Query 029149
Match_columns 198
No_of_seqs 115 out of 1210
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03162 Y_phosphatase2: Tyros 100.0 2.5E-40 5.4E-45 264.3 12.2 153 36-188 1-153 (164)
2 KOG1572 Predicted protein tyro 100.0 1.1E-32 2.3E-37 228.0 15.6 167 31-197 49-219 (249)
3 TIGR01244 conserved hypothetic 99.9 4.8E-23 1E-27 159.6 13.7 120 42-168 2-127 (135)
4 smart00195 DSPc Dual specifici 99.9 1.2E-22 2.7E-27 156.2 13.3 128 43-181 2-132 (138)
5 PF13350 Y_phosphatase3: Tyros 99.9 4.3E-23 9.4E-28 164.1 9.0 121 44-166 15-164 (164)
6 cd00127 DSPc Dual specificity 99.9 7.3E-22 1.6E-26 151.2 12.8 131 42-181 2-135 (139)
7 PTZ00242 protein tyrosine phos 99.8 5.8E-20 1.3E-24 147.1 15.3 136 41-183 10-156 (166)
8 PF04273 DUF442: Putative phos 99.8 1.4E-20 3.1E-25 141.1 10.7 101 42-149 2-108 (110)
9 PTZ00393 protein tyrosine phos 99.8 2.3E-19 4.9E-24 150.2 15.5 134 49-189 94-233 (241)
10 PF00782 DSPc: Dual specificit 99.8 2.2E-19 4.8E-24 136.9 10.4 124 49-180 1-126 (133)
11 PRK12361 hypothetical protein; 99.8 2.6E-18 5.6E-23 159.8 14.6 137 41-183 94-235 (547)
12 PLN02727 NAD kinase 99.8 1.7E-18 3.8E-23 165.7 11.8 102 48-153 262-369 (986)
13 COG3453 Uncharacterized protei 99.8 2.1E-17 4.5E-22 124.2 12.5 115 41-162 2-122 (130)
14 KOG1720 Protein tyrosine phosp 99.7 8.7E-16 1.9E-20 125.6 13.1 127 37-170 48-192 (225)
15 COG2365 Protein tyrosine/serin 99.7 1.2E-16 2.7E-21 135.5 7.8 147 39-189 44-201 (249)
16 PF05706 CDKN3: Cyclin-depende 99.6 7.1E-16 1.5E-20 122.7 9.5 107 49-159 43-168 (168)
17 KOG1719 Dual specificity phosp 99.6 4E-15 8.6E-20 116.7 11.6 124 41-168 24-152 (183)
18 KOG1718 Dual specificity phosp 99.6 8.7E-15 1.9E-19 116.2 13.0 134 38-179 13-150 (198)
19 KOG1716 Dual specificity phosp 99.6 1.3E-14 2.9E-19 125.1 12.3 137 39-183 72-211 (285)
20 KOG1717 Dual specificity phosp 99.4 6.7E-13 1.5E-17 112.3 10.0 117 44-168 174-294 (343)
21 COG2453 CDC14 Predicted protei 99.4 4.1E-12 8.9E-17 102.8 10.2 77 87-167 68-148 (180)
22 KOG2836 Protein tyrosine phosp 99.3 1.9E-11 4.1E-16 94.2 11.9 134 49-189 19-161 (173)
23 smart00012 PTPc_DSPc Protein t 99.0 2.4E-09 5.2E-14 77.1 7.1 82 93-178 4-97 (105)
24 smart00404 PTPc_motif Protein 99.0 2.4E-09 5.2E-14 77.1 7.1 82 93-178 4-97 (105)
25 PF14566 PTPlike_phytase: Inos 98.9 1.1E-08 2.3E-13 80.5 7.9 65 82-150 83-148 (149)
26 cd00047 PTPc Protein tyrosine 98.6 2.5E-07 5.4E-12 76.8 8.6 65 112-177 148-222 (231)
27 KOG2386 mRNA capping enzyme, g 98.6 1.6E-07 3.4E-12 84.1 7.7 133 59-195 53-192 (393)
28 KOG2283 Clathrin coat dissocia 98.5 3.6E-07 7.8E-12 83.2 8.2 135 41-184 14-173 (434)
29 smart00194 PTPc Protein tyrosi 98.5 6.7E-07 1.5E-11 75.5 8.7 67 111-178 175-250 (258)
30 PRK15375 pathogenicity island 98.4 1.2E-06 2.6E-11 80.6 9.8 55 129-183 469-525 (535)
31 PHA02740 protein tyrosine phos 98.2 1.1E-05 2.3E-10 70.4 10.5 55 126-181 221-281 (298)
32 PHA02742 protein tyrosine phos 98.2 9.3E-06 2E-10 70.8 9.9 55 126-181 229-289 (303)
33 PHA02747 protein tyrosine phos 98.1 2.1E-05 4.5E-10 68.9 9.1 52 127-179 230-287 (312)
34 PHA02746 protein tyrosine phos 98.0 2.5E-05 5.4E-10 68.8 8.8 54 127-181 248-307 (323)
35 PF00102 Y_phosphatase: Protei 98.0 2.2E-05 4.7E-10 64.3 7.3 67 111-178 152-227 (235)
36 PHA02738 hypothetical protein; 98.0 4.4E-05 9.6E-10 67.1 9.2 51 126-177 227-283 (320)
37 KOG0792 Protein tyrosine phosp 97.9 2.9E-05 6.2E-10 76.3 8.1 77 100-179 1037-1123(1144)
38 COG5599 PTP2 Protein tyrosine 97.9 2.2E-05 4.9E-10 66.9 5.4 72 112-183 202-289 (302)
39 COG5350 Predicted protein tyro 97.7 0.00056 1.2E-08 54.1 10.4 118 62-184 27-151 (172)
40 KOG0791 Protein tyrosine phosp 97.6 0.00026 5.6E-09 62.8 7.5 83 97-183 258-349 (374)
41 KOG0790 Protein tyrosine phosp 97.4 0.00018 3.8E-09 65.4 4.4 53 93-148 416-473 (600)
42 KOG0789 Protein tyrosine phosp 97.2 0.0016 3.5E-08 58.2 8.5 54 125-179 298-358 (415)
43 KOG4228 Protein tyrosine phosp 97.0 0.0007 1.5E-08 67.2 4.2 82 99-183 703-792 (1087)
44 cd01518 RHOD_YceA Member of th 95.9 0.046 9.9E-07 39.2 7.2 29 124-154 59-87 (101)
45 KOG0793 Protein tyrosine phosp 95.8 0.018 3.9E-07 55.2 5.7 52 126-177 927-984 (1004)
46 cd01448 TST_Repeat_1 Thiosulfa 95.7 0.12 2.7E-06 38.1 9.1 84 69-154 16-106 (122)
47 cd01533 4RHOD_Repeat_2 Member 95.5 0.068 1.5E-06 38.9 6.8 41 112-154 52-92 (109)
48 PLN02160 thiosulfate sulfurtra 95.0 0.11 2.4E-06 40.0 7.0 99 57-168 19-125 (136)
49 cd01523 RHOD_Lact_B Member of 94.3 0.36 7.8E-06 34.3 7.9 28 125-154 60-87 (100)
50 PRK01415 hypothetical protein; 94.2 0.21 4.6E-06 42.5 7.4 28 125-154 170-197 (247)
51 KOG4471 Phosphatidylinositol 3 94.1 0.067 1.5E-06 50.5 4.3 26 124-149 372-397 (717)
52 PF04343 DUF488: Protein of un 94.0 0.25 5.4E-06 37.1 6.8 40 60-99 6-52 (122)
53 COG0607 PspE Rhodanese-related 93.6 0.41 8.8E-06 34.2 7.0 76 61-156 13-89 (110)
54 cd01519 RHOD_HSP67B2 Member of 93.2 0.38 8.3E-06 34.3 6.3 76 69-154 16-92 (106)
55 PF06602 Myotub-related: Myotu 93.0 0.19 4.1E-06 44.9 5.4 27 124-150 229-255 (353)
56 PF04179 Init_tRNA_PT: Initiat 92.6 0.62 1.3E-05 43.1 8.2 100 45-149 292-399 (451)
57 PF00581 Rhodanese: Rhodanese- 92.5 1.6 3.5E-05 30.9 8.9 82 58-146 3-86 (113)
58 PRK00142 putative rhodanese-re 91.8 0.77 1.7E-05 40.4 7.6 28 125-154 170-197 (314)
59 smart00450 RHOD Rhodanese Homo 91.5 1.5 3.2E-05 30.0 7.4 30 124-155 54-83 (100)
60 cd01528 RHOD_2 Member of the R 91.3 0.92 2E-05 32.3 6.4 40 113-154 44-84 (101)
61 KOG1530 Rhodanese-related sulf 90.9 1.2 2.5E-05 34.5 6.8 76 60-144 30-106 (136)
62 cd01534 4RHOD_Repeat_3 Member 90.8 0.9 1.9E-05 32.0 5.8 28 125-154 55-82 (95)
63 KOG1089 Myotubularin-related p 90.5 0.38 8.3E-06 45.4 4.6 29 123-151 341-369 (573)
64 KOG4228 Protein tyrosine phosp 90.4 0.31 6.8E-06 49.0 4.0 43 126-168 1018-1066(1087)
65 cd01526 RHOD_ThiF Member of th 90.0 1.4 3.1E-05 32.6 6.6 27 125-153 71-97 (122)
66 TIGR02990 ectoine_eutA ectoine 89.4 1.4 3.1E-05 37.2 6.8 92 59-153 111-207 (239)
67 PRK05600 thiamine biosynthesis 88.6 1.3 2.7E-05 39.9 6.3 27 126-154 332-358 (370)
68 cd01527 RHOD_YgaP Member of th 87.9 3.6 7.7E-05 28.9 7.2 28 125-154 53-80 (99)
69 PRK00162 glpE thiosulfate sulf 87.7 2.5 5.5E-05 30.4 6.4 39 112-154 46-84 (108)
70 cd01522 RHOD_1 Member of the R 87.6 4.8 0.0001 29.7 7.9 28 125-154 63-90 (117)
71 PF02126 PTE: Phosphotriestera 87.2 0.42 9.1E-06 42.0 2.3 99 59-158 43-186 (308)
72 PRK09875 putative hydrolase; P 87.1 2.9 6.3E-05 36.4 7.5 38 59-96 39-79 (292)
73 TIGR02981 phageshock_pspE phag 86.9 1.9 4.1E-05 31.4 5.3 41 112-154 44-84 (101)
74 cd01449 TST_Repeat_2 Thiosulfa 86.8 1.1 2.4E-05 32.5 4.1 42 111-154 63-104 (118)
75 COG1735 Php Predicted metal-de 85.1 6.3 0.00014 34.7 8.4 33 124-158 163-195 (316)
76 PF14671 DSPn: Dual specificit 84.6 2 4.4E-05 33.5 4.7 40 126-165 66-110 (141)
77 cd01443 Cdc25_Acr2p Cdc25 enzy 83.9 5.2 0.00011 29.1 6.5 20 125-144 65-84 (113)
78 cd01524 RHOD_Pyr_redox Member 83.4 5.2 0.00011 27.7 6.1 27 125-153 50-76 (90)
79 COG3473 Maleate cis-trans isom 82.9 5.8 0.00012 33.3 6.9 93 58-153 108-205 (238)
80 TIGR03865 PQQ_CXXCW PQQ-depend 81.9 17 0.00038 28.5 9.2 29 125-154 115-143 (162)
81 PRK10287 thiosulfate:cyanide s 81.3 4.8 0.0001 29.5 5.4 42 112-155 46-87 (104)
82 PRK05320 rhodanese superfamily 81.1 3.6 7.8E-05 35.1 5.3 28 125-154 174-201 (257)
83 PRK11784 tRNA 2-selenouridine 80.8 8.8 0.00019 34.2 7.9 29 125-154 87-115 (345)
84 PRK15378 inositol phosphate ph 79.3 1.7 3.8E-05 40.4 2.9 19 130-148 460-478 (564)
85 PF02571 CbiJ: Precorrin-6x re 78.7 4 8.6E-05 34.7 4.8 82 50-131 47-135 (249)
86 cd01530 Cdc25 Cdc25 phosphatas 77.6 2.7 5.8E-05 31.4 3.1 23 125-148 67-90 (121)
87 cd03174 DRE_TIM_metallolyase D 74.3 21 0.00045 29.6 8.0 81 60-148 121-209 (265)
88 PRK08762 molybdopterin biosynt 74.1 8.5 0.00019 34.4 5.9 40 113-154 44-83 (376)
89 TIGR02571 ComEB ComE operon pr 74.0 9.7 0.00021 29.9 5.5 52 49-100 90-141 (151)
90 cd07943 DRE_TIM_HOA 4-hydroxy- 73.4 20 0.00044 30.3 7.8 81 60-148 118-204 (263)
91 PRK11493 sseA 3-mercaptopyruva 73.2 28 0.0006 29.7 8.6 43 111-154 72-114 (281)
92 cd01531 Acr2p Eukaryotic arsen 72.7 13 0.00029 26.8 5.8 23 125-147 61-83 (113)
93 TIGR03167 tRNA_sel_U_synt tRNA 72.5 24 0.00052 31.0 8.2 25 128-154 76-101 (311)
94 PRK11493 sseA 3-mercaptopyruva 71.8 7 0.00015 33.4 4.6 28 125-154 230-257 (281)
95 cd01532 4RHOD_Repeat_1 Member 71.1 7.8 0.00017 27.1 4.0 30 125-154 49-78 (92)
96 COG3958 Transketolase, C-termi 70.6 31 0.00067 30.4 8.2 139 10-164 163-310 (312)
97 PF05925 IpgD: Enterobacterial 69.8 1.5 3.2E-05 41.2 0.0 23 125-147 452-474 (559)
98 cd01525 RHOD_Kc Member of the 69.5 10 0.00022 26.8 4.4 27 126-154 65-91 (105)
99 cd01529 4RHOD_Repeats Member o 68.8 7.6 0.00016 27.1 3.6 28 125-154 55-82 (96)
100 cd01444 GlpE_ST GlpE sulfurtra 67.5 18 0.00039 24.8 5.3 39 112-154 44-82 (96)
101 COG5016 Pyruvate/oxaloacetate 66.8 17 0.00037 33.4 6.1 59 89-155 167-227 (472)
102 cd01447 Polysulfide_ST Polysul 66.6 8.1 0.00017 27.0 3.4 28 125-154 60-87 (103)
103 COG2089 SpsE Sialic acid synth 65.5 55 0.0012 29.3 8.8 26 111-137 159-186 (347)
104 COG2442 Uncharacterized conser 64.8 5.5 0.00012 28.0 2.1 35 133-168 25-59 (79)
105 cd07944 DRE_TIM_HOA_like 4-hyd 64.8 88 0.0019 26.6 10.0 81 60-148 115-202 (266)
106 PRK08057 cobalt-precorrin-6x r 64.0 8.4 0.00018 32.8 3.5 132 50-189 46-198 (248)
107 PF13292 DXP_synthase_N: 1-deo 63.3 9.4 0.0002 33.0 3.6 41 85-134 229-269 (270)
108 PLN02582 1-deoxy-D-xylulose-5- 62.9 15 0.00033 35.8 5.4 46 86-139 277-323 (677)
109 cd01521 RHOD_PspE2 Member of t 61.8 14 0.00031 26.6 4.0 30 125-154 63-92 (110)
110 PLN02225 1-deoxy-D-xylulose-5- 60.2 15 0.00033 36.0 4.8 47 85-139 320-367 (701)
111 PF03668 ATP_bind_2: P-loop AT 59.5 27 0.00058 30.5 5.8 17 128-144 244-260 (284)
112 PLN02723 3-mercaptopyruvate su 59.4 21 0.00047 31.2 5.3 43 110-154 253-295 (320)
113 PRK09629 bifunctional thiosulf 59.1 21 0.00045 34.4 5.5 42 111-154 208-249 (610)
114 PRK12360 4-hydroxy-3-methylbut 58.1 44 0.00095 29.1 6.9 75 49-133 34-123 (281)
115 PF03102 NeuB: NeuB family; I 58.0 28 0.00061 29.5 5.6 70 64-137 66-152 (241)
116 TIGR03217 4OH_2_O_val_ald 4-hy 57.3 1.3E+02 0.0028 26.6 10.0 74 60-138 120-200 (333)
117 PF04255 DUF433: Protein of un 57.2 8 0.00017 25.0 1.7 32 135-167 15-46 (56)
118 cd01520 RHOD_YbbB Member of th 57.0 31 0.00068 25.6 5.2 29 125-154 85-113 (128)
119 PRK08195 4-hyroxy-2-oxovalerat 56.9 1.3E+02 0.0028 26.7 9.8 74 59-137 120-200 (337)
120 PRK12331 oxaloacetate decarbox 55.8 87 0.0019 29.0 8.8 82 60-149 129-217 (448)
121 PRK01045 ispH 4-hydroxy-3-meth 53.5 59 0.0013 28.5 7.0 79 49-137 33-124 (298)
122 TIGR00204 dxs 1-deoxy-D-xylulo 53.3 22 0.00048 34.1 4.7 44 87-139 234-277 (617)
123 TIGR03586 PseI pseudaminic aci 53.2 1.1E+02 0.0024 27.1 8.8 26 111-136 146-172 (327)
124 TIGR02660 nifV_homocitr homoci 52.8 1.6E+02 0.0034 26.3 9.8 73 60-137 119-196 (365)
125 PRK07097 gluconate 5-dehydroge 52.8 56 0.0012 26.8 6.6 71 60-137 27-98 (265)
126 PLN02234 1-deoxy-D-xylulose-5- 52.7 29 0.00063 33.7 5.4 48 84-139 276-324 (641)
127 cd07938 DRE_TIM_HMGL 3-hydroxy 52.1 73 0.0016 27.3 7.3 81 60-148 120-212 (274)
128 PF00682 HMGL-like: HMGL-like 52.0 1.1E+02 0.0023 25.1 8.1 87 60-154 114-208 (237)
129 TIGR00715 precor6x_red precorr 51.8 15 0.00032 31.4 2.9 48 50-97 47-98 (256)
130 PRK08862 short chain dehydroge 50.8 57 0.0012 26.6 6.3 70 61-137 23-94 (227)
131 PHA02588 cd deoxycytidylate de 50.7 42 0.00092 26.7 5.3 50 49-98 104-154 (168)
132 COG2099 CobK Precorrin-6x redu 50.1 37 0.00081 29.2 5.1 50 49-98 47-100 (257)
133 PRK08063 enoyl-(acyl carrier p 49.9 67 0.0015 25.8 6.6 70 60-136 21-92 (250)
134 cd07037 TPP_PYR_MenD Pyrimidin 49.6 1E+02 0.0022 24.2 7.4 77 60-148 4-81 (162)
135 PRK13394 3-hydroxybutyrate deh 49.5 79 0.0017 25.6 7.0 71 60-137 24-95 (262)
136 COG1054 Predicted sulfurtransf 49.4 1.1E+02 0.0024 27.0 7.9 28 125-154 171-198 (308)
137 PRK07411 hypothetical protein; 49.4 21 0.00045 32.3 3.7 28 125-154 341-368 (390)
138 PRK01269 tRNA s(4)U8 sulfurtra 48.9 32 0.0007 31.9 5.0 28 125-154 448-475 (482)
139 COG1154 Dxs Deoxyxylulose-5-ph 48.8 31 0.00066 33.3 4.8 45 86-139 238-282 (627)
140 PRK05867 short chain dehydroge 48.7 64 0.0014 26.2 6.3 70 60-136 26-96 (253)
141 PF00762 Ferrochelatase: Ferro 48.3 59 0.0013 28.5 6.3 44 59-102 246-300 (316)
142 TIGR01975 isoAsp_dipep isoaspa 48.0 1.6E+02 0.0035 26.5 9.2 140 6-148 23-212 (389)
143 PRK10318 hypothetical protein; 47.9 26 0.00057 26.7 3.4 31 112-142 71-104 (121)
144 PRK12581 oxaloacetate decarbox 46.4 1.5E+02 0.0033 27.7 8.9 82 60-149 138-226 (468)
145 PF00282 Pyridoxal_deC: Pyrido 46.2 42 0.00091 30.0 5.1 69 70-142 141-209 (373)
146 cd07948 DRE_TIM_HCS Saccharomy 46.1 1.5E+02 0.0033 25.2 8.3 72 61-137 119-195 (262)
147 COG2897 SseA Rhodanese-related 45.2 54 0.0012 28.6 5.4 42 111-153 219-260 (285)
148 PRK12571 1-deoxy-D-xylulose-5- 44.7 44 0.00095 32.3 5.3 47 85-139 240-286 (641)
149 cd07995 TPK Thiamine pyrophosp 44.1 89 0.0019 25.4 6.4 72 59-140 31-104 (208)
150 cd01445 TST_Repeats Thiosulfat 43.6 76 0.0016 24.1 5.6 45 111-155 80-125 (138)
151 TIGR03569 NeuB_NnaB N-acetylne 43.5 1.6E+02 0.0035 26.1 8.3 27 110-136 144-173 (329)
152 PRK07414 cob(I)yrinic acid a,c 43.5 35 0.00075 27.7 3.8 40 125-164 20-59 (178)
153 COG1660 Predicted P-loop-conta 43.4 53 0.0011 28.6 5.0 17 128-144 245-261 (286)
154 cd07939 DRE_TIM_NifV Streptomy 43.3 2E+02 0.0043 24.1 10.9 72 61-137 117-193 (259)
155 PRK14040 oxaloacetate decarbox 43.0 97 0.0021 29.8 7.3 55 87-149 164-218 (593)
156 cd07212 Pat_PNPLA9 Patatin-lik 42.2 35 0.00077 29.8 3.9 50 117-168 17-68 (312)
157 PRK05692 hydroxymethylglutaryl 42.2 1.1E+02 0.0023 26.5 6.9 72 61-137 127-210 (287)
158 cd07945 DRE_TIM_CMS Leptospira 41.7 1.2E+02 0.0025 26.1 7.0 80 61-148 122-210 (280)
159 PRK12937 short chain dehydroge 41.6 1.2E+02 0.0026 24.2 6.8 70 60-136 22-93 (245)
160 TIGR03799 NOD_PanD_pyr putativ 41.5 73 0.0016 30.0 6.1 57 82-142 221-280 (522)
