 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQ---- 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTT----
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHH----
Confidence 89999999999988877888899999999999864 333332 222222 2358999999999976431
Q ss_pred CCCCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 132 HPGAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
.....+++.+++... +. +++++||++|.|+++++++|.+.+..+.
T Consensus 153 ----~~~~~~~i~~~l~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 153 ----AEENYEQIKEFVKGTIAENA-PIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp ----TTTHHHHHHHHHTTSTTTTC-CEEEC------CHHHHHHHHHHHSCCCC
T ss_pred ----HHHHHHHHHHHHhhcCCCCC-eEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 112345566666543 33 7999999999999999999998776543
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=7.7e-23 Score=162.21 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=107.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------ccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (198)
..++|+++|.+|+|||||++++.+.. +.....+++.+.....+.+++ ..+.+|||||+..+...+ ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35799999999999999999998753 355566676666667777888 456799999986654332 235
Q ss_pred cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144 75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV 154 (198)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (198)
++++|++++|+|++++.+... ..|+..+. +.|+++|+||+|+.+... .. ....+. .+ .+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~--~~-~~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE--NI-TQ 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT--TC-CC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc--cC-Cc
Confidence 788999999999999877655 35555553 479999999999976543 11 000111 22 36
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 155 YIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++++||++|.|+++++++|.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999886543
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=4.4e-22 Score=157.75 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=108.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 71 (198)
..++|+++|++|+|||||++++.+... ..++.+++.+.....+.+++.. +.+|||||..++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998754 4555666666667777888864 5699999985433221
Q ss_pred -ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHHH
Q 029144 72 -PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRKL 149 (198)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (198)
...++.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.+... ...++.. .+...
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 1245678999999999987666543 344444444 899999999999976432 2333322 22222
Q ss_pred ---cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 150 ---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 150 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
.+..+++++||++|.|++++|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 233379999999999999999999887643
No 141
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=7.9e-23 Score=156.95 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=91.4
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK 119 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK 119 (198)
..+.+++||++|++.|++.|..++++++++|+|||++ +..++... ..|...+... .++.|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 78889888 5555555432 368999999999
Q ss_pred CCcccccccc---------cCCC--CCccccHHHHHHHHHHc--------------C-CCEEEEeccCCCCCHHHHHHHH
Q 029144 120 LDLRDDKQFL---------ADHP--GAVPITTAQGEELRKLI--------------G-APVYIECSSKTQQNVKAVFDAA 173 (198)
Q Consensus 120 ~Dl~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~--------------~-~~~~~~~Sa~~~~~i~~~~~~i 173 (198)
+|+.++.... ++.. .....+.+++..++... + ...+++|||+++.||+++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9996543200 0000 00112356666664431 1 2246899999999999999999
Q ss_pred HHHHc
Q 029144 174 IKVVL 178 (198)
Q Consensus 174 ~~~~~ 178 (198)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=2.6e-22 Score=148.79 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=106.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCCC--ccccceeEEEEECCeEEEEEEEeCCCccCcccccc---------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------- 72 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~--------- 72 (198)
+.++|+++|.+|+|||||++++++.. +...+.+ ++.........+++ ..+.+|||||+..+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999876 4433334 33444445556666 4577999999876543322
Q ss_pred --cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEee-cCCcccccccccCCCCCccccH------
Q 029144 73 --LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGT-KLDLRDDKQFLADHPGAVPITT------ 140 (198)
Q Consensus 73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~n-K~Dl~~~~~~~~~~~~~~~~~~------ 140 (198)
..++.+|++++|+|+++..... ..+...+.... ...|.++++| |+|+.... +..
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~ 164 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSD 164 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcc
Confidence 2568899999999998622222 22223333322 1456666666 99997432 211
Q ss_pred -HHHHHHHHHcCCCE--E--EEeccCCCCCHHHHHHHHHHHHcC
Q 029144 141 -AQGEELRKLIGAPV--Y--IECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 141 -~~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++++.+....+... + +++||+++.|++++|..|.+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 165 NKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 33455666554321 2 789999999999999999998754
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=3e-22 Score=162.66 Aligned_cols=165 Identities=17% Similarity=0.219 Sum_probs=116.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC-----CCCcc------ccce---eEEEEE---CCeEEEEEEEeC
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVPTV------FDNF---SANVVV---DGSTVNLGLWDT 61 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~-----~~~t~------~~~~---~~~~~~---~~~~~~l~i~D~ 61 (198)
|..++..+|+++|+.++|||||+++++.. .+... ...+. +..+ ...+.+ ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 55567889999999999999999999853 22111 00000 0001 112222 455688999999
Q ss_pred CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHH
Q 029144 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTA 141 (198)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 141 (198)
||+.+|...+...++.+|++++|+|++++.+.+.. ..|..... . +.|+++|+||+|+.... ..+
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~-~--~ipiIvviNKiDl~~a~------------~~~ 144 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE-Q--DLVIIPVINKIDLPSAD------------VDR 144 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHH
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH-C--CCCEEEEEeccCccccC------------HHH
Confidence 99999998888889999999999999998877766 55554443 2 79999999999997532 122
Q ss_pred HHHHHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 142 QGEELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
...++....+.. .++++||++|.|++++|+++++.+..+.
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 344555555542 3899999999999999999999887654
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=5.5e-23 Score=157.32 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=116.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCcc----CcccccccccC---CCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYR---GAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~---~~~ 79 (198)
+|+++|.+|+|||||++++...... ..+..++.......+.+++. ..+.+||+||+. .+..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6899999999999999999876431 23333443333334444431 356799999953 34444444544 499
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-
Q 029144 80 VFLLAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA- 152 (198)
Q Consensus 80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (198)
++++|+|+++ +.+++.. ..|...+..+. .+.|+++|+||+|+.+.. +....+...+..
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~~ 303 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD 303 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhcC
Confidence 9999999998 7788887 77888887764 489999999999996532 234556666552
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 153 PVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
.+++++||+++.|+++++.+|.+.+.....
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 268999999999999999999999876543
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=2.9e-22 Score=160.12 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=110.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC----C---CCCCCC-ccccceeEEEEECCeEEEEEEEeCCCccCccccccccc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT----F---PTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY 75 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~----~---~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 75 (198)
.+.++|+++|+.++|||||++++.+.. . ..+..+ .+.+.....+.+++ ..+.+||+||++.|...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 357899999999999999999998765 1 111111 11111122344455 5678999999999988888889
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc----C
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI----G 151 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 151 (198)
..+|++++|+|++++...+.. +.+..+... ++|+++|+||+|+.+... .....++..++.... +
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~ 162 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN 162 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred hhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccccc
Confidence 999999999999884322221 222334444 789999999999975321 012334455555544 3
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 152 APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
. +++++||++|.|++++++.|.+.+.
T Consensus 163 ~-~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 163 S-SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp C-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c-eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 4 7999999999999999999999774
No 146
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=6.2e-22 Score=152.50 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=85.6
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCc
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVAKKWIPELRHY-APGVPIILVGTKLDL 122 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl 122 (198)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+... ..+.|+++++||+|+
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence 678899999999999999999999999999999999 678888844444444332 368999999999999
Q ss_pred ccccccc----c-CCCCCc-cccHHHHHHHHH-----------HcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 123 RDDKQFL----A-DHPGAV-PITTAQGEELRK-----------LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 123 ~~~~~~~----~-~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
....... . -.+... .++.+++..++. ..++ .+++|||+++.|++++|+++.+.+..
T Consensus 281 ~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence 7543100 0 000011 155677776652 2334 68899999999999999999998753
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.4e-23 Score=166.13 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=101.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCcc--------CcccccccccC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR 76 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 76 (198)
.+|+++|.+|+|||||++++.+... ..++.+++.+.......+.+ ..+.+|||||++ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 6899999999999999999998654 23444444444444444455 457799999985 45566667788
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
++|++++|+|+.++.+..+. ++...++.. +.|+++|+||+|+.+... +..++. ..+...++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-------------------CCCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeE
Confidence 99999999999987776543 455555544 899999999999975321 001111 34544689
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
++||++|.|+.++++++.+.+..
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEeCcCCCChHHHHHHHHHhcCc
Confidence 99999999999999999998864
No 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=4.1e-22 Score=162.16 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=112.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCCC-----CCCCc------cccce---eEEEEE---CCeEEEEEEEeCCCc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYVPT------VFDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~i~D~~G~ 64 (198)
++..+|+++|+.++|||||+++++.. .+.. .+..+ .+..+ ...+.+ ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 45679999999999999999999863 2211 01010 01111 112222 455688999999999
Q ss_pred cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH
Q 029144 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE 144 (198)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (198)
.+|...+...++.+|++++|+|++++.+.+.. ..|..... . ++|+++|+||+|+.... ..+...
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~-~--~ipiIvViNKiDl~~a~------------~~~v~~ 145 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME-M--DLEVVPVLNKIDLPAAD------------PERVAE 145 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH-C--CCCEEEeeeccCccccc------------HHHHHH
Confidence 99999888899999999999999998777666 55554443 2 78999999999997632 222334
Q ss_pred HHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 145 ELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 145 ~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
++....+.. .++++||++|.|++++++++.+.+..+.
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 455555542 4899999999999999999999887654
No 149
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=142.00 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=105.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCC---ccccceeEEEEECCeEEEEEEEeCCCcc-----------Ccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQE-----------DYN 68 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----------~~~ 68 (198)
....++|+++|.+|+|||||++++++..+.....+ ++.........+++. .+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence 34679999999999999999999998876544333 223334445566664 56799999943 333
Q ss_pred cccccccCCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
......++++|++++|+|+++...... ....+...+... ...|+++|+||+|+.+.... ........+.++.+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~----~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL----HDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH----HHHHHhchHHHHHHH
Confidence 444455678999999999876443211 112222222221 24699999999999764320 000001124577788
Q ss_pred HHcCCCEEEEeccCCC-----CCHHHHHHHHHHHHcC
Q 029144 148 KLIGAPVYIECSSKTQ-----QNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 148 ~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 179 (198)
...+. .|+.++...+ .++.++|..+.+.+..
T Consensus 179 ~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 179 DIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88877 5777766643 6899999998887743
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=2.1e-21 Score=152.67 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=109.5
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCC---CCCCCCC--ccccceeE-EEEE-------------C--C----eEEEEE
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG 57 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~ 57 (198)
....++|+++|+.++|||||+++|.+.. +.++..+ |....+.. .... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3457899999999999999999998542 2222222 22111111 1100 1 1 136788
Q ss_pred EEeCCCccCcccccccccCCCcEEEEEEECCChh----hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+||+||++.|.......+..+|++++|+|++++. +.+.+ ..+... ...|+++|+||+|+.+...
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~------ 154 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEK------ 154 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHH------
Confidence 9999999999877777788899999999998643 33322 222222 2358999999999976431
Q ss_pred CCccccHHHHHHHHHH---cCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 134 GAVPITTAQGEELRKL---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
.....+++.++... .+. +++++||++|.|+++++++|.+.+..+.
T Consensus 155 --~~~~~~~i~~~l~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 155 --ALENYRQIKEFIEGTVAENA-PIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp --HHHHHHHHHHHHTTSTTTTC-CEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred --HHHHHHHHHHHHHhcCcCCC-eEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 00123444555543 233 7999999999999999999998776543
No 151
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=4.9e-22 Score=151.11 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=93.7
Q ss_pred EEEEEEEeCCCccCcccccccccCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029144 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121 (198)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 121 (198)
.+.+++||++||+++++.|..++++++++|+|||++ +..++.+....|...+.... ++.|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 377889999999999999999999999999999998 67788888444444444433 6899999999999
Q ss_pred ccccccccc-----CCCCCccccHHHHHHHHHHcC--------------------------CCEEEEeccCCCCCHHHHH
Q 029144 122 LRDDKQFLA-----DHPGAVPITTAQGEELRKLIG--------------------------APVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 122 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~Sa~~~~~i~~~~ 170 (198)
+........ -.......+.+++..++.... ...++++||++..|++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 976432110 011111124566655443211 1257889999999999999
Q ss_pred HHHHHHHcC
Q 029144 171 DAAIKVVLQ 179 (198)
Q Consensus 171 ~~i~~~~~~ 179 (198)
..+.+.++.
