Query 029146
Match_columns 198
No_of_seqs 126 out of 367
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 5.3E-48 1.1E-52 333.9 10.6 185 2-195 64-254 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 3.6E-42 7.9E-47 278.8 12.2 150 43-196 2-152 (170)
3 KOG2999 Regulator of Rac1, req 99.9 9.6E-25 2.1E-29 201.9 9.6 159 32-194 274-446 (713)
4 PF04844 Ovate: Transcriptiona 62.2 12 0.00027 25.4 3.4 54 94-175 1-54 (59)
5 TIGR01568 A_thal_3678 uncharac 50.8 19 0.00041 25.1 2.8 56 93-175 6-61 (66)
6 PF11588 DUF3243: Protein of u 46.1 7.8 0.00017 28.1 0.3 28 49-77 40-67 (81)
7 PF03735 ENT: ENT domain; Int 36.7 61 0.0013 22.9 3.7 31 35-69 25-55 (73)
8 PF08262 Lem_TRP: Leucophaea m 34.3 17 0.00036 16.2 0.3 6 89-94 3-8 (10)
9 KOG2412 Nuclear-export-signal 30.6 3.6E+02 0.0079 26.4 8.8 48 106-157 377-425 (591)
10 KOG4404 Tandem pore domain K+ 30.1 85 0.0018 28.6 4.4 90 34-129 32-143 (350)
11 PF05083 LST1: LST-1 protein; 29.8 22 0.00049 25.1 0.5 9 94-102 58-66 (74)
12 PF11272 DUF3072: Protein of u 24.7 2.3E+02 0.005 19.2 4.8 26 34-59 14-39 (57)
13 PRK10363 cpxP periplasmic repr 20.3 2E+02 0.0044 23.6 4.5 39 33-71 48-86 (166)
14 PF08863 YolD: YolD-like prote 20.0 95 0.0021 21.7 2.3 13 60-72 2-14 (92)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.3e-48 Score=333.86 Aligned_cols=185 Identities=46% Similarity=0.781 Sum_probs=171.2
Q ss_pred CCCccccccccceec-----cccccccccCCCCccccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 029146 2 CADDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 76 (198)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (198)
++++...|+.+|+|+ ++.|.+.+.+..+...+....+.|.+.+..+++++++|||.+|++|+++|++||+.++|+
T Consensus 64 ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~ 143 (302)
T KOG2998|consen 64 ASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPD 143 (302)
T ss_pred cccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCC
Confidence 468889999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCChhhHhhccCCCCCCCCCcccchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHh
Q 029146 77 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQML 156 (198)
Q Consensus 77 ~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfA~asIniT~~L~~~l 156 (198)
++++++++++|++|||||+||+|||||+|+|||+||+||+++||+.+++++.+|. ++.|+||||+||||||.|++++|
T Consensus 144 ~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~--~~r~eYpfAVvgINIT~m~~qmL 221 (302)
T KOG2998|consen 144 KELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSR--HPRWEYPFAVVGINITFMAIQML 221 (302)
T ss_pred CccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcC--CCccCCceEEEeecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999975 45699999999999999999999
Q ss_pred hhhcC-CCCchhhHHHHHHhcCCCcchhhhhHHHHHHHHh
Q 029146 157 DLEAT-KPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQF 195 (198)
Q Consensus 157 ~~~~~-k~~~~~~~~F~~lf~~~~~a~~~~~l~c~~~~~~ 195 (198)
+.++. ++.+..+..| ++.+|| ..|+|+.|+.|
T Consensus 222 ~~eal~~~~~~~~~~~-----~~~~~F--~~lYc~af~~~ 254 (302)
T KOG2998|consen 222 DLEALKKHFNNIVKVF-----ETEPAF--DLLYCYAFLEF 254 (302)
T ss_pred Hhhhcccccccccccc-----ccHHHH--HHHHHHHHHHH
Confidence 99988 4444444444 677887 89999999754
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=3.6e-42 Score=278.76 Aligned_cols=150 Identities=36% Similarity=0.653 Sum_probs=131.8
Q ss_pred HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCChhhHhhccCCCCCCCCCcccchhhhhhhHHHHHhhchHH
Q 029146 43 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122 (198)
Q Consensus 43 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~ 122 (198)
.|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++||||++||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57889999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHH-hcCCCcchhhhhHHHHHHHHhh
Q 029146 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSGRSLHDIVMVKHCCIYCQFY 196 (198)
Q Consensus 123 ~~~il~~q~~~~~~~~yPfA~asIniT~~L~~~l~~~~~k~~~~~~~~F~~l-f~~~~~a~~~~~l~c~~~~~~~ 196 (198)
+++++.++.++.+..+||||+||||||.+|+++|++++. .......+..+ +...+.+| .++||..|.+|.