161 TIGR01108 oadA oxaloacetate de 40.6 92 0.002 29.9 6.7 82 60-149 124-212 (582)
162 cd07937 DRE_TIM_PC_TC_5S Pyruv 40.2 2.3E+02 0.0051 24.1 9.8 73 60-137 124-203 (275)
163 PRK07478 short chain dehydroge 40.2 1.1E+02 0.0023 24.9 6.3 70 60-136 23-93 (254)
164 PRK08213 gluconate 5-dehydroge 39.9 1E+02 0.0022 25.1 6.2 69 61-136 30-99 (259)
165 PF02775 TPP_enzyme_C: Thiamin 39.7 94 0.002 23.6 5.6 42 82-133 112-153 (153)
166 TIGR00173 menD 2-succinyl-5-en 39.6 1.7E+02 0.0037 26.4 8.1 77 60-148 7-84 (432)
167 PRK09282 pyruvate carboxylase 39.3 1.1E+02 0.0024 29.4 7.1 55 87-149 163-217 (592)
168 PRK06947 glucose-1-dehydrogena 39.1 1.3E+02 0.0027 24.2 6.6 70 60-136 19-90 (248)
169 PRK08628 short chain dehydroge 39.1 2E+02 0.0042 23.3 7.8 69 60-136 24-93 (258)
170 PRK14042 pyruvate carboxylase 38.9 2.7E+02 0.006 26.8 9.6 83 59-149 128-217 (596)
171 cd07039 TPP_PYR_POX Pyrimidine 38.8 1.9E+02 0.0041 22.6 8.0 77 60-148 7-84 (164)
172 PLN02790 transketolase 38.8 60 0.0013 31.5 5.2 51 82-139 191-241 (654)
173 PRK07523 gluconate 5-dehydroge 38.8 1.2E+02 0.0027 24.5 6.5 70 61-137 28-98 (255)
174 PRK12481 2-deoxy-D-gluconate 3 38.7 1.7E+02 0.0037 23.8 7.4 68 60-136 25-93 (251)
175 PRK13371 4-hydroxy-3-methylbut 38.6 1.3E+02 0.0027 27.5 6.9 78 49-136 71-167 (387)
176 PRK06139 short chain dehydroge 37.9 94 0.002 27.1 5.9 69 60-135 24-93 (330)
177 TIGR02415 23BDH acetoin reduct 37.3 1.5E+02 0.0032 23.8 6.8 69 61-136 18-87 (254)
178 PRK08643 acetoin reductase; Va 37.2 1.2E+02 0.0027 24.4 6.3 70 60-136 19-89 (256)
179 PTZ00089 transketolase; Provis 37.0 74 0.0016 30.9 5.5 51 82-139 202-252 (661)
180 PRK08936 glucose-1-dehydrogena 36.8 1.4E+02 0.0031 24.3 6.6 70 60-136 24-95 (261)
181 PRK06128 oxidoreductase; Provi 36.4 1.6E+02 0.0035 24.8 7.0 69 61-136 73-144 (300)
182 PRK07814 short chain dehydroge 36.4 95 0.0021 25.4 5.5 70 60-136 27-97 (263)
183 PRK12315 1-deoxy-D-xylulose-5- 36.3 84 0.0018 30.0 5.7 46 85-139 201-246 (581)
184 PF13625 Helicase_C_3: Helicas 35.9 74 0.0016 23.8 4.4 39 145-183 46-85 (129)
185 PLN02746 hydroxymethylglutaryl 35.8 1.5E+02 0.0034 26.5 7.0 80 61-148 169-260 (347)
186 PRK06463 fabG 3-ketoacyl-(acyl 35.8 2.1E+02 0.0045 23.2 7.5 65 60-136 24-89 (255)
187 PF14555 UBA_4: UBA-like domai 35.5 58 0.0013 19.6 3.1 24 142-165 16-39 (43)
188 PRK06113 7-alpha-hydroxysteroi 35.4 1.6E+02 0.0035 23.8 6.8 71 60-137 28-99 (255)
189 cd00158 RHOD Rhodanese Homolog 35.1 56 0.0012 21.5 3.3 27 124-152 48-74 (89)
190 COG0787 Alr Alanine racemase [ 35.0 2.9E+02 0.0063 24.9 8.6 80 61-164 67-148 (360)
191 PRK09389 (R)-citramalate synth 34.9 3.8E+02 0.0083 25.0 10.7 80 61-148 121-205 (488)
192 PRK06935 2-deoxy-D-gluconate 3 34.8 1.9E+02 0.0041 23.4 7.1 70 60-137 32-102 (258)
193 cd02007 TPP_DXS Thiamine pyrop 34.8 1.9E+02 0.004 23.3 6.9 64 65-137 125-191 (195)
194 PRK12935 acetoacetyl-CoA reduc 34.7 1.9E+02 0.004 23.2 6.9 70 60-136 23-94 (247)
195 TIGR00853 pts-lac PTS system, 34.7 65 0.0014 23.0 3.7 28 126-154 3-33 (95)
196 PF04263 TPK_catalytic: Thiami 34.3 2E+02 0.0043 21.6 7.5 74 59-142 25-100 (123)
197 KOG0025 Zn2+-binding dehydroge 34.3 1.6E+02 0.0035 26.2 6.6 21 127-149 234-254 (354)
198 PRK12429 3-hydroxybutyrate deh 33.8 1.8E+02 0.0039 23.3 6.7 69 61-136 22-91 (258)
199 PRK13012 2-oxoacid dehydrogena 33.5 2.4E+02 0.0052 28.7 8.5 141 49-191 737-894 (896)
200 PRK08589 short chain dehydroge 33.3 1.6E+02 0.0036 24.2 6.5 70 60-137 23-93 (272)
201 PRK08594 enoyl-(acyl carrier p 33.2 2.7E+02 0.0059 22.8 8.0 69 60-135 26-96 (257)
202 PRK07878 molybdopterin biosynt 33.1 56 0.0012 29.5 3.8 28 125-154 342-369 (392)
203 PRK11858 aksA trans-homoaconit 33.1 3.6E+02 0.0078 24.1 11.0 72 61-137 123-199 (378)
204 PRK07454 short chain dehydroge 32.7 1.6E+02 0.0034 23.6 6.2 70 60-136 23-93 (241)
205 PLN02723 3-mercaptopyruvate su 32.0 1.1E+02 0.0023 26.7 5.3 43 111-154 88-130 (320)
206 PRK05866 short chain dehydroge 31.8 1.5E+02 0.0031 25.1 6.0 70 61-137 58-128 (293)
207 PRK07791 short chain dehydroge 31.8 2.1E+02 0.0045 24.0 7.0 69 61-136 24-102 (286)
208 PRK07035 short chain dehydroge 31.8 1.3E+02 0.0028 24.3 5.6 71 60-137 25-96 (252)
209 PF10302 DUF2407: DUF2407 ubiq 31.6 27 0.00059 25.4 1.3 10 127-136 86-95 (97)
210 PRK06701 short chain dehydroge 31.6 2.2E+02 0.0048 23.9 7.1 70 60-136 63-134 (290)
211 PRK08690 enoyl-(acyl carrier p 31.5 1.4E+02 0.003 24.6 5.8 68 60-135 25-93 (261)
212 PRK06123 short chain dehydroge 31.3 1.7E+02 0.0036 23.4 6.1 70 61-137 20-91 (248)
213 PRK07677 short chain dehydroge 31.2 1.8E+02 0.0039 23.5 6.4 70 61-137 19-89 (252)
214 PRK12939 short chain dehydroge 31.1 2.1E+02 0.0044 22.8 6.6 71 60-137 24-95 (250)
215 PRK08340 glucose-1-dehydrogena 30.9 1.5E+02 0.0032 24.1 5.8 69 60-136 17-86 (259)
216 cd01535 4RHOD_Repeat_4 Member 30.8 1.5E+02 0.0032 22.7 5.4 39 111-153 36-74 (145)
217 PRK08277 D-mannonate oxidoredu 30.8 1.9E+02 0.004 23.8 6.5 70 60-136 27-97 (278)
218 cd05567 PTS_IIB_mannitol PTS_I 30.7 78 0.0017 21.9 3.5 22 128-149 2-23 (87)
219 cd06831 PLPDE_III_ODC_like_AZI 30.7 1.7E+02 0.0038 26.3 6.6 88 49-138 84-176 (394)
220 TIGR01839 PHA_synth_II poly(R) 30.5 3E+02 0.0066 26.4 8.3 65 70-137 229-300 (560)
221 PRK06114 short chain dehydroge 30.5 2.8E+02 0.0061 22.4 7.4 71 60-137 25-97 (254)
222 PRK15457 ethanolamine utilizat 30.3 1.8E+02 0.0039 24.7 6.1 45 55-99 5-50 (233)
223 PRK06138 short chain dehydroge 30.2 2.2E+02 0.0049 22.7 6.7 66 61-136 23-91 (252)
224 TIGR00216 ispH_lytB (E)-4-hydr 30.2 2E+02 0.0044 24.9 6.6 75 49-133 32-120 (280)
225 PRK05653 fabG 3-ketoacyl-(acyl 30.2 2.7E+02 0.0058 21.9 7.1 70 60-137 22-93 (246)
226 PRK12743 oxidoreductase; Provi 30.0 2.4E+02 0.0052 22.9 6.9 71 60-137 19-91 (256)
227 smart00400 ZnF_CHCC zinc finge 30.0 57 0.0012 20.7 2.5 31 130-161 23-53 (55)
228 PRK07533 enoyl-(acyl carrier p 30.0 2.9E+02 0.0062 22.6 7.4 69 59-135 28-97 (258)
229 PRK07666 fabG 3-ketoacyl-(acyl 29.9 2.1E+02 0.0046 22.7 6.5 71 60-137 24-95 (239)
230 PRK06182 short chain dehydroge 29.9 2.3E+02 0.0051 23.2 6.9 64 60-136 20-84 (273)
231 PRK06194 hypothetical protein; 29.9 2.4E+02 0.0053 23.2 7.0 71 60-137 23-94 (287)
232 PRK07063 short chain dehydroge 29.6 2.1E+02 0.0045 23.2 6.5 70 60-136 24-96 (260)
233 PRK05876 short chain dehydroge 29.0 1.7E+02 0.0037 24.4 5.9 69 60-135 23-92 (275)
234 TIGR01832 kduD 2-deoxy-D-gluco 29.0 3E+02 0.0065 21.9 7.4 69 60-137 22-91 (248)
235 PRK07109 short chain dehydroge 28.9 1.7E+02 0.0036 25.4 6.0 70 60-136 25-95 (334)
236 TIGR00539 hemN_rel putative ox 28.7 4.1E+02 0.0088 23.4 10.0 89 49-137 56-161 (360)
237 PRK08415 enoyl-(acyl carrier p 28.5 1.9E+02 0.0041 24.2 6.2 68 60-135 24-92 (274)
238 PRK07710 acetolactate synthase 28.5 3.3E+02 0.0071 25.6 8.3 77 60-148 23-99 (571)
239 PF13607 Succ_CoA_lig: Succiny 28.3 1.5E+02 0.0033 22.7 5.0 75 61-144 19-98 (138)
240 KOG1529 Mercaptopyruvate sulfu 28.3 1E+02 0.0022 27.0 4.4 38 111-148 221-258 (286)
241 PF08659 KR: KR domain; Inter 28.1 1.7E+02 0.0038 22.8 5.5 68 60-135 17-90 (181)
242 cd00861 ProRS_anticodon_short 28.0 1.2E+02 0.0026 20.6 4.1 35 61-96 25-59 (94)
243 PRK07890 short chain dehydroge 27.9 1.9E+02 0.0041 23.2 5.9 69 61-136 23-92 (258)
244 PRK08085 gluconate 5-dehydroge 27.8 2.5E+02 0.0055 22.6 6.7 71 60-137 26-97 (254)
245 PRK07062 short chain dehydroge 27.4 2.6E+02 0.0057 22.6 6.8 70 60-136 25-97 (265)
246 PRK08993 2-deoxy-D-gluconate 3 27.4 3.3E+02 0.0072 22.0 7.8 68 61-137 28-96 (253)
247 PF10727 Rossmann-like: Rossma 27.2 51 0.0011 25.1 2.1 27 111-137 78-107 (127)
248 PF02585 PIG-L: GlcNAc-PI de-N 27.2 2.5E+02 0.0054 20.4 8.0 87 49-137 1-112 (128)
249 PRK07774 short chain dehydroge 27.0 2.5E+02 0.0053 22.4 6.4 70 60-136 23-93 (250)
250 cd02008 TPP_IOR_alpha Thiamine 26.9 2E+02 0.0043 22.5 5.7 45 82-135 132-176 (178)
251 PRK14041 oxaloacetate decarbox 26.7 2.1E+02 0.0046 26.7 6.5 55 87-149 162-216 (467)
252 KOG0629 Glutamate decarboxylas 26.7 2.7E+02 0.006 26.1 7.0 68 67-138 194-264 (510)
253 PRK06172 short chain dehydroge 26.6 2.5E+02 0.0054 22.6 6.4 70 60-136 24-94 (253)
254 cd02071 MM_CoA_mut_B12_BD meth 26.4 80 0.0017 23.3 3.1 9 60-68 71-79 (122)
255 PRK12823 benD 1,6-dihydroxycyc 26.3 3.1E+02 0.0066 22.1 6.9 69 60-136 25-94 (260)
256 PRK12558 glutamyl-tRNA synthet 26.3 1.3E+02 0.0028 27.9 5.0 68 126-193 223-301 (445)
257 PF13377 Peripla_BP_3: Peripla 26.2 2.7E+02 0.0058 20.4 7.2 84 61-153 2-92 (160)
258 PRK05650 short chain dehydroge 26.1 2.2E+02 0.0047 23.3 6.0 71 60-137 17-88 (270)
259 PRK12330 oxaloacetate decarbox 26.1 2.4E+02 0.0053 26.6 6.8 55 87-149 164-220 (499)
260 PRK05993 short chain dehydroge 26.1 3.4E+02 0.0073 22.4 7.2 62 61-135 22-85 (277)
261 cd02952 TRP14_like Human TRX-r 26.1 44 0.00096 25.1 1.6 50 114-163 9-58 (119)
262 PRK09405 aceE pyruvate dehydro 26.1 5.3E+02 0.012 26.3 9.5 128 61-190 747-888 (891)
263 PRK12826 3-ketoacyl-(acyl-carr 26.0 3.2E+02 0.007 21.6 6.9 71 60-137 23-94 (251)
264 PRK05855 short chain dehydroge 26.0 2E+02 0.0043 26.2 6.3 70 60-136 332-402 (582)
265 KOG1200 Mitochondrial/plastidi 26.0 2.7E+02 0.0059 23.5 6.3 71 61-143 32-106 (256)
266 PRK05416 glmZ(sRNA)-inactivati 26.0 1.2E+02 0.0025 26.4 4.4 16 129-144 248-263 (288)
267 PRK07024 short chain dehydroge 25.9 1.9E+02 0.0042 23.4 5.6 66 60-136 19-88 (257)
268 TIGR02090 LEU1_arch isopropylm 25.7 4.8E+02 0.01 23.2 10.8 73 60-137 118-195 (363)
269 PRK08155 acetolactate synthase 25.6 3.4E+02 0.0074 25.4 7.8 37 60-97 20-57 (564)
270 PRK06181 short chain dehydroge 25.6 2.7E+02 0.0058 22.5 6.4 27 111-137 62-89 (263)
271 cd02012 TPP_TK Thiamine pyroph 25.3 1.9E+02 0.0042 24.1 5.6 49 82-139 182-230 (255)
272 PRK08278 short chain dehydroge 24.9 3.5E+02 0.0077 22.2 7.1 69 61-136 24-100 (273)
273 PF00106 adh_short: short chai 24.9 1.6E+02 0.0035 21.8 4.7 71 61-138 18-92 (167)
274 PLN03228 methylthioalkylmalate 24.9 5.5E+02 0.012 24.3 8.9 81 60-148 215-305 (503)
275 cd00530 PTE Phosphotriesterase 24.8 1.5E+02 0.0033 24.8 4.9 19 59-77 37-55 (293)
276 PF00308 Bac_DnaA: Bacterial d 24.8 1.8E+02 0.0039 23.8 5.2 52 114-165 19-82 (219)
277 PRK08199 thiamine pyrophosphat 24.8 3.4E+02 0.0074 25.4 7.7 77 60-148 15-92 (557)
278 PRK08978 acetolactate synthase 24.8 4.5E+02 0.0097 24.5 8.4 78 60-149 8-85 (548)
279 PRK06505 enoyl-(acyl carrier p 24.7 2.5E+02 0.0055 23.3 6.2 69 60-136 26-95 (271)
280 PRK06036 translation initiatio 24.6 1.2E+02 0.0025 27.2 4.3 25 125-149 147-174 (339)
281 TIGR03099 dCO2ase_PEP1 pyridox 24.6 3.1E+02 0.0068 24.3 7.1 88 49-138 97-197 (398)
282 PRK09134 short chain dehydroge 24.4 3.2E+02 0.0069 22.1 6.7 70 60-136 26-97 (258)
283 cd06810 PLPDE_III_ODC_DapDC_li 24.4 2.7E+02 0.0058 24.2 6.6 88 49-137 73-173 (368)
284 PRK00915 2-isopropylmalate syn 24.3 6E+02 0.013 23.8 11.1 73 60-137 126-207 (513)
285 PRK06949 short chain dehydroge 24.2 2.7E+02 0.0059 22.3 6.2 70 60-136 26-96 (258)
286 PRK05693 short chain dehydroge 24.2 4E+02 0.0086 21.8 7.8 63 60-135 18-81 (274)
287 PRK05557 fabG 3-ketoacyl-(acyl 24.1 3.6E+02 0.0077 21.2 7.2 70 60-136 22-93 (248)
288 cd01310 TatD_DNAse TatD like p 24.0 1.5E+02 0.0033 23.8 4.6 22 114-136 110-131 (251)
289 PLN02821 1-hydroxy-2-methyl-2- 24.0 4.4E+02 0.0095 24.7 7.9 79 49-137 139-236 (460)
290 TIGR01838 PHA_synth_I poly(R)- 23.8 5.2E+02 0.011 24.5 8.6 26 112-137 246-274 (532)
291 PRK07789 acetolactate synthase 23.8 3.6E+02 0.0079 25.6 7.7 77 60-148 38-115 (612)
292 TIGR03186 AKGDH_not_PDH alpha- 23.7 7.3E+02 0.016 25.4 9.9 134 49-184 729-879 (889)
293 TIGR01829 AcAcCoA_reduct aceto 23.7 3.1E+02 0.0067 21.6 6.4 68 60-136 17-88 (242)
294 PRK12938 acetyacetyl-CoA reduc 23.7 3E+02 0.0065 21.9 6.3 71 60-137 20-92 (246)
295 PRK07064 hypothetical protein; 23.7 4.3E+02 0.0093 24.5 8.1 77 60-148 10-87 (544)
296 TIGR00640 acid_CoA_mut_C methy 23.6 1E+02 0.0022 23.4 3.2 35 60-94 74-108 (132)
297 cd02018 TPP_PFOR Thiamine pyro 23.5 2.6E+02 0.0055 23.3 6.0 44 83-135 158-202 (237)
298 PRK07413 hypothetical protein; 23.5 1E+02 0.0023 28.0 3.8 28 126-153 200-227 (382)
299 PRK06483 dihydromonapterin red 23.3 3.8E+02 0.0082 21.2 7.9 64 61-136 20-84 (236)
300 COG1778 Low specificity phosph 23.2 1.8E+02 0.004 23.4 4.7 53 46-101 20-83 (170)
301 PRK07806 short chain dehydroge 22.8 3.5E+02 0.0077 21.5 6.6 71 60-137 23-95 (248)
302 PRK06882 acetolactate synthase 22.8 3.7E+02 0.008 25.2 7.5 77 60-148 11-88 (574)
303 PRK12828 short chain dehydroge 22.8 3.4E+02 0.0073 21.2 6.4 69 60-137 24-93 (239)
304 PRK08527 acetolactate synthase 22.8 3.9E+02 0.0085 25.0 7.7 38 60-98 10-48 (563)
305 cd06808 PLPDE_III Type III Pyr 22.6 3.7E+02 0.0079 21.0 6.5 87 49-137 63-153 (211)
306 cd07211 Pat_PNPLA8 Patatin-lik 22.6 1E+02 0.0023 26.4 3.5 49 117-166 26-76 (308)
307 COG4806 RhaA L-rhamnose isomer 22.5 57 0.0012 28.8 1.8 27 114-143 23-49 (419)
308 PRK12344 putative alpha-isopro 22.3 6.7E+02 0.014 23.7 10.2 81 60-148 132-220 (524)
309 PF02572 CobA_CobO_BtuR: ATP:c 22.3 1E+02 0.0022 24.8 3.1 30 126-155 3-32 (172)
310 PRK08617 acetolactate synthase 22.1 4.5E+02 0.0099 24.5 7.9 38 60-98 12-49 (552)
311 PF12683 DUF3798: Protein of u 22.1 84 0.0018 27.3 2.7 76 61-139 124-212 (275)
312 TIGR00118 acolac_lg acetolacta 21.9 5.2E+02 0.011 24.1 8.3 77 60-148 8-85 (558)
313 TIGR03206 benzo_BadH 2-hydroxy 21.9 3.6E+02 0.0077 21.4 6.4 27 111-137 64-91 (250)
314 PF01168 Ala_racemase_N: Alani 21.9 3.6E+02 0.0078 21.4 6.4 67 59-141 57-125 (218)
315 PRK14895 gltX glutamyl-tRNA sy 21.8 1.5E+02 0.0032 28.2 4.5 55 139-193 244-301 (513)
316 PRK08159 enoyl-(acyl carrier p 21.8 3.2E+02 0.007 22.7 6.3 69 60-136 29-98 (272)
317 PRK08322 acetolactate synthase 21.7 4.9E+02 0.011 24.1 8.1 77 60-148 8-84 (547)
318 cd07940 DRE_TIM_IPMS 2-isoprop 21.7 4.8E+02 0.01 21.8 10.6 72 61-137 121-200 (268)
319 PLN02449 ferrochelatase 21.7 3.9E+02 0.0085 25.1 7.2 45 58-102 342-397 (485)
320 PRK00087 4-hydroxy-3-methylbut 21.6 3.4E+02 0.0073 26.3 7.1 78 49-136 33-123 (647)