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 152
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=2.3e-21 Score=150.49 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=91.8
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD 121 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D 121 (198)
+.+++||++|++.|++.|..++++++++|+|||+++ ..++... ..|+..+... .++.|+++|+||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 778899999999999999999999999999999999 8889988 5666665543 36899999999999
Q ss_pred cccccc---ccc------CCC----------C-CccccHHHHHHHH-----HH--------cCCCEEEEeccCCCCCHHH
Q 029144 122 LRDDKQ---FLA------DHP----------G-AVPITTAQGEELR-----KL--------IGAPVYIECSSKTQQNVKA 168 (198)
Q Consensus 122 l~~~~~---~~~------~~~----------~-~~~~~~~~~~~~~-----~~--------~~~~~~~~~Sa~~~~~i~~ 168 (198)
+..... ... +.. . ...-..+++..++ .. .++ .+++|||+++.||++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~-~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC-YPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE-EEEECCTTCHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc-EEEEEEeecCcCHHH
Confidence 965432 100 000 0 0001234555553 22 123 577999999999999
Q ss_pred HHHHHHHHHcC
Q 029144 169 VFDAAIKVVLQ 179 (198)
Q Consensus 169 ~~~~i~~~~~~ 179 (198)
+|..+.+.+..
T Consensus 375 vF~~v~~~I~~ 385 (402)
T 1azs_C 375 VFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=4.1e-21 Score=154.64 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=83.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC-------------CC----C------CCccccceeEEEEECCeEEEEEEEeC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-------------TD----Y------VPTVFDNFSANVVVDGSTVNLGLWDT 61 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~-------------~~----~------~~t~~~~~~~~~~~~~~~~~l~i~D~ 61 (198)
+..+|+++|++|+|||||+++|+...-. .. + ...+.......+.+.+ +.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 5679999999999999999999621100 00 0 0001111122344455 67789999
Q ss_pred CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
||+.+|...+...++.+|++|+|+|++++.+.... ..| ..+... ++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999998777665 333 444444 7999999999999653
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=5.8e-22 Score=156.81 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=103.9
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCCC------------------------------CCccccceeEEEE
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV 48 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~ 48 (198)
|.+...++|+++|+.++|||||+++|+.. .+.... ...+.+.....+.
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 66778899999999999999999999864 332110 0011111111122
Q ss_pred ECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHH------HHHHHHHhhhCCCCCEEEEeecCCc
Q 029144 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA------KKWIPELRHYAPGVPIILVGTKLDL 122 (198)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~p~iiv~nK~Dl 122 (198)
.. ...+.+|||||+++|...+...++.+|++|+|+|+++ .+++... .+....+... .-.|+++++||+|+
T Consensus 81 ~~--~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl 156 (435)
T 1jny_A 81 TK--KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDL 156 (435)
T ss_dssp CS--SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGG
T ss_pred cC--CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccC
Confidence 23 3568899999999999888889999999999999998 5555321 2222222222 12468999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHHH
Q 029144 123 RDDKQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 170 (198)
.+... .........+++..++...++ .+++++||++|.|+.+++
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 157 TEPPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp SSSTT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 76210 000001234566777777663 479999999999997544
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=1.4e-21 Score=153.35 Aligned_cols=167 Identities=19% Similarity=0.169 Sum_probs=114.0
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC--------CCCCC--CCC-----ccccce-eEEEEECCeEEEEEEEeCCCccC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD--YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~--------~~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~ 66 (198)
....++|+++|++++|||||+++|... .+... ... +.+..+ .....+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 446789999999999999999999873 11100 000 011111 12222333335677999999999
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEE 145 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
|...+...++.+|++|+|+|++++...+. .+++..+... ++| +++++||+|+.++.. ......++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~ 156 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD 156 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence 98888888999999999999998765443 3555555554 788 889999999974221 00012345566
Q ss_pred HHHHcCC----CEEEEeccCCCCC------------------HHHHHHHHHHHHcCC
Q 029144 146 LRKLIGA----PVYIECSSKTQQN------------------VKAVFDAAIKVVLQP 180 (198)
Q Consensus 146 ~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~ 180 (198)
+...+++ .+++++||++|.| +.++++.+.+.+..+
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 6666653 4799999999987 888888888877544
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=3.6e-21 Score=152.28 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=102.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCCCC------------------------------CCccccceeEEEEECC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVDG 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~ 51 (198)
...++|+++|++++|||||+++|+... +.... ...+.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 357899999999999999999996431 11110 0011111112222333
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhH------HHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY------ENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 124 (198)
..+.||||||+++|...+...++.+|++++|+|++++... ... .+.+..+... +.| +++|+||+|+..
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPT 169 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence 5788999999999999888899999999999999886431 111 2223333333 677 999999999964
Q ss_pred ccccccCCCCCccccHHHHHHHHHHcCC-----CEEEEeccCCCCCHHHHHH
Q 029144 125 DKQFLADHPGAVPITTAQGEELRKLIGA-----PVYIECSSKTQQNVKAVFD 171 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 171 (198)
... .........++...+....++ .+++++||++|.|+.++++
T Consensus 170 ~~~----~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNW----SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cch----HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 210 000001223444555555553 2699999999999999654
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=7.6e-21 Score=154.80 Aligned_cols=168 Identities=16% Similarity=0.143 Sum_probs=106.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----CCccccceeEEE-------------EECCeEEEEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANV-------------VVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~l~i~D~~G~~~ 66 (198)
.+..+|+++|++++|||||++++++..+.... ..+.+..+.... ..+.....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876443221 112211111000 0000112478999999999
Q ss_pred cccccccccCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC-------CCCCc
Q 029144 67 YNRLRPLSYRGADVFLLAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD-------HPGAV 136 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-------~~~~~ 136 (198)
|..++...++.+|++|+|+|+++ +.+++.. ..+... ++|+++++||+|+.+....... .....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999999 5555433 233333 7999999999999753110000 00000
Q ss_pred ccc---HH---HHHHHHHHcC--------------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 137 PIT---TA---QGEELRKLIG--------------APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 137 ~~~---~~---~~~~~~~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
.+. .+ +......+.+ ..+++++||++|.|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 000 00 1111111111 227899999999999999999998764
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.2e-22 Score=139.38 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=84.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCC---CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCC---
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~--- 77 (198)
.+.++|+++|.+|+|||||++++.+..+.. .+.++....+ ..+.+.+||+||++.+...+..++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 457899999999999999999999887543 1222221111 23567799999999998888777765
Q ss_pred -CcEEEEEEECC-ChhhHHHHHHHHHHHHh-h----hCCCCCEEEEeecCCccccc
Q 029144 78 -ADVFLLAFSLI-SKASYENVAKKWIPELR-H----YAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~-~----~~~~~p~iiv~nK~Dl~~~~ 126 (198)
+|++++|+|++ +..++... ..|+..+. . ..++.|+++|+||+|+.+..
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 89898887 44444333 2 12589999999999997653
No 159
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=1.8e-20 Score=144.70 Aligned_cols=161 Identities=20% Similarity=0.150 Sum_probs=107.7
Q ss_pred eE-EEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccC---------ccccccccc
Q 029144 7 IK-CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY 75 (198)
Q Consensus 7 ~~-i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~ 75 (198)
++ |+++|.+|+|||||++++.+.... .++..++.+.....+.+++ ..+.+|||+|.-. |.+.+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 999999999999999999987642 2333444555666777877 4567999999622 222222 46
Q ss_pred CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-C
Q 029144 76 RGADVFLLAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-G 151 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (198)
..+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+.+... ....+.+..++... .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence 7899999999999876 44443 55555555543 5789999999999965321 01112333344444 2
Q ss_pred -CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 152 -APVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 152 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.++++++||+++.|++++++.|.+.+...
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 22688999999999999999999877543
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=4.1e-21 Score=153.82 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=97.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC------------------------------CCCccccceeEEEEECC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVDG 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (198)
...+||+++|.+++|||||+++|+... +... ....+.+... ..+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEec
Confidence 356899999999999999999997541 1100 0011111111 12222
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 126 (198)
....+.||||||+++|...+...++++|++|+|+|++++.++.. ...+.+..+... ...|+++|+||+|+.+..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence 33678899999999999998899999999999999998754321 112222333322 235799999999997632
Q ss_pred ccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144 127 QFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA 168 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (198)
. .......++...+....+. .+++++||++|.|+++
T Consensus 188 ~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 Q------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp H------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred H------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1 0000112233444444433 3789999999999875
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=5.2e-21 Score=149.78 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=112.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC-------CCCC--CCC-----ccccce-eEEEEECCeEEEEEEEeCCCccCccc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT-------FPTD--YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~-------~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (198)
..++|+++|+.++|||||+++|.... +... ... ..+..+ .....+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 1000 000 000001 01122322335677999999999988
Q ss_pred ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144 70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK 148 (198)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (198)
.+...++.+|++|+|+|++++...+.. +++..+... ++| +++++||+|+.++.. ......++..+++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT 150 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence 888889999999999999986554433 333444444 788 689999999975221 00022345667777
Q ss_pred HcCC----CEEEEeccCCCCC----------HHHHHHHHHHHHcCCC
Q 029144 149 LIGA----PVYIECSSKTQQN----------VKAVFDAAIKVVLQPP 181 (198)
Q Consensus 149 ~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~~ 181 (198)
.+++ .+++++||++|.| +.++++.+.+.+..+.
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 7663 3799999999764 8999999988776543
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=1.2e-22 Score=161.96 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=106.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (198)
++..+|+++|+.++|||||++++....+.....+... +.....+.+++ ..+.||||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 5778999999999999999999987544332222111 11111222344 35679999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC-CCEEEEeccC
Q 029144 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG-APVYIECSSK 161 (198)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 161 (198)
+|+|++++...+.. +.+..+... +.|+++++||+|+........... .... ..++..++ ..+++++||+
T Consensus 80 LVVda~~g~~~qT~--e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~-l~~~-----~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 80 LVVAADDGVMPQTI--EAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNE-LSQY-----GILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp EEEETTTBSCTTTH--HHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCC-CCCC-----CCCTTCCSSSCEEEECCTT
T ss_pred EEeecccCccHHHH--HHHHHHHhc--CceEEEEEEeccccccCHHHHHHH-HHHh-----hhhHHHhCCCccEEEEeee
Confidence 99999884332222 222233333 789999999999975321000000 0000 00111222 2379999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029144 162 TQQNVKAVFDAAIKV 176 (198)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (198)
+|.|++++|+++...
T Consensus 150 tG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 150 AGTGIDELLDAILLQ 164 (501)
T ss_dssp TCTTCTTHHHHTTTT
T ss_pred eccCcchhhhhhhhh
Confidence 999999999998764
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=2.3e-20 Score=137.27 Aligned_cols=167 Identities=15% Similarity=0.103 Sum_probs=105.1
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC---CccccceeEEEEECCeEEEEEEEeCCCc--------cCccccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQ--------EDYNRLR 71 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~--------~~~~~~~ 71 (198)
....++|+++|.+|+|||||++++++........ +++..........++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3468999999999999999999999876543322 233333444555666 45679999996 3333222
Q ss_pred cccc----CCCcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144 72 PLSY----RGADVFLLAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG 143 (198)
Q Consensus 72 ~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (198)
...+ +++|++++|+|+++..... ..++..+... ..+.|+++++||+|+.+.... ........+.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~----~~l~~~~~~~l 168 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH----DYVSNTENRAL 168 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH----HHHHHCCCHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH----HHHhhcccHHH
Confidence 2223 8999999999998532221 2333333332 236899999999999653210 00000011346
Q ss_pred HHHHHHcCCCEEEEeccCC-----CCCHHHHHHHHHHHHcC
Q 029144 144 EELRKLIGAPVYIECSSKT-----QQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 179 (198)
+.+....+. .|+.+++.. +.++++++..|.+.+..
