BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029148
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2
SV=1
Length = 198
Score = 273 bits (699), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYIT 178
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180
Query: 179 RHKYSIERLPEATVGGAPRI 198
H+Y+IER+P+ GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPRF 198
>sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2
SV=1
Length = 198
Score = 273 bits (699), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYIT 178
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180
Query: 179 RHKYSIERLPEATVGGAPRI 198
H+Y+IER+P+ GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPRF 198
>sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2
SV=1
Length = 198
Score = 273 bits (699), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYIT 178
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180
Query: 179 RHKYSIERLPEATVGGAPRI 198
H+Y+IER+P+ GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPRF 198
>sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2
SV=2
Length = 198
Score = 269 bits (688), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 160/200 (80%), Gaps = 4/200 (2%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQK+RVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYIT 178
LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+PGVPIMY++
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180
Query: 179 RHKYSIERLPEATVGGAPRI 198
H+Y+IER+P+ GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPRF 198
>sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1
Length = 189
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/193 (61%), Positives = 149/193 (77%), Gaps = 8/193 (4%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTH 57
MGKAKK KF + KR + K+ L N++++ TKE ++ RN+P VSSALFF +
Sbjct: 1 MGKAKKTRKFG-----LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQY 55
Query: 58 NTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 117
N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+
Sbjct: 56 NQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRI 115
Query: 118 ALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYI 177
AL++A+DPR +RL C+HKGTYADDCLV RV QHKC+IVAT D LK+RIRK+PG+P+M +
Sbjct: 116 ALKLARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSV 175
Query: 178 TRHKYSIERLPEA 190
H Y IE+LP+
Sbjct: 176 GGHAYVIEKLPDV 188
>sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fcf1 PE=3 SV=1
Length = 192
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/191 (57%), Positives = 145/191 (75%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
MGKAK KFA +K++I + + K+D +K ++ R +P ++S LFF N +
Sbjct: 1 MGKAKTTRKFAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELVREIPQMASNLFFQFNES 60
Query: 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
LGPPY V++DTNFINF +Q K+DL +G+M CLYAK PCI+DCVMAELEKLG +YR+ALR
Sbjct: 61 LGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALR 120
Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRH 180
IAKD RFERLPCTHKGTYADDC+V+RV QHKC++VAT D++LK+RIRK+PG+PI+ + H
Sbjct: 121 IAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVATNDKNLKQRIRKIPGIPILSVANH 180
Query: 181 KYSIERLPEAT 191
K +ERL +
Sbjct: 181 KIRVERLVDVV 191
>sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum
GN=fcf1 PE=3 SV=1
Length = 194
Score = 216 bits (550), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 98/184 (53%), Positives = 140/184 (76%), Gaps = 1/184 (0%)
Query: 7 APKFAAMKKI-ITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPY 65
APK ++K+ T N ++ + ++D ++K+ + +S +FF++N AL PPY
Sbjct: 8 APKKVPLQKLNKTNPNFSNRQKQIQRSKQEDEHRKKLEEIPEDNTSHMFFSYNEALVPPY 67
Query: 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDP 125
V++DTNFINFSI +KLD+ +MDCLYAKC P I+DCV AE+E+LG K++VAL+I+KDP
Sbjct: 68 HVIIDTNFINFSISHKLDIIHSLMDCLYAKCIPYISDCVAAEIERLGSKFKVALKISKDP 127
Query: 126 RFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIE 185