321 COG3417 FlgN Collagen-binding 21.6 74 0.0016 26.3 2.2 51 3-53 17-74 (200)
322 cd00568 TPP_enzymes Thiamine p 21.5 3.3E+02 0.0072 20.4 5.9 41 82-134 127-167 (168)
323 COG0276 HemH Protoheme ferro-l 21.4 1.5E+02 0.0033 26.3 4.3 44 59-102 248-302 (320)
324 PLN02608 L-ascorbate peroxidas 21.4 54 0.0012 28.6 1.5 16 2-17 50-65 (289)
325 cd07216 Pat17_PNPLA8_PNPLA9_li 21.4 82 0.0018 27.2 2.6 38 130-168 42-79 (309)
326 TIGR01963 PHB_DH 3-hydroxybuty 21.4 3.6E+02 0.0079 21.4 6.4 70 60-136 18-88 (255)
327 PRK06124 gluconate 5-dehydroge 21.4 3.6E+02 0.0077 21.7 6.4 69 61-136 29-98 (256)
328 PRK12753 transketolase; Review 21.1 1.8E+02 0.0039 28.3 5.1 49 82-138 200-248 (663)
329 PRK12829 short chain dehydroge 21.1 2.8E+02 0.006 22.3 5.7 68 60-137 28-97 (264)
330 PLN02439 arginine decarboxylas 21.0 5.2E+02 0.011 24.7 8.1 74 65-138 105-193 (559)
331 PRK10401 DNA-binding transcrip 20.9 5.2E+02 0.011 21.9 8.2 86 61-153 169-261 (346)
332 COG3830 ACT domain-containing 20.7 57 0.0012 23.6 1.2 25 134-158 8-34 (90)
333 PRK07775 short chain dehydroge 20.7 3.8E+02 0.0082 22.0 6.5 70 60-136 27-97 (274)
334 PF01503 PRA-PH: Phosphoribosy 20.4 1.6E+02 0.0034 20.3 3.4 18 149-166 66-83 (83)
335 cd02003 TPP_IolD Thiamine pyro 20.4 3.2E+02 0.0069 21.9 5.8 24 111-135 160-183 (205)
336 COG1038 PycA Pyruvate carboxyl 20.4 2.6E+02 0.0056 28.5 5.9 52 82-138 96-170 (1149)
337 PRK06965 acetolactate synthase 20.3 4.7E+02 0.01 24.7 7.7 77 60-148 28-105 (587)
338 PRK12827 short chain dehydroge 20.3 4E+02 0.0087 21.0 6.4 27 111-137 71-98 (249)
339 TIGR01378 thi_PPkinase thiamin 20.2 3.6E+02 0.0078 21.8 6.1 73 59-140 27-100 (203)
340 COG1165 MenD 2-succinyl-6-hydr 20.1 3.8E+02 0.0082 25.8 6.8 65 60-137 15-81 (566)
341 cd00561 CobA_CobO_BtuR ATP:cor 20.1 1.6E+02 0.0035 23.2 3.8 24 127-150 3-26 (159)
342 PRK06500 short chain dehydroge 20.0 4.5E+02 0.0097 20.8 6.7 67 60-136 23-90 (249)
343 PRK11866 2-oxoacid ferredoxin 20.0 3.1E+02 0.0068 23.7 5.9 47 82-137 147-197 (279)
No 1
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=100.00 E-value=2.5e-40 Score=264.34 Aligned_cols=153 Identities=54% Similarity=0.976 Sum_probs=110.0
Q ss_pred eecCCCccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHH
Q 029149 36 FVPPFNFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIR 115 (198)
Q Consensus 36 ~~p~~nf~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~ 115 (198)
++||.||+.|+++||||++|++.++++|+++|+||||+|++++.+....++++++||+++|+++.....+.+.+.++.+.
T Consensus 1 lvpP~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~ 80 (164)
T PF03162_consen 1 LVPPLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVA 80 (164)
T ss_dssp B---TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHH
T ss_pred CcCCccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHH
Confidence 47999999999999999999999999999999999999999987777788999999999999999877655667789999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhccccCccHHHHHHHcCcccccc
Q 029149 116 EALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDISSFKR 188 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~~~~~ 188 (198)
++++.+++..++||||||..|++|||+|+|||+++|||+.++|++||++++.++.+..+++|||.|+.+++.-
T Consensus 81 ~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~~~~~~ 153 (164)
T PF03162_consen 81 EALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDVELVVP 153 (164)
T ss_dssp HHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT--------
T ss_pred HHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCcceecc
Confidence 9999999988999999999999999999999999999999999999999999988889999999999997643
No 2
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=100.00 E-value=1.1e-32 Score=227.98 Aligned_cols=167 Identities=65% Similarity=1.201 Sum_probs=157.8
Q ss_pred CCCcceecCCCccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCC----CCC
Q 029149 31 DGEELFVPPFNFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCK----EPF 106 (198)
Q Consensus 31 ~~~~~~~p~~nf~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~----~p~ 106 (198)
..+..+.||.||..|.++|||||.|.+.++.+|+.+++++||.|++|+++.....+++.++|+++|+.|++.+ .|+
T Consensus 49 ~~~~~lipPlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~ 128 (249)
T KOG1572|consen 49 TGEMVLIPPLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPF 128 (249)
T ss_pred CCCceecCCccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCC
Confidence 4456689999999999999999999999999999999999999999998877888999999999999999876 788
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhccccCccHHHHHHHcCcccc
Q 029149 107 VNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDISSF 186 (198)
Q Consensus 107 ~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~~~ 186 (198)
+.+..+.|.++++.+++..++|+|+||..|++|||++++|++++++|+...+++||++++.++.+..+++||+.||++.+
T Consensus 129 ~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~sk~r~~d~~Fie~fd~~~~ 208 (249)
T KOG1572|consen 129 VNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAGSKGRRVDLRFIEMFDTNPK 208 (249)
T ss_pred CCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhccchhHHHHHHHHHHhccccc
Confidence 88888999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred cccCCCCccCC
Q 029149 187 KRLPMSFSCSA 197 (198)
Q Consensus 187 ~~~~~~~~~~~ 197 (198)
++.+++++|+.
T Consensus 209 ~~~~~~~~~~~ 219 (249)
T KOG1572|consen 209 KNVKLSIPCAY 219 (249)
T ss_pred ccccccccccc
Confidence 99999999974
No 3
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.90 E-value=4.8e-23 Score=159.59 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=98.8
Q ss_pred ccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCC--C----chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHH
Q 029149 42 FAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYP--D----SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIR 115 (198)
Q Consensus 42 f~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~--~----~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~ 115 (198)
+.+|++.+|+|+++++.+++.|+++||++|||||++... . .+.++++..|++|+|+|+.... ++.+.+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-----~~~~~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-----ITPDDVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-----CCHHHHH
Confidence 467899999999999999999999999999999986421 1 1235667899999999998643 3567777
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhcc
Q 029149 116 EALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~ 168 (198)
.+.+.+ +..++|||+||++|+ |||+++++++..+||+.++|+++.+..+..
T Consensus 77 ~f~~~~-~~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 77 TFRAAI-GAAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred HHHHHH-HhCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 555554 555899999999999 999999999999999999999988776544
No 4
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.89 E-value=1.2e-22 Score=156.15 Aligned_cols=128 Identities=18% Similarity=0.274 Sum_probs=99.1
Q ss_pred cccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 029149 43 AIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVL 122 (198)
Q Consensus 43 ~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~ 122 (198)
.+|.|+||+|++|.+.++++|+++||++||||+.+.... ...+++|+++|+.|..... ..+.+.++++++.
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~~---~~~~~~~~~~~i~ 72 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNL------NKKGFTYLGVPILDNTETK---ISPYFPEAVEFIE 72 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCC------CCCCCEEEEEECCCCCCCC---hHHHHHHHHHHHH
Confidence 468999999999999999999999999999999875421 2578999999999843221 2344555555553
Q ss_pred h--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHHc
Q 029149 123 D--ERNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIELF 181 (198)
Q Consensus 123 ~--~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~ 181 (198)
. ..++||||||.+|.+|||+++++|||. .||+.++|++.++..+ +.. ..++.|++++
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R-~~~-~p~~~~~~qL 132 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRR-PII-SPNFGFLRQL 132 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHC-Ccc-CCCHhHHHHH
Confidence 2 458899999999999999999999996 9999999999776655 433 2455665544
No 5
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.89 E-value=4.3e-23 Score=164.07 Aligned_cols=121 Identities=26% Similarity=0.401 Sum_probs=78.5
Q ss_pred ccccc-eEecCCCC---cccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCC--------------
Q 029149 44 IVDNG-IFRSGFPD---SANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEP-------------- 105 (198)
Q Consensus 44 ~V~~~-Lyrs~~p~---~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p-------------- 105 (198)
.|.++ ||||+.+. +++++.|.++||++|||||+........+. ...|++++++|+......
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~-~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP-LIDGVQYVHIPIFGDDASSPDKLAELLQSSAD 93 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC-CcCCceeeeecccccccccccccccccccccc
Confidence 56677 99999986 568899999999999999986421101111 234999999998754322
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhh
Q 029149 106 -----------FVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFA 166 (198)
Q Consensus 106 -----------~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~ 166 (198)
.+....+.+.++|+.+.+.. +||||||++||||||+++|++|.+.|++.++|.+||.+++
T Consensus 94 ~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY~lSn 164 (164)
T PF13350_consen 94 APRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADYLLSN 164 (164)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 00112477888899888765 7999999999999999999999999999999999999874
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.88 E-value=7.3e-22 Score=151.19 Aligned_cols=131 Identities=18% Similarity=0.272 Sum_probs=101.2
Q ss_pred ccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHH
Q 029149 42 FAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVV 121 (198)
Q Consensus 42 f~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i 121 (198)
+.+|.++||.|+++.+.+.++|+++||++||||+++... ......|++|.|+|+.|...+. ....+..+++++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~~i 74 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQD---ISKYFDEAVDFI 74 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCC---hHHHHHHHHHHH
Confidence 468999999999999999999999999999999998643 2335679999999999865332 233444444444
Q ss_pred Hh--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHHc
Q 029149 122 LD--ERNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIELF 181 (198)
Q Consensus 122 ~~--~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~ 181 (198)
.. ..++||+|||.+|.+|||+++++|++. .+|+.++|++.++..+.. . ..++.|.+++
T Consensus 75 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~-~-~~~~~~~~~l 135 (139)
T cd00127 75 DDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPI-I-SPNAGFMRQL 135 (139)
T ss_pred HHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCc-c-CCCHHHHHHH
Confidence 32 347899999999999999999999985 999999999977776553 3 2445555443
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.84 E-value=5.8e-20 Score=147.08 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=107.9
Q ss_pred CccccccceEecCCCCcc----cHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHH
Q 029149 41 NFAIVDNGIFRSGFPDSA----NFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIRE 116 (198)
Q Consensus 41 nf~~V~~~Lyrs~~p~~~----~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~ 116 (198)
...++...++....|... +++.|+++||++||++....+ ..+.++..|++|.++|++|...| +.+.+.+
T Consensus 10 ~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~---~~~~~~~~gi~~~~~p~~D~~~P----~~~~i~~ 82 (166)
T PTZ00242 10 QIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY---DAELLEKNGIEVHDWPFDDGAPP----PKAVIDN 82 (166)
T ss_pred ceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC---CHHHHHHCCCEEEecCCCCCCCC----CHHHHHH
Confidence 356778888888888874 568999999999999987543 23456789999999999987766 3555655
Q ss_pred HHHHHHh------cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHHcCc
Q 029149 117 ALKVVLD------ERNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIELFDI 183 (198)
Q Consensus 117 ~l~~i~~------~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~ 183 (198)
+++++.+ ..+++|+|||.+|.+|||+++++||+. .||+.++|++.++..+.......+..|++.|..
T Consensus 83 ~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 83 WLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKKYKP 156 (166)
T ss_pred HHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 6655532 248899999999999999999999997 559999999988887766554578888888874
No 8
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.84 E-value=1.4e-20 Score=141.10 Aligned_cols=101 Identities=24% Similarity=0.431 Sum_probs=71.6
Q ss_pred ccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCC------CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHH
Q 029149 42 FAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYP------DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIR 115 (198)
Q Consensus 42 f~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~------~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~ 115 (198)
|.+|++.++.|+||++++++.|++.|||||||+|++... ..+.+.+++.|++|+|+|+.... ++.+++.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-----~~~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-----ITEEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-----CCHHHHH
Confidence 578999999999999999999999999999999987432 23567889999999999999753 3578888
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 029149 116 EALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
+|.+.+ +..++|||+||.+|. |++.++++...
