Query 029148
Match_columns 198
No_of_seqs 213 out of 508
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4w_A PIN (PILT N-terminus) d 99.9 1.1E-22 3.9E-27 160.2 10.9 119 55-182 13-140 (147)
2 3ix7_A Uncharacterized protein 99.0 2.3E-09 8E-14 84.5 10.0 104 67-179 8-124 (134)
3 2dok_A Telomerase-binding prot 98.8 1.3E-08 4.3E-13 83.1 7.1 107 64-178 12-177 (186)
4 3i8o_A KH domain-containing pr 98.7 6.4E-08 2.2E-12 77.0 8.8 108 66-180 5-133 (142)
5 2lcq_A Putative toxin VAPC6; P 97.0 0.00032 1.1E-08 55.7 2.8 93 66-178 12-122 (165)
6 3zvk_A VAPC2, toxin of toxin-a 96.4 0.015 5.2E-07 43.1 8.1 102 66-175 2-130 (134)
7 3tnd_A TRNA(FMet)-specific end 96.1 0.068 2.3E-06 39.3 10.2 100 66-175 3-129 (132)
8 1v96_A Hypothetical protein PH 95.4 0.039 1.3E-06 41.5 6.7 104 65-176 5-132 (149)
9 2fe1_A Conserved hypothetical 94.7 0.029 9.9E-07 43.3 4.2 104 66-173 27-156 (156)
10 1w8i_A Putative VAPC ribonucle 94.7 0.11 3.8E-06 39.7 7.5 98 66-164 2-126 (156)
11 3h87_A Putative uncharacterize 94.4 0.16 5.4E-06 39.9 7.9 111 61-178 15-150 (156)
12 2hwy_A Protein SMG5; RNA degra 93.5 0.092 3.2E-06 42.4 5.0 50 67-122 5-57 (164)
13 2h1c_A Trafficking protein B; 93.2 0.44 1.5E-05 34.6 8.0 99 67-175 2-134 (139)
14 3dbo_B Uncharacterized protein 91.1 0.24 8.3E-06 38.4 4.5 104 62-175 18-148 (150)
15 1v8p_A Hypothetical protein PA 80.0 7 0.00024 30.3 7.6 92 67-168 30-144 (158)
16 2wp8_J Exosome complex exonucl 74.4 22 0.00077 35.5 11.1 111 61-179 58-196 (977)
17 3v32_B Ribonuclease ZC3H12A; r 37.2 45 0.0015 26.9 4.8 43 137-182 112-163 (185)
18 3h7i_A Ribonuclease H, RNAse H 36.5 15 0.00052 32.1 2.0 51 135-186 127-181 (305)
19 2lqo_A Putative glutaredoxin R 28.5 35 0.0012 23.9 2.5 33 153-185 33-69 (92)
20 3q8k_A Flap endonuclease 1; he 26.2 97 0.0033 26.8 5.4 34 138-176 157-190 (341)
21 8tfv_A Protein (thanatin); bac 25.8 27 0.00094 18.4 1.1 12 170-181 4-15 (21)
22 1wik_A Thioredoxin-like protei 25.4 47 0.0016 23.2 2.7 28 154-181 50-80 (109)
23 1ul1_X Flap endonuclease-1; pr 23.9 35 0.0012 30.0 2.1 28 138-165 157-184 (379)
24 1exn_A 5'-exonuclease, 5'-nucl 22.4 47 0.0016 28.5 2.6 37 136-174 125-165 (290)
25 2yan_A Glutaredoxin-3; oxidore 22.3 61 0.0021 22.2 2.8 28 153-180 51-81 (105)
26 2ct6_A SH3 domain-binding glut 21.5 63 0.0021 22.8 2.8 28 154-181 44-82 (111)
27 1t1v_A SH3BGRL3, SH3 domain-bi 20.8 51 0.0017 22.2 2.1 27 154-180 38-69 (93)
28 3qmx_A Glutaredoxin A, glutare 20.6 1.5E+02 0.0051 20.3 4.6 28 153-180 45-76 (99)
29 1pqx_A Conserved hypothetical 20.5 1.1E+02 0.0038 21.8 3.9 33 158-190 37-69 (91)
30 1vd6_A Glycerophosphoryl diest 20.3 3.1E+02 0.011 21.4 8.5 81 99-180 63-153 (224)
No 1
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=99.88 E-value=1.1e-22 Score=160.24 Aligned_cols=119 Identities=29% Similarity=0.409 Sum_probs=96.8
Q ss_pred HHhhhCCCCCeE-EEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhh--------hhHHHHHhccCC
Q 029148 55 FTHNTALGPPYR-VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ--------KYRVALRIAKDP 125 (198)
Q Consensus 55 y~~n~~~~~PY~-VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~--------k~~~Al~iak~~ 125 (198)
...|||||+||+ +|+|||++++++..+.++.+.+.+++. ..++||.||+.||+.+.. ..+.++.++.
T Consensus 13 ~~~~~~~~~pmk~vvLDTNvli~~~~~~~~~~~~l~~~l~--~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~-- 88 (147)
T 1o4w_A 13 MEADRGRNNKVRCAVVDTNVLMYVYLNKADVVGQLREFGF--SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLE-- 88 (147)
T ss_dssp ---------CCEEEEECHHHHHHHHHHTCCHHHHHHHTTE--EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHT--
T ss_pred hhhhhccCCCCCEEEEEhhHHHHHHHcCchHHHHHHHhcc--CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHh--
Confidence 457999999999 999999999999999999999999876 789999999999999863 3456677777
Q ss_pred CeeeeecCCCCCCHHHHHHHHHhcCCeEEEEecCHHHHHHHhcCCCccEEEEeCceE
Q 029148 126 RFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRHKY 182 (198)
Q Consensus 126 r~e~~~C~H~g~~aDdCIv~~v~~~~~yiVATnD~~LrrrLRkipGVPIiyi~~~~~ 182 (198)
.++.+.|+ .+ + |+||++.+..++ ++|+|+|++|+++++.. |||+++++++++
T Consensus 89 ~~~vv~~~-~~-~-D~~Ila~A~~~~-~~LvT~D~~l~~~a~~~-Gv~vi~~~~~~~ 140 (147)
T 1o4w_A 89 HFEVVETE-SE-G-DPSLIEAAEKYG-CILITNDKELKRKAKQR-GIPVGYLKEDKR 140 (147)
T ss_dssp TSEEECCS-SC-S-HHHHHHHHHHHT-CEEECCCHHHHHHHHHT-TCCEECCCCCCC
T ss_pred cCcEeeCC-CC-c-hHHHHHHHHHhC-CEEEECCHHHHHHHHHC-CCeEEEecCCcE
Confidence 47778887 44 7 999999998887 79999999999999996 999999999754
No 2
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=98.99 E-value=2.3e-09 Score=84.52 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=74.3
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhh--------hhHHHHHhccC----CCeeeeecCC
Q 029148 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ--------KYRVALRIAKD----PRFERLPCTH 134 (198)
Q Consensus 67 VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~--------k~~~Al~iak~----~r~e~~~C~H 134 (198)
.++|||+|+..- +.+.+..-+.. -.++||.+|++||+.+.. +.+.+|++.+. ..++... +.
