Query 029146
Match_columns 198
No_of_seqs 126 out of 367
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 13:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029146.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029146hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c1wa1 d.294.1.1 (A:6-289) En 37.4 45 0.0032 26.3 7.1 57 56-117 124-180 (284)
2 d1uz3a1 a.283.1.1 (A:13-102) E 32.6 26 0.0019 23.1 4.1 32 34-69 29-60 (90)
3 d1wpba_ a.233.1.1 (A:) Hypothe 15.8 60 0.0044 23.5 3.5 42 31-73 2-43 (168)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 15.0 18 0.0013 28.6 0.4 40 56-97 387-427 (485)
5 d1x63a2 g.39.1.3 (A:45-76) Fou 11.8 23 0.0016 18.6 -0.0 18 5-22 6-25 (32)
6 d1dxea_ c.1.12.5 (A:) 2-dehydr 11.2 70 0.0051 24.2 2.9 54 47-100 177-236 (253)
7 d1olma1 a.5.3.1 (A:1-75) Super 11.1 1.1E+02 0.0084 18.2 3.4 20 34-53 6-25 (75)
8 d2ifta1 c.66.1.46 (A:11-193) P 7.8 58 0.0042 23.0 1.0 29 101-130 51-85 (183)
9 d1jeya1 b.131.1.1 (A:254-534) 7.4 4.2E+02 0.031 19.5 7.5 42 33-74 198-242 (281)
10 d1f28a_ d.117.1.1 (A:) Thymidy 6.8 2.1E+02 0.015 22.2 4.1 45 78-122 106-150 (295)
No 1
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=37.41 E-value=45 Score=26.34 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccCCCChhhHhhccCCCCCCCCCcccchhhhhhhHHHHHh
Q 029146 56 DASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAK 117 (198)
Q Consensus 56 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~~ 117 (198)
..+..+..+.|+.||-..+....-....+.-++.+ |-|+- -||.+|.|++|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 34556789999999999876542222334444443 55541 25678999999998864
No 2
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.62 E-value=26 Score=23.13 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=24.9
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 029146 34 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 69 (198)
-+|+..|+..|..|++..+ .+|.+|...|.++
T Consensus 29 g~lsweke~lLt~LR~~L~----IS~eeHr~elrr~ 60 (90)
T d1uz3a1 29 GDLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 60 (90)
T ss_dssp SSCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 3489999999999886655 5688898777655
No 3
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli [TaxId: 562]}
Probab=15.79 E-value=60 Score=23.54 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=31.5
Q ss_pred cccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHh
Q 029146 31 RICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAAT 73 (198)
Q Consensus 31 ~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~ 73 (198)
++...+|..|+..|.+..+.+. ..||+|.++-+.++++-...
T Consensus 2 e~~M~lt~~eRLiL~nq~~il~-~L~pena~~y~r~~~ive~G 43 (168)
T d1wpba_ 2 ESTMEMTNAQRLILSNQYKMMT-MLDPANAERYRRLQTIIERG 43 (168)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHT
T ss_pred CcccccCHHHHHHHHHHHHHHH-hhCccccccHHHHHHHHHcC
Confidence 4667899999999998776665 56899988776666665443
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.04 E-value=18 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccCCCChhhHhhc-cCCCCCC
Q 029146 56 DASRPDHQEALRALWAATYPDQELHGLISDQWKEM-GWQGKDP 97 (198)
Q Consensus 56 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQ~~dP 97 (198)
-.+|+.+.++|+.||....+ ..+ -.+|+.|.-| ||.|+||
T Consensus 387 QDts~~Q~~ll~~L~~~~~~-~~l-~~VGD~kQSIY~FRgad~ 427 (485)
T d1w36b1 387 QDTDPQQYRIFRRIWHHQPE-TAL-LLIGDPKQAIYAFRGADI 427 (485)
T ss_dssp GGCCHHHHHHHHHHHTTCTT-CEE-EEEECGGGCCCGGGTCCH
T ss_pred ccCCHHHHHHHHHHHhCCCC-CeE-EEEecCcchhccccCCCH
Confidence 34578889999999864211 111 1357888866 9999988
No 5
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.83 E-value=23 Score=18.64 Aligned_cols=18 Identities=28% Similarity=0.652 Sum_probs=12.1
Q ss_pred ccccccccce--eccccccc
Q 029146 5 DATCGTPTWI--GKGLTCVC 22 (198)
Q Consensus 5 ~~~~~~~~~~--~~~l~~~~ 22 (198)
.-++|+|+.+ |.+++|+.