RF+RL C+HKGTYADDC++ R+T H+ FIVATCD DL+RRIRK+PGVPI+Y+ KY++E
Sbjct: 128 RFQRLTCSHKGTYADDCIINRITMHRMFIVATCDADLRRRIRKIPGVPIVYLKGKKYTVE 187
Query: 186 RLPE 189
R+P+
Sbjct: 188 RMPD 191
>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1
SV=2
Length = 249
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + + L + C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHK--CFIVATCDRDLKRRIRKVPG 171
A IA+ + P +CL+ V + + VAT D++L +++K PG
Sbjct: 75 DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKKKPG 134
Query: 172 VPIMYITRHKYSIERLPEATVG 193
VP+M+I ++ +++ T+
Sbjct: 135 VPLMFIIQNTMVLDKPSPKTIA 156
>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=utp23 PE=3 SV=1
Length = 260
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 53 LFFTHNTALG--PPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110
L T+ G PY+VLVD +F+ Q K+D++ + + P IT C + +L
Sbjct: 12 LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71
Query: 111 LGQKYRVALRIAKDPRFERLPCTH--KGTYADDCLVERV-----TQHKCFIVATCDRDLK 163
+ + +RIAK FER C H + +C+ V +H+ ++VAT D +L+
Sbjct: 72 KSDELKQEIRIAKS--FERRRCGHIDEALSPSECIQSVVNINGRNKHR-YVVATQDPELR 128
Query: 164 RRIRKVPGVPIMYITRHKYSIERLPEATV 192
+ +R VPGVP++Y+ R +E AT+
Sbjct: 129 QALRSVPGVPLIYMKRSVVILEPASRATL 157
>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2
SV=1
Length = 248
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + + L A+ C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMAETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCL---VERVTQHKCFIVATCDRDLKRRIRKVP 170
A IA+ + P +CL VE H F+ AT D++L +++K P
Sbjct: 75 DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFL-ATQDQNLSMKVKKKP 133
Query: 171 GVPIMYITRHKYSIER 186
G+P+M+I ++ +++
Sbjct: 134 GIPLMFIIQNTIVLDK 149
>sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2
SV=1
Length = 249
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + L + C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHK--CFIVATCDRDLKRRIRKVPG 171
+ A IA+ + P +CL+ V + + VAT D++L ++++ PG
Sbjct: 75 ELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVATQDQNLSVKVKRTPG 134
Query: 172 VPIMYITRHKYSIERLPEATV 192
+P+M+I ++ +++ TV
Sbjct: 135 IPLMFIIQNTIVLDKPSPRTV 155
>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1
Length = 254
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 53 LFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG 112
L ++H PY+VLVD + + +L G+ L A IT C + L +
Sbjct: 14 LVYSHTFKFREPYQVLVDNQLVLECNNSNFNLPSGLKRTLQADVKVMITQCCIQALYET- 72
Query: 113 QKYRVALRIAKDPRFERLPCTHKGTYAD-----DCL-----VERVTQHKCFIVATCDRDL 162
+ A+ +AK +FER C H ++ D +C+ + +H+ ++VA+ D DL
Sbjct: 73 -RNDGAINLAK--QFERRRCNH--SFKDPKSPAECIESVVNISGANKHR-YVVASQDIDL 126
Query: 163 KRRIRKVPGVPIMYITRHKYSIERLPEATVGGA 195
+R++R VPGVP++++TR +E L A+ +
Sbjct: 127 RRKLRTVPGVPLIHLTRSVMVMEPLSTASAKAS 159
>sp|Q58716|VAPC4_METJA Putative ribonuclease VapC4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=vapC4 PE=3 SV=1
Length = 131
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL--------GQKYR 116
Y+++ DTNF+ + ++K++ + + L K I + ELE+L +K
Sbjct: 2 YKIVPDTNFLIYVFKHKINFDYEIERALNTKFEIVILSPIKEELERLLKSRDLKGKEKLA 61
Query: 117 VALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMY 176
V L +AK ++ + T YAD+ ++ +++ IVAT D++LK ++ + +P+M
Sbjct: 62 VNLALAKIKNYKLVDYT--ANYADEAILNYAKENENVIVATNDKELKEKLME-NNIPVMV 118
Query: 177 ITRHKY 182
+ + KY
Sbjct: 119 VRQKKY 124
>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1
Length = 231
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 95 KCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFI 154
K TP IT C +A L LG RV L + PRF KGT+ + V + K +
Sbjct: 153 KITPTITHCSLATLIGLG--IRVRLERSLPPRFRITILLKKGTHDSENQVNKQLNDKERV 210
Query: 155 VATCDRD 161
A C+ +
Sbjct: 211 AAACENE 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,154,496
Number of Sequences: 539616
Number of extensions: 2915496
Number of successful extensions: 5961
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5937
Number of HSP's gapped (non-prelim): 16
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)