T Consensus 8 ~vlDTSviIdGr-----i~~~~~~gf~e-g~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~-~~ 80 (134)
T 3ix7_A 8 KVLDTSVLVDGR-----VAEVAAVGFLE-GPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE-TT 80 (134)
T ss_dssp EEECHHHHHHCH-----HHHHHTTTCCC-SCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-CC
T ss_pred eEcccceEEecH-----HHHHHHhcccc-CceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-CC
Confidence 477999998541 22222222211 269999999999999972 34567766652 1144443 22
Q ss_pred -CCCCHHHHHHHHHhcCCeEEEEecCHHHHHHHhcCCCccEEEEeC
Q 029148 135 -KGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITR 179 (198)
Q Consensus 135 -~g~~aDdCIv~~v~~~~~yiVATnD~~LrrrLRkipGVPIiyi~~ 179 (198)
.+..+|+.|++++.+.++ +|.|||..|++.++. -|||++|++.
T Consensus 81 ~~~~~vD~~ll~lA~~~~~-~lvTnD~~L~kvA~~-~GI~Vl~l~~ 124 (134)
T 3ix7_A 81 PKGESVDEKLLFLARDLEA-ALVTNDHALLQMARI-YGVKALSIQA 124 (134)
T ss_dssp CSCSSHHHHHHHHHHHTTC-EEEESCHHHHHHHHH-TTCCEEEHHH
T ss_pred CCcccHHHHHHHHHHHhCC-EEEeCCHHHHHHHHH-CCCeEEehHH
Confidence 235799999999999885 999999999999998 7999999864
No 3
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=98.77 E-value=1.3e-08 Score=83.08 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=72.3
Q ss_pred CeEEEeehHHHHHHHHcCCChHHhHHHhhc-ccceEeecHHHHHHHHHhhh-----------------hhHHHHHhccC-
Q 029148 64 PYRVLVDTNFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELEKLGQ-----------------KYRVALRIAKD- 124 (198)
Q Consensus 64 PY~VLvDtNFl~~~i~~kldl~~~L~~~L~-~k~~~~iT~CVi~ELekLg~-----------------k~~~Al~iak~- 124 (198)
|..+++|||+|+... +.|.++.. +...++||..|++||+.|.. ..|.|+++..+
T Consensus 12 ~~~~VlDTNvLl~~~-------~~l~~~~~~~~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~ 84 (186)
T 2dok_A 12 PLFLVPDTNGFIDHL-------ASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQR 84 (186)
T ss_dssp EEEEEECHHHHHHHH-------HHHHHHHHHTSSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEhHHHHcCH-------HHHHHHHcCCCeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHH
Confidence 456899999997753 34444332 45789999999999999843 34555555432
Q ss_pred -----CCeee----------eecCCC-----CCCHHHHHHHHHhcC--------------------CeEEEEecCHHHHH
Q 029148 125 -----PRFER----------LPCTHK-----GTYADDCLVERVTQH--------------------KCFIVATCDRDLKR 164 (198)
Q Consensus 125 -----~r~e~----------~~C~H~-----g~~aDdCIv~~v~~~--------------------~~yiVATnD~~Lrr 164 (198)
+.+.. +...+. ...+|+.|++.|... ...++.|+|.+||.
T Consensus 85 ~~~~~~~i~~~~~~g~~l~~v~~~~~~~~~~~~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~ 164 (186)
T 2dok_A 85 FESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRV 164 (186)
T ss_dssp HHTTCTTEEEECTTSCEESCCTTCCCCC----CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHH
T ss_pred HhhCCCeEEEEeccCcccccccccccccccCCCCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHH
Confidence 11110 001111 246899999999631 14689999999999
Q ss_pred HHhcCCCccEEEEe
Q 029148 165 RIRKVPGVPIMYIT 178 (198)
Q Consensus 165 rLRkipGVPIiyi~ 178 (198)
+++. -|||++.++
T Consensus 165 KA~~-~Gi~~~~~~ 177 (186)
T 2dok_A 165 KALT-RNVPVRDIP 177 (186)
T ss_dssp HHHH-TTCCEECHH
T ss_pred HHHH-CCCeeCcHH
Confidence 9999 799988654
No 4
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=98.69 E-value=6.4e-08 Score=77.05 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=76.9
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhhh----hHHHHHhccC---------CCeeeeec
Q 029148 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK----YRVALRIAKD---------PRFERLPC 132 (198)
Q Consensus 66 ~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~k----~~~Al~iak~---------~r~e~~~C 132 (198)
.+++|||.|+.-- +.+.+..-+.....++||..|++||+.+... -+.+|.+++. -.++...-
T Consensus 5 ~~vlDTSviIdGr-----I~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~ 79 (142)
T 3i8o_A 5 KVCVDTCVVIDGR-----ITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGE 79 (142)
T ss_dssp EEEECHHHHHTTH-----HHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESC
T ss_pred EEEeecceEEEcH-----HHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEEEecc
Confidence 6899999998632 3444443343345799999999999999643 3456665541 01222110
Q ss_pred C-------C-CCCCHHHHHHHHHhcCCeEEEEecCHHHHHHHhcCCCccEEEEeCc
Q 029148 133 T-------H-KGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITRH 180 (198)
Q Consensus 133 ~-------H-~g~~aDdCIv~~v~~~~~yiVATnD~~LrrrLRkipGVPIiyi~~~ 180 (198)
. + .+..+|+-|+++|.+.++ .+.|||..|++.++. -|||++|+++.