T Consensus 77 ~f~~~l-~~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 77 AFADAL-ESLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp HHHHHH-HTTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred HHHHHH-HhCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 665554 556889999999999 99999988653
No 9
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.83 E-value=2.3e-19 Score=150.25 Aligned_cols=134 Identities=13% Similarity=0.184 Sum_probs=108.3
Q ss_pred eEecCCCCc----ccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-
Q 029149 49 IFRSGFPDS----ANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLD- 123 (198)
Q Consensus 49 Lyrs~~p~~----~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~- 123 (198)
+..-..|+. ..++.|+++||++||+++...+. .+.+++.||+++++|++|...|. .+.+.++++++.+
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd---~~~~~~~GI~~~~lpipDg~aPs----~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYN---DGEITSAGINVHELIFPDGDAPT----VDIVSNWLTIVNNV 166 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC---HHHHHHcCCeEEEeecCCCCCCC----HHHHHHHHHHHHHH
Confidence 556666764 35689999999999999876542 34468899999999999988773 5666667666532
Q ss_pred -cCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhccccCccHHHHHHHcCccccccc
Q 029149 124 -ERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDISSFKRL 189 (198)
Q Consensus 124 -~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~~~~~~ 189 (198)
..+++|+|||.+|.+|||+++|+||+..|++.++|++.++..++......|++|++.|....-+++
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPgAIn~~Q~~fL~~y~~~~~k~~ 233 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKGAINKRQLQFLKAYKKKKKKKN 233 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccccc
Confidence 357899999999999999999999999999999999988887776555689999999988664444
No 10
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.81 E-value=2.2e-19 Score=136.91 Aligned_cols=124 Identities=23% Similarity=0.406 Sum_probs=92.5
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCC-CCCCCCCCHHHHHHHHHHHHhcCCC
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGC-KEPFVNIPEETIREALKVVLDERNH 127 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~-~~p~~~~~~~~v~~~l~~i~~~~~~ 127 (198)
||.|+.+.+. ..+|+++||++|||++.+.... ...+..+++|+++|+.|. ..+.. ...+.+.++++... ..++
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~-~~~~~~~~~i~~~~-~~~~ 74 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPIL-EHLDQAVEFIENAI-SEGG 74 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGG-GGHHHHHHHHHHHH-HTTS
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchH-HHHHHHHHhhhhhh-cccc
Confidence 6899999998 9999999999999999976432 334678999999999983 22211 11233334444433 3588
Q ss_pred cEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHH
Q 029149 128 PLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIEL 180 (198)
Q Consensus 128 pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~ 180 (198)
+|||||.+|.+|||+++++|||. .||+.++|++.++..+ +.. ..+..|+++
T Consensus 75 ~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r-p~~-~~~~~~~~~ 126 (133)
T PF00782_consen 75 KVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRR-PQI-NPNPSFIRQ 126 (133)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHS-TTS-THHHHHHHH
T ss_pred eeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHC-CCC-CCCHHHHHH
Confidence 99999999999999999999996 9999999999776665 434 244445444
No 11
>PRK12361 hypothetical protein; Provisional
Probab=99.78 E-value=2.6e-18 Score=159.83 Aligned_cols=137 Identities=13% Similarity=0.174 Sum_probs=107.5
Q ss_pred CccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 029149 41 NFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKV 120 (198)
Q Consensus 41 nf~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~ 120 (198)
.+.+|.|+||.|+.+++.+++.|++.||++||||+.|..... ......+++|+++|+.|...| +.+++.+++++
T Consensus 94 ~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~--~~~~~~~i~yl~iPi~D~~~p----~~~~l~~a~~~ 167 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLD--WSLTEEDIDYLNIPILDHSVP----TLAQLNQAINW 167 (547)
T ss_pred cceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccccc--ccccccCceEEEeecCCCCCC----cHHHHHHHHHH
Confidence 568899999999999999999999999999999997632111 112246899999999997665 35677778877
Q ss_pred HHh--cCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHHHHhhccc-cCccHHHHHHHcCc
Q 029149 121 VLD--ERNHPLLIHCKRGKHRTGCLVGCLRKL--QKWCLSSIFDEYQRFAAAK-ARLSDQRFIELFDI 183 (198)
Q Consensus 121 i~~--~~~~pVLVHC~aG~~RTG~v~a~yL~~--~g~~~~~a~~e~~~~~~~~-~~~~~~~fIe~~~~ 183 (198)
+.+ ..+++|||||.+|.+||++++++|||. .+|+.++|++..+..++.. .+..+.+.++.|..
T Consensus 168 i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~ 235 (547)
T PRK12361 168 IHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLE 235 (547)
T ss_pred HHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Confidence 754 347899999999999999999999995 5899999999777766542 23455666666554
No 12
>PLN02727 NAD kinase
Probab=99.77 E-value=1.7e-18 Score=165.70 Aligned_cols=102 Identities=18% Similarity=0.354 Sum_probs=87.5
Q ss_pred ceEecCCCCcccHHHHHhcCCcEEEEcCCCCCC-----CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 029149 48 GIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYP-----DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVL 122 (198)
Q Consensus 48 ~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~-----~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~ 122 (198)
.+|||+||+++++++|.+.|||||||||++... ..+.+++++.|++|+|+|+.+...| +.+++.+|.+.+-
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap----t~EqVe~fa~~l~ 337 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP----SAEQVEKFASLVS 337 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC----CHHHHHHHHHHHH
Confidence 589999999999999999999999999997642 2367788899999999999876554 5789998888774
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHH-CCC
Q 029149 123 DERNHPLLIHCKRGKHRTGCLVGCLRKL-QKW 153 (198)
Q Consensus 123 ~~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~ 153 (198)
+..++|||+||++|.+|||+|+||||.+ .+.
T Consensus 338 ~slpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 338 DSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred hhcCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 5569999999999999999999999984 443
No 13
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=2.1e-17 Score=124.20 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=96.4
Q ss_pred CccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCC------CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHH
Q 029149 41 NFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYP------DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETI 114 (198)
Q Consensus 41 nf~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~------~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v 114 (198)
.+.+|.+.|+.|+|++++++..++.+|||+|||.|++... ..+.+++++.|+.|.|+|+.... ++.++|
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-----iT~~dV 76 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-----ITEADV 76 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-----CCHHHH
Confidence 4678999999999999999999999999999999997521 34677889999999999999864 467889
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHH
Q 029149 115 REALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEY 162 (198)
Q Consensus 115 ~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~ 162 (198)
+.+.+. ++..++|||.||.+|. |+-.+.++-....|++.+++.+.-
T Consensus 77 ~~f~~A-l~eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a~g 122 (130)
T COG3453 77 EAFQRA-LDEAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEALG 122 (130)
T ss_pred HHHHHH-HHHhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHHHH
Confidence 855554 4556999999999999 987777777767999999987643
No 14
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.68 E-value=8.7e-16 Score=125.61 Aligned_cols=127 Identities=18% Similarity=0.283 Sum_probs=98.6
Q ss_pred ecCCCccccccce---EecCCCCcc-------------cHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecC
Q 029149 37 VPPFNFAIVDNGI---FRSGFPDSA-------------NFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGID 100 (198)
Q Consensus 37 ~p~~nf~~V~~~L---yrs~~p~~~-------------~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~ 100 (198)
++..+|.||.|+. |-+.++..- -+..++...+++|+-|....++ ++.++..||.++++++.
T Consensus 48 ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~yd---~~~f~~~Gi~h~~l~f~ 124 (225)
T KOG1720|consen 48 VENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRLYD---AKRFTDAGIDHHDLFFA 124 (225)
T ss_pred cCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCCCC---hHHhcccCceeeeeecC
Confidence 5678899999982 333333221 2345677889999999887643 34457889999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhcccc
Q 029149 101 GCKEPFVNIPEETIREALKVVLDE-RNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKA 170 (198)
Q Consensus 101 ~~~~p~~~~~~~~v~~~l~~i~~~-~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~ 170 (198)
|...| +++.+.++++.+.+. +++.|.|||++|.||||+|+|||||. .|++..|+++.+|.-+.+.+
T Consensus 125 Dg~tP----~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V 192 (225)
T KOG1720|consen 125 DGSTP----TDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAV 192 (225)
T ss_pred CCCCC----CHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccc
Confidence 99877 467788888776442 27999999999999999999999996 99999999997777665533
No 15
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-16 Score=135.46 Aligned_cols=147 Identities=24% Similarity=0.287 Sum_probs=100.4
Q ss_pred CCCccccccc-eEecCCCCcccHH--HHHhcCCcEEEEcCCCC-C-----CCchHHHhHhCCceEEEeecCCCCCCCCCC
Q 029149 39 PFNFAIVDNG-IFRSGFPDSANFS--FLKSLGLRSVIYLCPEP-Y-----PDSNLEFLKANGIQLFQFGIDGCKEPFVNI 109 (198)
Q Consensus 39 ~~nf~~V~~~-Lyrs~~p~~~~~~--~L~~~GIktVInLr~e~-~-----~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~ 109 (198)
+.++..|.+. .|||++|.+.+.. .+..++++++|+|+.+. . .+....+....++.....+... ....
T Consensus 44 ~~~~~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 119 (249)
T COG2365 44 PLNFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFP----TRED 119 (249)
T ss_pred ccccccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCc----cchh
Confidence 3445555554 9999999988766 77789999999999721 1 1111111122222222222222 1223
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhccccCc--cHHHHHHHcCccccc
Q 029149 110 PEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARL--SDQRFIELFDISSFK 187 (198)
Q Consensus 110 ~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~~~--~~~~fIe~~~~~~~~ 187 (198)
..+.+.+.++.++++.++|||+||++|++|||+++|+|+.+.||+..++++||+.++...... ....|+.....+-+.
T Consensus 120 ~~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (249)
T COG2365 120 AAERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLE 199 (249)
T ss_pred hHHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchh
Confidence 467888888888877679999999999999999999999999999999999999998884322 234555555555444
Q ss_pred cc
Q 029149 188 RL 189 (198)
Q Consensus 188 ~~ 189 (198)
+.
T Consensus 200 ~~ 201 (249)
T COG2365 200 KK 201 (249)
T ss_pred cc
Confidence 43
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.65 E-value=7.1e-16 Score=122.74 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=68.0
Q ss_pred eEecCCCC----------cccHHHHHhcCCcEEEEcCCCC----C-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHH
Q 029149 49 IFRSGFPD----------SANFSFLKSLGLRSVIYLCPEP----Y-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEET 113 (198)
Q Consensus 49 Lyrs~~p~----------~~~~~~L~~~GIktVInLr~e~----~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~ 113 (198)
|..+..|. ..|+++|+..|++.||.|.+.. + .+.+.+.+++.||.++|+||.|+..|. .+.
T Consensus 43 Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd----~~~ 118 (168)
T PF05706_consen 43 LGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPD----FAA 118 (168)
T ss_dssp EEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS-------HHH
T ss_pred eeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCC----HHH
Confidence 66666665 3478899999999999999863 1 246778889999999999999998873 333
Q ss_pred HHHHHHHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHH
Q 029149 114 IREALKVVLD--ERNHPLLIHCKRGKHRTGCLVGCLRKL--QKWCLSSIF 159 (198)
Q Consensus 114 v~~~l~~i~~--~~~~pVLVHC~aG~~RTG~v~a~yL~~--~g~~~~~a~ 159 (198)
+.+.++.+.. .+++.|+|||.+|.||||+++||+|.. .++++++|+
T Consensus 119 ~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 119 AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 4444444432 348899999999999999999999996 457888774
No 17
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.63 E-value=4e-15 Score=116.69 Aligned_cols=124 Identities=16% Similarity=0.317 Sum_probs=94.8
Q ss_pred CccccccceEecCCCC-cccHHHHHhcCCcEEEEcCCCCCC-CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHH
Q 029149 41 NFAIVDNGIFRSGFPD-SANFSFLKSLGLRSVIYLCPEPYP-DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREAL 118 (198)
Q Consensus 41 nf~~V~~~Lyrs~~p~-~~~~~~L~~~GIktVInLr~e~~~-~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l 118 (198)
+++.++..+..|..|. ..+.+.++++|++-||.+..+... .... .-++.||+++.+|..|+... .+.+.+.+++
T Consensus 24 ~wy~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~-~wk~~giE~L~i~T~D~~~~---Ps~~~i~~aV 99 (183)
T KOG1719|consen 24 RWYRIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSN-LWKNYGIEFLVIPTRDYTGA---PSLENIQKAV 99 (183)
T ss_pred ceeeecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhH-HHHhccceeEEeccccccCC---CCHHHHHHHH
Confidence 3344444444444443 257889999999999999986421 1222 34789999999999997532 2578899999
Q ss_pred HHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhcc
Q 029149 119 KVVLD--ERNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 119 ~~i~~--~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~ 168 (198)
++|.. ..++-|+|||++|.+|+.++++||||. .+|++++|.+.++..+..
T Consensus 100 eFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~ 152 (183)
T KOG1719|consen 100 EFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPR 152 (183)
T ss_pred HHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcc
Confidence 99975 347889999999999999999999996 999999999977766554
No 18
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.62 E-value=8.7e-15 Score=116.25 Aligned_cols=134 Identities=15% Similarity=0.168 Sum_probs=101.4
Q ss_pred cCCCccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHH
Q 029149 38 PPFNFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREA 117 (198)
Q Consensus 38 p~~nf~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~ 117 (198)
+...+.+|++.||.|....+.+...|++.||+.|||.+.|.+.-. -.+++|..+|+.|.....+-...+.+.+.
T Consensus 13 ~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~------l~~~qy~kv~~~D~p~~~l~~hfD~vAD~ 86 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTS------LPDIQYMKVPLEDTPQARLYDHFDPVADK 86 (198)
T ss_pred CccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCcc------CCCceeEEEEcccCCcchhhhhhhHHHHH
Confidence 345689999999999878888888999999999999999864311 24789999999986432111113445555
Q ss_pred HHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCc---cHHHHHH
Q 029149 118 LKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARL---SDQRFIE 179 (198)
Q Consensus 118 l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~---~~~~fIe 179 (198)
++.+. .+++.+||||.+|.+|+..++.+|||. +++++.+|+. +.++.++.+|. =++|.|.
T Consensus 87 I~~v~-~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~-~vKa~RpiIRPN~GFw~QLi~ 150 (198)
T KOG1718|consen 87 IHSVI-MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYH-WVKARRPIIRPNVGFWRQLID 150 (198)
T ss_pred HHHHH-hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHH-HHHhhCceeCCCccHHHHHHH
Confidence 55554 358999999999999999999999996 9999999988 66667775443 3455543
No 19
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.59 E-value=1.3e-14 Score=125.13 Aligned_cols=137 Identities=17% Similarity=0.252 Sum_probs=103.2
Q ss_pred CCCccccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHH
Q 029149 39 PFNFAIVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREAL 118 (198)
Q Consensus 39 ~~nf~~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l 118 (198)
..+...|.|+||.|+...+.+...|+++||++|+|+..+..... +....++.|.++|+.|..... +. ..+.+++
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~--i~-~~~~~~~ 145 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTD--IL-QHFPEAI 145 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCcccc--HH-HHHHHHH
Confidence 47899999999999999999999999999999999998853321 222348999999999864432 21 2344444
Q ss_pred HHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHHcCc
Q 029149 119 KVVLD--ERNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIELFDI 183 (198)
Q Consensus 119 ~~i~~--~~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~ 183 (198)
++|.. ..++.|||||.+|.+||.+++.+|+|. .||+.++|++.+...+.. .. .|..|+.++..
T Consensus 146 ~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~-i~-PN~gf~~QL~~ 211 (285)
T KOG1716|consen 146 SFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPI-IS-PNFGFLRQLLE 211 (285)
T ss_pred HHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCc-cC-CCHHHHHHHHH
Confidence 44432 348999999999999999999999996 999999999966654443 32 36666665543
No 20
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.44 E-value=6.7e-13 Score=112.29 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=92.1
Q ss_pred ccccceEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhH-hCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 029149 44 IVDNGIFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLK-ANGIQLFQFGIDGCKEPFVNIPEETIREALKVVL 122 (198)
Q Consensus 44 ~V~~~Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~-~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~ 122 (198)
+|.|.||.|+.-+..+++-|+++||++|||+++.-+ ..++ ...+.|..+|+.|+.... ....+.+++.+|.
T Consensus 174 ~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlp-----n~fe~~g~f~YkqipisDh~Sqn---ls~ffpEAIsfId 245 (343)
T KOG1717|consen 174 EILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLP-----NNFENNGEFIYKQIPISDHASQN---LSQFFPEAISFID 245 (343)
T ss_pred hhccchhcccccccccHHHHHhcCceEEEecCCCCc-----chhhcCCceeEEeeeccchhhhh---hhhhhHHHHHHHH
Confidence 688999999999999999999999999999998642 2223 346789999999975431 1234556666665
Q ss_pred hc--CCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhcc
Q 029149 123 DE--RNHPLLIHCKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 123 ~~--~~~pVLVHC~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~ 168 (198)
+. ++-.|||||-+|++|+-+++++|||. ...+..+|++-+.+....
T Consensus 246 eArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksn 294 (343)
T KOG1717|consen 246 EARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSN 294 (343)
T ss_pred HhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccC
Confidence 53 46789999999999999999999995 899999998855554433
No 21
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.37 E-value=4.1e-12 Score=102.77 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=61.3
Q ss_pred hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHH
Q 029149 87 LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLD--ERNHPLLIHCKRGKHRTGCLVGCLRKL--QKWCLSSIFDEY 162 (198)
Q Consensus 87 ~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~--~~~~pVLVHC~aG~~RTG~v~a~yL~~--~g~~~~~a~~e~ 162 (198)
.+..|+.++++|+.|+..|. ..++.+++++|.+ ..++.|+|||.+|.+|||+++++|+|+ .++..+++++.+
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~----~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPD----LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred eccCCceeeeeeecCCCCCc----HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45789999999999998874 3555555555543 346799999999999999999999996 688888888877
Q ss_pred HHhhc
Q 029149 163 QRFAA 167 (198)
Q Consensus 163 ~~~~~ 167 (198)
++...
T Consensus 144 ~~~r~ 148 (180)
T COG2453 144 RRRRP 148 (180)
T ss_pred HhcCC
Confidence 76655
No 22
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.34 E-value=1.9e-11 Score=94.19 Aligned_cols=134 Identities=17% Similarity=0.270 Sum_probs=104.2
Q ss_pred eEecCCCCccc----HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHH--
Q 029149 49 IFRSGFPDSAN----FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVL-- 122 (198)
Q Consensus 49 Lyrs~~p~~~~----~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~-- 122 (198)
+...-.|+... ++.|+++|++|||-+++..+. ...+++.||..+..|.+|...|. .+.+.+++..+.
T Consensus 19 FLIThnPtnaTln~fieELkKygvttvVRVCe~TYd---t~~lek~GI~Vldw~f~dg~ppp----~qvv~~w~~l~~~~ 91 (173)
T KOG2836|consen 19 FLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYD---TTPLEKEGITVLDWPFDDGAPPP----NQVVDDWLSLVKTK 91 (173)
T ss_pred EEEecCCCchhHHHHHHHHHhcCCeEEEEecccccC---CchhhhcCceEeecccccCCCCc----hHHHHHHHHHHHHH
Confidence 34556666543 478999999999999987653 23368899999999999976552 445555666553
Q ss_pred --hcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhccccCccHHHHHHHcCcc-ccccc
Q 029149 123 --DERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDIS-SFKRL 189 (198)
Q Consensus 123 --~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~-~~~~~ 189 (198)
+..+.-|.|||.+|.||..+++|+.|+..|+-.++|.+-.+..+++.....+-.|+|.|-.. .|++.
