Query 029147
Match_columns 198
No_of_seqs 165 out of 359
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 13:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a77a1 a.60.7.1 (A:209-316) F 28.7 9.3 0.00068 26.3 1.2 22 75-96 15-38 (108)
2 d1v8ha1 b.1.18.19 (A:2-107) Su 25.7 27 0.002 24.3 3.4 50 10-71 10-59 (106)
3 d1cmwa1 a.60.7.1 (A:174-289) 5 11.8 52 0.0038 22.0 2.0 23 68-96 17-39 (116)
4 d1gm5a2 b.40.4.9 (A:106-285) R 9.7 47 0.0034 23.7 1.1 31 75-106 10-40 (180)
5 d1xo1a1 a.60.7.1 (A:186-290) T 9.5 50 0.0036 22.5 1.2 22 69-96 19-40 (105)
6 d1rxwa1 a.60.7.1 (A:220-324) F 6.8 84 0.0061 21.0 1.4 24 67-96 14-37 (105)
7 d1kfta_ a.60.2.3 (A:) Excinucl 6.7 1E+02 0.0075 18.5 1.7 15 82-96 9-23 (56)
8 d2i1qa1 a.60.4.1 (A:5-64) DNA 6.2 83 0.0061 19.2 1.0 15 82-96 6-21 (60)
9 d1ah9a_ b.40.4.5 (A:) Translat 6.2 1.3E+02 0.0098 19.2 2.1 20 14-33 14-35 (71)
10 d1c20a_ a.4.3.1 (A:) DNA-bindi 6.0 93 0.0068 21.6 1.3 46 84-130 4-49 (128)
No 1
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=28.73 E-value=9.3 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.111 Sum_probs=16.6
Q ss_pred CCCCCC--CcCCCCchhhHHHHhC
Q 029147 75 TDTEKP--RMRGPKRASKIRKLFN 96 (198)
Q Consensus 75 Td~~~p--~~lgPKRaskIrKlFn 96 (198)
||.++| ...|||.|.++-+-|+
T Consensus 15 ~dyn~pGV~GIGpktA~klIk~~g 38 (108)
T d1a77a1 15 TDYNPGGVKGIGFKRAYELVRSGV 38 (108)
T ss_dssp CTTSTTCSTTCCHHHHHHHHHTTC
T ss_pred CcCCCCCCCCcCHHHHHHHHHHcC
Confidence 555443 5789999999988776
No 2
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=25.71 E-value=27 Score=24.30 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=33.2
Q ss_pred CcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcCC
Q 029147 10 PMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDL 71 (198)
Q Consensus 10 PMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~I 71 (198)
|++--.-..-+|++|++. |..+|-|+=+ .|..|.++ .|+.+++..+.+.+
T Consensus 10 p~~~~~G~v~~vk~li~H--------PMeTG~r~d~--~g~~IPa~--~I~~v~v~~ng~~v 59 (106)
T d1v8ha1 10 PAKPKAGEEFRLQVVAQH--------PNEPGTRRDA--EGKLIPAK--YINLVEVYFEGEKV 59 (106)
T ss_dssp SSSCCTTCEEEEEEEECC--------CCBCSCCBCT--TSCBCCCB--CEEEEEEEETTEEE
T ss_pred CCccCCCCeEEEEEEEEC--------CCccccccCC--CCCEecHH--heEEEEEEECCEEE
Confidence 544433344678999873 8888987754 48888766 46667777665543
No 3
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=11.76 E-value=52 Score=22.00 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=18.7
Q ss_pred CcCCCCCCCCCCCCcCCCCchhhHHHHhC
Q 029147 68 EHDLPGLTDTEKPRMRGPKRASKIRKLFN 96 (198)
Q Consensus 68 ek~I~gLTd~~~p~~lgPKRaskIrKlFn 96 (198)
...|||+. ..|||-|.++-+-|+
T Consensus 17 sDnipGv~------GiG~KtA~kll~~~g 39 (116)
T d1cmwa1 17 SDNLPGVK------GIGEKTARKLLEEWG 39 (116)
T ss_dssp SSCCCCCC------CSTTCTTTTTGGGGG
T ss_pred ccCccccc------ccCchhHHHHHHhcc
Confidence 46788874 589999999988886
No 4
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.75 E-value=47 Score=23.73 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCCCCCCcCCCCchhhHHHHhCCCCcchHhHh
Q 029147 75 TDTEKPRMRGPKRASKIRKLFNLSKEDDVRKY 106 (198)
Q Consensus 75 Td~~~p~~lgPKRaskIrKlFnLsk~ddV~ky 106 (198)
||.+.=+..|||++..+.++ |+..-.|+--|
T Consensus 10 ~~i~~lkGvGpk~~~~L~kl-gI~ti~DLL~~ 40 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKKL-GIETLRDLLEF 40 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHTT-TCCSSGGGTSC
