BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029146
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 100 bits (249), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
Q R + + +R V F+ +H L LW+ TYP +L +S+QWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421
Query: 100 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 152
DFR G L+NL++FA+ ++ F++++ Q R + EYP A AG+ +TF L
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFEL 473
>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum
GN=elmoB PE=4 SV=1
Length = 284
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 45 RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 104
+ ++ + K+ +D + +H+ +L LW A PD +S +W +G+QG DP+TDFRG
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167
Query: 105 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLD 157
G + L+NL++F+ S + +L+ K YPFA+ G+NIT +++ ++D
Sbjct: 168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLID 217
>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum
GN=elmoC PE=4 SV=1
Length = 618
Score = 90.1 bits (222), Expect = 9e-18, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 36 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 95
+T +Q++ ++ L + ++++ PDH+E L+ LW+ YP+QE S WK+ G+Q
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415
Query: 96 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQM 155
DP+ DFRG G + L NL+ + + Q +L + D +YPFAVAG+NI+ ++ ++
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469
Query: 156 LDL 158
+
Sbjct: 470 FQI 472
>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1
SV=1
Length = 293
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 55 FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 114
+D+ H+E L LW P ++L+ IS QW E+G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 115 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATK 162
F++ +++ ++L + + Y +A+ G+N+T M +L EA K
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225
>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2
SV=1
Length = 293
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 21 VCFKRKGTYERICINLTPQQAERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPD 76
+C ++ +++ IC+ Q ++L H + K +D++ H++ L LW+ P
Sbjct: 83 ICSEKDTSFQ-ICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPT 141
Query: 77 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 136
++L IS QW ++G+QG DP TDFRG G + L NL++F++ +++ ++L + +
Sbjct: 142 KKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG 201
Query: 137 WEYPFAVAGVNITFMLMQMLDLEATK 162
Y +A+ G+N+T M +L EA K
Sbjct: 202 --YSYAIVGINLTEMAYSLLKSEALK 225
>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2
SV=1
Length = 326
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 21/131 (16%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLLRK------QGGKRADWE---------YPFAVAG 145
FRG G + L NL +FA+ +T+ Q++L +A+WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 146 VNITFMLMQML 156
+NIT + +L
Sbjct: 233 INITDLAYNLL 243
>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1
Length = 326
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 21/131 (16%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLLRK------QGGKRADWE---------YPFAVAG 145
FRG G + L NL +FA+ + + Q++L +A+WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 146 VNITFMLMQML 156
+NIT + +L
Sbjct: 233 INITDLAYNLL 243
>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1
Length = 293
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 55 FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 114
+D+ H++ L LW P ++L IS QW ++G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 115 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATK 162
F++ +++ ++L + + Y +A+ G+N+T M +L EA K
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225
>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2
SV=3
Length = 334
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 29/139 (20%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRR------EAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RADWE-------- 138
FRG G + L NL +FA+ +T+ Q++L +++ K +A+WE
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAI 232
Query: 139 -YPFAVAGVNITFMLMQML 156
Y FA+ G+NIT + +L
Sbjct: 233 GYSFAIVGINITDLAYNLL 251
>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2
SV=2
Length = 326
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L +S QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLLRKQGG------KRADWE---------YPFAVAG 145
FRG G + L NL +FA+ +T Q++L + +WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVG 232
Query: 146 VNITFMLMQML 156
+NIT + +L
Sbjct: 233 INITDLAYNLL 243
>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D
OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1
Length = 1267
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
Q +++ L K ++ P HQ L LW+ +P+Q + W+ +G+Q KDPS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344
Query: 100 DFRGAGFISLENLLFFAKTFSTSFQR-LLRKQGGKRADWEYPFAVAGVNITFMLMQ 154
DFRG G L++L++ A+ F L+ +Q A++ YP+A +G+ +T L++
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQ--PEANY-YPYATSGIQVTSFLVE 397
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQEL--HGLISD--------QWK 88
QA L L+ RM+ D + +E L+AL A + PD E GL +D +++
Sbjct: 286 QALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 147 NITFMLMQML 156