T Consensus 80 r~~~~~i~~~~~~~vD~~l~~lA~~~~a-~lvTnD~~l~kvA~~-~GI~V~~l~~~ 133 (142)
T 3i8o_A 80 RPTREEIFLAKSGEIDAMIRKVAKETNS-ILLTSDWIQYNLAKA-QGIEAYFLEAA 133 (142)
T ss_dssp CCCHHHHHSCCSSSHHHHHHHHHHHTTC-EEEESCHHHHHHHHH-TTCCEEECCCC
T ss_pred cCchhhhccccCCcHHHHHHHHHHHhCC-EEEcCCHHHHHHHHH-cCCEEEEeccc
Confidence 0 0 124789999999999884 899999999999999 79999999875
No 5
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=97.00 E-value=0.00032 Score=55.69 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=63.4
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhhhhHHHHHhcc-CCCeeeeecC-----------
Q 029148 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAK-DPRFERLPCT----------- 133 (198)
Q Consensus 66 ~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~k~~~Al~iak-~~r~e~~~C~----------- 133 (198)
.+|+|||.|+... ++ .++||..|++||.... .+..+.... ...++...=.
T Consensus 12 ~~VlDTs~lI~~~----~~------------~l~~p~~V~~El~~~~--~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~ 73 (165)
T 2lcq_A 12 TLVLDSSVFIQGI----DI------------EGYTTPSVVEEIKDRE--SKIFLESLISAGKVKIAEPSKESIDRIIQVA 73 (165)
T ss_dssp SCEECHHHHHHTC----CC------------CEEECHHHHTTCCSSH--HHHHHHHHHHTTSEEECCCCHHHHHHHHHHH
T ss_pred EEEEcChHHHcCC----CC------------CEEEChhhHHhhcCHH--HHHHHHHhhccCCEEEecCCHHHHHHHHHHH
Confidence 4699999999843 21 7899999999996432 222232221 1112221100
Q ss_pred -CCC-----CCHHHHHHHHHhcCCeEEEEecCHHHHHHHhcCCCccEEEEe
Q 029148 134 -HKG-----TYADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYIT 178 (198)
Q Consensus 134 -H~g-----~~aDdCIv~~v~~~~~yiVATnD~~LrrrLRkipGVPIiyi~ 178 (198)
..| ..+|..++.++.+.+. .|.|+|..|++.++. -||+++.+.
T Consensus 74 ~~~gd~~~Ls~~D~~lIaLA~~l~~-~lvT~D~~l~~vA~~-~Gv~v~~~~ 122 (165)
T 2lcq_A 74 KETGEVNELSKADIEVLALAYELKG-EIFSDDYNVQNIASL-LGLRFRTLK 122 (165)
T ss_dssp HHHSCSSCSCHHHHHHHHHHHHHTC-CEECCCHHHHHHHHH-TTCCEECCS
T ss_pred HHcCCcccCCHHHHHHHHhHHHhCC-eEEcCcHHHHHHHHH-CCCeEEchh
Confidence 011 2488999999988774 888999999999999 699999887
No 6
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=96.39 E-value=0.015 Score=43.06 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=61.6
Q ss_pred EEEeehHHHHHHHHcCCC-hHHhHHHhhcccceEeecHHHHHHHHHhhhh------hHHHHH-hccCCCeeeeecC----
Q 029148 66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQK------YRVALR-IAKDPRFERLPCT---- 133 (198)
Q Consensus 66 ~VLvDtNFl~~~i~~kld-l~~~L~~~L~~k~~~~iT~CVi~ELekLg~k------~~~Al~-iak~~r~e~~~C~---- 133 (198)
.+|+|||.++..+...-. +.+.+..+.. .-.++|+.-++.|+...-.+ ....+. +.. .++.++.+
T Consensus 2 ~~llDTnvli~~~~~~~~~~~~~l~~~~~-~~~~~is~i~~~El~~~~~~~~~~~~~~~~l~~~l~--~~~il~~~~~~~ 78 (134)
T 3zvk_A 2 IYMLGTNICVYAINKHPDSYYNNLELLAK-NNTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFLS--RLEIIDFSAKCT 78 (134)
T ss_dssp EEEECHHHHHHHHHHCCHHHHHHHHHHHT-TSEEEEEHHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TSEEECBCHHHH
T ss_pred eEEeeHHHHHHHHcCCcHHHHHHHHhcCc-CCcEEeeheeHHHHHHHHHhcCCHHHHHHHHHHHHh--cCceecCCHHHH
Confidence 589999999999887643 3344444332 24789999999999754221 111111 122 35444432
Q ss_pred --------------CCCCCHHHHHHHHHhcCCeEEEEecC-HHHHHHHhcCCCccEE
Q 029148 134 --------------HKGTYADDCLVERVTQHKCFIVATCD-RDLKRRIRKVPGVPIM 175 (198)
Q Consensus 134 --------------H~g~~aDdCIv~~v~~~~~yiVATnD-~~LrrrLRkipGVPIi 175 (198)
|.-..+|--|...+..+++ .+.|.| +++ ..+||+.++
T Consensus 79 ~~a~~l~~~~~~~g~~~~~~D~lIaA~A~~~~~-~lvT~d~~df----~~~~gl~~~ 130 (134)
T 3zvk_A 79 FYYGELRTELEQKGLIIGNNDLLIASHAIAENA-TLVTNNIKEF----KRIPNLILE 130 (134)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-EEEESSTTTS----CSCTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHCCC-EEEECCHHHh----cCCCCCeee
Confidence 1112344445566777886 788999 655 457888765
No 7
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=96.08 E-value=0.068 Score=39.35 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=61.3
Q ss_pred EEEeehHHHHHHHHcCCC-hHHhHHHhhcccceEeecHHHHHHHHHhhhh------hHHHHH-hccCCCeeeeecC----
Q 029148 66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQK------YRVALR-IAKDPRFERLPCT---- 133 (198)
Q Consensus 66 ~VLvDtNFl~~~i~~kld-l~~~L~~~L~~k~~~~iT~CVi~ELekLg~k------~~~Al~-iak~~r~e~~~C~---- 133 (198)
++|+|||.++..+...-. +.+.+.... -.++|+.-++.|+...-.+ ....+. +.. .++.++-+
T Consensus 3 ~~llDTnvli~~~~~~~~~~~~~l~~~~---~~~~iS~i~~~El~~~~~~~~~~~~~~~~l~~~l~--~~~il~~~~~~~ 77 (132)
T 3tnd_A 3 KFMLDTNICIFTIKNKPASVRERFNLNQ---GKMCISSVTLMELIYGAEKSQMPERNLAVIEGFVS--RIDVLDYDAAAA 77 (132)
T ss_dssp CEEECHHHHHHHHHHCCHHHHHHHHHHT---TSEEEEHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--TSEEECBCHHHH
T ss_pred eeeeeHHHHHHHHcCCcHHHHHHHHhcC---CCEEeeHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--cCcccCCCHHHH
Confidence 479999999999887644 344444432 3689999999999764221 111111 112 34444422
Q ss_pred -----------CCC--CC-HHHHHHHHHhcCCeEEEEecC-HHHHHHHhcCCCccEE
Q 029148 134 -----------HKG--TY-ADDCLVERVTQHKCFIVATCD-RDLKRRIRKVPGVPIM 175 (198)
Q Consensus 134 -----------H~g--~~-aDdCIv~~v~~~~~yiVATnD-~~LrrrLRkipGVPIi 175 (198)
|.| .. .|--|...+..+++ .+.|.| +++ ..+||+.+.
