Query 029146
Match_columns 198
No_of_seqs 126 out of 367
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d0w_A YFLH protein; GRAM-posi 42.5 9.1 0.00031 28.0 1.3 28 49-77 62-89 (104)
2 3o39_A Periplasmic protein rel 41.2 38 0.0013 24.5 4.6 36 34-69 16-51 (108)
3 1uz3_A EMSY protein; chromatin 39.7 36 0.0012 24.7 4.1 31 35-69 42-72 (102)
4 2fmm_E Protein EMSY; ENT domai 31.1 56 0.0019 24.8 4.1 53 35-91 34-90 (133)
5 3itf_A Periplasmic adaptor pro 25.8 70 0.0024 24.3 3.9 41 32-72 42-82 (145)
6 2k19_A Putative piscicolin 126 24.7 53 0.0018 23.6 2.8 22 34-55 75-96 (98)
7 2zrr_A Mundticin KS immunity p 20.6 51 0.0018 24.5 2.1 22 34-55 95-116 (118)
8 2c1w_A Endou protein, xendou; 19.5 98 0.0033 26.3 3.9 56 56-116 129-184 (292)
9 1g2y_A Hepatocyte nuclear fact 19.4 35 0.0012 19.6 0.8 16 33-48 2-17 (32)
10 3oeo_A Spheroplast protein Y; 18.5 91 0.0031 23.2 3.2 40 32-71 30-69 (138)
No 1
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=42.51 E-value=9.1 Score=27.99 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=21.7
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCCc
Q 029146 49 HRMKVYFDASRPDHQEALRALWAATYPDQ 77 (198)
Q Consensus 49 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 77 (198)
...--.+||.|+ .+++|++||+.+..++
T Consensus 62 dyLA~~vdP~N~-EerlLkELW~Va~eeE 89 (104)
T 3d0w_A 62 DYLAKHEEPQNG-EEMLLQELWSVADEDE 89 (104)
T ss_dssp HHHHTCCCCCSH-HHHHHHHHHHHCCHHH
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCHHH
Confidence 345668899997 5789999999876543
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=41.22 E-value=38 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=27.2
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 029146 34 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 69 (198)
++||..|+..++.|++..+...+....+..+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 899999999999999888777665554444445444
No 3
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=39.74 E-value=36 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 029146 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (198)
Q Consensus 35 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 69 (198)
+||..|+..|..|++..+ .+|.+|...|..+
T Consensus 42 ~Lsweke~LLt~LR~~L~----IS~eeH~~elrr~ 72 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 72 (102)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 489999999999987665 4688898887655
No 4
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=31.06 E-value=56 Score=24.79 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCC---Ccc-cCCCChhhHhhcc
Q 029146 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYP---DQE-LHGLISDQWKEMG 91 (198)
Q Consensus 35 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~---~~~-~~~~~~~~Wk~lG 91 (198)
+||..|+..|..|++..++ +|.+|...|.++-..-.- .+. ..+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~I----S~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLSI----STERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 4899999999999876655 588898877665331000 000 1234678999888
No 5
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=25.75 E-value=70 Score=24.32 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=28.4
Q ss_pred ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHH
Q 029146 32 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAA 72 (198)
Q Consensus 32 ~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~ 72 (198)
-.++||+.|+..++.|.+..+.....-+.+..+.|..|..+
T Consensus 42 ~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~a 82 (145)
T 3itf_A 42 DGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTA 82 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHcc
Confidence 34899999999999998766655555455555555555443
No 6
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=24.65 E-value=53 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.4
Q ss_pred ccCCHHHHHHHHHHHHhhcccc
Q 029146 34 INLTPQQAERLRRLKHRMKVYF 55 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~~~ 55 (198)
..||+.|...|..|++.+++-|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 6799999999999999888765
No 7
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=20.65 E-value=51 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=16.7
Q ss_pred ccCCHHHHHHHHHHHHhhcccc
Q 029146 34 INLTPQQAERLRRLKHRMKVYF 55 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~~~ 55 (198)
..||+.|.+.|..|++.+++-|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 6799999999999999888765
No 8
>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing independent processing; 2.2A {Xenopus laevis} SCOP: d.294.1.1
Probab=19.46 E-value=98 Score=26.34 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccCCCChhhHhhccCCCCCCCCCcccchhhhhhhHHHHH
Q 029146 56 DASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFA 116 (198)
Q Consensus 56 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~ 116 (198)
..+..++.+.|++||-..+....-....+.-|+.+ |-|+-= +|.-|+|++|=++|.
T Consensus 129 ~~d~~~Fk~~L~~iWF~~YsR~~g~~~dSSGFEHV-FvGE~k----~g~~V~G~HNWi~fY 184 (292)
T 2c1w_A 129 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGESK----RGQEMMGLHNWVQFY 184 (292)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCSS----SSCSCCCCCCHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhccCCCCCCCCCCccceE-EEEEee----cCCEEEEEehHHHHH
Confidence 44457899999999999887652223457788877 877531 244699999999985
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=19.36 E-value=35 Score=19.57 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=12.7
Q ss_pred cccCCHHHHHHHHHHH
Q 029146 33 CINLTPQQAERLRRLK 48 (198)
Q Consensus 33 ~~~L~~~Q~~~L~~L~ 48 (198)
..+||+.|++.|..|-
T Consensus 2 vskLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 2 VSKLSQLQTEMLAALL 17 (32)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 3678899999988764
No 10
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=18.55 E-value=91 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=28.2
Q ss_pred ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 029146 32 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWA 71 (198)
Q Consensus 32 ~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 71 (198)
-.++||+.|+..|+.|.+..+........+..+.|..|..
T Consensus 30 ~~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~ 69 (138)
T 3oeo_A 30 KDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIT 69 (138)
T ss_dssp CCSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999987776655334444455565543
Done!