T Consensus 92 f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krrga~n~kql~~lekyrpk~rlr~k 161 (173)
T KOG2836|consen 92 FREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRRGAINSKQLLYLEKYRPKMRLRFK 161 (173)
T ss_pred HhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhhccccHHHHHHHHHhCccceeecc
Confidence 34456799999999999999999999999999999998777777776667888999999885 55544
No 23
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.96 E-value=2.4e-09 Score=77.09 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=56.2
Q ss_pred eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcEEEEcCCCCChHHHHHHHHHHHC----C---CCHHHHHH
Q 029149 93 QLFQFGIDGCKEPFVNIPEETIREALKVVLDE-----RNHPLLIHCKRGKHRTGCLVGCLRKLQ----K---WCLSSIFD 160 (198)
Q Consensus 93 ~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~-----~~~pVLVHC~aG~~RTG~v~a~yL~~~----g---~~~~~a~~ 160 (198)
.|.+.++++...|. ..+.+.++++.+.+. .++||+|||.+|.+|||+++++|++.. + .+..+++.
T Consensus 4 ~~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (105)
T smart00012 4 HYHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVK 80 (105)
T ss_pred EEeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34556677766553 235566677666432 267999999999999999999999852 2 57778888
Q ss_pred HHHHhhccccCccHHHHH
Q 029149 161 EYQRFAAAKARLSDQRFI 178 (198)
Q Consensus 161 e~~~~~~~~~~~~~~~fI 178 (198)
.++..+.... ...++|.
T Consensus 81 ~ir~~r~~~~-~~~~q~~ 97 (105)
T smart00012 81 ELRKQRPGMV-QTFEQYL 97 (105)
T ss_pred HHHhhhhhhC-CcHHHHH
Confidence 8887666533 3445553
No 24
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.96 E-value=2.4e-09 Score=77.09 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=56.2
Q ss_pred eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcEEEEcCCCCChHHHHHHHHHHHC----C---CCHHHHHH
Q 029149 93 QLFQFGIDGCKEPFVNIPEETIREALKVVLDE-----RNHPLLIHCKRGKHRTGCLVGCLRKLQ----K---WCLSSIFD 160 (198)
Q Consensus 93 ~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~-----~~~pVLVHC~aG~~RTG~v~a~yL~~~----g---~~~~~a~~ 160 (198)
.|.+.++++...|. ..+.+.++++.+.+. .++||+|||.+|.+|||+++++|++.. + .+..+++.
T Consensus 4 ~~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (105)
T smart00404 4 HYHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVK 80 (105)
T ss_pred EEeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34556677766553 235566677666432 267999999999999999999999852 2 57778888
Q ss_pred HHHHhhccccCccHHHHH
Q 029149 161 EYQRFAAAKARLSDQRFI 178 (198)
Q Consensus 161 e~~~~~~~~~~~~~~~fI 178 (198)
.++..+.... ...++|.
T Consensus 81 ~ir~~r~~~~-~~~~q~~ 97 (105)
T smart00404 81 ELRKQRPGMV-QTFEQYL 97 (105)
T ss_pred HHHhhhhhhC-CcHHHHH
Confidence 8887666533 3445553
No 25
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.85 E-value=1.1e-08 Score=80.54 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=48.9
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCCChHHHHHHHHHHH
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDE-RNHPLLIHCKRGKHRTGCLVGCLRKL 150 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~-~~~pVLVHC~aG~~RTG~v~a~yL~~ 150 (198)
.+.+.++..|+.|+++|+.|...| .++.|.++++++.+. .+..+.|||.+|+|||.+++++|.++
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~~~P----~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDHQAP----DPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TTS-------HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCcCCC----CHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346678899999999999999887 478888899988764 35679999999999999988888764
No 26
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.58 E-value=2.5e-07 Score=76.76 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhc----CCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHH
Q 029149 112 ETIREALKVVLDE----RNHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRF 177 (198)
Q Consensus 112 ~~v~~~l~~i~~~----~~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~f 177 (198)
+.+.++++.+... ..+||+|||.+|.+|||+++|++++. ..++..+++..++..+...+ ...+||
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v-~~~~Qy 222 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMV-QTEEQY 222 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccc-CCHHHH
Confidence 5566677666543 36899999999999999999988763 25899999999988777633 344555
No 27
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.58 E-value=1.6e-07 Score=84.10 Aligned_cols=133 Identities=18% Similarity=0.249 Sum_probs=90.8
Q ss_pred cHHHHHhcC--CcEEEEcCCCC-CCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCcEEEE
Q 029149 59 NFSFLKSLG--LRSVIYLCPEP-YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLD---ERNHPLLIH 132 (198)
Q Consensus 59 ~~~~L~~~G--IktVInLr~e~-~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~---~~~~pVLVH 132 (198)
.+..|+++| +.-+|||.... +. .....+..|+.|+.+-..++..-......+.+.+.++...+ ..+.=|+||
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~ryy--~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vh 130 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLRYY--DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVH 130 (393)
T ss_pred HHHHHHhcCceEEEEEeccceeeee--ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEe
Confidence 456677665 56699998864 22 22334678999999888876531111112222222322222 224559999
Q ss_pred cCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHHcCcccccccCCCCcc
Q 029149 133 CKRGKHRTGCLVGCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIELFDISSFKRLPMSFSC 195 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~~~~~~~~~~~~ 195 (198)
|++|..|||.|+..||+. .+|+..+|++.|...+... ...+.||..+....=.+.|-+.||
T Consensus 131 cthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~g--i~k~dyi~~L~~~~~~~~p~~vs~ 192 (393)
T KOG2386|consen 131 CTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPG--IEKQDYIDALYSRYHDIFPFKVSC 192 (393)
T ss_pred CCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCc--cCchHHHHHHhhcccccccccccC
Confidence 999999999999999995 8899999999999988774 356777777777655666666666
No 28
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.51 E-value=3.6e-07 Score=83.18 Aligned_cols=135 Identities=23% Similarity=0.334 Sum_probs=89.6
Q ss_pred CccccccceEecCCCCcc-------c----HHHHHhc--CCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCC
Q 029149 41 NFAIVDNGIFRSGFPDSA-------N----FSFLKSL--GLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFV 107 (198)
Q Consensus 41 nf~~V~~~Lyrs~~p~~~-------~----~~~L~~~--GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~ 107 (198)
.+..|+..|..++.|... + +.+|... |=-.|.||+.+...+. .+..=+...++++|...|.
T Consensus 14 DltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~-----~~f~g~V~~~~~~Dh~~P~- 87 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDP-----SRFHGRVARFGFDDHNPPP- 87 (434)
T ss_pred cceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCc-----cccccceeecCCCCCCCCc-
Confidence 455678888888887642 2 2355533 4445999997653221 1222345558999988874
Q ss_pred CCCHHHHHHHHHHH---Hhc-CCCcEEEEcCCCCChHHHHHHHHHHHCCC--CHHHHHHHHHHhh---c---cccCccHH
Q 029149 108 NIPEETIREALKVV---LDE-RNHPLLIHCKRGKHRTGCLVGCLRKLQKW--CLSSIFDEYQRFA---A---AKARLSDQ 175 (198)
Q Consensus 108 ~~~~~~v~~~l~~i---~~~-~~~pVLVHC~aG~~RTG~v~a~yL~~~g~--~~~~a~~e~~~~~---~---~~~~~~~~ 175 (198)
.+.+..+.+.+ +.. ...-|.|||++|++|||+|+.+||+..|. +.++|++-|...+ . +.....+.
T Consensus 88 ---L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~ 164 (434)
T KOG2283|consen 88 ---LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQR 164 (434)
T ss_pred ---HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhh
Confidence 34444443333 222 34569999999999999999999997554 5788888776665 2 12345889
Q ss_pred HHHHHcCcc
Q 029149 176 RFIELFDIS 184 (198)
Q Consensus 176 ~fIe~~~~~ 184 (198)
+|+.+|..-
T Consensus 165 RYv~Y~~~~ 173 (434)
T KOG2283|consen 165 RYVGYFSRV 173 (434)
T ss_pred HHHHHHHHH
Confidence 999999873
No 29
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.48 E-value=6.7e-07 Score=75.54 Aligned_cols=67 Identities=19% Similarity=0.397 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHHH
Q 029149 111 EETIREALKVVLDER---NHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRFI 178 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~---~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~fI 178 (198)
.+.+.++++.+.... .+||+|||.+|.+|||+++|++++. ..++..+++..++..+...+ ...+||.
T Consensus 175 ~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v-~~~~Qy~ 250 (258)
T smart00194 175 PKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMV-QTEEQYI 250 (258)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccccc-CCHHHHH
Confidence 355666666654321 6899999999999999999998763 46899999999888777633 3445553
No 30
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.44 E-value=1.2e-06 Score=80.61 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=45.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHHHHhhccccCccHHHHHHHcCc
Q 029149 129 LLIHCKRGKHRTGCLVGCLRKL--QKWCLSSIFDEYQRFAAAKARLSDQRFIELFDI 183 (198)
Q Consensus 129 VLVHC~aG~~RTG~v~a~yL~~--~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~ 183 (198)
.+|||.+|.||||+++|++++. ...+.+++..++|..+.+...+..+||...+..
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~ 525 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAM 525 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHH
Confidence 3799999999999999999975 346999999999998887554678888776655
No 31
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.23 E-value=1.1e-05 Score=70.42 Aligned_cols=55 Identities=7% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHHHHHc
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRFIELF 181 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~ 181 (198)
.+||+|||.+|.||||+++|+...+ .-++..++...+|..+..-+ ...+||+--+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~V-qt~~QY~F~y 281 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCM-NCLDDYVFCY 281 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCcccc-CCHHHHHHHH
Confidence 5799999999999999999876642 46688888888888777643 3455554333
No 32
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.22 E-value=9.3e-06 Score=70.82 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHHHHHc
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRFIELF 181 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~ 181 (198)
.+||+|||.+|.||||+++|+...+ .-++..++...+|..+..-+ ...+||+-.+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~V-qt~~QY~F~y 289 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCL-SLPQQYIFCY 289 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhccccc-CCHHHHHHHH
Confidence 4799999999999999999877653 35577788888888776633 4555665433
No 33
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.08 E-value=2.1e-05 Score=68.94 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHHHH
Q 029149 127 HPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRFIE 179 (198)
Q Consensus 127 ~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~fIe 179 (198)
+||+|||.+|.||||+++|+...+ .-.+..++...+|..+..-+ ...+||+-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~V-qt~~QY~F 287 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGI-MNFDDYLF 287 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccc-CCHHHHHH
Confidence 799999999999999999887532 45688888888888766643 34445543
No 34
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.03 E-value=2.5e-05 Score=68.76 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=41.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHHHHHc
Q 029149 127 HPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRFIELF 181 (198)
Q Consensus 127 ~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~ 181 (198)
+||+|||.+|.||||+++|+...+ ...+..+++..+|..+..-+ ...+||.-.+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~V-qt~~QY~F~y 307 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSV-FLPEQYAFCY 307 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccC-CCHHHHHHHH
Confidence 799999999999999999876542 46788889888888777644 4555554444
No 35
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.99 E-value=2.2e-05 Score=64.31 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHh---cCCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHHH
Q 029149 111 EETIREALKVVLD---ERNHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRFI 178 (198)
Q Consensus 111 ~~~v~~~l~~i~~---~~~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~fI 178 (198)
.+.+.++++.+.. ....||+|||.+|.+|||+++++.++. ...+..+++..++..+...+ ...++|.
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i-~~~~qy~ 227 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAI-QSPEQYR 227 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSS-SSHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCcc-CCHHHHH
Confidence 3455556666643 246899999999999999999888863 35799999999888776643 3445553
No 36
>PHA02738 hypothetical protein; Provisional
Probab=97.97 E-value=4.4e-05 Score=67.11 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhccccCccHHHH
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAAKARLSDQRF 177 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~~~~~~~~~f 177 (198)
.+||+|||.+|.||||+++|+...+ .-.+..++...++..+..-+ ...+||
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~v-qt~~QY 283 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSL-FIPFQY 283 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhcc-CCHHHH
Confidence 4699999999999999998877642 46688888888888766643 333444
No 37
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.94 E-value=2.9e-05 Score=76.28 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc---CCCcEEEEcCCCCChHHHHH----HHHHHH--CCCCHHHHHHHHHHhhcccc
Q 029149 100 DGCKEPFVNIPEETIREALKVVLDE---RNHPLLIHCKRGKHRTGCLV----GCLRKL--QKWCLSSIFDEYQRFAAAKA 170 (198)
Q Consensus 100 ~~~~~p~~~~~~~~v~~~l~~i~~~---~~~pVLVHC~aG~~RTG~v~----a~yL~~--~g~~~~~a~~e~~~~~~~~~ 170 (198)
.|++.|. +.+.+.+|++.+-.. .+-||+|||.+|.||||+++ ++|++. +.++.-+++.-+|.-+..-+
T Consensus 1037 PDHg~P~---D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mV 1113 (1144)
T KOG0792|consen 1037 PDHGVPD---DPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMV 1113 (1144)
T ss_pred ccCCCCC---ChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc
Confidence 4444442 345555666666442 25599999999999999987 455554 56777888887777666533
Q ss_pred -CccHHHHHH
Q 029149 171 -RLSDQRFIE 179 (198)
Q Consensus 171 -~~~~~~fIe 179 (198)
...+-.|+-
T Consensus 1114 QT~~QYkFVy 1123 (1144)
T KOG0792|consen 1114 QTLSQYKFVY 1123 (1144)
T ss_pred cchHHhhHHH
Confidence 234555543
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.88 E-value=2.2e-05 Score=66.95 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEcCCCCChHHHHHHHHHHHC----------C--CCHHHHHHHHHHhhcc--ccCccHH
Q 029149 112 ETIREALKVVLDE--RNHPLLIHCKRGKHRTGCLVGCLRKLQ----------K--WCLSSIFDEYQRFAAA--KARLSDQ 175 (198)
Q Consensus 112 ~~v~~~l~~i~~~--~~~pVLVHC~aG~~RTG~v~a~yL~~~----------g--~~~~~a~~e~~~~~~~--~~~~~~~ 175 (198)
..+.++++.+... ..+|++|||.||.||||+++|+--+++ . .+.+-++.-+...+.. +..+...
T Consensus 202 ~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~ 281 (302)
T COG5599 202 RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKT 281 (302)
T ss_pred HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 4455577777643 578999999999999999998766541 1 2334444433333332 2234567
Q ss_pred HHHHHcCc
Q 029149 176 RFIELFDI 183 (198)
Q Consensus 176 ~fIe~~~~ 183 (198)
||+-.++.
T Consensus 282 Qf~flY~~ 289 (302)
T COG5599 282 QFKFLYDA 289 (302)
T ss_pred HHHHHHHH
Confidence 77666655
No 39
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.71 E-value=0.00056 Score=54.08 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=71.2
Q ss_pred HHHhcCCcEEEEcCCCCCCCchH-HHhHhCCceEEEeecCCCCCC---CCCCCHHHHHHHHHHHHh-cCCCcEEEEcCCC
Q 029149 62 FLKSLGLRSVIYLCPEPYPDSNL-EFLKANGIQLFQFGIDGCKEP---FVNIPEETIREALKVVLD-ERNHPLLIHCKRG 136 (198)
Q Consensus 62 ~L~~~GIktVInLr~e~~~~~~~-~~~~~~gI~~~~lpi~~~~~p---~~~~~~~~v~~~l~~i~~-~~~~pVLVHC~aG 136 (198)
+..+.|-+..|.|.........+ ....+ .++++-+.|-.+| ..-..++.+...++|+.+ ....|+||||.+|
T Consensus 27 ~~~rh~~t~mlsl~a~~t~~~~pa~~~~e---rhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aG 103 (172)
T COG5350 27 TAARHGPTHMLSLLAKGTYFHRPAVIAAE---RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAG 103 (172)
T ss_pred HHhhcCCceEEEeecccccccCccccchh---hceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccc
Confidence 44477899999999853211110 00001 2233333332111 112246788888888866 4468999999999
Q ss_pred CChHHHHHHH-HHH-HCCCCHHHHHHHHHHhhccccCccHHHHHHHcCcc
Q 029149 137 KHRTGCLVGC-LRK-LQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDIS 184 (198)
Q Consensus 137 ~~RTG~v~a~-yL~-~~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~ 184 (198)
.+||..++.. .|. ...++..+..+..+...+.. ..|...|..+|..
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~a--tPN~RliaI~d~~ 151 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYA--TPNPRLIAIADAA 151 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCccc--CCChhHHHHHHHH
Confidence 9999876643 233 36778888877666665542 2566677776654
No 40
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.00026 Score=62.82 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=49.4
Q ss_pred eecCCCCCCCCCCCHHHHHHH---HHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHC---CCCHHHHHH---HHHHhhc
Q 029149 97 FGIDGCKEPFVNIPEETIREA---LKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQ---KWCLSSIFD---EYQRFAA 167 (198)
Q Consensus 97 lpi~~~~~p~~~~~~~~v~~~---l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~---g~~~~~a~~---e~~~~~~ 167 (198)
..+.|.+.|. +.+.+.++ +...++....|++|||.+|.+|||+++|+-..++ .-...+++. +.+..+.
T Consensus 258 ~~wPd~gvp~---~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~ 334 (374)
T KOG0791|consen 258 TAWPDFGVPS---STESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARM 334 (374)
T ss_pred eeccccCCCC---CchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccc
Confidence 3455655552 22333334 4444445578999999999999999999988752 333444444 3333333
Q ss_pred cccCccHHHHHHHcCc
Q 029149 168 AKARLSDQRFIELFDI 183 (198)
Q Consensus 168 ~~~~~~~~~fIe~~~~ 183 (198)
- ..+..+||+-.++-
T Consensus 335 ~-mVqte~Qyvfl~~c 349 (374)
T KOG0791|consen 335 L-MVQTEDQYVFLHQC 349 (374)
T ss_pred c-ccchHHHHHHHHHH
Confidence 2 33566777665543
No 41
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.40 E-value=0.00018 Score=65.44 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=35.7
Q ss_pred eEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCcEEEEcCCCCChHHHHHHHHH
Q 029149 93 QLFQFGIDGCKEPFVNIPEETIREALKVVLD-----ERNHPLLIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 93 ~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~-----~~~~pVLVHC~aG~~RTG~v~a~yL 148 (198)
.|+.+-++|++.|. .+-.+..||+.+-. .+-+||.|||.+|++|||+++.+-.