T Consensus 78 ~~a~~l~~~~~~~g~~~~~~D~lIaA~A~~~~~-~lvT~d~~dF----~~~~gl~v~ 129 (132)
T 3tnd_A 78 THTGQIRAELARQGRPVGPFDQMIAGHARSRGL-IIVTNNTREF----ERVGGLRTE 129 (132)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTC-EEEESCCHHH----HTSTTCCEE
T ss_pred HHHHHHHHHHHHCCCCCCchHHHHHHHHHHcCC-EEEECCHHHh----CCCCCCeec
Confidence 112 23 44445566777886 788998 776 457899875
No 8
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=95.43 E-value=0.039 Score=41.55 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=59.1
Q ss_pred eEEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhhh----hHHHH-HhccCCCeeeeecC------
Q 029148 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK----YRVAL-RIAKDPRFERLPCT------ 133 (198)
Q Consensus 65 Y~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~k----~~~Al-~iak~~r~e~~~C~------ 133 (198)
-.+++|||.++..+. +-...+.+.+.....++++.-++.|+...-.+ -...+ .+.. .++.+..+
T Consensus 5 ~~~llDTnvli~~l~---~~~~~~~~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~~~l~--~~~il~~~~~~~~~ 79 (149)
T 1v96_A 5 PDITFDSLALIKMHS---QNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEFEILKD--IYNIVPLLDDIAIK 79 (149)
T ss_dssp SEEEECHHHHHHHTS---GGGHHHHHHHHHHCEEEEEHHHHHHHHHHC--CCSCHHHHHHHHHH--HSEEECCCHHHHHH
T ss_pred CEEEeehHHHHHHHc---cchHHHHHHHhcCCCEEeeHhhHHHHHHHHHhcCcchHHHHHHHHh--cCCeeCCCHHHHHH
Confidence 469999999999875 22234444443445689999999999853211 01111 1111 12233322
Q ss_pred -------C--CC--CCHHHHH-HHHHhcCCeEEEEecCH-HHHHHHhcCCCccEEE
Q 029148 134 -------H--KG--TYADDCL-VERVTQHKCFIVATCDR-DLKRRIRKVPGVPIMY 176 (198)
Q Consensus 134 -------H--~g--~~aDdCI-v~~v~~~~~yiVATnD~-~LrrrLRkipGVPIiy 176 (198)
+ .| .+..||+ ...+..+++ .+.|+|. ++.+ +.. .|++++.
T Consensus 80 a~~l~~~~~~~g~~~~~~D~lIaA~A~~~~~-~lvT~D~kdf~~-i~~-~~i~~i~ 132 (149)
T 1v96_A 80 AAQIEANLIKKEITLDMEDIITATTAIYTNS-LLVTDDPKRYEP-IRR-FGLDTMP 132 (149)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-EEEESCHHHHGG-GGG-GTCCEEE
T ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHcCC-EEEECCHHHHhh-hhh-CCeeecC
Confidence 0 12 2445555 466777787 6889995 6643 555 3677664
No 9
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=94.73 E-value=0.029 Score=43.28 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=62.6
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhh-h----------hhHHHHHh----ccCCCeeee
Q 029148 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG-Q----------KYRVALRI----AKDPRFERL 130 (198)
Q Consensus 66 ~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg-~----------k~~~Al~i----ak~~r~e~~ 130 (198)
.+++|||.++..+... +..+.+.+.+.....++++.-++.|+...- . ....++.. .....+...
T Consensus 27 ~ivlDTsvli~~l~~~-~~~~~a~~~l~~~~~~~is~~~~~Ev~~vl~r~~~~~~l~~~~~~~~l~~~~~~l~~l~i~~~ 105 (156)
T 2fe1_A 27 ELVVDASAIAALYVPE-ERSEQAERAVSQAQELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFKALKVHSY 105 (156)
T ss_dssp EEEECHHHHHTTSSSC-CCCHHHHHHHHHCSEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSEEECG
T ss_pred eEEEEHHHHHHHHhCC-CCcHHHHHHHhhccCeehHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 5899999999987553 223555666654457899999999996421 1 11222222 221011111
Q ss_pred e----------cCCCCCC-HHHHHHHHHhcCCeEEEEecCHHHHHHHhcCCCcc
Q 029148 131 P----------CTHKGTY-ADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVP 173 (198)
Q Consensus 131 ~----------C~H~g~~-aDdCIv~~v~~~~~yiVATnD~~LrrrLRkipGVP 173 (198)
. -.| +-. .|.-++..+..+++- ++|.|++|.+..++ -|+|
T Consensus 106 ~~~~~~A~~l~~~~-~l~~~Dal~lA~A~~~~~~-LvT~D~~l~~~a~~-~Gi~ 156 (156)
T 2fe1_A 106 AEVLKDAFALALKH-GVTVYDAAYVALAEKIGGK-LLTLDRQLAEKFPA-LVTP 156 (156)
T ss_dssp GGTHHHHHHHHHHH-TCCHHHHHHHHHHHHHTCE-EECSCHHHHHHCTT-TBC-
T ss_pred hHHHHHHHHHHHHh-CcCHHHHHHHHHHHHcCCC-EEeCCHHHHHHHHH-cCCC
Confidence 1 011 223 344456777777764 99999999999888 5775
No 10
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=94.69 E-value=0.11 Score=39.70 Aligned_cols=98 Identities=12% Similarity=-0.071 Sum_probs=58.4
Q ss_pred EEEeehHHHHHHHHcCCChHH----hHH-HhhcccceEeecHHHHHHHHHhhh----hhHHHHHhc-cCCCeeeeec---
Q 029148 66 RVLVDTNFINFSIQNKLDLEK----GMM-DCLYAKCTPCITDCVMAELEKLGQ----KYRVALRIA-KDPRFERLPC--- 132 (198)
Q Consensus 66 ~VLvDtNFl~~~i~~kldl~~----~L~-~~L~~k~~~~iT~CVi~ELekLg~----k~~~Al~ia-k~~r~e~~~C--- 132 (198)
.++||||++++.+...=...+ .+. .+..+...++|+.-|+.|+...-. .....++.. ..+.++.+..