T Consensus 169 ~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 169 RELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 777777776 466555554 58999999999988864
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=6.3e-21 Score=150.90 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=102.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC----------CCCccccce-------------------e-EEEEECC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF-------------------S-ANVVVDG 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~----------~~~t~~~~~-------------------~-~~~~~~~ 51 (198)
...++|+++|+.++|||||+++|+... +... ..++++..+ . ....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999998653 1111 112211111 0 0111222
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccccccccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFLA 130 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~ 130 (198)
....+.+|||||++.|...+...+..+|++|+|+|++++...+. .+++..+... +. |+++|+||+|+.+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~--- 174 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDE--- 174 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCH---
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccH---
Confidence 23567899999999998888888999999999999998754433 2344444433 44 6999999999975211
Q ss_pred CCCCCccccHHHHHHHHHHcC--C--CEEEEeccCCCCCHHHH
Q 029144 131 DHPGAVPITTAQGEELRKLIG--A--PVYIECSSKTQQNVKAV 169 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~ 169 (198)
.......++...++..++ . .+++++||++|.|++++
T Consensus 175 ---~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 175 ---RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ---HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 000012345666677776 1 36999999999999874
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=2.2e-21 Score=144.90 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=89.8
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCC-CCCC-------CCccccc-eeEEEEECCeEEEEEEEeCCCccCc------
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY------ 67 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~-------~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~------ 67 (198)
....++|+++|.+|+|||||+++++.... ...+ .+|.... ....+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34579999999999999999999876543 3332 3333222 2233334555578999999997432
Q ss_pred -cccc-------cc-----------c--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144 68 -NRLR-------PL-----------S--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 68 -~~~~-------~~-----------~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 126 (198)
.... .. . -..+|+++++++.++.... .....++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE---KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence 1111 11 1 1237799999977652211 221345555554 79999999999996533
Q ss_pred ccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
. .....+.+.+.....+. +++++||.+++|+++++.+|.+.+
T Consensus 161 e--------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 E--------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp H--------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred H--------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 2 00112334455556677 688999999999999999998865
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=7.6e-22 Score=157.10 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=101.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCC--------ccCccccccccc
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY 75 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~~ 75 (198)
..+|+++|.+|+|||||++++.+..+. ..+.+++.+.........+ ..+.+||||| ++.+...+..++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 568999999999999999999986542 2333333333333333344 4677999999 556666777788
Q ss_pred CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144 76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY 155 (198)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (198)
+++|++++|+|..++.+..+ .++...+... +.|+++|+||+|+.+... ...++ ...+...+
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~ 161 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP 161 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence 89999999999887554443 3455556554 899999999999864321 11111 12334356
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029144 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+++||++|.|+.++++.+.+.+..
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred EEeecccccchHHHHHHHHhhccc
Confidence 899999999999999999987753
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=5.8e-21 Score=147.83 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=105.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (198)
+|+++|++++|||||+++|... ..+.+.....+..++ ..+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~-------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK-------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE-------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC-------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999811 111111112222333 457899999999998777778899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCcccccccccCCCCCcccc--HHHHHHHHHHcC--CCEEEE--ec
Q 029144 88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLDLRDDKQFLADHPGAVPIT--TAQGEELRKLIG--APVYIE--CS 159 (198)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~--~S 159 (198)
+... .... .+++..+... +.|. ++++| |+|+ +... +. .++++++....+ ..++++ +|
T Consensus 93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----------~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA----------IDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH----------HHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH----------HHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 5443 3333 4555555555 6787 88999 9999 5321 22 245555555543 237999 99
Q ss_pred cCC---CCCHHHHHHHHHHHHcCC
Q 029144 160 SKT---QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 160 a~~---~~~i~~~~~~i~~~~~~~ 180 (198)
|++ +.|++++++.|.+.+...
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcccc
Confidence 999 999999999999887543
No 168
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=7e-22 Score=152.71 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=85.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCC--------Cccccc-eeEEEEECCeEEEEEEEeCCCc-------cCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYV--------PTVFDN-FSANVVVDGSTVNLGLWDTAGQ-------EDY 67 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~--------~t~~~~-~~~~~~~~~~~~~l~i~D~~G~-------~~~ 67 (198)
..++|+++|++|+|||||+++++... +...+. +|.... .......++..+.+.+|||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999977543 322221 222211 1222233556678999999998 666
Q ss_pred ccccc-------cccCC-----------CcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144 68 NRLRP-------LSYRG-----------ADVFLLAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (198)
Q Consensus 68 ~~~~~-------~~~~~-----------~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 128 (198)
..++. .++++ .++.+++|++++ ..++......|+..+. .+.|+++|+||+|+.....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence 65554 33322 222234444443 4445554334555443 4799999999999976543
Q ss_pred ccCCCCCccccH--HHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 129 LADHPGAVPITT--AQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
+.. +++..++...++ +++++||+++.+ ++.|..+.+.+..
T Consensus 192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 333 466677777787 799999999998 7777777776643
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.7e-20 Score=152.33 Aligned_cols=156 Identities=14% Similarity=0.088 Sum_probs=100.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCC--------------------------------CCccccceeEEEEECC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~ 51 (198)
...++|+++|++++|||||+++|+.....-.. ...+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45789999999999999999999865221100 0111111122233333
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhH------HHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY------ENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
..+.||||||++.|...+...++.+|++|+|+|++++... ... .+.+..+... ...|+++|+||+|+.+.
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccch
Confidence 5678999999999999988999999999999999875310 111 2222233322 23459999999999763
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHH
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAV 169 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 169 (198)
.. .......++...+....++ .+++++||++|.|+.++
T Consensus 321 ~~------~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQ------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CH------HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hH------HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21 0000123344445555443 37999999999999876
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=1.5e-20 Score=149.54 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=102.6
Q ss_pred CC-CCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------------------------------CCCccccceeEEE
Q 029144 1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV 47 (198)
Q Consensus 1 m~-~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~ 47 (198)
|. +...++|+++|++++|||||+++|+.. .+... ....+.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 55 345799999999999999999999864 22110 0001111111222
Q ss_pred EECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhhCCCCC-EEEEeecC
Q 029144 48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE---NVAKKWIPELRHYAPGVP-IILVGTKL 120 (198)
Q Consensus 48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~ 120 (198)
..++ ..+.+|||||+++|...+...++.+|++|+|+|++++.. |+ .. .+.+..+... +.| +++|+||+
T Consensus 81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~~--~v~~iivviNK~ 155 (458)
T 1f60_A 81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFTL--GVRQLIVAVNKM 155 (458)
T ss_dssp ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHHT--TCCEEEEEEECG
T ss_pred ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHHc--CCCeEEEEEEcc
Confidence 2333 678899999999999888889999999999999987642 21 22 2222333333 565 89999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHH
Q 029144 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAV 169 (198)
Q Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 169 (198)
|+.+... .......++...++...++ .+++++||++|.|+.++
T Consensus 156 Dl~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 156 DSVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9973110 0001233455666666663 37999999999998743
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=3.4e-21 Score=153.52 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=90.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhh--CCCCC------------------------C------CCCccccceeEEEEEC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D------YVPTVFDNFSANVVVD 50 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~--~~~~~------------------------~------~~~t~~~~~~~~~~~~ 50 (198)
....++|+++|+.++|||||+++|+. +.+.. + ....+...-...+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 44578999999999999999999974 22210 0 0000100001122334
Q ss_pred CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 029144 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKLDLR 123 (198)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 123 (198)
+ ..+.||||||+++|...+...++.+|++|+|+|++++. +|+ .. .+.+..+... ++| +++++||+|+.
T Consensus 120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l~~~~~~--~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEP 194 (467)
T ss_dssp S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTST
T ss_pred C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcH-HHHHHHHHHc--CCCEEEEEEECccCC
Confidence 4 56789999999999998888999999999999999863 221 11 1222222333 677 99999999996
Q ss_pred cccccccCCCCCccccHHHHHHHHHHc-CC-----CEEEEeccCCCCCHHHHH
Q 029144 124 DDKQFLADHPGAVPITTAQGEELRKLI-GA-----PVYIECSSKTQQNVKAVF 170 (198)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~ 170 (198)
.... .........++...++... ++ .+++++||++|.|+.+++
T Consensus 195 ~~~~----~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQW----SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSS----CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred Cccc----cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 4210 0000012334556666655 43 269999999999998755
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=5.3e-21 Score=144.41 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=100.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCC------CCCc-----------------------cccc-------------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPT-----------------------VFDN------------- 42 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~------~~~t-----------------------~~~~------------- 42 (198)
...+|+++|.+|+|||||++++.+..+... ..|+ +.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 467999999999999999999998876321 1121 1100
Q ss_pred ----------eeEEEEECCeEEEEEEEeCCCccC-------------cccccccccCCCcEEE-EEEECCChhhHHHHHH
Q 029144 43 ----------FSANVVVDGSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFL-LAFSLISKASYENVAK 98 (198)
Q Consensus 43 ----------~~~~~~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 98 (198)
....+... ....+.+|||||... +......+++.++.++ +|+|+++..+..+. .
T Consensus 105 g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-H
T ss_pred ccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-H
Confidence 00000011 025678999999642 3344556777887666 79999876554443 3
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH--HHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL--RKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 99 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
.+...+... +.|+++|+||+|+.+... ...+..... ....++.+++++||++|.|++++++.+.+.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 455555543 799999999999976432 112222110 011133367889999999999999998873
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=6.5e-20 Score=156.31 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=112.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCC-------CCC--CC-----CCccccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------FPT--DY-----VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~-------~~~--~~-----~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (198)
...++|+++|+.++|||||+++|.... +.. .. ..+.+..+ ...+.++.....+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 356899999999999999999998631 000 00 00111111 0112233333667899999999998
Q ss_pred cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144 69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR 147 (198)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (198)
..+...++.+|++|+|+|++++...+. .+++..+... ++| +++++||+|+.++.. ......+++..+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~elL 442 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVRELL 442 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHHH
Confidence 888888999999999999998754433 2444455554 788 789999999975321 0001334566677
Q ss_pred HHcCC----CEEEEeccCCC--------CCHHHHHHHHHHHHcCC
Q 029144 148 KLIGA----PVYIECSSKTQ--------QNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 148 ~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~ 180 (198)
...++ .+++++||++| .|+.++++.|.+.+..+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 76653 37999999999 46899999998877543
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=1.4e-19 Score=129.76 Aligned_cols=162 Identities=13% Similarity=-0.016 Sum_probs=100.6
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCc----------cccc
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY----------NRLR 71 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~ 71 (198)
.....+|+++|++|+|||||++++.+..+...+.++.+... ...+.+++ .+.+||+||.... ....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 44668999999999999999999987764333344443322 22233333 3569999997431 2111
Q ss_pred cccc---CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144 72 PLSY---RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK 148 (198)
Q Consensus 72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (198)
..++ ..++++++++|++++.+.... .+...+... +.|+++++||+|+.+... +....+.+..++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence 2223 468899999999887655332 222333333 789999999999865321 0112345556665
Q ss_pred HcC-CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 149 LIG-APVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
..+ ...++++||+++.|++++++.|.+.+..
T Consensus 168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 554 2367899999999999999999988754
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=1.8e-19 Score=133.74 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=85.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccC------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR------ 76 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~------ 76 (198)
+.++|+++|..|+|||||++++++... ...+.+++.......+..++ ..+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 679999999999999999999998764 34444555444555556666 46779999999887655544433
Q ss_pred ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccc
Q 029144 77 ---GADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDD 125 (198)
Q Consensus 77 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~ 125 (198)
++|++++|++++... +......|+..+..... ..|+++|+||+|+.+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 33332466666665432 2499999999999643
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3.7e-21 Score=156.97 Aligned_cols=165 Identities=17% Similarity=0.178 Sum_probs=91.2
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------------------------------CCCccccceeEEEEECC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVVVDG 51 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (198)
...++|+++|++++|||||+++|+.. .+... ...++.+.....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 35789999999999999999999642 11100 000111111111222
Q ss_pred eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh---hH--HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 029144 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SY--ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (198)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 125 (198)
....+.||||||++.|...+...++.+|++|+|+|++++. .+ .....+.+..+... ++| +++|+||+|+.+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 2367789999999999999989999999999999998642 11 11112222333333 565 9999999999752
Q ss_pred cccccCCCCCccccHHHHHHHH-HHcCCC----EEEEeccCCCCCHH--------------HHHHHHHHHHc
Q 029144 126 KQFLADHPGAVPITTAQGEELR-KLIGAP----VYIECSSKTQQNVK--------------AVFDAAIKVVL 178 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~Sa~~~~~i~--------------~~~~~i~~~~~ 178 (198)
.. ........+...+. ...++. +++++||++|.|+. ++++.|.+.+.