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~f--~elf~~~f~~f~ 152 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGAL--DSEFYKRINFLSFFSSLEAF--EELFCACFQLFD 152 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhccc--CHHHhhcccccccCccHHHH--HHHHHHHHHHHH
Confidence 999999998777678999999999999999999999544 33333333333 55566666 899999997774
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=99.91 E-value=9.6e-25 Score=201.86 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=146.0
Q ss_pred ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccC-----------CCChhhHhhccCCC-CCCCC
Q 029146 32 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELH-----------GLISDQWKEMGWQG-KDPST 99 (198)
Q Consensus 32 ~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~-----------~~~~~~Wk~lGFQ~-~dP~t 99 (198)
..++|+..|...++.+..|+.++.|+.+++..+.++.+.+.+|.++..+ ....+..|++||.+ .||+.
T Consensus 274 ~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~ 353 (713)
T KOG2999|consen 274 RPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQ 353 (713)
T ss_pred chHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHH
Confidence 3469999999999999999999999999999999999999999875432 34578999999999 99999
Q ss_pred Ccc--cchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHhcC
Q 029146 100 DFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSG 177 (198)
Q Consensus 100 DFR--g~G~LgL~~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfA~asIniT~~L~~~l~~~~~k~~~~~~~~F~~lf~~ 177 (198)
||- ++|+|+|+||+||+++||+.|.+++.++++|.+.++|||+.++|.+|+|||++|++ +.++++..+.|.+||++
T Consensus 354 df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrV--ge~p~E~~~df~pmfFt 431 (713)
T KOG2999|consen 354 DFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRV--GEPPDELDRDFIPMFFT 431 (713)
T ss_pred hcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhc--CCCchhhcCccceeeec
Confidence 996 89999999999999999999999999999999999999999999999999999999 55788999999999999
Q ss_pred CCcchhhhhHHHHHHHH
Q 029146 178 RSLHDIVMVKHCCIYCQ 194 (198)
Q Consensus 178 ~~~a~~~~~l~c~~~~~ 194 (198)
+|..| .|+|||.--|
T Consensus 432 hd~~F--ee~FciciqL 446 (713)
T KOG2999|consen 432 HDTPF--EELFCICVQL 446 (713)
T ss_pred CCCcH--HHHHHHHHHH
Confidence 99999 8999986533
No 4
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=62.23 E-value=12 Score=25.45 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCCCCCCcccchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCchhhHHHHH
Q 029146 94 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQ 173 (198)
Q Consensus 94 ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfA~asIniT~~L~~~l~~~~~k~~~~~~~~F~~ 173 (198)
+.||..|||. +..+|+.+..-+ ..-.+-.+|...|.+++.+-|...-..|..
T Consensus 1 S~DP~~DFr~------------------SM~EMI~~~~i~----------~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~d 52 (59)
T PF04844_consen 1 SSDPYEDFRE------------------SMVEMIEENGIR----------DWDDLEELLACYLSLNSPEHHKFIVEAFVD 52 (59)
T ss_pred CCCHHHHHHH------------------HHHHHHHHcCCC----------CHHHHHHHHHHHHHhCChhhhhHHHHHHHH
Confidence 4689999885 455666664211 334566777777888776666555555555
Q ss_pred Hh
Q 029146 174 ML 175 (198)
Q Consensus 174 lf 175 (198)
++
T Consensus 53 v~ 54 (59)
T PF04844_consen 53 VW 54 (59)
T ss_pred HH
Confidence 54
No 5
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=50.75 E-value=19 Score=25.14 Aligned_cols=56 Identities=30% Similarity=0.619 Sum_probs=33.8
Q ss_pred CCCCCCCCcccchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCchhhHHHH
Q 029146 93 QGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFL 172 (198)
Q Consensus 93 Q~~dP~tDFRg~G~LgL~~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfA~asIniT~~L~~~l~~~~~k~~~~~~~~F~ 172 (198)
.+.||..|||. +..+|+.+.... ..| -.+-.+|.-.|.+++..-|...-..|.