T Consensus 416 ~yh~~tWPDHGvP~---dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~ 473 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPS---DPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDM 473 (600)
T ss_pred hhheeecccCCCcC---CccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHH
Confidence 34445666776653 34456667777642 1357999999999999999764433
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.21 E-value=0.0016 Score=58.19 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHH---H-C---CCCHHHHHHHHHHhhccccCccHHHHHH
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRK---L-Q---KWCLSSIFDEYQRFAAAKARLSDQRFIE 179 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~---~-~---g~~~~~a~~e~~~~~~~~~~~~~~~fIe 179 (198)
..+|+.|||.+|.||||+++++-.+ + . .-+..+++...+.-+...+ ....||.-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~v-qt~~Qy~f 358 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAV-QSPLQYLF 358 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcc-cchhHHHH
Confidence 4689999999999999999976633 2 2 2346666665555533322 44555533
No 43
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.99 E-value=0.0007 Score=67.16 Aligned_cols=82 Identities=17% Similarity=0.307 Sum_probs=47.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhc---CCCcEEEEcCCCCChHHHHHHH---HHHHCCCCHHHHHHHHHHhhcc--cc
Q 029149 99 IDGCKEPFVNIPEETIREALKVVLDE---RNHPLLIHCKRGKHRTGCLVGC---LRKLQKWCLSSIFDEYQRFAAA--KA 170 (198)
Q Consensus 99 i~~~~~p~~~~~~~~v~~~l~~i~~~---~~~pVLVHC~aG~~RTG~v~a~---yL~~~g~~~~~a~~e~~~~~~~--~~ 170 (198)
++|++.|. ....+.+|++.+..- ..+|++|||.+|.||||+++++ +.+++.-...+++.-....+.. ..
T Consensus 703 Wpd~gvPe---~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPE---TPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCcc---cchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 45555443 234455566666442 3599999999999999997743 3333333333444333332222 23
Q ss_pred CccHHHHHHHcCc
Q 029149 171 RLSDQRFIELFDI 183 (198)
Q Consensus 171 ~~~~~~fIe~~~~ 183 (198)
.+..+|||-.++.
T Consensus 780 VQt~eQYiFi~~A 792 (1087)
T KOG4228|consen 780 VQTEEQYIFIHEA 792 (1087)
T ss_pred cccHHHHHHHHHH
Confidence 3566788776654
No 44
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=95.91 E-value=0.046 Score=39.22 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=21.3
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 124 ERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..+++|+|+|.+|. |+...+ .+|..+|.+
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a~-~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKAS-AYLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCch-hHHHHH-HHHHHhCCc
Confidence 35789999999997 887554 455667765
No 45
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.80 E-value=0.018 Score=55.23 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=35.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHH----HHCCCCHHHHHHHHHHhhcc--ccCccHHHH
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLR----KLQKWCLSSIFDEYQRFAAA--KARLSDQRF 177 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL----~~~g~~~~~a~~e~~~~~~~--~~~~~~~~f 177 (198)
.-||+|||..|.||||+-+++-+ |..|.-.-+|.+.....+.. +.....+||
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQF 984 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQF 984 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhh
Confidence 45899999999999999775544 45788666666655554433 233455555
No 46
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=95.73 E-value=0.12 Score=38.13 Aligned_cols=84 Identities=11% Similarity=-0.060 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCC-CchHHHhHhCCc-eEEEeecCCCCCC---C--CCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHH
Q 029149 69 RSVIYLCPEPYP-DSNLEFLKANGI-QLFQFGIDGCKEP---F--VNIPEETIREALKVVLDERNHPLLIHCKRGKHRTG 141 (198)
Q Consensus 69 ktVInLr~e~~~-~~~~~~~~~~gI-~~~~lpi~~~~~p---~--~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG 141 (198)
-.|||+|+.... ....++ +..-| .-+++|..+.... . .-.+.+.+.+++....-..+.+|+|+|..| ++.+
T Consensus 16 ~~ivDvR~~~~~~~~~~~~-~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a 93 (122)
T cd01448 16 VRILDARWYLPDRDGRKEY-LEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDTVVVYDDGG-GFFA 93 (122)
T ss_pred eEEEEeecCCCCCchhhHH-hhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEECCCC-CccH
Confidence 469999986321 111122 22222 3355665432110 0 012345566565543223578999999997 3445
Q ss_pred HHHHHHHHHCCCC
Q 029149 142 CLVGCLRKLQKWC 154 (198)
Q Consensus 142 ~v~a~yL~~~g~~ 154 (198)
..++.+|...|++
T Consensus 94 ~~~~~~l~~~G~~ 106 (122)
T cd01448 94 ARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCC
Confidence 5556666677776
No 47
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=95.49 E-value=0.068 Score=38.91 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 112 ETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..+.+.+..+...++.||+|||.+|. |+.. ++..|...|.+
T Consensus 52 ~~l~~~~~~l~~~~~~~ivv~C~~G~-rs~~-a~~~L~~~G~~ 92 (109)
T cd01533 52 AELVLRVGELAPDPRTPIVVNCAGRT-RSII-GAQSLINAGLP 92 (109)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCc-hHHH-HHHHHHHCCCC
Confidence 34444454443334689999999998 8744 45666667874
No 48
>PLN02160 thiosulfate sulfurtransferase
Probab=95.03 E-value=0.11 Score=39.95 Aligned_cols=99 Identities=9% Similarity=0.085 Sum_probs=49.5
Q ss_pred cccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCc---eEEEeecCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcEEEE
Q 029149 57 SANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGI---QLFQFGIDGCKEPFVNI-PEETIREALKVVLDERNHPLLIH 132 (198)
Q Consensus 57 ~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI---~~~~lpi~~~~~p~~~~-~~~~v~~~l~~i~~~~~~pVLVH 132 (198)
+.++..+.+.+ ..|||+|+.... ....| ..+++|+.... +.-.+ +.+.+.+ +...++ .+++|++|
T Consensus 19 ~~e~~~~~~~~-~~lIDVR~~~E~-------~~ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~-~~~~~~-~~~~Iivy 87 (136)
T PLN02160 19 VSQAKTLLQSG-HQYLDVRTQDEF-------RRGHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQ-VSSLLN-PADDILVG 87 (136)
T ss_pred HHHHHHHHhCC-CEEEECCCHHHH-------hcCCCCCcceecccchhcC-cccccCCHHHHHH-HHhccC-CCCcEEEE
Confidence 34555544456 379999986411 11112 23556653211 00011 1222222 222223 46899999
Q ss_pred cCCCCChHHHHHHHHHHHCCCC----HHHHHHHHHHhhcc
Q 029149 133 CKRGKHRTGCLVGCLRKLQKWC----LSSIFDEYQRFAAA 168 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~~~g~~----~~~a~~e~~~~~~~ 168 (198)
|.+|. |+...+ ..|..+|.+ .+.-+.++...+.+
T Consensus 88 C~sG~-RS~~Aa-~~L~~~G~~~v~~l~GG~~~W~~~g~p 125 (136)
T PLN02160 88 CQSGA-RSLKAT-TELVAAGYKKVRNKGGGYLAWVDHSFP 125 (136)
T ss_pred CCCcH-HHHHHH-HHHHHcCCCCeeecCCcHHHHhhCCCC
Confidence 99997 887664 444556764 33444555544443
No 49
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=94.35 E-value=0.36 Score=34.32 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.++||+|+|.+|. |+.. ++..|..+|.+
T Consensus 60 ~~~~ivv~C~~G~-rs~~-aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEG-SSQF-VAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCC-cHHH-HHHHHHHcCce
Confidence 4789999999997 7754 44455567775
No 50
>PRK01415 hypothetical protein; Validated
Probab=94.24 E-value=0.21 Score=42.54 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=21.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+++|+++|++|. |+- .++.+|..+|..
T Consensus 170 k~k~Iv~yCtgGi-Rs~-kAa~~L~~~Gf~ 197 (247)
T PRK01415 170 KGKKIAMVCTGGI-RCE-KSTSLLKSIGYD 197 (247)
T ss_pred CCCeEEEECCCCh-HHH-HHHHHHHHcCCC
Confidence 5789999999998 864 455666777775
No 51
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=0.067 Score=50.55 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=21.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHH
Q 029149 124 ERNHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
....||||||..|.|||.-++++...
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHH
Confidence 45789999999999999998866554
No 52
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=94.02 E-value=0.25 Score=37.10 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHHHHhcCCcEEEEcCCCCC------C-CchHHHhHhCCceEEEeec
Q 029149 60 FSFLKSLGLRSVIYLCPEPY------P-DSNLEFLKANGIQLFQFGI 99 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~------~-~~~~~~~~~~gI~~~~lpi 99 (198)
+..|+..||+.|||+|.-+. . ..+...++..||.|+|+|-
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 45788999999999997543 1 2345667789999999875
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.41 Score=34.19 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCce-EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQ-LFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~-~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
..+...+--.|||+|+... +...+-.. ..++|+.....- .. ... ..+.++++|+|.+|. |
T Consensus 13 ~~~~~~~~~~liDvR~~~e------~~~~~i~~~~~~ip~~~~~~~--------~~-~~~---~~~~~~ivv~C~~G~-r 73 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEE------YERGHIPGAAINIPLSELKAA--------EN-LLE---LPDDDPIVVYCASGV-R 73 (110)
T ss_pred HHhhccCCCEEEeccChhH------hhhcCCCcceeeeecccchhh--------hc-ccc---cCCCCeEEEEeCCCC-C
Confidence 4445566788999998631 11112223 777887764211 00 000 345889999999999 8
Q ss_pred HHHHHHHHHHHCCCCHH
Q 029149 140 TGCLVGCLRKLQKWCLS 156 (198)
Q Consensus 140 TG~v~a~yL~~~g~~~~ 156 (198)
+ ..++.+|..+|.+..
T Consensus 74 S-~~aa~~L~~~G~~~~ 89 (110)
T COG0607 74 S-AAAAAALKLAGFTNV 89 (110)
T ss_pred h-HHHHHHHHHcCCccc
Confidence 7 455566666665443
No 54
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=93.19 E-value=0.38 Score=34.34 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCCchHHHhHhCCc-eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHH
Q 029149 69 RSVIYLCPEPYPDSNLEFLKANGI-QLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCL 147 (198)
Q Consensus 69 ktVInLr~e~~~~~~~~~~~~~gI-~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~y 147 (198)
-.|||+|+... + +..-| .-+++|+...... .....+.+.+.+......++.+|+++|..|. |+. .++.+
T Consensus 16 ~~iiDvR~~~e------~-~~ghIpgA~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~-~~~~~ 85 (106)
T cd01519 16 KVLIDVREPEE------L-KTGKIPGAINIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGV-RSK-AAAEL 85 (106)
T ss_pred EEEEECCCHHH------H-hcCcCCCcEEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcH-HHH-HHHHH
Confidence 56999998531 1 11111 1244555432111 0123444555544332234789999999987 654 44555
Q ss_pred HHHCCCC
Q 029149 148 RKLQKWC 154 (198)
Q Consensus 148 L~~~g~~ 154 (198)
|...|..
T Consensus 86 l~~~G~~ 92 (106)
T cd01519 86 ARSLGYE 92 (106)
T ss_pred HHHcCCc
Confidence 6667765
No 55
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=93.03 E-value=0.19 Score=44.88 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=21.7
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHH
Q 029149 124 ERNHPLLIHCKRGKHRTGCLVGCLRKL 150 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~RTG~v~a~yL~~ 150 (198)
..+.+|||||..|.|||..++++..++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHHH
Confidence 457899999999999999998877753
No 56
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=92.63 E-value=0.62 Score=43.08 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=57.9
Q ss_pred cccceEecCCCCcccH--HHH--HhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHH
Q 029149 45 VDNGIFRSGFPDSANF--SFL--KSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKV 120 (198)
Q Consensus 45 V~~~Lyrs~~p~~~~~--~~L--~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~ 120 (198)
++++||.|.-.....+ ... ....+..||++.+..... ........++|+|+...+.--. .-...+.+++.+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~-~LR~~LP~i~~f 366 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSR-DLRKALPKICSF 366 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHH-HHHHHHHHHHHH
Confidence 5667777766552211 122 245688999998875321 1124567899999987653210 001222222333
Q ss_pred HH---hc-CCCcEEEEcCCCCChHHHHHHHHHH
Q 029149 121 VL---DE-RNHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 121 i~---~~-~~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
+. .. .+++|+|+|..|+|.+-.++.++|.
T Consensus 367 v~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc 399 (451)
T PF04179_consen 367 VRSHLSSDPGKPILVCCDSGKDLSVGVALAILC 399 (451)
T ss_pred HHHHhcccCCCcEEEEcCCcchHHHHHHHHHHH
Confidence 32 22 3789999999999987666655543
No 57
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=92.53 E-value=1.6 Score=30.88 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=43.7
Q ss_pred ccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHh--cCCCcEEEEcCC
Q 029149 58 ANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLD--ERNHPLLIHCKR 135 (198)
Q Consensus 58 ~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~--~~~~pVLVHC~a 135 (198)
+++..+...+=-.|||.|+.. ++.+.+=-.-+++|.............+.+...+..... ....+|+++|..
T Consensus 3 ~el~~~l~~~~~~liD~R~~~------~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~ 76 (113)
T PF00581_consen 3 EELKEMLENESVLLIDVRSPE------EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS 76 (113)
T ss_dssp HHHHHHHTTTTEEEEEESSHH------HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred HHHHhhhhCCCeEEEEeCCHH------HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeec
Confidence 344333344556799999643 222222223577887432111111234445444444433 346789999987
Q ss_pred CCChHHHHHHH
Q 029149 136 GKHRTGCLVGC 146 (198)
Q Consensus 136 G~~RTG~v~a~ 146 (198)
|. |++.++++
T Consensus 77 ~~-~~~~~~~~ 86 (113)
T PF00581_consen 77 GW-RSGSAAAA 86 (113)
T ss_dssp SC-HHHHHHHH
T ss_pred cc-ccchhHHH
Confidence 77 77776665
No 58
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=91.84 E-value=0.77 Score=40.37 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
++++|+|||++|. |+... +.+|..+|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~~a-a~~L~~~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEKA-SAWMKHEGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHHH-HHHHHHcCCC
Confidence 4789999999998 88654 5566667875
No 59
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=91.50 E-value=1.5 Score=30.00 Aligned_cols=30 Identities=17% Similarity=0.475 Sum_probs=19.6
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCCH
Q 029149 124 ERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCL 155 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~ 155 (198)
..+.+|+|+|..|. |+ ..++.+|...|.+.
T Consensus 54 ~~~~~iv~~c~~g~-~a-~~~~~~l~~~G~~~ 83 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS-AKAAWLLRELGFKN 83 (100)
T ss_pred CCCCeEEEEeCCCc-HH-HHHHHHHHHcCCCc
Confidence 45789999997666 65 44455555566653
No 60
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=91.35 E-value=0.92 Score=32.29 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=24.5
Q ss_pred HHHHHHHHHHh-cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 113 TIREALKVVLD-ERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 113 ~v~~~l~~i~~-~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+.++.+.. ..++||+++|..|. |+... +.+|...|.+
T Consensus 44 ~~~~~~~~~~~~~~~~~vv~~c~~g~-rs~~~-~~~l~~~G~~ 84 (101)
T cd01528 44 EIPERSKELDSDNPDKDIVVLCHHGG-RSMQV-AQWLLRQGFE 84 (101)
T ss_pred HHHHHHHHhcccCCCCeEEEEeCCCc-hHHHH-HHHHHHcCCc
Confidence 34344444432 24789999999986 76444 5555557775
No 61
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=90.94 E-value=1.2 Score=34.53 Aligned_cols=76 Identities=8% Similarity=0.003 Sum_probs=41.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCc-eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGI-QLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI-~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
...|...|=...||+|.-+. ++..++ .-+++|.-...... .+....+.+.+........+.|.|||.+|+
T Consensus 30 vk~L~~~~~~~llDVRepeE-------fk~gh~~~siNiPy~~~~~~~-~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~- 100 (136)
T KOG1530|consen 30 VKNLLQHPDVVLLDVREPEE-------FKQGHIPASINIPYMSRPGAG-ALKNPEFLKQVGSSKPPHDKEIIFGCASGV- 100 (136)
T ss_pred HHHHhcCCCEEEEeecCHHH-------hhccCCcceEecccccccccc-ccCCHHHHHHhcccCCCCCCcEEEEeccCc-
Confidence 34455566688999997431 122222 45666764322111 122233333444433344568999999999
Q ss_pred hHHHHH
Q 029149 139 RTGCLV 144 (198)
Q Consensus 139 RTG~v~ 144 (198)
|+....
T Consensus 101 Rs~~A~ 106 (136)
T KOG1530|consen 101 RSLKAT 106 (136)
T ss_pred chhHHH
Confidence 875443
No 62
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=90.80 E-value=0.9 Score=32.02 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+|+++|.+|. |+.. ++.+|...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHHHHcCCE
Confidence 3679999999998 7654 34455667764
No 63
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=90.54 E-value=0.38 Score=45.45 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.2
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHHC
Q 029149 123 DERNHPLLIHCKRGKHRTGCLVGCLRKLQ 151 (198)
Q Consensus 123 ~~~~~pVLVHC~aG~~RTG~v~a~yL~~~ 151 (198)
+..+-+|||||..|.|||..++++..++.
T Consensus 341 ~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 341 SSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 34468999999999999999998877643
No 64
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=90.38 E-value=0.31 Score=49.00 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHHhhcc
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKL------QKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~------~g~~~~~a~~e~~~~~~~ 168 (198)
.+|+.|||..|.+|||+++|+-..+ +-++.-++.+-++.....
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~ 1066 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPG 1066 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCcc
Confidence 7999999999999999999877653 234555555544444433
No 65
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=89.99 E-value=1.4 Score=32.60 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=20.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~ 153 (198)
.+++|+++|.+|. |+. .++.+|...|.
T Consensus 71 ~~~~ivv~C~~G~-rs~-~aa~~L~~~G~ 97 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQ-TAVRKLKELGL 97 (122)
T ss_pred CCCcEEEECCCCC-cHH-HHHHHHHHcCC
Confidence 4789999999996 764 44556666787
No 66
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=89.39 E-value=1.4 Score=37.25 Aligned_cols=92 Identities=20% Similarity=0.355 Sum_probs=63.2
Q ss_pred cHHHHHhcCCcEEEEcCCCC--CCCchHHHhHhCCceEEEe---ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 029149 59 NFSFLKSLGLRSVIYLCPEP--YPDSNLEFLKANGIQLFQF---GIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHC 133 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~--~~~~~~~~~~~~gI~~~~l---pi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC 133 (198)
=++.|+.+|++.|-=+++-. ....+.+++++.|++...+ .+.+... ...++++.+.+++..+....-..|++=|
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifisC 189 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFLSC 189 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEEeC
Confidence 35788999999999999854 2346788899999998775 4443322 2245678888888777555567899999
Q ss_pred CCCCChHHHHHHHHHHHCCC
Q 029149 134 KRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 134 ~aG~~RTG~v~a~yL~~~g~ 153 (198)
+. . ||--++.-+-...|.
T Consensus 190 Tn-L-rt~~vi~~lE~~lGk 207 (239)
T TIGR02990 190 TA-L-RAATCAQRIEQAIGK 207 (239)
T ss_pred CC-c-hhHHHHHHHHHHHCC
Confidence 74 2 555555544444454
No 67
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.59 E-value=1.3 Score=39.89 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..||+|||.+|. |+.. ++.+|..+|++
T Consensus 332 ~~~Ivv~C~sG~-RS~~-Aa~~L~~~G~~ 358 (370)
T PRK05600 332 GDNVVVYCASGI-RSAD-FIEKYSHLGHE 358 (370)
T ss_pred CCcEEEECCCCh-hHHH-HHHHHHHcCCC
Confidence 349999999998 8765 45556667764
No 68
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=87.88 E-value=3.6 Score=28.94 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
+.++|+++|..|. |+..+ +..|..+|..