T Consensus 2 mi~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~~~~~v~~~~~~ 81 (156)
T 1w8i_A 2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDE 81 (156)
T ss_dssp EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCCHH
T ss_pred eEEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCeEEEeCCHH
Confidence 489999999998865433222 233 333446789999999999976422 122222221 1123443332
Q ss_pred -----------CCC--CCC-HHHHHHHHHhcCCeEEEEecCHHHHH
Q 029148 133 -----------THK--GTY-ADDCLVERVTQHKCFIVATCDRDLKR 164 (198)
Q Consensus 133 -----------~H~--g~~-aDdCIv~~v~~~~~yiVATnD~~Lrr 164 (198)
.+. +.. +|-.|...+..+++ .++|.|+++.+
T Consensus 82 ~~~~A~~l~~~~~~~~~l~~~Dali~A~A~~~g~-~l~T~D~dF~~ 126 (156)
T 1w8i_A 82 VERKALEVFKARVYEKGFSYTDAISEVVAEELKL-KLISYDSRFSL 126 (156)
T ss_dssp HHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHHTC-EEECSCTTCSS
T ss_pred HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHcCC-EEEEeCcccCc
Confidence 121 233 44445567778888 99999988765
No 11
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=94.44 E-value=0.16 Score=39.94 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=66.0
Q ss_pred CCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhh---hhHHHHHh--ccCCCeeeeecC--
Q 029148 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ---KYRVALRI--AKDPRFERLPCT-- 133 (198)
Q Consensus 61 ~~~PY~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~---k~~~Al~i--ak~~r~e~~~C~-- 133 (198)
...+..+|||||.++..++.. ..+.+.+.+... .++|+.-++.||..-.. .......+ .. .|+.++.+
T Consensus 15 ~~~~~~~LLDTnvli~~l~~~--~~~~l~~~~~~~-~l~iS~it~~El~~G~~~~~~~~~l~~~~~L~--~~~vlp~d~~ 89 (156)
T 3h87_A 15 MVTDQRWLIDKSALVRLTDSP--DMEIWSNRIERG-LVHITGVTRLEVGFSAECGEIARREFREPPLS--AMPVEYLTPR 89 (156)
T ss_dssp --CCCCEEECHHHHTTGGGCT--THHHHHHHHHTT-CEEEEHHHHHHHHHHSSSHHHHHHHHHSTTGG--GSCEECCCHH
T ss_pred hhcCCCEEEEHHHHHHHHcCH--HHHHHHHhccCC-CEEEccccHHHHhhhhhCchHHHHHHHhhccc--CCCeecCCHH
Confidence 455678999999999988553 445666665433 47899999999986311 12222222 22 34444422
Q ss_pred -------------CC----CCCHHHHHH-HHHhcCCeEEEEecCHHHHHHHhcCCCccEEEEe
Q 029148 134 -------------HK----GTYADDCLV-ERVTQHKCFIVATCDRDLKRRIRKVPGVPIMYIT 178 (198)
Q Consensus 134 -------------H~----g~~aDdCIv-~~v~~~~~yiVATnD~~LrrrLRkipGVPIiyi~ 178 (198)
.+ +...-||++ ..+..++ ..+.|+|+++.+- ..+.|.|+-.+.
T Consensus 90 ~a~~a~~i~~~l~~~G~~~~i~~~D~lIAAtA~~~g-l~LvT~d~dF~~i-~~~~~l~~~~~~ 150 (156)
T 3h87_A 90 IEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSG-LTVLHVDKDFDAI-AALTGQKTERLT 150 (156)
T ss_dssp HHHHHHHHHHHHHHTTCTTSSCHHHHHHHHHHHHHT-CEEEESCTHHHHH-HHHHCCCEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHCC-CEEEEeChhhhhh-hhcCCCceEEec
Confidence 11 224455554 5566677 4677999887654 444777766544
No 12
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=93.53 E-value=0.092 Score=42.38 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=37.0
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhh---hhHHHHHhc
Q 029148 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ---KYRVALRIA 122 (198)
Q Consensus 67 VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~---k~~~Al~ia 122 (198)
.++|||+|+.- +++...|.+ ..+..++||.-|+.||..|.. .+|.|+++.
T Consensus 5 lVlDTN~Li~~----l~~i~~l~~--~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~L 57 (164)
T 2hwy_A 5 LVPDTQALCHH----LPVIRQLAT--SGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYL 57 (164)
T ss_dssp EEECHHHHHHC----HHHHHHHHH--HSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred EEechHHHHhC----HHHHHHHHh--CCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHH
Confidence 57899999883 444455533 357899999999999999965 467777665
No 13
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=93.24 E-value=0.44 Score=34.58 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=56.6
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhc--ccceEeecHHHHHHHHHh-hhh--------hHHHHHh--ccCCCe--eeee
Q 029148 67 VLVDTNFINFSIQNKLDLEKGMMDCLY--AKCTPCITDCVMAELEKL-GQK--------YRVALRI--AKDPRF--ERLP 131 (198)
Q Consensus 67 VLvDtNFl~~~i~~kldl~~~L~~~L~--~k~~~~iT~CVi~ELekL-g~k--------~~~Al~i--ak~~r~--e~~~ 131 (198)
+++|||.++..+...-+ ....+.|. ..-.++|+.-++.|+... ... ....+.- .. .+ +.++
T Consensus 2 ~llDTnvli~~~~~~~~--~~~~~~l~~~~~~~~~is~~~~~El~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~il~ 77 (139)
T 2h1c_A 2 ILLDTNVISEPLRPQPN--ERVVAWLDSLILEDVYLSAITVAELRLGVALLLNGKKKNVLHERLEQSILP--LFAGRILP 77 (139)
T ss_dssp EEECHHHHTGGGSSSCC--HHHHHHHHHSCGGGEEEEHHHHHHHHHHHHTCSCHHHHHHHHHHHHHTTGG--GGTTCEEC
T ss_pred EeeehHHHHHHHcCCCC--HHHHHHHHhCCcccEEeeHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH--hccCCcCC
Confidence 68999999998875532 22333332 234689999999999863 221 1112211 12 23 3343
Q ss_pred cCC---------------CC--CC-HHHHHHHHHhcCCeEEEEecC-HHHHHHHhcCCCccEE
Q 029148 132 CTH---------------KG--TY-ADDCLVERVTQHKCFIVATCD-RDLKRRIRKVPGVPIM 175 (198)
Q Consensus 132 C~H---------------~g--~~-aDdCIv~~v~~~~~yiVATnD-~~LrrrLRkipGVPIi 175 (198)
.+. .| .. +|--|...+..+++ .+.|.| +++.+ + |++++
T Consensus 78 ~~~~~~~~a~~l~~~~~~~g~~~~~~D~liaA~A~~~~~-~lvT~d~~df~~----~-~l~~~ 134 (139)
T 2h1c_A 78 FDEPVAAIYAQIRSYAKTHGKEIAAADGYIAATAKQHSL-TVATRDTGSFFA----A-DVAVF 134 (139)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-EEECSCCHHHHH----T-TCCEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHcCC-eEEECCHHHHhh----C-CCeee
Confidence 321 11 23 44445566777786 899999 77753 3 77654
No 14
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=91.10 E-value=0.24 Score=38.38 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhh----h--hHHHHH---hccCCCeeeeec
Q 029148 62 GPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ----K--YRVALR---IAKDPRFERLPC 132 (198)
Q Consensus 62 ~~PY~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~----k--~~~Al~---iak~~r~e~~~C 132 (198)
.+|-++|+|||.++..++..-.. . .+ ..-.++|+.-++.||..--. . ....++ +.. .|+.++.