T Consensus 331 ~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 331 SE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 11 00001223344444 444542 69999999999998 67777766443
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.80 E-value=2.8e-18 Score=138.34 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=80.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCCCC--------CCCcc----------c---cceeEEEEECCeEEEEEEEeC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--------YVPTV----------F---DNFSANVVVDGSTVNLGLWDT 61 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~--------~~~t~----------~---~~~~~~~~~~~~~~~l~i~D~ 61 (198)
+..+|+++|++|+|||||+++++.. .+... ...+. + ......+.+.+ +.+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 5789999999999999999999863 11000 00000 0 00112233344 67889999
Q ss_pred CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
||+..|...+..+++.+|++|+|+|++++..... ..+...+... ++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 9999999888889999999999999988654332 3444444443 8999999999999754
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=5.1e-19 Score=146.35 Aligned_cols=116 Identities=20% Similarity=0.102 Sum_probs=81.8
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc----------------c-cceeEEEEECCeEEEEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----------------F-DNFSANVVVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (198)
++..+|+++|+.|+|||||++++...........+. + ........+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999998433211111100 0 11111222222236788999999999
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
|...+...++.+|++++|+|+++....... .++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888899999999999999877554443 444555544 79999999999997
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=4.9e-20 Score=139.20 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=108.6
Q ss_pred HHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh-hHHHHHH
Q 029144 21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAK 98 (198)
Q Consensus 21 tli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 98 (198)
+|+.++..+.+. +.+.||.++.+...+..++ .+++||+ +++|.++++.+++++|++|+|||++++. ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 678888888888 7889999877664432232 5779999 8999999999999999999999999997 67666 7
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC--CCEEEEeccCCCCCHHHHHHHHHH
Q 029144 99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG--APVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 99 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
.|+..+... ++|+++|+||+|+.+... + +++.+++..++ . +++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~~--~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEKN--ELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHT--TCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHC--CCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence 888777664 899999999999976432 2 45666676666 5 7999999999999999987754
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=7.8e-19 Score=145.81 Aligned_cols=170 Identities=12% Similarity=0.141 Sum_probs=107.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccc--------cceeEEEEE--------------------------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVF--------DNFSANVVV-------------------------- 49 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~--------~~~~~~~~~-------------------------- 49 (198)
..++|+|+|.+|+|||||+|++++..+.. ...|++. ........+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 57899999999999999999999876422 2223331 000001111
Q ss_pred --------------------CCeE--EEEEEEeCCCccC---cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029144 50 --------------------DGST--VNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL 104 (198)
Q Consensus 50 --------------------~~~~--~~l~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (198)
+... ..+.+|||||... ....+..+++++|++++|+|++++.+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0000 2478999999654 334455677899999999999988877766 5555555
Q ss_pred hhhCCCCCEEEEeecCCcccccccccCCCCCccc--cHHHHHH-----HHHHcC-------CCEEEEeccC---------
Q 029144 105 RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI--TTAQGEE-----LRKLIG-------APVYIECSSK--------- 161 (198)
Q Consensus 105 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~Sa~--------- 161 (198)
... +.|+++|+||+|+...... +....... ..+.... +....+ ..+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 544 7899999999999754310 00000000 0001111 111111 1258999999
Q ss_pred -----CCCCHHHHHHHHHHHHcC
Q 029144 162 -----TQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 162 -----~~~~i~~~~~~i~~~~~~ 179 (198)
++.|+++++..+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=5.2e-18 Score=126.35 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=82.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccccc---------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL--------- 73 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~--------- 73 (198)
..++|+++|.+|+|||||++++++..+. ..+.+++..........++ ..+.+|||||+..+......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5799999999999999999999987652 3333444333333344444 56789999999776543321
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC-C--CCEEEEeecCCccccc
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-G--VPIILVGTKLDLRDDK 126 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~ 126 (198)
..+.+|++++|+|++.. ++......|+..+..... + .|+++|+||+|+.+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 13468999999998653 343333466666665432 2 6999999999997543
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=5.3e-18 Score=140.73 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=83.4
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCC------C------------CCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP------T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (198)
.+..+|+++|+.|+|||||+++++.. .+. . ....|.. .....+.+.+ +.+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence 46789999999999999999999842 111 0 0011111 1122233444 6788999999
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
+..|...+...++.+|++|+|+|++++.+.... ..|. .+... +.|+++|+||+|+...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~-~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWR-QAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHH-HHHHc--CCCEEEEEECCCcccC
Confidence 999998888999999999999999998877665 4444 34444 8999999999999764
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=1.2e-17 Score=138.74 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=84.7
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhh--CCCCC-----------CC------CCccccceeEEEEECCeEEEEEEEeCCC
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (198)
..+..+|+++|++|+|||||+++++. +.+.. ++ ..++.......+.+++ +.+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 34678999999999999999999985 33211 00 0011111122344454 6778999999
Q ss_pred ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
+..|...+...++.+|++++|+|++++.+.... ..|. .+... +.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence 999998888899999999999999998777665 4443 34444 8999999999999764
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2.9e-19 Score=134.90 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=86.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC-CCCCCC--------CCccc-cceeEEEEECCeEEEEEEEeCCCc-------cCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY 67 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~-------~~~ 67 (198)
-.++|+++|++|+|||||++++.+. .++... .++.. .........++....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999998764 333322 11211 111112222344578899999998 444
Q ss_pred ccccc-------cccC-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144 68 NRLRP-------LSYR-------------GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (198)
Q Consensus 68 ~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 127 (198)
..... .+++ .+++++++.+.+. .+++.....+ +....++.|+++|+||.|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHHH
Confidence 44332 2222 1233444444322 2233332233 333334689999999999975432
Q ss_pred cccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
.....+++.+++..+++ ++|++||+++ +++++|..+.+.+....
T Consensus 173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 01234677888888887 7999999999 99999999999886543
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=2.9e-17 Score=136.57 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=82.9
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC--CCCCC-----------CCCc---cccce---eEEEEEC-----CeEEEEEEE
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------YVPT---VFDNF---SANVVVD-----GSTVNLGLW 59 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~-----------~~~t---~~~~~---~~~~~~~-----~~~~~l~i~ 59 (198)
.+..+|+++|+.|+|||||+++++.. .+... +.+. .+..+ ...+.++ +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 46789999999999999999999753 22110 0000 00001 1122222 234788999
Q ss_pred eCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 60 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
||||+.+|...+...++.+|++|+|+|+++....... ..| ..+... ++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCcccc
Confidence 9999999998888999999999999999987665544 333 333333 7999999999999754
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=2.1e-17 Score=129.31 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc----ccccccc---cCCCc
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 79 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~~---~~~~~ 79 (198)
.|+++|++|+|||||++.+..... ...+..++.......+.+++ ...+.+||+||.... ..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999987632 12233333222223344443 235679999997432 2222222 34689
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144 80 VFLLAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI 156 (198)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (198)
.+++++|++ ...+..+ ..+...+.... ...|.++|+||+|+... ...+.+.......+. +++
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~------------~~~~~l~~~l~~~g~-~vi 302 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE------------EAVKALADALAREGL-AVL 302 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------------HHHHHHHHHHHTTTS-CEE
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH------------HHHHHHHHHHHhcCC-eEE
Confidence 999999997 4455555 45555554443 26899999999999653 122344444455565 689
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144 157 ECSSKTQQNVKAVFDAAIKVVLQPPK 182 (198)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (198)
.+||+++.|+++++++|.+.+.....
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEECCCccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999998865443
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=5.3e-19 Score=134.42 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=69.7
Q ss_pred EEEEEEeCCCccC-------------cccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029144 54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK 119 (198)
Q Consensus 54 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (198)
..+.+|||||... +......+++.+|++++|+|..+.. ..... ..+...+... +.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~~--~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCCC--CCcEEEEEcC
Confidence 4578999999753 3344556778999999999974332 11111 2344444443 7999999999
Q ss_pred CCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC---C---CCCHHHHHHHHHHHHcCC
Q 029144 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK---T---QQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~i~~~~~~~ 180 (198)
+|+.+... ...+.+.......+. .++++|+. + +.|+.+++..+.+.+...
T Consensus 208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99976431 112222210011112 45665554 4 789999999998887654
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=7e-19 Score=136.12 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=96.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cce------------------------------------------
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF------------------------------------------ 43 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~------------------------------------------ 43 (198)
.+|+|+|.+|+|||||++++.+..+......+.. ...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3899999999999999999999765332221110 000
Q ss_pred ----------eEEEEE-CCeEEEEEEEeCCCccCc-------------ccccccccCCCcEEEEEEECCChhhHHHHHHH
Q 029144 44 ----------SANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFLLAFSLISKASYENVAKK 99 (198)
Q Consensus 44 ----------~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 99 (198)
...+.+ ......+.+|||||...+ ......+++++|++|+|+|..+.+........
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 000000 011235789999998776 34455678899999999987654332211123
Q ss_pred HHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHH
Q 029144 100 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172 (198)
Q Consensus 100 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (198)
+...+... +.|+++|+||+|+.+... ...+....+....+. +|+++|+.++.++++.+..
T Consensus 195 l~~~~~~~--~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 195 ISREVDPS--GDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHSCTT--CTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred HHHHhccc--CCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence 33333333 789999999999976542 333334444444555 6888999988877765543
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=131.53 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=82.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCC--------CCccc-cceeEEEEECCeEEEEEEEeCCCccCccc-------
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR------- 69 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------- 69 (198)
.++|+++|++|+|||||++.+.+..+.... .++.. ..+.......+....+++||++|...+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 578999999999999999999987653211 11111 01111111233345789999999765411
Q ss_pred ------------------ccccccCCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144 70 ------------------LRPLSYRGADVFLLAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA 130 (198)
Q Consensus 70 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 130 (198)
....++.++++.+++|..... .++......|+..+. .+.|+|+|+||+|+.....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--- 184 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--- 184 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence 123455666655555554432 344444235666654 3799999999999976443
Q ss_pred CCCCCccccH--HHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 131 DHPGAVPITT--AQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
+.. +.+...+...++ +++++|+.++.++.++|..+.+.+
T Consensus 185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 333 566777778887 689999999999999888887754
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.3e-17 Score=130.19 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=47.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEE---------------------EECC-eEEEEEEEeCCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANV---------------------VVDG-STVNLGLWDTAG 63 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~---------------------~~~~-~~~~l~i~D~~G 63 (198)
++|+++|.+|+|||||++++.+... ..++..++........ .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998752 2234334432222211 1222 247799999999
Q ss_pred ccCc----ccccc---cccCCCcEEEEEEECCCh
Q 029144 64 QEDY----NRLRP---LSYRGADVFLLAFSLISK 90 (198)
Q Consensus 64 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 90 (198)
.... ..+.. ..++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 456899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=3.3e-17 Score=118.33 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=94.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-------------eEEEEECC------------------eE
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVDG------------------ST 53 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~ 53 (198)
+..+|+++|.+|+|||||++++................. .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 467999999999999999999986521110000000000 00011111 12
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+.+.+|||+|+..... .+-...+.+++|+|+.+..... ..+... . +.|.++|+||+|+.+...
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~---~--~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEI---F--RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHH---H--HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhh---h--hcCCEEEEecccCCcchh------
Confidence 4577999999511111 1112467899999987754221 111111 2 578999999999965321
Q ss_pred CCccccHHHHHHHHHHcC-CCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144 134 GAVPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (198)
...++........+ ..+++++||++|.|++++++++.+.+....