T Consensus 53 ~~~~iv~~c~~g~-~s~~~-~~~L~~~g~~ 80 (99)
T cd01527 53 GANAIIFHCRSGM-RTQQN-AERLAAISAG 80 (99)
T ss_pred CCCcEEEEeCCCc-hHHHH-HHHHHHcCCc
Confidence 4689999999987 76544 3334444543
No 69
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=87.69 E-value=2.5 Score=30.41 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 112 ETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..+.+++..+ + .+++++|+|..|. |+ ..++..|...|++
T Consensus 46 ~~l~~~~~~~-~-~~~~ivv~c~~g~-~s-~~a~~~L~~~G~~ 84 (108)
T PRK00162 46 DSLGAFMRQA-D-FDTPVMVMCYHGN-SS-QGAAQYLLQQGFD 84 (108)
T ss_pred HHHHHHHHhc-C-CCCCEEEEeCCCC-CH-HHHHHHHHHCCch
Confidence 3455555443 3 4789999999987 65 4445566667775
No 70
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=87.58 E-value=4.8 Score=29.66 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..++|+++|.+|. |+..++ .+|...|.+
T Consensus 63 ~~~~ivv~C~~G~-rs~~aa-~~L~~~G~~ 90 (117)
T cd01522 63 KDRPVLLLCRSGN-RSIAAA-EAAAQAGFT 90 (117)
T ss_pred CCCeEEEEcCCCc-cHHHHH-HHHHHCCCC
Confidence 5789999999996 776554 444555654
No 71
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=87.20 E-value=0.42 Score=41.96 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=53.8
Q ss_pred cHHHHHhcCCcEEEEcCCCCC---CCchHHHhHhCCceEEEe---ec----------------------------CCCC-
Q 029149 59 NFSFLKSLGLRSVIYLCPEPY---PDSNLEFLKANGIQLFQF---GI----------------------------DGCK- 103 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~~---~~~~~~~~~~~gI~~~~l---pi----------------------------~~~~- 103 (198)
++..++++|.+|||+.++-.. ...+++..++.|+..+-- .. ++..
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~i 122 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGI 122 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCcc
Confidence 567888999999999998542 223455566677766541 00 1000
Q ss_pred CC--------CCCCC--HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHH
Q 029149 104 EP--------FVNIP--EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSI 158 (198)
Q Consensus 104 ~p--------~~~~~--~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a 158 (198)
.| ...++ ++.+-++........+-||.+||..|. |.|.-.+-+|...|++++.+
T Consensus 123 kaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rv 186 (308)
T PF02126_consen 123 KAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRV 186 (308)
T ss_dssp -ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGE
T ss_pred chhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHe
Confidence 00 00122 233333333333334789999998887 57888888887777766443
No 72
>PRK09875 putative hydrolase; Provisional
Probab=87.13 E-value=2.9 Score=36.42 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=26.2
Q ss_pred cHHHHHhcCCcEEEEcCCCCC---CCchHHHhHhCCceEEE
Q 029149 59 NFSFLKSLGLRSVIYLCPEPY---PDSNLEFLKANGIQLFQ 96 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~~---~~~~~~~~~~~gI~~~~ 96 (198)
++..++++|.+|||+.++... +..+++..++.|++.+-
T Consensus 39 el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~ 79 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVA 79 (292)
T ss_pred HHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEE
Confidence 567788999999999998642 22345555666665543
No 73
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=86.93 E-value=1.9 Score=31.43 Aligned_cols=41 Identities=15% Similarity=0.362 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 112 ETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..+.+.+..+....+.+|+++|.+|. |+... +.+|...|.+
T Consensus 44 ~~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~a-a~~L~~~G~~ 84 (101)
T TIGR02981 44 KEIKEHIATAVPDKNDTVKLYCNAGR-QSGMA-KDILLDMGYT 84 (101)
T ss_pred HHHHHHHHHhCCCCCCeEEEEeCCCH-HHHHH-HHHHHHcCCC
Confidence 34544454443334678999999997 76555 4455556764
No 74
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=86.80 E-value=1.1 Score=32.55 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+.+.+..+.-.++.+|+++|..|. |+..+ +.+|...|.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~-~s~~~-~~~l~~~G~~ 104 (118)
T cd01449 63 PEELRALFAALGITPDKPVIVYCGSGV-TACVL-LLALELLGYK 104 (118)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCcHH-HHHHH-HHHHHHcCCC
Confidence 344554544432234789999999876 66554 4444556664
No 75
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=85.07 E-value=6.3 Score=34.71 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=24.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHH
Q 029149 124 ERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSI 158 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a 158 (198)
..+-|+.+|=.+|. .|.=.+-++...|++++.+
T Consensus 163 ~Tg~Pi~tHt~~gt--~g~eq~~il~~egvdl~~v 195 (316)
T COG1735 163 ETGAPISTHTPAGT--MGLEQLRILAEEGVDLRKV 195 (316)
T ss_pred hcCCCeEEeccchh--hhHHHHHHHHHcCCChhHe
Confidence 34789999999988 6776666776678777654
No 76
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=84.64 E-value=2 Score=33.53 Aligned_cols=40 Identities=8% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCCh----HHHHHHHHHHH-CCCCHHHHHHHHHHh
Q 029149 126 NHPLLIHCKRGKHR----TGCLVGCLRKL-QKWCLSSIFDEYQRF 165 (198)
Q Consensus 126 ~~pVLVHC~aG~~R----TG~v~a~yL~~-~g~~~~~a~~e~~~~ 165 (198)
.+..+|||++.-.+ +..++++|+++ +||++++|++-+...
T Consensus 66 ~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~ 110 (141)
T PF14671_consen 66 KKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASI 110 (141)
T ss_dssp TTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTT
T ss_pred cCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence 46778888876553 45677888886 999999998755443
No 77
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=83.94 E-value=5.2 Score=29.05 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 029149 125 RNHPLLIHCKRGKHRTGCLV 144 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~ 144 (198)
...+|++||..|-.|+..++
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 45789999997544755444
No 78
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=83.38 E-value=5.2 Score=27.68 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=18.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~ 153 (198)
.+++|+++|..|. |+ ..++..|+..|.
T Consensus 50 ~~~~vvl~c~~g~-~a-~~~a~~L~~~G~ 76 (90)
T cd01524 50 KDKEIIVYCAVGL-RG-YIAARILTQNGF 76 (90)
T ss_pred CCCcEEEEcCCCh-hH-HHHHHHHHHCCC
Confidence 3679999999875 54 444555555665
No 79
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.92 E-value=5.8 Score=33.29 Aligned_cols=93 Identities=25% Similarity=0.326 Sum_probs=62.4
Q ss_pred ccHHHHHhcCCcEEEEcCCC--CCCCchHHHhHhCCceEEEe---ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 029149 58 ANFSFLKSLGLRSVIYLCPE--PYPDSNLEFLKANGIQLFQF---GIDGCKEPFVNIPEETIREALKVVLDERNHPLLIH 132 (198)
Q Consensus 58 ~~~~~L~~~GIktVInLr~e--~~~~~~~~~~~~~gI~~~~l---pi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVH 132 (198)
+-++.|+.+|++.|.=|++- +....+.++++++|++.+.+ .+.|+-+- -.+++..+.++.+.+....-..+++-
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~ei-gr~~P~~~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEI-GRQEPWAVYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchh-cccChHHHHHHHHHhcCCCCCeEEEE
Confidence 35788999999999999985 34567889999999998874 45554221 02334445545555555555679999
Q ss_pred cCCCCChHHHHHHHHHHHCCC
Q 029149 133 CKRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~~~g~ 153 (198)
|+. -||--++..+-..-|.
T Consensus 187 CTn--lRt~eii~~lE~~~G~ 205 (238)
T COG3473 187 CTN--LRTFEIIEKLERDTGV 205 (238)
T ss_pred eec--cccHHHHHHHHHHhCC
Confidence 985 2665555555555555
No 80
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=81.90 E-value=17 Score=28.54 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
++.+|+++|.+|..|+.. ++..|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~-aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN-AAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHH-HHHHHHhcCCc
Confidence 578999999998756554 44444556654
No 81
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=81.30 E-value=4.8 Score=29.46 Aligned_cols=42 Identities=12% Similarity=0.345 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCH
Q 029149 112 ETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCL 155 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~ 155 (198)
.++.+.+..+....+.+|+++|.+|. |+..++ ..|...|.+.
T Consensus 46 ~~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa-~~L~~~G~~~ 87 (104)
T PRK10287 46 KEVKERIATAVPDKNDTVKLYCNAGR-QSGQAK-EILSEMGYTH 87 (104)
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHH-HHHHHcCCCe
Confidence 34544554443234678999999885 766554 4444566643
No 82
>PRK05320 rhodanese superfamily protein; Provisional
Probab=81.05 E-value=3.6 Score=35.10 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=21.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
+++||+++|++|. |+..+ +.+|..+|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~A-a~~L~~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKA-AIHMQEVGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHHcCCc
Confidence 4789999999998 87554 5556667774
No 83
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=80.83 E-value=8.8 Score=34.24 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=19.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
++.+|+|+|..|-.|++.++. +|...|+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~-~L~~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQ-WLKEAGID 115 (345)
T ss_pred CCCeEEEEECCCChHHHHHHH-HHHHcCCC
Confidence 578999999654449887654 44456764
No 84
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=79.29 E-value=1.7 Score=40.42 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=15.8
Q ss_pred EEEcCCCCChHHHHHHHHH
Q 029149 130 LIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 130 LVHC~aG~~RTG~v~a~yL 148 (198)
...|++|+||||++=+-.-
T Consensus 460 ~wNCkSGKDRTGmmD~eiK 478 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEIK 478 (564)
T ss_pred eeccCCCCccccchHHHHH
Confidence 7899999999998865543
No 85
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=78.73 E-value=4 Score=34.74 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=51.9
Q ss_pred EecCCC-CcccH-HHHHhcCCcEEEEcCCCC---CCCchHHHhHhCCceEEEeecCCCCC-CCCC-CCHHHHHHHHHHHH
Q 029149 50 FRSGFP-DSANF-SFLKSLGLRSVIYLCPEP---YPDSNLEFLKANGIQLFQFGIDGCKE-PFVN-IPEETIREALKVVL 122 (198)
Q Consensus 50 yrs~~p-~~~~~-~~L~~~GIktVInLr~e~---~~~~~~~~~~~~gI~~~~lpi~~~~~-p~~~-~~~~~v~~~l~~i~ 122 (198)
.+.|.. +..++ ++|++.||+.|||.+.-- .+....++|++.||.|+++-=+.... +... ...+.+.++++.+.
T Consensus 47 v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~ 126 (249)
T PF02571_consen 47 VRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLK 126 (249)
T ss_pred EEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHh
Confidence 456666 77777 578899999999998741 23456778899999999863221110 0000 11244666777765
Q ss_pred hcCCCcEEE
Q 029149 123 DERNHPLLI 131 (198)
Q Consensus 123 ~~~~~pVLV 131 (198)
+...+.|++
T Consensus 127 ~~~~~~ifl 135 (249)
T PF02571_consen 127 ELGGGRIFL 135 (249)
T ss_pred hcCCCCEEE
Confidence 544478887
No 86
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=77.59 E-value=2.7 Score=31.40 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=16.8
Q ss_pred CCCcEEEEcC-CCCChHHHHHHHHH
Q 029149 125 RNHPLLIHCK-RGKHRTGCLVGCLR 148 (198)
Q Consensus 125 ~~~pVLVHC~-aG~~RTG~v~a~yL 148 (198)
++.+|++||. +|. |+..++..+.
T Consensus 67 ~~~~vv~yC~~sg~-rs~~aa~~L~ 90 (121)
T cd01530 67 KRRVLIFHCEFSSK-RGPRMARHLR 90 (121)
T ss_pred CCCEEEEECCCccc-cHHHHHHHHH
Confidence 4789999997 776 8766655444
No 87
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.33 E-value=21 Score=29.62 Aligned_cols=81 Identities=17% Similarity=0.038 Sum_probs=51.3
Q ss_pred HHHHHhcCCcEEEEcCC-CC--CC----CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEE
Q 029149 60 FSFLKSLGLRSVIYLCP-EP--YP----DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLI 131 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~-e~--~~----~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLV 131 (198)
++.+++.|+...+++.. .. .. ....+.+.+.|...+.++=... ..+++++.+.++.+.+..+ -++-+
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G-----~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG-----LATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC-----CcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 45678899999999843 22 11 1233445678888777542221 1357888888888876433 78999
Q ss_pred EcCCCCChHHHHHHHHH
Q 029149 132 HCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 132 HC~aG~~RTG~v~a~yL 148 (198)
||+.-. |+.+|-++
T Consensus 196 H~Hn~~---gla~an~l 209 (265)
T cd03174 196 HTHNTL---GLAVANSL 209 (265)
T ss_pred EeCCCC---ChHHHHHH
Confidence 998755 44444444
No 88
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.10 E-value=8.5 Score=34.40 Aligned_cols=40 Identities=13% Similarity=0.328 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 113 TIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 113 ~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+.+..+....+++|+++|..|. |+.. ++.+|...|.+
T Consensus 44 ~l~~~~~~~~~~~~~~IvvyC~~G~-rs~~-aa~~L~~~G~~ 83 (376)
T PRK08762 44 FLELRIETHLPDRDREIVLICASGT-RSAH-AAATLRELGYT 83 (376)
T ss_pred HHHHHHhhhcCCCCCeEEEEcCCCc-HHHH-HHHHHHHcCCC
Confidence 3444444333234789999999887 7654 44555556664
No 89
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=73.97 E-value=9.7 Score=29.91 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=41.3
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecC
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGID 100 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~ 100 (198)
||.+-.|-.+=...|...||+.|+.......+....+++++.||+..+++.+
T Consensus 90 lYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~~~ 141 (151)
T TIGR02571 90 IYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVPFD 141 (151)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeCcc
Confidence 8999999888778888999999999754332233567889999999999854
No 90
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.39 E-value=20 Score=30.26 Aligned_cols=81 Identities=15% Similarity=0.248 Sum_probs=47.5
Q ss_pred HHHHHhcCCcEEEEcCCCC-C-CCch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEc
Q 029149 60 FSFLKSLGLRSVIYLCPEP-Y-PDSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHC 133 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~-~-~~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC 133 (198)
++..++.|+...+++.... . ++.+ .+.+.+.|...+.+ .|... ...++++.+.++.+.+.-+. |+-+||
T Consensus 118 i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l--~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~ 192 (263)
T cd07943 118 IGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV--TDSAG---AMLPDDVRERVRALREALDPTPVGFHG 192 (263)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE--cCCCC---CcCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 3456677888877773221 1 1112 23344567776544 33211 13578888888888765455 899999
Q ss_pred CCCCChHHHHHHHHH
Q 029149 134 KRGKHRTGCLVGCLR 148 (198)
Q Consensus 134 ~aG~~RTG~v~a~yL 148 (198)
+.-. |+..|-.+
T Consensus 193 Hn~~---GlA~AN~l 204 (263)
T cd07943 193 HNNL---GLAVANSL 204 (263)
T ss_pred cCCc---chHHHHHH
Confidence 9866 44444444
No 91
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=73.16 E-value=28 Score=29.69 Aligned_cols=43 Identities=9% Similarity=-0.059 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+.+.++.+--....+|+|+|..|. +.+..++..|...|..
T Consensus 72 ~~~~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 72 PETFAVAMRELGVNQDKHLVVYDEGNL-FSAPRAWWMLRTFGVE 114 (281)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCC-chHHHHHHHHHHhcCC
Confidence 566776666653234789999998775 4444444444445654
No 92
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=72.72 E-value=13 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCL 147 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~y 147 (198)
.+.+|++||..+..|+...+..+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l 83 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKF 83 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHH
Confidence 36799999984444766655443
No 93
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=72.51 E-value=24 Score=31.03 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=16.6
Q ss_pred cEEEEcC-CCCChHHHHHHHHHHHCCCC
Q 029149 128 PLLIHCK-RGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 128 pVLVHC~-aG~~RTG~v~a~yL~~~g~~ 154 (198)
.|+|+|. +|. |++.++ .+|...|++
T Consensus 76 ~vvvyC~~gG~-RS~~aa-~~L~~~G~~ 101 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLA-WLLAQIGFR 101 (311)
T ss_pred cEEEEECCCCh-HHHHHH-HHHHHcCCC
Confidence 4999996 555 887665 444556763
No 94
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=71.78 E-value=7 Score=33.39 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=20.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..+||+++|..|. |++.+ +.+|...|+.
T Consensus 230 ~~~~ii~yC~~G~-~A~~~-~~~l~~~G~~ 257 (281)
T PRK11493 230 FDRPIIASCGSGV-TAAVV-VLALATLDVP 257 (281)
T ss_pred CCCCEEEECCcHH-HHHHH-HHHHHHcCCC
Confidence 4679999999988 66554 4555567775
No 95
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=71.14 E-value=7.8 Score=27.05 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=19.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.||+++|.+|...+...++-.|+..|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 377999999999733344555555556654
No 96
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=70.63 E-value=31 Score=30.38 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=70.4
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcceecCCCccccccceEecCCCCcccH---HHHHhcCCcE-EEEcCCCCCCC--ch
Q 029149 10 IRTVREKSPAPINGTGENGSRDGEELFVPPFNFAIVDNGIFRSGFPDSANF---SFLKSLGLRS-VIYLCPEPYPD--SN 83 (198)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~nf~~V~~~Lyrs~~p~~~~~---~~L~~~GIkt-VInLr~e~~~~--~~ 83 (198)
+|+-|+|-|-|+.--+.-=.-+...++....... |..+|-....-+ +.|++.||+. |||+-+-.+-+ ..
T Consensus 163 ~Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~t-----iiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i 237 (312)
T COG3958 163 MRLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLT-----IIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAI 237 (312)
T ss_pred EEecCCCCCceecCCCceEeccceeEeecCCceE-----EEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHH
Confidence 6788888776664331111111122222222222 334444443332 5789999987 99998865322 23
Q ss_pred HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc---CCCCChHHHHHHHHHHHCCCCHHHHHH
Q 029149 84 LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHC---KRGKHRTGCLVGCLRKLQKWCLSSIFD 160 (198)
Q Consensus 84 ~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC---~aG~~RTG~v~a~yL~~~g~~~~~a~~ 160 (198)
...+++.|.- +-++.+.. .-.+-.++..++.. ++|+-++= ....+|||.. .-+|...|.+.+.+.+
T Consensus 238 ~~~A~~t~~I---vT~EeHsi------~GGlGsaVAEvlse-~~p~~~~riGvp~~fg~sg~~-~~Ll~~ygl~~~~I~~ 306 (312)
T COG3958 238 LKAARETGRI---VTAEEHSI------IGGLGSAVAEVLSE-NGPTPMRRIGVPDTFGRSGKA-DELLDYYGLDPESIAA 306 (312)
T ss_pred HHHHhhcCcE---EEEeccee------ecchhHHHHHHHHh-cCCcceEEecCCchhccccch-HHHHHHhCCCHHHHHH
Confidence 3444444321 22332210 11233344444432 44444432 2445688877 5555679999999988
Q ss_pred HHHH
Q 029149 161 EYQR 164 (198)
Q Consensus 161 e~~~ 164 (198)
..+.
