BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029149
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 271 bits (692), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 142/150 (94%)
Query: 36 FVPPFNFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLF 95
+PP NF+ VDNGIFRSGFPDSANFSFL++LGLRS+IYLCPEPYP+SNL+FLK+NGI+LF
Sbjct: 2 LIPPLNFSXVDNGIFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLF 61
Query: 96 QFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCL 155
QFGI+G KEPFVNIP+ IR ALKV+LDE+NHP+LIHCKRGKHRTGCLVGCLRKLQKWCL
Sbjct: 62 QFGIEGNKEPFVNIPDHKIRXALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCL 121
Query: 156 SSIFDEYQRFAAAKARLSDQRFIELFDISS 185
+SIFDEYQRFAAAKAR+SDQRF E+FD+SS
Sbjct: 122 TSIFDEYQRFAAAKARVSDQRFXEIFDVSS 151
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 48 GIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFV 107
G++R+ D F K + LC E + D+ K N ++ Q+ + P +
Sbjct: 38 GVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDT----AKFN-CRVAQYPFEDHNPPQL 92
Query: 108 NIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLV 144
+ + + + + ++ NH IHCK GK RTG ++
Sbjct: 93 ELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMI 129
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 126 NHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDISS 185
NHP+ +HC G RTG + L++ + D +Q A RL ++ +
Sbjct: 518 NHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQ--AVKSLRLQRPHMVQTLEQYE 575
Query: 186 F 186
F
Sbjct: 576 F 576
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 32.7 bits (73), Expect = 0.13, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 109 IPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAA- 167
+P++ E K ++ PLLIHC+ G +TG L L+ + D +Q A
Sbjct: 525 LPQKNSSEGNK---HHKSTPLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKAL 581
Query: 168 AKARL 172
KARL
Sbjct: 582 RKARL 586
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 93 QLFQFGIDGCKEPFVNIPEE------TIREALKVVLDERNHPLLIHCKRGKHRTGCLVGC 146
Q+ QF G P V IP + I K NHP+ +HC G RTG
Sbjct: 139 QIRQFHFHGW--PEVGIPSDGKGMINIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCAL 196
Query: 147 LRKLQKWCLSSIFDEYQ 163
L++ I D +Q
Sbjct: 197 STVLERVKAEGILDVFQ 213
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLV 144
N+P T+ + LK + D + +H + IHCK GK RTG LV
Sbjct: 91 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHCKAGKGRTGTLV 132
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFD 160
N+P T+ + LK + D + +H + IHCK GK RTG LV W L
Sbjct: 81 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLV------SSWLL----- 127
Query: 161 EYQRFAAAKARL 172
E +F AK L
Sbjct: 128 EDGKFDTAKEAL 139
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFD 160
N+P T+ + LK + D + +H + IHCK GK RTG LV W L
Sbjct: 91 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLV------SSWLL----- 137
Query: 161 EYQRFAAAKARL 172
E +F AK L
Sbjct: 138 EDGKFDTAKEAL 149
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLV 144
N+P T+ + LK + D + +H + IHCK GK RTG LV
Sbjct: 103 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLV 144
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 123 DERNHPLLIHCKRGKHRTGCLV 144
D+RN P+L+HC G +R+G +
Sbjct: 122 DQRNEPVLVHCAAGVNRSGAXI 143
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 123 DERNHPLLIHCKRGKHRTGCLV 144
D+RN P+L+HC G +R+G +
Sbjct: 101 DQRNEPVLVHCVAGVNRSGAXI 122
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDIS 184
R+ P+++HC G RTG L+ L +L +CL +E L +QR + I+
Sbjct: 251 RHPPIVVHCSAGVGRTGVLI--LSELMIYCLEH--NEKVEVPMMLRLLREQRMFMIQTIA 306
Query: 185 SFK 187
+K
Sbjct: 307 QYK 309
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 123 DERNHPLLIHCKRGKHRTGCLV 144
D+RN P+L+H G +R+G ++
Sbjct: 105 DQRNEPVLVHSAAGVNRSGAMI 126
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 128 PLLIHCKRGKHRTGCLVGCLRKL 150
P+L+HC G RTG L+G L
Sbjct: 224 PILVHCSAGIGRTGTLIGAYAAL 246
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 79 YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138
+ ++N F K +GI + +E ++ E + + L ++N +L+HC+ G
Sbjct: 69 HVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYS 128
Query: 139 RTGCLV 144
R+ LV
Sbjct: 129 RSPTLV 134
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 79 YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138
+ ++N F K +GI + +E ++ E + + L ++N +L+HC+ G
Sbjct: 68 HVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYS 127
Query: 139 RTGCLV 144
R+ LV
Sbjct: 128 RSPTLV 133
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 114 IREALKVVLDERNH--PLLIHCKRGKHRTGCLVG---CLRKLQK 152
+RE + E H P+++HC G RTGC + C ++L++
Sbjct: 217 VREVEEAAQQEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQ 260
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 58 ANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGI-DGCK------EPFVNIP 110
A++ FL LG+R ++ L P S+ G+ L + I D C + FV I
Sbjct: 26 AHYQFLLDLGVRHLVSLTERGPPHSD----SCPGLTLHRLRIPDFCPPAPDQIDRFVQIV 81
Query: 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGC 146
+E + R + +HC G RTG ++ C
Sbjct: 82 DEA---------NARGEAVGVHCALGFGRTGTMLAC 108