T Consensus 6 kq~igsgsffpkg~d~ycvt 25 (32)
T d1x63a2 6 KQVIGTGSFFPKGEDFYCVT 25 (32)
T ss_dssp CCCCTTSCEEEETTEEEEHH
T ss_pred hhhcccccccCCCCcEEEEE
Confidence 4577888886 55567763
No 6
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=11.23 E-value=70 Score=24.22 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHhhccccCCCCHHHHHHHHHHHHHhCCCccc----C--CCChhhHhhccCCCCCCCCC
Q 029146 47 LKHRMKVYFDASRPDHQEALRALWAATYPDQEL----H--GLISDQWKEMGWQGKDPSTD 100 (198)
Q Consensus 47 L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~----~--~~~~~~Wk~lGFQ~~dP~tD 100 (198)
|..-++.|-+.++|++.+++.++-+++...... . ....++|.+.||+=-.-.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 334677888899999999999999887543321 1 12246899999986444444
No 7
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.07 E-value=1.1e+02 Score=18.21 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHHHHHhhcc
Q 029146 34 INLTPQQAERLRRLKHRMKV 53 (198)
Q Consensus 34 ~~L~~~Q~~~L~~L~~~~~~ 53 (198)
-+||+.|+..|..+++....
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 47999999999999988764
No 8
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=7.81 E-value=58 Score=23.00 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=22.5
Q ss_pred cccchhhhhhhHH------HHHhhchHHHHHHHHHh
Q 029146 101 FRGAGFISLENLL------FFAKTFSTSFQRLLRKQ 130 (198)
Q Consensus 101 FRg~G~LgL~~Ll------yF~~~~~~~~~~il~~q 130 (198)
|-|+|.+||++|- +|+++.++.. ++++++
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~N 85 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKN 85 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchh-hhHhhH
Confidence 7899999999994 4888888865 455543
No 9
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.40 E-value=4.2e+02 Score=19.52 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=29.7
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCC---CHHHHHHHHHHHHHhC
Q 029146 33 CINLTPQQAERLRRLKHRMKVYFDAS---RPDHQEALRALWAATY 74 (198)
Q Consensus 33 ~~~L~~~Q~~~L~~L~~~~~~~~d~~---~~~H~~~L~~Lw~~~~ 74 (198)
....++.|......|.+.+..+|||+ ||..++.-+-|-..+.
T Consensus 198 ~~~~~~eql~~a~~lI~~l~~~~~p~~~~NP~lq~~~~~l~a~al 242 (281)
T d1jeya1 198 KIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALAL 242 (281)
T ss_dssp CCCCCHHHHHHHHHHHHHTBCCCCTTSCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcccCCChhhCCCHHHHHHHHHHHHHhc
Confidence 35678899999999999999999997 4554444443333333
No 10
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]}
Probab=6.76 E-value=2.1e+02 Score=22.18 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=35.3
Q ss_pred ccCCCChhhHhhccCCCCCCCCCcccchhhhhhhHHHHHhhchHH
Q 029146 78 ELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122 (198)
Q Consensus 78 ~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~ 122 (198)
.+.+..+.+|+..|..-.+-.+|..+.|+=.|..++.-.++.|.+
T Consensus 106 dlGp~YG~qwr~~~~~~~~~~~~~~~~g~DQl~~vi~~lk~nP~s 150 (295)
T d1f28a_ 106 DLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYD 150 (295)
T ss_dssp BCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTC
T ss_pred CcccccchhhhhcCCccccccccCCCcCcHHHHHHHHhhhcCCCc
Confidence 345677999999999988889999998876666666666777764
Done!