T Consensus 18 ~~~~~~LlDTnvlI~~l~g~~~~-~----~~-~~~~l~iS~It~~El~~G~~~~~~~~~~~~~l~~~~~l~--~~~ilp~ 89 (150)
T 3dbo_B 18 TTPAAGVLDTSVFIATESGRQLD-E----AL-IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA--DMETLPV 89 (150)
T ss_dssp --CCEEEECSGGGBC-----CCC-G----GG-SCSEEEEEHHHHHHHHHHHHHCSSHHHHHHHHHHHHTTT--TBCEECC
T ss_pred cccCEEEEeHHHHHHHHcCCcch-h----hc-CCCcEEEchhHHHHHHHHHHhCcchHHHHHHHHHHHHhh--CCeEecc
Confidence 46778999999999887755322 2 22 34578999999999865311 1 112222 222 4655553
Q ss_pred CC---------------CC--CCHHHH-HHHHHhcCCeEEEEecCHHHHHHHhcCCCccEE
Q 029148 133 TH---------------KG--TYADDC-LVERVTQHKCFIVATCDRDLKRRIRKVPGVPIM 175 (198)
Q Consensus 133 ~H---------------~g--~~aDdC-Iv~~v~~~~~yiVATnD~~LrrrLRkipGVPIi 175 (198)
+. .| ...-|| |...+..+++ .+.|+|+++. ++-.+-|.+++
T Consensus 90 d~~~a~~a~~l~~~l~~~G~~~~~~D~lIaA~A~~~~~-~LvT~d~dF~-~i~~l~~l~~~ 148 (150)
T 3dbo_B 90 DDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRAL-PVITQDDDFA-ALDGAASVEII 148 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHHHHHTTC-CEEESSSSGG-GGTTSTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHCCC-EEEECChhhh-hCCCccCceee
Confidence 31 11 123344 4566677774 7899997553 34444455554
No 15
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=80.00 E-value=7 Score=30.27 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhh-h----------hhHHHHH-hccCCCeeeeecCC
Q 029148 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG-Q----------KYRVALR-IAKDPRFERLPCTH 134 (198)
Q Consensus 67 VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg-~----------k~~~Al~-iak~~r~e~~~C~H 134 (198)
++||||.+...+.. .+ +.+.+...++++.-++.|+...- + ....++. +.. .++...-+.
T Consensus 30 ivvDTSvlv~~l~~----~~---~~l~~~~~~~ip~l~~~Ev~~vL~r~~r~~~l~~~~a~~~l~~ll~--~l~v~~~~~ 100 (158)
T 1v8p_A 30 YLVDASALYALAAH----YD---KWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLS--SFKVLEDPP 100 (158)
T ss_dssp EEECHHHHHHHTTC----HH---HHGGGGGGEEECHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH--TSEECCCCC
T ss_pred EEeeHHHHHHHHHh----hH---HHHhhcCCEEeHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--hCeEEeCcH
Confidence 89999999998743 22 23333456889999999986532 1 1222232 122 122222111
Q ss_pred ----------CCCCH-HHHHHHHHhcCCeEEEEecCHHHHHHHhc
Q 029148 135 ----------KGTYA-DDCLVERVTQHKCFIVATCDRDLKRRIRK 168 (198)
Q Consensus 135 ----------~g~~a-DdCIv~~v~~~~~yiVATnD~~LrrrLRk 168 (198)
.+-+. |-.++..+...++ -+.|.|+.|.+..++
T Consensus 101 ~~~A~~la~~~~Ls~yDA~~lAlA~~~g~-~L~T~D~~L~~~a~~ 144 (158)
T 1v8p_A 101 LDEVLRVAVERGLTFYDASYAYVAESSGL-VLVTQDRELLAKTKG 144 (158)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTTC-EEECSCHHHHHHSTT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCC-eEEeCCHHHHHHHHh
Confidence 01233 4445688888886 679999999998876
No 16
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=74.39 E-value=22 Score=35.53 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceEeecHHHHHHHHHhhhh-hHHHHHhccCC----CeeeeecC-C
Q 029148 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK-YRVALRIAKDP----RFERLPCT-H 134 (198)
Q Consensus 61 ~~~PY~VLvDtNFl~~~i~~kldl~~~L~~~L~~k~~~~iT~CVi~ELekLg~k-~~~Al~iak~~----r~e~~~C~-H 134 (198)
+..+..+++|||.++..+ |+.+.= . .-..++|++-|++|+..-+.. |..--.+.+++ +|-...=+ |
T Consensus 58 ~~~~~~~i~d~~v~l~~~----d~le~~-~---~~~~vii~qtv~~~v~~~~~~~y~rl~~l~~~~~~~~~~~vF~ne~~ 129 (977)
T 2wp8_J 58 PIGKHYVVLDTNVVLQAI----DLLENP-N---CFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFS 129 (977)
T ss_dssp TTSBEEEEECHHHHHHHH----HHHTCT-T---TCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCCSSCEEEEECTTTB
T ss_pred CCCCeEEEecHHHHHHHH----HHhhcc-c---ccCCEEEEHHHHHHHHhcCHHHHHHHHHHhcCcCcCceEEEEccccc
Confidence 457788999999998864 444331 1 224589999999999987653 55444455542 34333211 2
Q ss_pred CCCC------------HHHHHHHHHh---cC-----CeEEEEecCHHHHHHHhcC--CCccEEEEeC
Q 029148 135 KGTY------------ADDCLVERVT---QH-----KCFIVATCDRDLKRRIRKV--PGVPIMYITR 179 (198)
Q Consensus 135 ~g~~------------aDdCIv~~v~---~~-----~~yiVATnD~~LrrrLRki--pGVPIiyi~~ 179 (198)
..|| .|.+|...+. +| -..++.|+|++-+++.+.. .|++++++..