+T +L ++L
Sbjct: 406 QLTVLLCELL 415
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2
SV=1
Length = 652
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQELHG----------LISDQWK 88
QA L L+ RM+ D + +E L+AL A + P+ E G L + +++
Sbjct: 286 QALMLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLCAREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 147 NITFMLMQML 156
+T +L +L
Sbjct: 406 QLTVLLCDLL 415
>sp|Q91YP6|ELMD3_MOUSE ELMO domain-containing protein 3 OS=Mus musculus GN=Elmod3 PE=2
SV=1
Length = 381
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 108
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RGAGF +
Sbjct: 164 LDSQNPTHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 109 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
L L+ +KTF + Q + R ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTFLMA-QEIFRL--SHHHIQQFPFCLMSVNITRIAIQALREE 268
>sp|Q54WH5|ELMOE_DICDI ELMO domain-containing protein E OS=Dictyostelium discoideum
GN=elmoE PE=4 SV=1
Length = 1677
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 62 HQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFST 121
HQ L LW + G+ S+ W +G++ +P DF+ G ++L NL +F+K
Sbjct: 493 HQILLSDLWGSALSSYPFGGINSEHWLLLGFRSSNPMEDFKNTGVLALRNLSYFSKQHLQ 552
Query: 122 SFQRLLRKQ 130
FQ LL Q
Sbjct: 553 PFQSLLLTQ 561
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQEL--HGLISD--------QWK 88
QA L L+ RM+ D + ++ L+AL A + P+ E GL +D +++
Sbjct: 286 QALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSLCVREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 147 NITFMLMQML 156
+T +L ++L
Sbjct: 406 QLTALLCELL 415
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYP---DQELHGLISD--------QWK 88
QA L L+ RM+ D + +E L+ L A + + GL +D +++
Sbjct: 286 QALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSLCAREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFARGSI 405
Query: 147 NITFMLMQML 156
+T +L ++L
Sbjct: 406 QLTVLLCELL 415
>sp|Q5XIQ2|ELMD3_RAT ELMO domain-containing protein 3 OS=Rattus norvegicus GN=Elmod3
PE=2 SV=1
Length = 356
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLEN 111
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RG GF++L +
Sbjct: 164 LDSQNPTHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGANPATDLRGTGFLALLH 220
Query: 112 LLFFAKTFSTSF--QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
LL+ T Q +LR ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTLLMAQEILRL--SHHHIQQFPFCLMSVNITRIAIQALREE 268
>sp|Q58DT5|ELMD3_BOVIN ELMO domain-containing protein 3 OS=Bos taurus GN=ELMOD3 PE=2 SV=1
Length = 381
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLEN 111
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RGAGF++L +
Sbjct: 164 LDSQDPMHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGTNPATDLRGAGFLALLH 220
Query: 112 LLFFAKTFSTSF--QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
LL+ T + +LR + ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTLLMAREILRL--SRHHIQQFPFCLMSVNITRIAIQALREE 268
>sp|Q96FG2|ELMD3_HUMAN ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=2
SV=2
Length = 381
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 108
D+ P H L+ ++ + D LHG + W+++G+QG +P+TD RGAGF +
Sbjct: 164 LDSQDPVHGRVLQTIYKKLTGSKFDCALHG---NHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 109 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
L L+ +KT + Q + R + ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTLPMA-QEIFRL--SRHHIQQFPFCLMSVNITHIAIQALREE 268
>sp|Q09292|ELMD3_CAEEL ELMO domain-containing protein C56G7.3 OS=Caenorhabditis elegans
GN=C56G7.3 PE=4 SV=2
Length = 322
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFA 142
+ W +G+Q P TDFRG G + L + F + + R + + ++P A
Sbjct: 172 VGAHWVTVGFQSATPHTDFRGCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPN-DFPLA 230
Query: 143 VAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHCCIY 192
V +NIT +L+ L A F + +LH M + C IY
Sbjct: 231 VVSINITSILLTQLKKGALD--NFGNEIEGLYPFFSALHASAMCRFCSIY 278
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 30 ERICINLTPQ-QAERLRRLKHRMKVYFDA-SRPDHQEALRALWAATYPDQELHGLISDQW 87
+R+ + PQ QA+R + R ++ FDA S P++ + Y + +
Sbjct: 307 DRMMTKMDPQDQAQRDIIFELR-RIAFDAESEPNNSSGSMEKRKSMY---------TRDY 356
Query: 88 KEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVA 144
K++G+ +P+ DF G ++L+N+L+FAK ++ R++ + + E PF +
Sbjct: 357 KKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRS 416
Query: 145 GVNITFMLMQML 156
+ +T ML ++L
Sbjct: 417 SIELTKMLCEIL 428
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 30 ERICINLTPQ-QAERLRRLKHRMKVYFDA-SRPDHQEALRALWAATYPDQELHGLISDQW 87
+R+ + PQ QA+R + R ++ FDA S P++ + Y + +
Sbjct: 307 DRMMTKMDPQDQAQRDIIFELR-RIAFDAESEPNNSSGSMEKRKSMY---------TRDY 356
Query: 88 KEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVA 144
K++G+ +P+ DF G ++L+N+L+FAK ++ R++ + + E PF +
Sbjct: 357 KKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRS 416
Query: 145 GVNITFMLMQML 156
+ +T ML ++L
Sbjct: 417 SIELTKMLCEIL 428
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 138 EYPFAVAGVNITFMLMQMLDL 158
E PF + + +T ML ++L +
Sbjct: 403 ECPFGRSAIELTKMLCEILQV 423
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 138 EYPFAVAGVNITFMLMQMLDL 158
E PF + + +T ML ++L +
Sbjct: 403 ECPFGRSAIELTKMLCEILQV 423