T ss_pred CChhhcCCcCHHHHHHHHHh-CCCcHHHHHHh
Confidence 56666678999999999986 88877775444
No 5
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=9.51 E-value=50 Score=22.50 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.0
Q ss_pred cCCCCCCCCCCCCcCCCCchhhHHHHhC
Q 029147 69 HDLPGLTDTEKPRMRGPKRASKIRKLFN 96 (198)
Q Consensus 69 k~I~gLTd~~~p~~lgPKRaskIrKlFn 96 (198)
..|||+. ..|||.|.++-+-|+
T Consensus 19 DnipGV~------GiG~KtA~kli~~~g 40 (105)
T d1xo1a1 19 DNIRGVE------GIGAKRGYNIIREFG 40 (105)
T ss_dssp GTBCCCT------TCCHHHHHHHHHHHC
T ss_pred cCCcCcC------CcCHHHHHHHHHHcc
Confidence 4577764 589999999999887
No 6
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.78 E-value=84 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCcCCCCCCCCCCCCcCCCCchhhHHHHhC
Q 029147 67 GEHDLPGLTDTEKPRMRGPKRASKIRKLFN 96 (198)
Q Consensus 67 Gek~I~gLTd~~~p~~lgPKRaskIrKlFn 96 (198)
|..-|||+.. .|||.|-++=+-|+
T Consensus 14 GsDn~pGV~G------IG~ktA~kli~~~g 37 (105)
T d1rxwa1 14 GTDYNEGVKG------VGVKKALNYIKTYG 37 (105)
T ss_dssp CBTTBCCCTT------CCHHHHHHHHHHHS
T ss_pred CCCCCCCCCC------cCHHHHHHHHHHhC
Confidence 4455666554 79999999888886
No 7
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.72 E-value=1e+02 Score=18.48 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.6
Q ss_pred cCCCCchhhHHHHhC
Q 029147 82 MRGPKRASKIRKLFN 96 (198)
Q Consensus 82 ~lgPKRaskIrKlFn 96 (198)
..||++|.+|-+-|+
T Consensus 9 gVG~~~a~~L~~~F~ 23 (56)
T d1kfta_ 9 GVGPKRRQMLLKYMG 23 (56)
T ss_dssp TCSSSHHHHHHHHHS
T ss_pred CccHHHHHHHHHHhC
Confidence 479999999999997
No 8
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=6.19 E-value=83 Score=19.16 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.0
Q ss_pred cCCCCchhhHHHH-hC
Q 029147 82 MRGPKRASKIRKL-FN 96 (198)
Q Consensus 82 ~lgPKRaskIrKl-Fn 96 (198)
..||+++.++.+- |+
T Consensus 6 GIG~~~a~~L~~~G~~ 21 (60)
T d2i1qa1 6 GVGPSTAEKLVEAGYI 21 (60)
T ss_dssp TCCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHccCC
Confidence 4699999999886 53
No 9
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=6.19 E-value=1.3e+02 Score=19.21 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.4
Q ss_pred CCCCCCeEEEeecCCCc--ccc
Q 029147 14 GVLTPGRVRLLLHRGTP--CFR 33 (198)
Q Consensus 14 gVl~~gRv~lLLskG~s--~yr 33 (198)
.+|++++.++.|..|+. ||-
T Consensus 14 e~lg~~~f~V~l~ng~~~~a~i 35 (71)
T d1ah9a_ 14 ETLPNTMFRVELENGHVVTAHI 35 (71)
T ss_dssp EECSSSEEEEEETTSCEEEEEE
T ss_pred EEcCCCEEEEEeCCCCEEEEEc
Confidence 46899999999999985 555
No 10
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.00 E-value=93 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCCchhhHHHHhCCCCcchHhHhhhhhhccccccCCcccccCCCccc
Q 029147 84 GPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQR 130 (198)
Q Consensus 84 gPKRaskIrKlFnLsk~ddV~kyV~~~irr~~k~~kk~~~KaPKIQr 130 (198)
.+.+...|++||-++.+.+-..|... +..-+.....+-.+.|.|..
T Consensus 4 ~~~~~~~~~~l~e~~~~~er~~F~~~-L~~f~~~rg~~~~~~P~i~g 49 (128)
T d1c20a_ 4 FEEQFKQVRQLYEINDDPKRKEFLDD-LFSFMQKRGTPINRLPIMAK 49 (128)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTTTSSCSSCCCEETT
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHH-HHHHHHHcCCccCcCCeECC
Confidence 35678899999988766555556543 33334444566678888863
Done!