T Consensus 130 ~~t~~~~~~~es~~~r~~r~i~~~~~wy~~hl~~~~~~vv~~t~d~~~~~~~~~~~~~~~~~~s~~~ 196 (977)
T 2wp8_J 130 EHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQ 196 (977)
T ss_dssp TTTCCC-------CCHHHHHHHHHHHHHHHHHGGGTCEEEEEECC-----------CCCSCEEEHHH
T ss_pred hhhcccCccCCChhhhhHHHHHHHHHHHHHhccccCCCEEEEeCCHHHHHHHhhhccCCcEEEEHHH
Confidence 2332 4567766553 21 2379999999999888873 6999988764
No 17
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=37.24 E-value=45 Score=26.89 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCCeEEEEecCH---------HHHHHHhcCCCccEEEEeCceE
Q 029148 137 TYADDCLVERVTQHKCFIVATCDR---------DLKRRIRKVPGVPIMYITRHKY 182 (198)
Q Consensus 137 ~~aDdCIv~~v~~~~~yiVATnD~---------~LrrrLRkipGVPIiyi~~~~~ 182 (198)
.|+|.=|+++|.+.+. +|.|||+ ++++.+++ -=++--|+ ++.+
T Consensus 112 ~ydD~~il~~A~~~~g-~IVSND~~rD~~~~~p~~k~~Ie~-rli~ytFv-~d~F 163 (185)
T 3v32_B 112 CYDDRFIVKLAYESDG-IVVSNDTYRDLQGERQEWKRFIEE-RLLMYSFV-NDKF 163 (185)
T ss_dssp CCHHHHHHHHHHHTTC-EEECSCCCHHHHHHCHHHHHHHHH-HEECCEEE-TTEE
T ss_pred CccHHHHHHHHHHcCC-EEEeCccHHHHHhhCHHHHHHHHh-CcceeEEE-CCEE
Confidence 4788889999998875 7888996 66666654 23444444 4433
No 18
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=36.52 E-value=15 Score=32.11 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHhc----CCeEEEEecCHHHHHHHhcCCCccEEEEeCceEEEec
Q 029148 135 KGTYADDCLVERVTQ----HKCFIVATCDRDLKRRIRKVPGVPIMYITRHKYSIER 186 (198)
Q Consensus 135 ~g~~aDdCIv~~v~~----~~~yiVATnD~~LrrrLRkipGVPIiyi~~~~~~lE~ 186 (198)
.|--|||+|-.++++ ....+|+|.|+||.+-+.+ +||-++.......+.|.
T Consensus 127 ~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~-~~V~~~~~~~~~~V~ek 181 (305)
T 3h7i_A 127 DKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKY-PNVKQWSPMHKKWVKIK 181 (305)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGS-SSEEEEETTTTEEECSS
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccC-CCeEEEecCCHHHHHHH
Confidence 455799999877753 2357999999999998875 68877765555555554
No 19
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=28.51 E-value=35 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=24.1
Q ss_pred EEEEecCHHHHHHHhcC----CCccEEEEeCceEEEe
Q 029148 153 FIVATCDRDLKRRIRKV----PGVPIMYITRHKYSIE 185 (198)
Q Consensus 153 yiVATnD~~LrrrLRki----pGVPIiyi~~~~~~lE 185 (198)
++=.+.|.+.++.++++ ..||+|++..+.+..+
T Consensus 33 ~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~ 69 (92)
T 2lqo_A 33 EVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTN 69 (92)
T ss_dssp EEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEES
T ss_pred EEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeC
Confidence 45567888888888753 3499999987765554
No 20
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=26.19 E-value=97 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhcCCeEEEEecCHHHHHHHhcCCCccEEE
Q 029148 138 YADDCLVERVTQHKCFIVATCDRDLKRRIRKVPGVPIMY 176 (198)
Q Consensus 138 ~aDdCIv~~v~~~~~yiVATnD~~LrrrLRkipGVPIiy 176 (198)
-||+.|..++.+...++|+|.|.|+-.- |.|.++
T Consensus 157 EADd~ia~La~~g~v~~i~s~D~D~l~~-----~~~~v~ 190 (341)
T 3q8k_A 157 EAEASCAALVKAGKVYAAATEDMDCLTF-----GSPVLM 190 (341)
T ss_dssp CHHHHHHHHHHTTSSSEEECSCTHHHHT-----TCSEEE
T ss_pred cHHHHHHHHHhcCCeEEEEcCCcccccc-----CCcEEE
Confidence 7999999999887777899999998764 455554
No 21
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=25.76 E-value=27 Score=18.39 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=9.6
Q ss_pred CCccEEEEeCce
Q 029148 170 PGVPIMYITRHK 181 (198)
Q Consensus 170 pGVPIiyi~~~~ 181 (198)
..|||||.+++.
T Consensus 4 kpvpiiycnrrt 15 (21)
T 8tfv_A 4 KPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCEEEEGGG
T ss_pred CcccEEEEcCcc
Confidence 469999999863
No 22
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=25.42 E-value=47 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=19.0
Q ss_pred EEEecCHHHHHHHhc---CCCccEEEEeCce
Q 029148 154 IVATCDRDLKRRIRK---VPGVPIMYITRHK 181 (198)
Q Consensus 154 iVATnD~~LrrrLRk---ipGVPIiyi~~~~ 181 (198)
+=.+.|.+++..|.+ .++||++|+.+..