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 138 EYPFAVAGVNITFMLMQMLDL 158
E PF + + +T ML ++L +
Sbjct: 403 ECPFGRSAIELTKMLCEILQV 423
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 355 AMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 414
Query: 138 EYPFAVAGVNITFMLMQMLDL 158
E PF + + +T ML ++L +
Sbjct: 415 ECPFGRSAIELTKMLCEILQV 435
>sp|Q48CJ2|MSRA_PSE14 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3
SV=1
Length = 215
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V ++ + ++ L+ W A P Q +
Sbjct: 83 FTPNPTYEEVCSGLTAHTEVVL--------VVYEPEKISYKSLLKVFWEAHNPTQGMR-- 132
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R + + L AK + FQ LRK G
Sbjct: 133 ----------QGNDIGTQYRSVIYCTTPKQLDAAKASAAEFQAELRKAG 171
>sp|Q8TYZ5|TMCA_METKA Putative tRNA(Met) cytidine acetyltransferase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0146 PE=3 SV=1
Length = 855
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 12 TWIGKGLTCVCFKRKGTYERICINLTPQQAERLRR--------LKHRMKVYFDASRPDHQ 63
T GK +T + R+GT R I ++RR + M + DA
Sbjct: 530 TETGKIVTALQVAREGTIPRDVIT-------KMRRGYRPPGNVIPDLMVQHHDALDFPRM 582
Query: 64 EALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFF 115
+ LR + AT+PD HGL S KE+ K D+ G GF + E L F
Sbjct: 583 KGLRIVRIATHPDIMRHGLGSRALKELAKIAKKKDYDWIGTGFGANEELTRF 634
>sp|A8L177|MSRA_FRASN Peptide methionine sulfoxide reductase MsrA OS=Frankia sp. (strain
EAN1pec) GN=msrA PE=3 SV=1
Length = 221
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 28 TYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQW 87
TYE C LT L V FD ++ E LR W A P Q +
Sbjct: 85 TYEEACSGLTGHTEAVL--------VVFDPAKVSFAELLRVFWEAHDPTQGMR------- 129
Query: 88 KEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + E+ A +FQR+L G
Sbjct: 130 -----QGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAG 168
>sp|Q4ZM24|MSRA_PSEU2 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=msrA PE=3 SV=1
Length = 215
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V ++ ++ ++E L+ W P Q +
Sbjct: 83 FTPNPTYEEVCSGLTGHTEVVL--------VVYEPAKISYEELLKVFWEVHNPTQGMR-- 132
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R + + L AK + +FQ L K G
Sbjct: 133 ----------QGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAG 171
>sp|Q1I3L0|MSRA_PSEE4 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas
entomophila (strain L48) GN=msrA PE=3 SV=1
Length = 222
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD ++ + + L W P Q +
Sbjct: 85 FTPNPTYEEVCSGLTGHTEVVL--------VVFDKNKVSYHDLLTMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L AKT +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPQQLEEAKTSRDAFQAELSKAG 173
>sp|B1JE82|MSRA_PSEPW Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain W619) GN=msrA PE=3 SV=1
Length = 222
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPNPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L AK +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPQQLEEAKASRDAFQAELNKAG 173
>sp|C3LRL2|MSRA_VIBCM Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=msrA PE=3 SV=1
Length = 212
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 130
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|Q9KP30|MSRA_VIBCH Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=msrA PE=3 SV=1
Length = 212
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 130
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|A5F587|MSRA_VIBC3 Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=msrA PE=3 SV=1
Length = 212
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 130
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|Q88QZ8|MSRA_PSEPK Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain KT2440) GN=msrA PE=3 SV=1
Length = 222
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPHPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L AK +FQ L K G
Sbjct: 135 ----------QGNDIGTQYRSAIYCTSPEQLEQAKASRDAFQAELSKAG 173
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 72 ATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKT-----FSTSFQRL 126
++Y D +++++W G +G PST + FI NL T F+ +
Sbjct: 279 SSYNDLYEFNILNNEWILRGCKGNVPSTRYGHISFIHGNNLFILGGTNAEISFNDMYSCD 338
Query: 127 LRKQGGKRADWEYPFAVAGVNITFMLMQMLD 157
L+ D+ Y F ++ V +L++ +D
Sbjct: 339 LKNNEWSEVDFSYSFNISKVFCRSVLVESID 369
>sp|B0KJ25|MSRA_PSEPG Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain GB-1) GN=msrA PE=3 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPHPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L A+ +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPEQLEQAEASRDAFQAELSKAG 173
>sp|B7K079|MSRA_CYAP8 Peptide methionine sulfoxide reductase MsrA OS=Cyanothece sp.
(strain PCC 8801) GN=msrA PE=3 SV=1
Length = 217
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 28 TYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQW 87
TY+ +C LT L V FD ++E L+ W + P Q +
Sbjct: 86 TYQEVCTGLTGHNEVVL--------VVFDPKIISYEELLKVFWESHNPTQGMR------- 130
Query: 88 KEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R ++ A+T +Q+ L + G
Sbjct: 131 -----QGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,942,433
Number of Sequences: 539616
Number of extensions: 2844416
Number of successful extensions: 7569
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7524
Number of HSP's gapped (non-prelim): 44
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)