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555555543 237999999999999999999999886543
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=4.3e-15 Score=114.01 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=56.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcc--
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN-- 68 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~-- 68 (198)
++|+++|.+|+|||||++++.+... ..++..++.......+.+++. ...+.+||+||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999998753 233333332222233444442 1468899999987763
Q ss_pred --ccccc---ccCCCcEEEEEEECCC
Q 029144 69 --RLRPL---SYRGADVFLLAFSLIS 89 (198)
Q Consensus 69 --~~~~~---~~~~~~~~i~v~d~~~ 89 (198)
.+... .++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23322 3688999999999986
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=1.5e-17 Score=128.38 Aligned_cols=158 Identities=22% Similarity=0.177 Sum_probs=93.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC------CCc-----------------------ccc-----------c--
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPT-----------------------VFD-----------N-- 42 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~------~~t-----------------------~~~-----------~-- 42 (198)
...+|+|+|.+|+|||||++++.+..+.+.. .|+ +.. .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999987763211 122 000 0
Q ss_pred -----e---eEEEEEC-CeEEEEEEEeCCCccC-------------cccccccccCCCc-EEEEEEECCChhhHHHHHHH
Q 029144 43 -----F---SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFLLAFSLISKASYENVAKK 99 (198)
Q Consensus 43 -----~---~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~ 99 (198)
+ ...+.+. .....+.+|||||... +..+...++.+++ ++++|+|++....-.+. ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 0 0001110 0124688999999642 2334445555555 55566676553332222 23
Q ss_pred HHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH--HHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 100 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE--LRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 100 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
+...+... +.|+++|+||+|+.+... ...+.... +....++.+++++||+++.|++++++.+.+
T Consensus 189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCTT--CTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCcC--CCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 44444443 799999999999975431 11111110 111123335778999999999999998876
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.7e-17 Score=120.28 Aligned_cols=153 Identities=17% Similarity=0.092 Sum_probs=91.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-------------EEEEEC-Ce------------------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------------ANVVVD-GS------------------ 52 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~------------------ 52 (198)
+..+|+++|.+|+|||||++++....+...+.++....+. ..+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999977554433333322111 112221 11
Q ss_pred -EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144 53 -TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD 131 (198)
Q Consensus 53 -~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 131 (198)
...+.++|++|.-.-.. .+-...+..+.++|+........ .+... . +.|.++|+||+|+.+...
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHHT----
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchhH----
Confidence 11345666666311000 01112345667777533221111 00111 1 578999999999976432
Q ss_pred CCCCccccHHHHHHHHHHcC-CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 132 HPGAVPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
...++...++...+ ..+++++||++|.|++++|+++.+.+.
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 35566666666542 237999999999999999999988764
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.66 E-value=3.3e-15 Score=120.96 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=83.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--C---------------CCCCCCcc------ccceeEEEEECCeEEEEEEEeC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT--F---------------PTDYVPTV------FDNFSANVVVDGSTVNLGLWDT 61 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~--~---------------~~~~~~t~------~~~~~~~~~~~~~~~~l~i~D~ 61 (198)
+.=+|+|+|+.++|||||..+++... + ..++.+.. ...-...+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 45689999999999999999986311 0 00111111 011123344555 67789999
Q ss_pred CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
||+.+|.......++-+|++|+|+|+..+-..+.. ..| .....+ ++|.++++||+|....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHHh--CCceEEEEecccchhc
Confidence 99999999999999999999999999988766655 444 455555 8999999999998754
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.65 E-value=1.5e-16 Score=122.70 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=69.1
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+.+.||||||... .....+..+|++++|+|....+....+ . ....+.|+++|+||+|+.+...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence 5677999999532 222345789999999998766544322 1 1112469999999999965321
Q ss_pred CCccccHHHHHHHHHHc-----C-CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144 134 GAVPITTAQGEELRKLI-----G-APVYIECSSKTQQNVKAVFDAAIKVVLQ 179 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (198)
......+........ + ..+++++||++|.|+++++++|.+.+..
T Consensus 235 --~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 --ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp --HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 000111222221112 1 1379999999999999999999987743
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=3.5e-16 Score=132.32 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=85.2
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------C--------C--CccccceeEEEEE--------------C
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------Y--------V--PTVFDNFSANVVV--------------D 50 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------~--------~--~t~~~~~~~~~~~--------------~ 50 (198)
..+..+|+++|+.++|||||+++++.. .+... + . .|.... ...+.+ +
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~-~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKST-AISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCC-EEEEEEECCHHHHHHCSSCCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeec-eeEEEeccccccccccccccc
Confidence 346789999999999999999999864 11110 0 0 011111 111112 3
Q ss_pred CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
+..+.+++|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.... .. +.|+++|+||+|+..
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQAL-GE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHH-HT--TCEEEEEEECHHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-Hc--CCCeEEEEECCCcch
Confidence 3468899999999999999999999999999999999998888776 4454333 23 799999999999974
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=3.3e-16 Score=126.87 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=79.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC---CCCCCccccceeEEE----------------------------------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANV---------------------------------- 47 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~---~~~~~t~~~~~~~~~---------------------------------- 47 (198)
...+|+|+|.+|+|||||+|++++..+. ....+++. .+....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 5689999999999999999999988753 22222221 110000
Q ss_pred ----EECCe-EEEEEEEeCCCccC-----------cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC
Q 029144 48 ----VVDGS-TVNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV 111 (198)
Q Consensus 48 ----~~~~~-~~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (198)
.+++. ...+.||||||... |...+..++..+|++++|+|+++....... ..++..+... +.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--ED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CC
Confidence 00000 02478999999864 334445567889999999999875444444 4666666554 68
Q ss_pred CEEEEeecCCcccc
Q 029144 112 PIILVGTKLDLRDD 125 (198)
Q Consensus 112 p~iiv~nK~Dl~~~ 125 (198)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999999754
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=2.4e-14 Score=110.44 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=55.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECC-------------------eEEEEEEEeCCCccC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED 66 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~i~D~~G~~~ 66 (198)
++|+++|.+|+|||||++++.+... ..++..++.........+++ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999987642 23343333222222222221 235688999999876
Q ss_pred ccc----ccc---cccCCCcEEEEEEECCC
Q 029144 67 YNR----LRP---LSYRGADVFLLAFSLIS 89 (198)
Q Consensus 67 ~~~----~~~---~~~~~~~~~i~v~d~~~ 89 (198)
+.+ +.. ..++++|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 542 211 23688999999999975
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=4.5e-16 Score=119.70 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=61.1
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+.+.++||||.... .......+|++++|+|++.+...+.. .. .+ -..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence 45679999995321 22345789999999999876433222 11 11 1468899999999964211
Q ss_pred CCccccHHHHHHHHH---H------cCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 134 GAVPITTAQGEELRK---L------IGAPVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~---~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
. ......+.. . ...++++.+||+++.|+++++++|.+.+
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1 011112211 1 1124788999999999999999998875
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=1.4e-14 Score=107.11 Aligned_cols=118 Identities=12% Similarity=-0.050 Sum_probs=68.7
Q ss_pred EEEEEEeCCCccCcccccc------cccCCCcEEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccc
Q 029144 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRD 124 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~ 124 (198)
+.+.+|||||+..+..... ..+.. +++++++|+....+.......+ ...... .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 4678999999876543321 13356 8899999876433332221111 111222 2789999999999975
Q ss_pred ccccccCCCCCccc--cHHHHH-H-----------------HHHHcCC-CEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 125 DKQFLADHPGAVPI--TTAQGE-E-----------------LRKLIGA-PVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~~~-~-----------------~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
..... ..... ..+... . ++..++. .+++++||+++.|++++++++.+.+.
T Consensus 186 ~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKE----RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHH----HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHH----HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 42100 00000 000000 0 1234332 26899999999999999999988763
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.56 E-value=1.5e-15 Score=116.55 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=65.2
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+.+.||||||...... .....+|++++|+|++..+..... .. .. . +.|.++|+||+|+.+...
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~--~--~~p~ivv~NK~Dl~~~~~------ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK---GL--M--EVADLIVINKDDGDNHTN------ 211 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH---HH--H--HHCSEEEECCCCTTCHHH------
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH---hh--h--cccCEEEEECCCCCChHH------
Confidence 5678999999754332 245789999999999765432211 10 00 1 468899999999965321
Q ss_pred CCcccc--HHHHHHHHHHcC------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 134 GAVPIT--TAQGEELRKLIG------APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
.. .++.+......+ .++++++||++|.|++++++.|.+.+.
T Consensus 212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 112222222222 347899999999999999999998764
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=7e-15 Score=122.02 Aligned_cols=157 Identities=21% Similarity=0.144 Sum_probs=96.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccc------------------------------------------
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDN------------------------------------------ 42 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~------------------------------------------ 42 (198)
..+|+|+|.+++|||||++++++..+ +.....++...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 45999999999999999999998765 21111111000
Q ss_pred ---------eeEEEEECCeEEEEEEEeCCCccCc-------------cccccccc-CCCcEEEEEEECCChhhHHHHHHH
Q 029144 43 ---------FSANVVVDGSTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFLLAFSLISKASYENVAKK 99 (198)
Q Consensus 43 ---------~~~~~~~~~~~~~l~i~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~ 99 (198)
....+...+ ...+.|+||||...- ......++ ..+|++++|+|++.+....+. ..
T Consensus 131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ 208 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 208 (772)
T ss_dssp STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence 000111111 124679999996431 11222223 578999999999876444333 24
Q ss_pred HHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH--HHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 100 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE--LRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 100 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
++..+... +.|+++|+||+|+.+... ........ +....++.+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 55555554 799999999999976432 11111110 0001233456779999999999999999873
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=5.7e-15 Score=121.72 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=80.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh--CCCCCC-----------CCCcc---ccce---eEEEEECCeEEEEEEEeCCCccC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTD-----------YVPTV---FDNF---SANVVVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~--~~~~~~-----------~~~t~---~~~~---~~~~~~~~~~~~l~i~D~~G~~~ 66 (198)
.-+|+|+|+.++|||||..+++. +.+... +.+.. +-.+ ...+.+++ +.++++|||||.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 34799999999999999999873 222110 00000 0001 11123344 6678999999999
Q ss_pred cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
|.......++-+|++|+|+|+..+-..+.. ......... ++|.++++||+|....
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence 999999999999999999999887655543 334455555 7999999999998654
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.2e-13 Score=105.06 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=91.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-------ccccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~ 77 (198)
..+|.++|.||+|||||+|++.+... ..++..|+.+.....+.+++ ..++++|+||...-.+.. ...++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 45899999999999999999997542 45677788888888888888 456799999964322111 123567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG 151 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
+|++++|+|++++..-......-+..........|.+++.||.|...-.. .........+.++.+.+...+.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTT
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhc
Confidence 99999999999875433221222222222224678899999999754221 1111112245556555555543
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=2.2e-13 Score=113.67 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=80.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--------CCCCC--CCCccccce---------eEEEEECC-----eEEEEEEEe
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD--YVPTVFDNF---------SANVVVDG-----STVNLGLWD 60 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~--------~~~~~--~~~t~~~~~---------~~~~~~~~-----~~~~l~i~D 60 (198)
+.=+|+|+|+.++|||||..+|+.. ..... +..+..... ...+.+.+ ..+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4458999999999999999888731 11110 111111111 11222321 358899999
Q ss_pred CCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
||||-+|.......++-+|++|+|+|+..+-..+.. .-| ...... ++|.++++||+|....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~-~~a~~~--~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVW-RQANKY--GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHH-HHHHHH--TCCEEEEEECSSSTTC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHH-HHHHHc--CCCeEEEEccccccCc
Confidence 999999999999999999999999999887666554 344 444444 7999999999998643
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=1.6e-13 Score=103.52 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=79.6
Q ss_pred ccCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc-HH
Q 029144 64 QEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT-TA 141 (198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~ 141 (198)
++++..+.+.+++++|++++|+|++++. ++..+ ..|+..+... ++|+++|+||+|+.++.. +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence 6788888888999999999999999986 77766 7888777664 899999999999975431 22 34
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144 142 QGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175 (198)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (198)
+...+....+. +++++||++|.|+++++..+..
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence 55666667777 7999999999999999987643
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=95.12 Aligned_cols=105 Identities=7% Similarity=-0.046 Sum_probs=69.7
Q ss_pred CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHH---HHHHhhh--CCCCCEEEEeecC-CcccccccccCCCCC
Q 029144 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKW---IPELRHY--APGVPIILVGTKL-DLRDDKQFLADHPGA 135 (198)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~iiv~nK~-Dl~~~~~~~~~~~~~ 135 (198)
+||+.++.+|.+++.+.|++|||+|.+|.+-.+ ...++ ...+... ..+.|++|.+||. |++..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---------- 178 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------- 178 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB----------
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC----------
Confidence 388999999999999999999999999875433 32333 3344332 2588999999995 67543
Q ss_pred ccccHHHHHHHHH----HcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 136 VPITTAQGEELRK----LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 136 ~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.+..++.+... ...+ .+..|||.+|+|+.+.++|+.+.+..+
T Consensus 179 --ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 179 --MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp --CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred --CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 44444433221 1233 467899999999999999999877544
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=4.9e-13 Score=102.32 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=62.9
Q ss_pred EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP 133 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 133 (198)
+.+.|+||||...-. ......+|.+++++|+..++..+.+ .. .+. ..|.++++||+|+.+...