T Consensus 50 vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~ 80 (109)
T 1wik_A 50 FDILEDEEVRQGLKTFSNWPTYPQLYVRGDL 80 (109)
T ss_dssp EESSSCHHHHHHHHHHHSCCSSCEEECSSSE
T ss_pred EECCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 334556777766653 4789999987753
No 23
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=23.86 E-value=35 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.129 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhcCCeEEEEecCHHHHHH
Q 029148 138 YADDCLVERVTQHKCFIVATCDRDLKRR 165 (198)
Q Consensus 138 ~aDdCIv~~v~~~~~yiVATnD~~Lrrr 165 (198)
.||+.|..++.....+.|+|+|.||-.-
T Consensus 157 EADd~iA~La~~g~~~~iiS~D~Dll~~ 184 (379)
T 1ul1_X 157 EAEASCAALVKAGKVYAAATEDMDCLTF 184 (379)
T ss_dssp CHHHHHHHHHHHTSSSEEECSCTHHHHT
T ss_pred cHHHHHHHHHhcCCeEEEEecCcCcccc
Confidence 7999999999887778899999998764
No 24
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=22.35 E-value=47 Score=28.48 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhc----CCeEEEEecCHHHHHHHhcCCCccE
Q 029148 136 GTYADDCLVERVTQ----HKCFIVATCDRDLKRRIRKVPGVPI 174 (198)
Q Consensus 136 g~~aDdCIv~~v~~----~~~yiVATnD~~LrrrLRkipGVPI 174 (198)
|--|||+|-.++.+ ....+|+|.|+||..-.. |+|-+
T Consensus 125 g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~--~~v~v 165 (290)
T 1exn_A 125 GVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLT--DKVSR 165 (290)
T ss_dssp TBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCC--SSEEE
T ss_pred CcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCC--CCEEE
Confidence 44799999998864 335789999999987663 45533
No 25
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.34 E-value=61 Score=22.25 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEecCHHHHHHHh---cCCCccEEEEeCc
Q 029148 153 FIVATCDRDLKRRIR---KVPGVPIMYITRH 180 (198)
Q Consensus 153 yiVATnD~~LrrrLR---kipGVPIiyi~~~ 180 (198)
++=.+.|.+++..+. .+++||.+++.+.
T Consensus 51 ~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~ 81 (105)
T 2yan_A 51 TFDILEDEEVRQGLKAYSNWPTYPQLYVKGE 81 (105)
T ss_dssp EEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence 455566777766654 3589999988654
No 26
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.47 E-value=63 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=19.1
Q ss_pred EEEecCHHHHHHHhcC-----------CCccEEEEeCce
Q 029148 154 IVATCDRDLKRRIRKV-----------PGVPIMYITRHK 181 (198)
Q Consensus 154 iVATnD~~LrrrLRki-----------pGVPIiyi~~~~ 181 (198)
+=.+.|.+++..|++. +.||.||+.+..
T Consensus 44 vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~ 82 (111)
T 2ct6_A 44 VDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY 82 (111)
T ss_dssp EETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE
T ss_pred EECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEE
Confidence 3345577777777654 359999998653
No 27
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.77 E-value=51 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=17.1
Q ss_pred EEEecCHHHHHHHhcC-----CCccEEEEeCc
Q 029148 154 IVATCDRDLKRRIRKV-----PGVPIMYITRH 180 (198)
Q Consensus 154 iVATnD~~LrrrLRki-----pGVPIiyi~~~ 180 (198)
+=.+.|.+++..+++. ..||.+++.+.
T Consensus 38 ~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~ 69 (93)
T 1t1v_A 38 VDISQDNALRDEMRTLAGNPKATPPQIVNGNH 69 (93)
T ss_dssp EETTSCHHHHHHHHHHTTCTTCCSCEEEETTE
T ss_pred EECCCCHHHHHHHHHHhCCCCCCCCEEEECCE
Confidence 3334566666655532 37999999765
No 28
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=20.62 E-value=1.5e+02 Score=20.33 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEecCHHHHHHHh----cCCCccEEEEeCc
Q 029148 153 FIVATCDRDLKRRIR----KVPGVPIMYITRH 180 (198)
Q Consensus 153 yiVATnD~~LrrrLR----kipGVPIiyi~~~ 180 (198)
++=.+.|.+++..+. ...+||++++.+.
T Consensus 45 ~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~ 76 (99)
T 3qmx_A 45 EYCIDGDNEAREAMAARANGKRSLPQIFIDDQ 76 (99)
T ss_dssp EEECTTCHHHHHHHHHHTTTCCCSCEEEETTE
T ss_pred EEEcCCCHHHHHHHHHHhCCCCCCCEEEECCE
Confidence 455667777777774 3478999988664
No 29
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=20.48 E-value=1.1e+02 Score=21.76 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=29.0
Q ss_pred cCHHHHHHHhcCCCccEEEEeCceEEEecCCCc
Q 029148 158 CDRDLKRRIRKVPGVPIMYITRHKYSIERLPEA 190 (198)
Q Consensus 158 nD~~LrrrLRkipGVPIiyi~~~~~~lE~~s~~ 190 (198)
....|-++|-.||||--+|+..+-+.+++-+++
T Consensus 37 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~ 69 (91)
T 1pqx_A 37 SQPAFINDILKVEGVKSIFHVMDFISVDKENDA 69 (91)
T ss_dssp SCCHHHHHHHHSTTEEEEEEETTEEEEEECTTS
T ss_pred cCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCC
Confidence 456799999999999999999999999996654
No 30
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=20.27 E-value=3.1e+02 Score=21.39 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=53.6
Q ss_pred eecHHHHHHHHHhh---hhhHHHHHhcc-CCCeeeeecCCCCCC-----HHHHHHHHHhcCCeEEEEecCHHHHHHHhc-
Q 029148 99 CITDCVMAELEKLG---QKYRVALRIAK-DPRFERLPCTHKGTY-----ADDCLVERVTQHKCFIVATCDRDLKRRIRK- 168 (198)
Q Consensus 99 ~iT~CVi~ELekLg---~k~~~Al~iak-~~r~e~~~C~H~g~~-----aDdCIv~~v~~~~~yiVATnD~~LrrrLRk- 168 (198)
.|.+..++||.+|. +.+...|..++ ...+. +..+-+... .-+-+++.+.+.+..+|.+-|.+.-+++|+
T Consensus 63 ~v~~~t~~eL~~l~~~iptL~evl~~~~~~~~~~-l~iEiK~~~~~~~~~~~~v~~~l~~~~~v~i~Sf~~~~l~~~~~~ 141 (224)
T 1vd6_A 63 PVFQVDYADLKAQEPDLPRLEEVLALKEAFPQAV-FNVELKSFPGLGEEAARRLAALLRGREGVWVSSFDPLALLALRKA 141 (224)
T ss_dssp EGGGSCHHHHHHHSTTCCBHHHHHGGGGTCTTCE-EEEEECCCTTSHHHHHHHHHHHTTTCSSEEEEESCHHHHHHHHHH
T ss_pred ChhhCCHHHHHhcCCCCCCHHHHHHhhhccCCce-EEEEECCCCCccHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Confidence 36777888998874 34677888776 32221 122223221 234466666655567999999999888986
Q ss_pred CCCccEEEEeCc
Q 029148 169 VPGVPIMYITRH 180 (198)
Q Consensus 169 ipGVPIiyi~~~ 180 (198)
.|++|+.++...
T Consensus 142 ~p~~~~~~l~~~ 153 (224)
T 1vd6_A 142 APGLPLGFLMAE 153 (224)
T ss_dssp CTTSCEEEEESS
T ss_pred CCCCCEEEEecc
Confidence 699999988764
Done!