T Consensus 6 ~S~DPy~DFr~------------------SM~EMI~~~~i~-~~w--------~~LeeLL~cYL~LN~~~~H~~Iv~AF~ 58 (66)
T TIGR01568 6 ESDDPYEDFRR------------------SMEEMIEERELE-ADW--------KELEELLACYLDLNPKKSHRFIVRAFV 58 (66)
T ss_pred CCCChHHHHHH------------------HHHHHHHHcCCC-CCH--------HHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 57899999986 455666653211 111 346677777777776655555555555
Q ss_pred HHh
Q 029146 173 QML 175 (198)
Q Consensus 173 ~lf 175 (198)
.++
T Consensus 59 dl~ 61 (66)
T TIGR01568 59 DIL 61 (66)
T ss_pred HHH
Confidence 544
No 6
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=46.06 E-value=7.8 Score=28.12 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=15.6
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCCc
Q 029146 49 HRMKVYFDASRPDHQEALRALWAATYPDQ 77 (198)
Q Consensus 49 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 77 (198)
....-.+||.|+ .+++|++||+.+..++
T Consensus 40 dyLA~~vdP~N~-EerlLkELW~va~e~E 67 (81)
T PF11588_consen 40 DYLAKNVDPKNP-EERLLKELWDVADEEE 67 (81)
T ss_dssp HHHHT-----SH-HHHHHHHHHHC--HHH
T ss_pred HHHHhcCCCCCH-HHHHHHHHHHhCCHHH
Confidence 345668899997 5789999999876543
No 7
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=36.74 E-value=61 Score=22.93 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 029146 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (198)
Q Consensus 35 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 69 (198)
+|+..|+..|..|++..++ +|.+|...|..+
T Consensus 25 ~lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~ 55 (73)
T PF03735_consen 25 PLSWEKEKLLTELRKELNI----SDEEHREELRRA 55 (73)
T ss_dssp S--HHHHHHHHHHHHHTT------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHH
Confidence 4899999999999877765 578888887766
No 8
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=34.27 E-value=17 Score=16.23 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.5
Q ss_pred hccCCC
Q 029146 89 EMGWQG 94 (198)
Q Consensus 89 ~lGFQ~ 94 (198)
.+||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 378887
No 9
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=30.64 E-value=3.6e+02 Score=26.35 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred hhhhh-hHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhh
Q 029146 106 FISLE-NLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLD 157 (198)
Q Consensus 106 ~LgL~-~LlyF~~~~~~~~~~il~~q~~~~~~~~yPfA~asIniT~~L~~~l~ 157 (198)
.|+.+ ||.++++..-...-.-+.. .++..||+|++.+-+-...-++-+
T Consensus 377 pl~~~~~~~~iaka~V~Q~Etev~~----~PeaAfPla~V~l~i~~q~Pdv~d 425 (591)
T KOG2412|consen 377 PLAYDWCLNFIAKAFVKQAETEVAS----KPEAAFPLAKVILYIWSQFPDVGD 425 (591)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh----CCcccchHHHHHHHHHHhCchHHH
Confidence 45665 7777777655433222322 355579999999887665544433
No 10
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=30.12 E-value=85 Score=28.63 Aligned_cols=90 Identities=24% Similarity=0.377 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCChhhHh-------------hccCCCCCCCCC
Q 029146 34 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWK-------------EMGWQGKDPSTD 100 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk-------------~lGFQ~~dP~tD 100 (198)
.+-...+++.+...+...+.+|+-++++-+.+..-+-+ +.| ...+.+|| .|||=.+.|+||
T Consensus 32 se~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~-s~p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~ 105 (350)
T KOG4404|consen 32 SENEARERERLERRLANLKRKYNLSEEDYRELERVILK-SEP-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTD 105 (350)
T ss_pred CcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh-cCc-----cccccccccCcceEEEEEEEeeeccCCCCCCCc
Confidence 33445677788888888999999887766655554433 333 24577887 588999999999
Q ss_pred cc-----cchhhhhh-hHHH---HHhhchHHHHHHHHH
Q 029146 101 FR-----GAGFISLE-NLLF---FAKTFSTSFQRLLRK 129 (198)
Q Consensus 101 FR-----g~G~LgL~-~Lly---F~~~~~~~~~~il~~ 129 (198)
-- .-|++|.. .|+. |.|+--...+.+++.
T Consensus 106 ~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~ 143 (350)
T KOG4404|consen 106 GGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRR 143 (350)
T ss_pred CceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 44566554 3444 345555555444443
No 11
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=29.78 E-value=22 Score=25.14 Aligned_cols=9 Identities=56% Similarity=0.973 Sum_probs=7.3
Q ss_pred CCCCCCCcc
Q 029146 94 GKDPSTDFR 102 (198)
Q Consensus 94 ~~dP~tDFR 102 (198)
.+||+||+-
T Consensus 58 kED~stDYA 66 (74)
T PF05083_consen 58 KEDPSTDYA 66 (74)
T ss_pred ccCCCcCee
Confidence 789999863
No 12
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=24.74 E-value=2.3e+02 Score=19.21 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=23.1
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCC
Q 029146 34 INLTPQQAERLRRLKHRMKVYFDASR 59 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~~~d~~~ 59 (198)
...|.-|+.+|+.|.+.++.+|+..-
T Consensus 14 ePmT~aQ~syL~tL~e~Age~~~~~L 39 (57)
T PF11272_consen 14 EPMTGAQASYLKTLSEEAGEPFPDDL 39 (57)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCCCcc
Confidence 45789999999999999999998874
No 13
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=20.34 E-value=2e+02 Score=23.56 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=28.3
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 029146 33 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWA 71 (198)
Q Consensus 33 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 71 (198)
-++||..|+..++.|.+..+-.....+.++.+.+..|-.
T Consensus 48 gLdLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh~LI~ 86 (166)
T PRK10363 48 GISLTEHQRQQMRDLMQQARHEQPPVNVSEMETMHRLVT 86 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHh
Confidence 389999999999999877665544555566666665543
No 14
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=20.02 E-value=95 Score=21.68 Aligned_cols=13 Identities=54% Similarity=0.879 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 029146 60 PDHQEALRALWAA 72 (198)
Q Consensus 60 ~~H~~~L~~Lw~~ 72 (198)
|+|.++|+++++.
T Consensus 2 PEH~e~L~~~~~e 14 (92)
T PF08863_consen 2 PEHKEALRELIKE 14 (92)
T ss_pred ChHHHHHHHHHHH
Confidence 4555555555543
Done!