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchh------
Confidence 567799999974321 1234689999999998754332111 11 111 245677889999754221
Q ss_pred CCccccHHHHHHHHHHc---C------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 134 GAVPITTAQGEELRKLI---G------APVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
......+.+.... . .++++.+||+++.|++++++.|.+.+.
T Consensus 211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222233332211 1 246888999999999999999988653
No 210
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.27 E-value=6.9e-12 Score=92.42 Aligned_cols=106 Identities=7% Similarity=-0.052 Sum_probs=74.0
Q ss_pred CCCccCcccccccccCCCcEEEEEEECCChhhHH---HHHHHHHHHHhhh--CCCCCEEEEeec-CCcccccccccCCCC
Q 029144 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE---NVAKKWIPELRHY--APGVPIILVGTK-LDLRDDKQFLADHPG 134 (198)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~--~~~~p~iiv~nK-~Dl~~~~~~~~~~~~ 134 (198)
.+||+.++..|.+++.+.|++|||+|.+|.+-++ ++ .++...+... ..+.|++|.+|| .|++..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 4688999999999999999999999999876433 22 2233444332 358999999996 588643
Q ss_pred CccccHHHHHHHHH----HcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144 135 AVPITTAQGEELRK----LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180 (198)
Q Consensus 135 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (198)
.+..++.+... ...+ .+..|||.+|+|+.+.++|+.+.+..+
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ---CCHHHHHHHcCCccCCCcE-EEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 44444433221 1233 467899999999999999999987544
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.25 E-value=4.1e-12 Score=98.46 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=49.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 68 (198)
..++|+++|.+|+|||||++++.+..+. .++..++.......+.+++. ...+.+||+||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4579999999999999999999987542 22333333333333444331 2358899999987655
Q ss_pred c-------ccccccCCCcEEEEEEECCChh
Q 029144 69 R-------LRPLSYRGADVFLLAFSLISKA 91 (198)
Q Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~ 91 (198)
+ .+...++++|++++|+|+.+.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 4 2344578999999999987643
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=3e-10 Score=88.20 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=59.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCc
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~ 67 (198)
+..+|.++|.+|+|||||++.+.+... ..++..++.......+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457899999999999999999998653 344444554445555555541 135789999996443
Q ss_pred cc-------ccccccCCCcEEEEEEECCC
Q 029144 68 NR-------LRPLSYRGADVFLLAFSLIS 89 (198)
Q Consensus 68 ~~-------~~~~~~~~~~~~i~v~d~~~ 89 (198)
.+ .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 22234578999999999863
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.09 E-value=1.4e-10 Score=89.71 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=74.3
Q ss_pred CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ 142 (198)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (198)
..++|.+....+.+.++++++|+|++++. ..|...+.....+.|+++|+||+|+.+.. ...+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 35678888888889999999999999853 34555566656689999999999997543 22233
Q ss_pred H----HHHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHH
Q 029144 143 G----EELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 143 ~----~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
. ..++...+.. .++.+||++|.|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 3 3345556653 689999999999999999998754
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=5.6e-10 Score=86.39 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=72.4
Q ss_pred CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144 63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ 142 (198)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (198)
.++.|.+....+++.++++++|+|++++.+ .|...+.....+.|+++|+||+|+.+.. ...+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~ 119 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK 119 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence 477888888888889999999999998774 2333444444589999999999997643 22233
Q ss_pred H----HHHHHHcCC--CEEEEeccCCCCCHHHHHHHHHHHH
Q 029144 143 G----EELRKLIGA--PVYIECSSKTQQNVKAVFDAAIKVV 177 (198)
Q Consensus 143 ~----~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (198)
. ...+...+. ..++.+||++|.|++++++.+.+..
T Consensus 120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3 333555565 3689999999999999999998765
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=2.7e-08 Score=77.88 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=61.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCC----Ccc-ccceeEEEEECCeEEEEEEEeCCCccCccc-----------
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------- 69 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~----~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------- 69 (198)
.++++|+|++|+|||||++.+.+..+..... +.. ...+.......+....+.++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999998765432111 111 111111111122234678999998532100
Q ss_pred ---c-----------cc--cccCCC--cE-EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 70 ---L-----------RP--LSYRGA--DV-FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 70 ---~-----------~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
. .. .....+ |+ ++++.|...+-+..+. .++..+. .+.|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 0 00 011222 33 5556666544433333 4444444 47999999999998654
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=1.4e-08 Score=75.31 Aligned_cols=114 Identities=19% Similarity=0.168 Sum_probs=63.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCC---------CCCccccceeEEEEEC--CeEEEEEEEeCCCccCccc-----
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSANVVVD--GSTVNLGLWDTAGQEDYNR----- 69 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~---------~~~t~~~~~~~~~~~~--~~~~~l~i~D~~G~~~~~~----- 69 (198)
.++++++|+.|+|||||++.+.+...+.. ...+.. .-...+... +....+.++|++|-.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47999999999999999999886432211 001110 001111111 1223678999998321100
Q ss_pred -----------------------ccccccCCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 70 -----------------------LRPLSYRGADVFLLAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 70 -----------------------~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
.....+..+++.++++|.. .+-...+ ..++..+.. ..++++|.+|+|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence 0011233467888899854 3322222 244445544 3899999999998654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=1.3e-09 Score=87.16 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=84.3
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh------CCC----CCCCCCccc---------cceeEEEE----------------E
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS------NTF----PTDYVPTVF---------DNFSANVV----------------V 49 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~------~~~----~~~~~~t~~---------~~~~~~~~----------------~ 49 (198)
+...|+++|.+|+||||+++++.. ... .+.+.+... ..+..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 456899999999999999988872 211 011122110 00110000 0
Q ss_pred CCeEEEEEEEeCCCccCccc-cccc---c--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCc
Q 029144 50 DGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDL 122 (198)
Q Consensus 50 ~~~~~~l~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl 122 (198)
....+.+.|+||||...... ++.. . +..+|.+++|+|+........ ....+.. ..|+ .+|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence 00225677999999754221 1100 1 126899999999987643222 2223332 2575 888999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHcCCC-----------------EEEEeccCCCCC-HHHHHHHHHHH
Q 029144 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAP-----------------VYIECSSKTQQN-VKAVFDAAIKV 176 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~~-i~~~~~~i~~~ 176 (198)
..... . +.......+.+ +.+.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g----------~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG----------G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT----------H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH----------H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 64321 1 11222233331 123379999999 99999998876
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=3e-09 Score=79.38 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=67.9
Q ss_pred EEeCCCccC-cccccccccCCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144 58 LWDTAGQED-YNRLRPLSYRGADVFLLAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA 135 (198)
Q Consensus 58 i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 135 (198)
+-..|||.. ........+.++|+++.|+|+.++.+... ....|+ .+.|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~--------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA--------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence 456788853 33444556789999999999999877652 113332 489999999999996532
Q ss_pred ccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144 136 VPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178 (198)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (198)
..+....+....+. +++.+||.++.|+++++..+.+.+.
T Consensus 67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 12233344444566 6889999999999999998887764
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.83 E-value=3.5e-10 Score=87.53 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=64.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC------CC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN------TF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------- 71 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------- 71 (198)
.+|+++|.+|+|||||+|++++. .. ...+..++.. .....++.. +.++||||........
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999875 11 1122222221 112223322 5699999964322111
Q ss_pred cccc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144 72 PLSY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 126 (198)
...+ +..+.++++++....-....+ .. +..+.. .+.|+++++||.|.....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCcccccc
Confidence 1111 567899999987433111111 11 122222 378999999999997643
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.82 E-value=4.7e-08 Score=76.43 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=87.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccce--eEEEEECCeEEEEEEEeCCCccCccc-----ccccccCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNF--SANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRG 77 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~ 77 (198)
...++++|++|+|||||++.+.+...+..-.-+. +... ...+.-......+.+||++|...... +....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4579999999999999999998743221110000 0000 01111111111467999998532111 11112333
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHH----HHcC
Q 029144 78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELR----KLIG 151 (198)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~ 151 (198)
.+..++ ++...+. -.. ..+...+... +.|+++|.||.|+.--+++. .+.. .+....+..+++. .+.+
T Consensus 149 ~~~~~~-lS~G~~~-kqr--v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~-~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCCC-HHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCcc-HHH--HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 455554 7765211 111 2344444444 78999999999975211111 1111 1111222333433 1222
Q ss_pred --CCEEEEecc--CCCCCHHHHHHHHHHHHcCCC
Q 029144 152 --APVYIECSS--KTQQNVKAVFDAAIKVVLQPP 181 (198)
Q Consensus 152 --~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~ 181 (198)
....+.+|+ .++.|++++.+.+.+.+....
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 335788999 566679999999998875544
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.72 E-value=3.1e-10 Score=87.81 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=63.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--------CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc------
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP------ 72 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~------ 72 (198)
.+|+++|.+|+|||||+|++++.... ..+..|+.. .....+.+. +.++||||.........
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999875311 112222211 111222322 66999999643221110
Q ss_pred --c--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144 73 --L--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (198)
Q Consensus 73 --~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 126 (198)
. .....+.++++++....-....+ ..+..+.. .+.|+++++||+|.....
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence 1 13567888899887432111111 11112222 278999999999997643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.51 E-value=1.2e-07 Score=70.60 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=35.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCcc
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (198)
.+.++|+++|.+|+|||||+|++.+.... .....++.... .+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999976532 22222222111 122222 36699999963
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.46 E-value=9.7e-08 Score=70.41 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=33.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~ 66 (198)
++++++|.+|+|||||+|++.+...... .++.+... ...+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5899999999999999999997654221 11111111 11122222 467999999754
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.45 E-value=3.7e-07 Score=71.79 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=73.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh-----C-CC----CCCCCCcc-------ccceeEEEEE-C----------------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------FDNFSANVVV-D---------------- 50 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~-----~-~~----~~~~~~t~-------~~~~~~~~~~-~---------------- 50 (198)
++..|+++|++|+||||++..+.. + .. .+.+.+.. .......+.. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999977752 1 10 11121210 0000000110 0
Q ss_pred -CeEEEEEEEeCCCccCccc-----ccc-cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144 51 -GSTVNLGLWDTAGQEDYNR-----LRP-LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (198)
Q Consensus 51 -~~~~~l~i~D~~G~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 123 (198)
...+.+.|+||||...... +.. .....+|.+++|+|+......... ...+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 0125677999999543221 100 112357899999999875443322 2333332 34556889999996
Q ss_pred cccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160 (198)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (198)
... ..+.......+. |+..++.
T Consensus 253 ~~g--------------G~~ls~~~~~g~-PI~fig~ 274 (443)
T 3dm5_A 253 AKG--------------GGALSAVAATGA-PIKFIGT 274 (443)
T ss_dssp SSH--------------HHHHHHHHTTCC-CEEEEEC
T ss_pred ccc--------------cHHHHHHHHHCC-CEEEEEc
Confidence 532 234455556676 4544554
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=1.6e-07 Score=70.63 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=64.8
Q ss_pred CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccc--cHHHH
Q 029144 66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI--TTAQG 143 (198)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~ 143 (198)
+-..+.+..+.++|.+++|+|+.+|..-.....+++...... ++|.++|+||+|+.++.. . ..+..
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~ 142 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAY 142 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHH
Confidence 334455567889999999999998765544446666655555 899999999999976421 0 02233
Q ss_pred HHHHHHcCCCEEEEeccCCCCCHHHHHH
Q 029144 144 EELRKLIGAPVYIECSSKTQQNVKAVFD 171 (198)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (198)
.......+. +++.+||.++.|+++++.