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 128 PLLIHCKRGKHRTGCLVG---CLRKLQKWCL--SSIFD 160
P+++HC G RTG L+G L L++ L ++++D
Sbjct: 221 PVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYD 258
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 128 PLLIHCKRGKHRTGCLVGCLRKLQ 151
P++IHC G RTG + R LQ
Sbjct: 220 PMIIHCSAGVGRTGTFIALDRLLQ 243
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 128 PLLIHCKRGKHRTGCLVGCLRKLQ 151
P++IHC G RTG + R LQ
Sbjct: 218 PMIIHCSAGVGRTGTFIALDRLLQ 241
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 128 PLLIHCKRGKHRTGCLV 144
PL++HC G RTGC +
Sbjct: 212 PLVVHCSAGAGRTGCFI 228
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 20/72 (27%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFD 160
N+P T+ + LK + D + +H + IH K GK RTG LV W L
Sbjct: 81 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLV------SSWLL----- 127
Query: 161 EYQRFAAAKARL 172
E +F AK L
Sbjct: 128 EDGKFDTAKEAL 139
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 20/72 (27%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFD 160
N+P T+ + LK + D + +H + IH K GK RTG LV W L
Sbjct: 96 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSS------WLL----- 142
Query: 161 EYQRFAAAKARL 172
E +F AK L
Sbjct: 143 EDGKFDTAKEAL 154
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 128 PLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKAR 171
P+++HC G RTGC + L++ D Y +A+
Sbjct: 220 PMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQ 263
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 35 LFVPPFNFAIVDNGIFRS-GFPD-SANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGI 92
L V P NF+ V G P A++ FL LG+R ++ L P S+ G+
Sbjct: 2 LGVQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSD----SCPGL 57
Query: 93 QLFQFGI-DGCK------EPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVG 145
L + I D C + FV I +E + R + +HC G RTG +
Sbjct: 58 TLHRLRIPDFCPPAPDQIDRFVQIVDEA---------NARGEAVGVHCALGFGRTGTXLA 108
Query: 146 C 146
C
Sbjct: 109 C 109
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 20/72 (27%)
Query: 108 NIPEETIREALKVVLDER-------NHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFD 160
N+P T+ + LK + D + +H + IH K GK RTG LV W L
Sbjct: 96 NVP--TLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSS------WLL----- 142
Query: 161 EYQRFAAAKARL 172
E +F AK L
Sbjct: 143 EDGKFDTAKEAL 154
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 128 PLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKAR 171
P+++HC G RTGC + L + D Y A ++R
Sbjct: 236 PIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCVKALRSR 279
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 128 PLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEY 162
P+++HC G RTGC + L++ D Y
Sbjct: 225 PIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVY 259
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 106 FVNIPEETIREALKVVLDERN 126
F N+PE+ REALKVV ERN
Sbjct: 14 FQNVPEDAXREALKVV-TERN 33
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 128 PLLIHCKRGKHRTGCLV 144
P+++HC G RTGC +
Sbjct: 223 PIVVHCSAGVGRTGCFI 239
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 128 PLLIHCKRGKHRTGCLVG 145
P+++HC G RTGC +
Sbjct: 214 PIVVHCSAGAGRTGCFIA 231
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 108 NIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGC 146
+ P + I + + + + +HCK G RTG L+ C
Sbjct: 251 STPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIAC 289
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 128 PLLIHCKRGKHRTGCLVG---CLRKLQKWCLSSIFDEYQRFAAAKA 170
P+++HC G RTG CL +L++ ++F R +A
Sbjct: 235 PIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRA 280
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 128 PLLIHCKRGKHRTGCLV 144
P+++HC G RTGC +
Sbjct: 211 PMVVHCSAGVGRTGCFI 227
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 75 CPEP--YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH 127
PEP Y D + + + + +FG +G + P E ++ LK+ LD+ H
Sbjct: 185 SPEPLHYDDGSGMWACPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKH 239
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 128 PLLIHCKRGKHRTGCLVGC 146
P+++HC G RTGC +
Sbjct: 235 PIVVHCSAGIGRTGCFIAT 253
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 128 PLLIHCKRGKHRTGCLVGC 146
P+++HC G RTGC +
Sbjct: 235 PIVVHCSAGIGRTGCFIAT 253
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 128 PLLIHCKRGKHRTGCLVGC 146
P+++HC G RTGC +
Sbjct: 235 PIVVHCSAGIGRTGCFIAT 253
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 128 PLLIHCKRGKHRTGCLVG 145
P+++HC G RTGC +
Sbjct: 224 PIVVHCSAGIGRTGCFIA 241
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 128 PLLIHCKRGKHRTGCLVGC 146
P+++HC G RTGC +
Sbjct: 234 PIVVHCSAGIGRTGCFIAT 252
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 128 PLLIHCKRGKHRTGCLVG 145
P+++HC G RTGC +
Sbjct: 224 PVVVHCSAGIGRTGCFIA 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,164,337
Number of Sequences: 62578
Number of extensions: 256902
Number of successful extensions: 521
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 52
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)