T Consensus 143 ~~~y~~~g~-~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 143 AEDYRNIGY-DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHHHHTC-CEEECCHHHHTTCTTTGG
T ss_pred HHHHHhCCC-eEEEEecCCCCCHHHHHh
Confidence 444445576 688899999888776654
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=1.7e-07 Score=73.80 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=39.0
Q ss_pred EEEEEEeCCCccCccc-cc-----ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCccc
Q 029144 54 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLDLRD 124 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~Dl~~ 124 (198)
+.+.|+||||...... +. ...+..+|.+++|+|+..+.. . ......+. +.. | ..+|+||+|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 5677999999654211 00 112236899999999876542 2 12222222 235 6 789999999854
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=1.2e-07 Score=69.85 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=61.2
Q ss_pred CCCccCc-ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc
Q 029144 61 TAGQEDY-NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT 139 (198)
Q Consensus 61 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 139 (198)
.|||... .......+.++|+++.|+|+.++.+.... . +. .. ++|.++|+||+|+.+.. .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence 4776432 22344567899999999999988766432 1 11 12 78999999999997532 1
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144 140 TAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176 (198)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (198)
.+....+....+. ++ .+||.++.|+++++..+.+.
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 1233344445566 46 89999999999998776543
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.38 E-value=4.2e-07 Score=74.05 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=39.5
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-----CCeEEEEEEEeCCCccC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----DGSTVNLGLWDTAGQED 66 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~~l~i~D~~G~~~ 66 (198)
.+..+|+|+|.+|+|||||+|++.+....-...+++.........+ ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3568999999999999999999998753212333332222111111 11124567999999754
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.07 E-value=6.3e-06 Score=64.80 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=52.1
Q ss_pred EEEEEEeCCCccC--ccc-----ccc-cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144 54 VNLGLWDTAGQED--YNR-----LRP-LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (198)
Q Consensus 54 ~~l~i~D~~G~~~--~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 125 (198)
+.+.++||||... ... +.. ......+.+++|+|+......... ...+... -.+..+|+||.|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence 5667999999644 111 000 011246899999999875443322 2333333 2467889999999643
Q ss_pred cccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (198)
. ..+.......+. |+..++. |+++
T Consensus 254 ~--------------G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 G--------------GGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp H--------------HHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred c--------------hHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 2 234455556676 6655654 5443
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.07 E-value=1.8e-05 Score=60.73 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=57.4
Q ss_pred ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144 74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP 153 (198)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (198)
...++|.+++|.+. +|..-.....+++...... ++|.++|+||+|+.++.. ....+.........|.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~---------~~~~~~~~~~y~~~G~- 193 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG---------MDFVNEQMDIYRNIGY- 193 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH---------HHHHHHHHHHHHTTTC-
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh---------HHHHHHHHHHHHhCCC-
Confidence 36789999988665 5654433446666555555 789999999999976421 0001122333345677
Q ss_pred EEEEeccCCCCCHHHHHHHH
Q 029144 154 VYIECSSKTQQNVKAVFDAA 173 (198)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i 173 (198)
+++.+||.++.|++++...+
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CEEECBTTTTBTHHHHHHHH
T ss_pred cEEEEecCCCcCHHHHHHhc
Confidence 58889999999999887643
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.00 E-value=5.1e-06 Score=68.32 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.|+|+|+.|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999988754
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.92 E-value=2.2e-07 Score=74.16 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=62.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc---eeEEEEECCeEEEEEEEeCCCccC--ccccc--------
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN---FSANVVVDGSTVNLGLWDTAGQED--YNRLR-------- 71 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~-------- 71 (198)
..+.|+++|.+|+||||+.+++....... ..++.... +... ..+......+||..|++. +...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~--~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRD--MVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHH--HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhh--hccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999887542100 11111100 0000 001112235889888733 23332
Q ss_pred ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144 72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (198)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (198)
..++...++.++|+|.++. +.+.. ..|...+... +.+++++-..++
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEEEECC
Confidence 4455567788999999987 34443 6776666665 445555443333
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.89 E-value=9.8e-06 Score=60.76 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=52.7
Q ss_pred EEEEEEeCCCccC--ccc-ccc-----cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144 54 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (198)
Q Consensus 54 ~~l~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 124 (198)
+.+.++||||... ... +.. .....+|.+++|+|+....... .....+.. ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 5677999999765 211 110 1234689999999987542221 11223332 356 678899999853
Q ss_pred ccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHH
Q 029144 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKA 168 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (198)
. ...+.......+. |+..++ .|+++++
T Consensus 254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 2 1234556667777 455454 4555543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.70 E-value=8.3e-05 Score=58.70 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+..-|.|+|.+++|||||+|++++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 456789999999999999999985
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.47 E-value=7.8e-05 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999877653
No 236
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.42 E-value=9.4e-05 Score=52.33 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|...+...|.++|+.|+|||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6556677899999999999999987765
No 237
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.40 E-value=0.00011 Score=51.59 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=23.2
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
|+-.....|+++|++||||||+++.+....
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 555566789999999999999999887654
No 238
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.38 E-value=0.00014 Score=50.42 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|+......|++.|.+||||||+.+.+..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 7777777899999999999999988764
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=0.00011 Score=50.81 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|++|+|||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988763
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.37 E-value=0.00013 Score=50.55 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
|+..+...|+++|.+|+||||+.+.+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55666778999999999999999877653
No 241
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=0.00013 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=20.7
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+....-.|+++|++|+||||+++.+..
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334456799999999999999988764
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.35 E-value=0.00049 Score=54.23 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=37.4
Q ss_pred EEEEEEeCCCccCccc-ccc-----cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144 54 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (198)
Q Consensus 54 ~~l~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 124 (198)
+.+.|+||||...... ... ..+..++.+++|+|+......... ...+.. ..+ .-+|+||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH---HSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc---cCCCeEEEEecCCCCc
Confidence 5677999999644321 111 113468899999998755332222 223332 244 246889999854
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.32 E-value=0.00018 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+.--|+++|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4446899999999999999998854
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988875
No 245
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.28 E-value=0.00016 Score=51.10 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|+..+...|++.|.+||||||+.+.+..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5555677899999999999999988764
No 246
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.23 E-value=0.0003 Score=48.14 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
....|+++|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999987754
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.23 E-value=0.00023 Score=49.44 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.|+++|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999988765
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.21 E-value=0.00013 Score=54.75 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||||+|.+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999764
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.20 E-value=0.00021 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999988753
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.20 E-value=0.00017 Score=49.39 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029144 8 KCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~ 27 (198)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999644
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.19 E-value=0.00023 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
|+|+|++|+|||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.19 E-value=0.00023 Score=49.99 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999988764
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.15 E-value=0.00078 Score=50.54 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029144 8 KCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~ 27 (198)
-++++|++|+|||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.15 E-value=0.00026 Score=50.62 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++|+|++|+|||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999988764
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.12 E-value=0.00029 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988764
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.12 E-value=0.00029 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999988764
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.0003 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
--|+++|++|+||||+++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999998865
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.08 E-value=0.0004 Score=49.05 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
....|+|+|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987764
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.06 E-value=0.00036 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..-|+++|++||||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999988753
No 260
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.00042 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.-.|+++|++|+||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999988764
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00046 Score=47.28 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 262
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00056 Score=47.95 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 3 ~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
..+...|++.|.+||||||+.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988864
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.00039 Score=47.25 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=18.5
Q ss_pred eEEEEECCCCCCHHHHHHHH
Q 029144 7 IKCVTVGDGAVGKTCMLISY 26 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~ 26 (198)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00043 Score=47.21 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..|+++|++|+||||+.+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999887653
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.01 E-value=0.00046 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999998887654
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.00 E-value=0.00044 Score=47.00 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.|++.|++||||||+.+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888643
No 267
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00057 Score=47.90 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...+.|++.|.+|+||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988764
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.99 E-value=0.00045 Score=47.88 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998875
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.99 E-value=0.00045 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988853
No 270
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.97 E-value=0.00048 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988854
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.97 E-value=0.00061 Score=46.98 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988863
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.96 E-value=0.00054 Score=49.67 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~ 27 (198)
...|+++|++|+||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998887
No 273
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.95 E-value=0.0007 Score=49.11 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.++++|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999988864
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.00058 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999987764
No 275
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.94 E-value=0.00048 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999877654
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00071 Score=47.35 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+...|++.|.+||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999888764
No 277
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.00065 Score=48.45 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...|.++|++|+||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999987754
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.90 E-value=0.00052 Score=48.13 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+..-|+++|++|+||||+.+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987754
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.90 E-value=0.00059 Score=46.72 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-|++.|.+|+||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988763
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.00058 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.++++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999987764
No 281
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.90 E-value=0.001 Score=44.17 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999887653
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00081 Score=47.29 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999988865
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.89 E-value=0.00069 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999988764
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.0007 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999988765
No 285
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.88 E-value=0.0007 Score=49.30 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.5
Q ss_pred CCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 2 SASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...+++.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999987754
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.88 E-value=0.00064 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|+++|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.88 E-value=0.00076 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|++.|.+|+||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988864
No 288
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.86 E-value=0.00077 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987754
No 289
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.86 E-value=0.00086 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.7
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+..-|++.|++|+||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 290
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00045 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=16.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.85 E-value=0.00063 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|++|+|||||++.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998754
No 292
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.85 E-value=0.00074 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999877654
No 293
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.85 E-value=0.0007 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999998877653
No 294
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.84 E-value=0.00058 Score=48.95 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999877654
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.84 E-value=0.00089 Score=46.37 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+..|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987754
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.83 E-value=0.00067 Score=46.43 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
+|+++|++|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988754
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.83 E-value=0.00083 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987754
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.83 E-value=0.00078 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45889999999999999988864
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.00081 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|++.|.+|+||||+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987764
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.82 E-value=0.00069 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|+++|.+||||||+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988763
No 301
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.81 E-value=0.00074 Score=47.84 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.81 E-value=0.00074 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887764
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00079 Score=47.21 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+|+++|++|+||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999988876
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.80 E-value=0.00076 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.++++|+.|+||||+++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999988765
No 305
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.80 E-value=0.00074 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887764
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.80 E-value=0.00083 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999987764
No 307
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.79 E-value=0.00074 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999998777643
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.79 E-value=0.00084 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887764
No 309
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.78 E-value=0.00088 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|+++|++|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 310
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.78 E-value=0.00094 Score=47.03 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 311
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.78 E-value=0.001 Score=47.15 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.+.|+|.|.+||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988865
No 312
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.77 E-value=0.00073 Score=48.13 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987753
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.76 E-value=0.00086 Score=48.44 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q 029144 8 KCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~ 27 (198)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998776
No 314
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.75 E-value=0.00082 Score=49.21 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999998877643
No 315
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.75 E-value=0.00086 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999887764
No 316
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.75 E-value=0.00095 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999887764
No 317
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.75 E-value=0.00081 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999998887643
No 318
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.74 E-value=0.00094 Score=48.60 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887765
No 319
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.74 E-value=0.00087 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999887764
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.74 E-value=0.00074 Score=47.82 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.73 E-value=0.0012 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+..-|.++|+.|+|||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999987765
No 322
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.72 E-value=0.0011 Score=44.92 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988865
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.72 E-value=0.0009 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999887764
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.72 E-value=0.00096 Score=48.62 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988774
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.71 E-value=0.0014 Score=49.39 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.3
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
....-|+|+|++|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999987765
No 326
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.71 E-value=0.001 Score=47.23 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.+.|+++|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987754
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.71 E-value=0.00096 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999887764
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.71 E-value=0.0012 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.|.++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988865
No 329
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.71 E-value=0.00096 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887764
No 330
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.69 E-value=0.00064 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=15.1
Q ss_pred eEEEEECCCCCCHHHHHHHHh-hC
Q 029144 7 IKCVTVGDGAVGKTCMLISYT-SN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~-~~ 29 (198)
--++++|+.|+||||+++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999888 53
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.69 E-value=0.0014 Score=46.10 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
....|+++|++|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999888764
No 332
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.69 E-value=0.0011 Score=48.90 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988774
No 333
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.69 E-value=0.0012 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999877654
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.69 E-value=0.0013 Score=45.94 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++..|+|.|.+||||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999888764
No 335
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.68 E-value=0.0011 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999887764
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.68 E-value=0.0012 Score=45.85 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988764
No 337
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.68 E-value=0.0012 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998654
No 338
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.68 E-value=0.0016 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~ 27 (198)
.+...|.|+|++|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999997664
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.67 E-value=0.00098 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|++|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 340
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.67 E-value=0.001 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
....|+++|++|+||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988764
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.66 E-value=0.001 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999998877653
No 342
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0016 Score=45.66 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.0
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+..-|.++|++|+||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999987764
No 343
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0013 Score=46.96 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988754
No 344
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.65 E-value=0.0012 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999998877643
No 345
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.64 E-value=0.0011 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999998877643
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.62 E-value=0.0018 Score=49.01 Aligned_cols=25 Identities=20% Similarity=0.030 Sum_probs=21.1
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+++-|.++|++||||||+++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999977653
No 347
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=48.73 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999988763
No 348
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.62 E-value=0.0016 Score=46.83 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|+++|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987764
No 349
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.61 E-value=0.0012 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999887754
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.0016 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.00061 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++|+|++|+|||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999887754
No 352
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.58 E-value=0.0021 Score=44.38 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999987754
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.58 E-value=0.0017 Score=47.27 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q 029144 7 IKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~ 27 (198)
..|.|+|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998876
No 354
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.58 E-value=0.001 Score=44.46 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999888764
No 355
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.57 E-value=0.0014 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.57 E-value=0.0012 Score=50.90 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999888764
No 357
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.57 E-value=0.0016 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...+.++|.+|+|||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999988875
No 358
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.55 E-value=0.002 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999998877653
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.54 E-value=0.0017 Score=44.85 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 360
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.51 E-value=0.0015 Score=45.46 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...|++.|.+|+||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.50 E-value=0.0016 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.++|+|+.|+||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988865
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.50 E-value=0.0017 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-|+|+|++|+|||||.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988864
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.50 E-value=0.0016 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~ 27 (198)
.-.|+++|+.|+||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578999999999999998776
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0021 Score=44.64 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988765
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.46 E-value=0.0019 Score=46.00 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q 029144 9 CVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~ 28 (198)
|+++|+|||||+|....+..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999987764
No 366
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.46 E-value=0.0015 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999877653
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.45 E-value=0.0019 Score=43.86 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987764
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.43 E-value=0.0019 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.|+++|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988764
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.43 E-value=0.0023 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.6
Q ss_pred CceeEEEEECCCCCCHHHHHHHHhh
Q 029144 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 4 ~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+++.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988763
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.42 E-value=0.0012 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999877654
No 371
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0031 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.--++++|+.|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44789999999999999977753
No 372
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.0017 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999998877653
No 373
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.40 E-value=0.0022 Score=46.16 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+++.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987763
No 374
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.39 E-value=0.0021 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999988764
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.39 E-value=0.00072 Score=47.71 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999988764
No 376
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.39 E-value=0.002 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999998877643
No 377
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.39 E-value=0.0019 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999887654
No 378
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.38 E-value=0.002 Score=49.79 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.++++|+.|+||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988875
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.38 E-value=0.0025 Score=43.16 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999987754
No 380
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.37 E-value=0.0031 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+.--++++|+.|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999987763
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.37 E-value=0.0026 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+..-|.|+|+.|+|||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999987765
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.36 E-value=0.0023 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988874
No 383
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.36 E-value=0.0022 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999887764
No 384
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.35 E-value=0.0025 Score=45.47 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999887653
No 385
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.35 E-value=0.0022 Score=49.25 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-+.++|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999998777643
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.35 E-value=0.0022 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999888754
No 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.0023 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999998877643
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.35 E-value=0.0023 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999998887643
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.33 E-value=0.0019 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999887653
No 390
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0027 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+-.+++.|++|+||||+++.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999888753
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.32 E-value=0.002 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999888653
No 392
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.32 E-value=0.0023 Score=43.92 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999988764
No 393
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.30 E-value=0.0024 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999998877643
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.30 E-value=0.0025 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|+.|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999887764
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.29 E-value=0.0035 Score=42.90 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...|+++|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987765
No 396
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.27 E-value=0.0031 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999887754
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.27 E-value=0.0025 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++|+|+.|+||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999988764
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.26 E-value=0.0041 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+..-|++.|.+|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999887653
No 399
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.22 E-value=0.0017 Score=48.39 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|+.. .+-|.|.|++||||||+.+.|..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 6654 45699999999999999977653
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0044 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.--|+++|+.|+||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45789999999999999977753
No 401
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.21 E-value=0.0032 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+..-|++.|+.|+||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999877654
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.18 E-value=0.0044 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|+++|.+|+||||+.+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999987754
No 403
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.16 E-value=0.0034 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998876
No 404
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.14 E-value=0.0021 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|+.|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999887764
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.13 E-value=0.0029 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.||||||+++.+.+-.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999887654
No 406
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.13 E-value=0.0036 Score=44.86 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988874
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.12 E-value=0.0048 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.--|+|+|+.|+|||||++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44689999999999999977753
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.11 E-value=0.0031 Score=46.92 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999877654
No 409
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.10 E-value=0.0037 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-+++.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0032 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
-.|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987754
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.10 E-value=0.0044 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.09 E-value=0.0043 Score=41.39 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029144 9 CVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~ 27 (198)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999998765
No 413
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.08 E-value=0.0039 Score=43.71 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999887653
No 414
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.08 E-value=0.0032 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999877753
No 415
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.07 E-value=0.0033 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
-.+++.|+||+||||++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999877765
No 416
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.06 E-value=0.0043 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999988754
No 417
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.05 E-value=0.0041 Score=46.33 Aligned_cols=25 Identities=12% Similarity=-0.104 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+.-+++.|++|+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999888754
No 418
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0032 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999887754
No 419
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.02 E-value=0.0044 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 420
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.02 E-value=0.0045 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.01 E-value=0.0057 Score=46.18 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|+... ..|+|+|++|+|||||...+..
T Consensus 1 ~~~m~-~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLP-PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence 44432 4699999999999999988764
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.00 E-value=0.0052 Score=46.75 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999987764
No 423
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.99 E-value=0.0043 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999998888764
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.98 E-value=0.0031 Score=47.62 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
--++|+|..|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999998653
No 425
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.95 E-value=0.0021 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999998877643
No 426
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.95 E-value=0.0056 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999975543
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.93 E-value=0.0059 Score=42.59 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+.|.+.|..||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999887653
No 428
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.92 E-value=0.0048 Score=46.13 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999988764
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.88 E-value=0.0051 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.028 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999988875
No 430
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.87 E-value=0.0051 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999887753
No 431
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.86 E-value=0.007 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
...-|+++|.+|+||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998753
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.84 E-value=0.0078 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.|.+.|++|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987754
No 433
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.83 E-value=0.0079 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..-.+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999888764
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.81 E-value=0.0073 Score=43.37 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
+...|.++|.+|+||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987764
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.80 E-value=0.0083 Score=42.86 Aligned_cols=28 Identities=14% Similarity=-0.018 Sum_probs=21.1
Q ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKttli~~~~~ 28 (198)
|...+..-|++.|..|+||||+++.+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345667899999999999999977653
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.77 E-value=0.0055 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999987764
No 437
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.0057 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.72 E-value=0.0063 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999998887754
No 439
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.71 E-value=0.007 Score=42.40 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
..|+++|++|+|||||...+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999887653
No 440
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.70 E-value=0.0069 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999887653
No 441
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.0064 Score=43.65 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877654
No 442
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.68 E-value=0.011 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred ceeEEEEECCCCCCHHHHHHHHh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~ 27 (198)
...+|+++|++|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999996554
No 443
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.67 E-value=0.01 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999887643
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.67 E-value=0.0069 Score=46.64 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029144 9 CVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~ 27 (198)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999998876
No 445
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.67 E-value=0.0069 Score=48.30 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
-++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999987764
No 446
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.65 E-value=0.0078 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+++.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888764
No 447
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.0081 Score=45.38 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999988764
No 448
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.61 E-value=0.0069 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~ 27 (198)
.-.|+++|+.|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999997664
No 449
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.61 E-value=0.0081 Score=45.29 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.|++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999988754
No 450
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.58 E-value=0.0088 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999877653
No 451
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.58 E-value=0.0037 Score=41.26 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999766543
No 452
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.58 E-value=0.0063 Score=46.31 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999987766
No 453
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.58 E-value=0.029 Score=44.33 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.0
Q ss_pred ceeEEEEECCCCCCHHHHHHHHh
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~ 27 (198)
+..-|.|+|..++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34567799999999999999654
No 454
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.57 E-value=0.0097 Score=42.68 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.+++.++|++||||||+...+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 57899999999999999987754
No 455
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.57 E-value=0.013 Score=43.97 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=18.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~ 27 (198)
.--|+++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4468999999999999997665
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.56 E-value=0.006 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+...|++.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999877643
No 457
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.54 E-value=0.0072 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999887664
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0084 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988763
No 459
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.0083 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999887754
No 460
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.52 E-value=0.0086 Score=41.26 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q 029144 9 CVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~~~ 29 (198)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998854
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.01 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..-|++-|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999887653
No 462
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.48 E-value=0.0091 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.012 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999998887643
No 464
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.45 E-value=0.011 Score=40.37 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.-|++.|++|+||||+...+....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999888753
No 465
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0094 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+-.|++.|+||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999988764
No 466
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.44 E-value=0.025 Score=42.50 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=25.4
Q ss_pred cEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144 79 DVFLLAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (198)
Q Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 122 (198)
..-++++|--+.-+ -... ..++..+.....+.++|+..|..+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~-~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQ-RHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHH-HHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHH-HHHHHHHHhCCCCcEEEEEeCCccc
Confidence 56677777555433 2222 4555555554456788887777654
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.44 E-value=0.012 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999887764
No 468
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.013 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999988764
No 469
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.42 E-value=0.011 Score=41.59 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHh
Q 029144 9 CVTVGDGAVGKTCMLISYT 27 (198)
Q Consensus 9 i~vvG~~~~GKttli~~~~ 27 (198)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999997764
No 470
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.41 E-value=0.0092 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999987754
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.41 E-value=0.0087 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999888653
No 472
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.01 Score=46.78 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+-.|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999988764
No 473
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.39 E-value=0.0094 Score=42.11 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
++.|.+.|.+|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987754
No 474
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.39 E-value=0.01 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
++++.|++|+||||+++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999877653
No 475
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.37 E-value=0.0044 Score=45.30 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999888753
No 476
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.35 E-value=0.01 Score=45.47 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 5 ~~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
..-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999887753
No 477
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.33 E-value=0.0077 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999887764
No 478
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.33 E-value=0.01 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999888754
No 479
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.31 E-value=0.0097 Score=45.03 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-++|.|++|+|||||++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999888753
No 480
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.30 E-value=0.011 Score=45.29 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999888764
No 481
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.30 E-value=0.016 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhh
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~ 28 (198)
..-|+|+|++|+|||||...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34578999999999999988864
No 482
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.29 E-value=0.0085 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999877654
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.28 E-value=0.015 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999887643
No 484
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.28 E-value=0.011 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999988654
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.27 E-value=0.012 Score=42.88 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~~ 30 (198)
...|++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999887654
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.27 E-value=0.013 Score=43.97 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999777653
No 487
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.012 Score=45.74 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
+-.|++.|+||+|||.|++++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 447999999999999999988764
No 488
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.22 E-value=0.013 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988754
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.011 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887653
No 490
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.21 E-value=0.013 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999888753
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.17 E-value=0.014 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
-|+|+|++|+|||||...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5889999999999999888753
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.15 E-value=0.014 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSNT 30 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~~ 30 (198)
.++++|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 493
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.15 E-value=0.013 Score=44.99 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-.+++.|++|+|||++++.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999888753
No 494
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.15 E-value=0.0074 Score=49.36 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999765543
No 495
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.14 E-value=0.014 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
.-|+|+|+.|+|||||...+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999888753
No 496
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.13 E-value=0.013 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q 029144 7 IKCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~ 28 (198)
-.+++.|++|+|||||++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987765
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.13 E-value=0.014 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Q 029144 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 6 ~~~i~vvG~~~~GKttli~~~~~~ 29 (198)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999888753
No 498
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.11 E-value=0.014 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q 029144 7 IKCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 7 ~~i~vvG~~~~GKttli~~~~~~ 29 (198)
-.|+++|++|+|||+|++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999988763
No 499
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.09 E-value=0.013 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q 029144 8 KCVTVGDGAVGKTCMLISYTSN 29 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~~ 29 (198)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999988764
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.09 E-value=0.014 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q 029144 8 KCVTVGDGAVGKTCMLISYTS 28 (198)
Q Consensus 8 ~i~vvG~~~~GKttli~~~~~ 28 (198)
.++++|++|+|||||++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987764
Done!