T Consensus 307 ~v~~ 310 (312)
T COG3958 307 RVLE 310 (312)
T ss_pred HHHh
Confidence 6654
No 97
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=69.81 E-value=1.5 Score=41.20 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCL 147 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~y 147 (198)
.+......|++||||||++-+-.
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 35677889999999999976443
No 98
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=69.55 E-value=10 Score=26.77 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
+++|+++|..|. |++.++. .|...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~-~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA-FLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH-HHHHcCCC
Confidence 679999999998 7665544 44556654
No 99
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=68.75 E-value=7.6 Score=27.14 Aligned_cols=28 Identities=7% Similarity=-0.086 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+|+|+|..|. |+..+ +.+|...|.+
T Consensus 55 ~~~~ivv~c~~g~-~s~~~-~~~l~~~G~~ 82 (96)
T cd01529 55 RATRYVLTCDGSL-LARFA-AQELLALGGK 82 (96)
T ss_pred CCCCEEEEeCChH-HHHHH-HHHHHHcCCC
Confidence 4789999999876 77554 4445667764
No 100
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=67.49 E-value=18 Score=24.83 Aligned_cols=39 Identities=13% Similarity=0.385 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 112 ETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..+.+.+..+ ..+.||+|+|..|. |+.. ++.+|...|.+
T Consensus 44 ~~~~~~~~~~--~~~~~ivv~c~~g~-~s~~-a~~~l~~~G~~ 82 (96)
T cd01444 44 DSLDDWLGDL--DRDRPVVVYCYHGN-SSAQ-LAQALREAGFT 82 (96)
T ss_pred HHHHHHHhhc--CCCCCEEEEeCCCC-hHHH-HHHHHHHcCCc
Confidence 3444444332 35789999999776 6544 45555556654
No 101
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=66.78 E-value=17 Score=33.44 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=36.8
Q ss_pred hCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCH
Q 029149 89 ANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKL--QKWCL 155 (198)
Q Consensus 89 ~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~--~g~~~ 155 (198)
..|+ ..+.|.|+..- +++....+.+..+-+.-+-||.+||++ .||+..++|++. .|++.
T Consensus 167 ~~g~--DSIciKDmaGl---ltP~~ayelVk~iK~~~~~pv~lHtH~---TsG~a~m~ylkAvEAGvD~ 227 (472)
T COG5016 167 EMGV--DSICIKDMAGL---LTPYEAYELVKAIKKELPVPVELHTHA---TSGMAEMTYLKAVEAGVDG 227 (472)
T ss_pred HcCC--CEEEeeccccc---CChHHHHHHHHHHHHhcCCeeEEeccc---ccchHHHHHHHHHHhCcch
Confidence 3455 33556655321 233333445555544446899999998 779999999984 77754
No 102
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=66.63 E-value=8.1 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
...||+|+|..|. |+ ..++.+|...|.+
T Consensus 60 ~~~~ivv~c~~g~-~s-~~~~~~l~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCASGW-RS-ALAGKTLQDMGLK 87 (103)
T ss_pred CCCeEEEEcCCCC-cH-HHHHHHHHHcChH
Confidence 4789999999885 75 3445555556754
No 103
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=65.48 E-value=55 Score=29.26 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCc--EEEEcCCCC
Q 029149 111 EETIREALKVVLDERNHP--LLIHCKRGK 137 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~p--VLVHC~aG~ 137 (198)
.+.+.++++.+.+. +.| +|+||.++.
T Consensus 159 ~~ei~~av~~~r~~-g~~~i~LLhC~s~Y 186 (347)
T COG2089 159 IEEIEEAVAILREN-GNPDIALLHCTSAY 186 (347)
T ss_pred HHHHHHHHHHHHhc-CCCCeEEEEecCCC
Confidence 46788888887664 555 999999875
No 104
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=64.84 E-value=5.5 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=25.4
Q ss_pred cCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhcc
Q 029149 133 CKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~ 168 (198)
|-.|. |..+-..+.+..+|+|.++++++|-.....
T Consensus 25 ~I~Gt-RI~V~~Il~~l~~G~s~eeil~dyp~Lt~~ 59 (79)
T COG2442 25 CIRGT-RIPVWDILEMLAAGESIEEILADYPDLTLE 59 (79)
T ss_pred eEeCc-eecHHHHHHHHHCCCCHHHHHHhCCCCCHH
Confidence 55677 665555555556999999999999854444
No 105
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.78 E-value=88 Score=26.61 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHhcCCcEEEEcCCCC-CC-Cch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC--CcEEEE
Q 029149 60 FSFLKSLGLRSVIYLCPEP-YP-DSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN--HPLLIH 132 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~-~~-~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~--~pVLVH 132 (198)
++..+++|++..+++.... .+ +.+ .+.+.+.|...+.++=... ...++++.+.+..+.+.-+ -|+-+|
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG-----SMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC-----CCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4566778998888876532 11 122 2233456777655443222 1357888888888765433 789999
Q ss_pred cCCCCChHHHHHHHHH
Q 029149 133 CKRGKHRTGCLVGCLR 148 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL 148 (198)
|+.-. |+..|-.+
T Consensus 190 ~Hn~~---Gla~AN~l 202 (266)
T cd07944 190 AHNNL---QLALANTL 202 (266)
T ss_pred eCCCc---cHHHHHHH
Confidence 99855 55555555
No 106
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=63.98 E-value=8.4 Score=32.76 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=71.2
Q ss_pred EecCCC-CcccH-HHHHhcCCcEEEEcCCCC---CCCchHHHhHhCCceEEEeecCCCCC-CCCC-CCHHHHHHHHHHHH
Q 029149 50 FRSGFP-DSANF-SFLKSLGLRSVIYLCPEP---YPDSNLEFLKANGIQLFQFGIDGCKE-PFVN-IPEETIREALKVVL 122 (198)
Q Consensus 50 yrs~~p-~~~~~-~~L~~~GIktVInLr~e~---~~~~~~~~~~~~gI~~~~lpi~~~~~-p~~~-~~~~~v~~~l~~i~ 122 (198)
.+.|.. +.+++ .+|++.+|+.|||.+.-- .+....++|++.||.|+++-=+.... +... ...+.+.++.+.+.
T Consensus 46 v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~ 125 (248)
T PRK08057 46 VRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALA 125 (248)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhh
Confidence 456667 77776 578899999999998641 23456788999999999863221100 0000 01234555666654
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHH------H-H------HCCCCHHHHHHHHHHhhccccCccHHHHHHHcCcc-cccc
Q 029149 123 DERNHPLLIHCKRGKHRTGCLVGCL------R-K------LQKWCLSSIFDEYQRFAAAKARLSDQRFIELFDIS-SFKR 188 (198)
Q Consensus 123 ~~~~~pVLVHC~aG~~RTG~v~a~y------L-~------~~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~~-~~~~ 188 (198)
+. +.||+ +.|..--..+...+ . + ..|++...+++ ...+-....+...++.|+.+ .|+|
T Consensus 126 ~~--~~vll--ttGsk~l~~f~~~~~~~r~~~RvLP~~~s~~g~~~~~iia----m~gPfs~e~n~aL~~~~~i~~lVtK 197 (248)
T PRK08057 126 PF--RRVLL--TTGRQPLAHFAAILPEHRLLVRVLPPPEVLLGLPRAEIIA----LRGPFSLELERALLRQHRIDVVVTK 197 (248)
T ss_pred cc--CCEEE--ecCcchHHHHhhcCCCCEEEEEECCCchhcCCCChhhEEE----eeCCCCHHHHHHHHHHcCCCEEEEc
Confidence 43 57776 44442222232211 0 0 12333333322 11221234778888888887 5555
Q ss_pred c
Q 029149 189 L 189 (198)
Q Consensus 189 ~ 189 (198)
+
T Consensus 198 ~ 198 (248)
T PRK08057 198 N 198 (248)
T ss_pred C
Confidence 4
No 107
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=63.28 E-value=9.4 Score=33.00 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=29.2
Q ss_pred HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 029149 85 EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCK 134 (198)
Q Consensus 85 ~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~ 134 (198)
.+++..|+.|+ -|++++. .+.+.++|+.+-+ .++||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGHd-------l~~Li~~l~~~K~-~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGHD-------LEELIEVLENAKD-IDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCC-SSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCCC-------HHHHHHHHHHHhc-CCCCEEEEEe
Confidence 45788899997 5788763 4566678887754 4899999973
No 108
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=62.87 E-value=15 Score=35.79 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=32.9
Q ss_pred HhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCCCh
Q 029149 86 FLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGKHR 139 (198)
Q Consensus 86 ~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~~R 139 (198)
+++..|++|+ -|++++. .+.+.++|+.+-+.. ++|++||+..=|++
T Consensus 277 ~fe~~G~~y~-g~iDGHd-------~~~L~~al~~~k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 277 LFEELGLYYI-GPVDGHN-------IDDLVTILREVKSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred hHHHcCCeEE-eeeCCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 3567788875 3677763 467777888776542 68999999776655
No 109
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=61.79 E-value=14 Score=26.57 Aligned_cols=30 Identities=3% Similarity=0.004 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+|+++|..|....+..++..|...|.+
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 478999999988643344444555566764
No 110
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=60.17 E-value=15 Score=35.95 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=34.4
Q ss_pred HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCCCh
Q 029149 85 EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGKHR 139 (198)
Q Consensus 85 ~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~~R 139 (198)
.++++.|+.|+ -|++++. .+.+.++|+.+-+.+ .+||+||-..-|++
T Consensus 320 ~lFe~lG~~Y~-GpvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYI-GPVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEE-CccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 35678888886 5777763 466777888876543 58999999887775
No 111
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=59.46 E-value=27 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChHHHHH
Q 029149 128 PLLIHCKRGKHRTGCLV 144 (198)
Q Consensus 128 pVLVHC~aG~~RTG~v~ 144 (198)
-|.|=|++|++||-.++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 48999999999997766
No 112
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=59.42 E-value=21 Score=31.16 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 110 PEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 110 ~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
+.+++++.+...-=..+++|+++|..|. |+. +++..|...|++
T Consensus 253 ~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~-~~~~~L~~~G~~ 295 (320)
T PLN02723 253 PAEELKKRFEQEGISLDSPIVASCGTGV-TAC-ILALGLHRLGKT 295 (320)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHH-HHHHHHHHcCCC
Confidence 3466666555431124679999999876 554 444444567775
No 113
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=59.09 E-value=21 Score=34.36 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+.+.++.+--..+++|.+||.+|. |++.++ ..|...|++
T Consensus 208 ~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~-~~L~~lG~~ 249 (610)
T PRK09629 208 RQDMPEILRDLGITPDKEVITHCQTHH-RSGFTY-LVAKALGYP 249 (610)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCCCh-HHHHHH-HHHHHcCCC
Confidence 456666665442124789999999986 766554 444567775
No 114
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=58.13 E-value=44 Score=29.05 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=44.3
Q ss_pred eEecCCC--CcccHHHHHhcCCcEE--EEcC-----------CCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHH
Q 029149 49 IFRSGFP--DSANFSFLKSLGLRSV--IYLC-----------PEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEET 113 (198)
Q Consensus 49 Lyrs~~p--~~~~~~~L~~~GIktV--InLr-----------~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~ 113 (198)
+|.=|.+ ++.-++.|+++|++.| =++. ....++...+.+++.|++.+ |..+|++ ..
T Consensus 34 vy~lG~iVHN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~vi-----DaTCP~V----~k 104 (281)
T PRK12360 34 IYTLGPLIHNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEII-----DATCPFV----KK 104 (281)
T ss_pred eEEecCCcCCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----eCCCccc----hH
Confidence 6655553 4666788999999887 3332 22234455666777888774 5566654 23
Q ss_pred HHHHHHHHHhcCCCcEEEEc
Q 029149 114 IREALKVVLDERNHPLLIHC 133 (198)
Q Consensus 114 v~~~l~~i~~~~~~pVLVHC 133 (198)
+.+.++.+.+ .++.|+++=
T Consensus 105 ~~~~v~~~~~-~Gy~iviiG 123 (281)
T PRK12360 105 IQNIVEEYYN-KGYSIIIVG 123 (281)
T ss_pred HHHHHHHHHh-CCCEEEEEc
Confidence 4444444443 366666654
No 115
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=58.02 E-value=28 Score=29.49 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=34.3
Q ss_pred HhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCC------------CCCCC----CCCHHHHHHHHHHHHh-cCC
Q 029149 64 KSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGC------------KEPFV----NIPEETIREALKVVLD-ERN 126 (198)
Q Consensus 64 ~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~------------~~p~~----~~~~~~v~~~l~~i~~-~~~ 126 (198)
+++||.-+...-.. .-.+++++.|+.++.++=.+- +.|.+ ..+.+.|.++++.+.+ ...
T Consensus 66 ~~~gi~f~stpfd~----~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~ 141 (241)
T PF03102_consen 66 KELGIDFFSTPFDE----ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNE 141 (241)
T ss_dssp HHTT-EEEEEE-SH----HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT-
T ss_pred HHcCCEEEECCCCH----HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 45676555444322 234455666666666543221 11110 1236788889998844 345
Q ss_pred CcEEEEcCCCC
Q 029149 127 HPLLIHCKRGK 137 (198)
Q Consensus 127 ~pVLVHC~aG~ 137 (198)
.=+|.||.++-
T Consensus 142 ~l~llHC~s~Y 152 (241)
T PF03102_consen 142 DLVLLHCVSSY 152 (241)
T ss_dssp -EEEEEE-SSS
T ss_pred CEEEEecCCCC
Confidence 56999999874
No 116
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=57.25 E-value=1.3e+02 Score=26.60 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=42.6
Q ss_pred HHHHHhcCCcEEEEcCCCCC--CCchH---HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEEEE
Q 029149 60 FSFLKSLGLRSVIYLCPEPY--PDSNL---EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER--NHPLLIH 132 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~--~~~~~---~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~--~~pVLVH 132 (198)
++..+++|..+.+++..... ++.+. +.+.+.|...+. +.|..- .+.++++.+.+..+.+.- .-||-+|
T Consensus 120 i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~--i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 120 IGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVY--IVDSAG---AMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEE--EccCCC---CCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 45666777777777754321 11122 223445666543 333211 135778888888776543 3689999
Q ss_pred cCCCCC
Q 029149 133 CKRGKH 138 (198)
Q Consensus 133 C~aG~~ 138 (198)
|+...+
T Consensus 195 ~HnnlG 200 (333)
T TIGR03217 195 AHHNLS 200 (333)
T ss_pred eCCCCc
Confidence 998763
No 117
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=57.20 E-value=8 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhc
Q 029149 135 RGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAA 167 (198)
Q Consensus 135 aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~ 167 (198)
.|. |-.+-..+-+...||+.++++++|.....
T Consensus 15 ~GT-RI~v~~i~~~~~~G~s~eeI~~~yp~Lt~ 46 (56)
T PF04255_consen 15 RGT-RIPVRDILDLLAAGESPEEIAEDYPSLTL 46 (56)
T ss_dssp TTS-S-BHHHHHHHHHTT--HHHHHHHSTT--H
T ss_pred cCc-eecHHHHHHHHHcCCCHHHHHHHCCCCCH
Confidence 455 54444444444899999999999875443
No 118
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=56.96 E-value=31 Score=25.57 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
++.+|+|+|..|-.|+..++ .+|...|..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~-~~L~~~G~~ 113 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLA-WLLESLGID 113 (128)
T ss_pred CCCeEEEEeCCCCccHHHHH-HHHHHcCCc
Confidence 47899999975433876555 444556763
No 119
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=56.87 E-value=1.3e+02 Score=26.68 Aligned_cols=74 Identities=12% Similarity=0.241 Sum_probs=44.7
Q ss_pred cHHHHHhcCCcEEEEcCCCCCC--Cch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEEE
Q 029149 59 NFSFLKSLGLRSVIYLCPEPYP--DSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER--NHPLLI 131 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~~~--~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~--~~pVLV 131 (198)
.++..+++|.+..+++...... +.+ .+.+.+.|...+. +.|..- .+.++++.+.+..+.+.- .-||-+
T Consensus 120 ~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~--i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~ 194 (337)
T PRK08195 120 HIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVY--VVDSAG---ALLPEDVRDRVRALRAALKPDTQVGF 194 (337)
T ss_pred HHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEE--eCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 3456677888888877654311 112 2334456776543 433211 135788888888886643 578999
Q ss_pred EcCCCC
Q 029149 132 HCKRGK 137 (198)
Q Consensus 132 HC~aG~ 137 (198)
||+...
T Consensus 195 H~Hnnl 200 (337)
T PRK08195 195 HGHNNL 200 (337)
T ss_pred EeCCCc
Confidence 999866
No 120
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=55.76 E-value=87 Score=29.02 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCC----C---chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 029149 60 FSFLKSLGLRSVIYLCPEPYP----D---SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIH 132 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~----~---~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVH 132 (198)
++..++.|....++++-...+ + ...+.+.+.|...+. +.|..- -..+.++.+.+..+.+.-+-||-+|
T Consensus 129 v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~--i~Dt~G---~l~P~~v~~lv~alk~~~~~pi~~H 203 (448)
T PRK12331 129 VKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSIC--IKDMAG---ILTPYVAYELVKRIKEAVTVPLEVH 203 (448)
T ss_pred HHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--EcCCCC---CCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 345567777655544432211 1 122334556776544 444321 1246777777777766546799999
Q ss_pred cCCCCChHHHHHHHHHH
Q 029149 133 CKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~ 149 (198)
|+.-. |+.+|-++.
T Consensus 204 ~Hnt~---GlA~AN~la 217 (448)
T PRK12331 204 THATS---GIAEMTYLK 217 (448)
T ss_pred ecCCC---CcHHHHHHH
Confidence 98644 455555553
No 121
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=53.46 E-value=59 Score=28.50 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=50.4
Q ss_pred eEecCCC--CcccHHHHHhcCCcEEEEcCC-----------CCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHH
Q 029149 49 IFRSGFP--DSANFSFLKSLGLRSVIYLCP-----------EPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIR 115 (198)
Q Consensus 49 Lyrs~~p--~~~~~~~L~~~GIktVInLr~-----------e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~ 115 (198)
+|.=|.+ ++.-++.|+++|+++|=++.. ...++...+.+++.|++.+ |..+|++ ..+.
T Consensus 33 iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~vi-----DaTCP~V----~k~~ 103 (298)
T PRK01045 33 IYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVI-----DATCPLV----TKVH 103 (298)
T ss_pred eEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----eCCCccc----hHHH
Confidence 6655554 566789999999988754432 2233455666778888875 4566654 3344
Q ss_pred HHHHHHHhcCCCcEEEEcCCCC
Q 029149 116 EALKVVLDERNHPLLIHCKRGK 137 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG~ 137 (198)
+.++.+.+ .++.|+++...+-
T Consensus 104 ~~v~~~~~-~Gy~vvi~G~~~H 124 (298)
T PRK01045 104 KEVARMSR-EGYEIILIGHKGH 124 (298)
T ss_pred HHHHHHHh-CCCEEEEEeCCCC
Confidence 44554443 4788888887654
No 122
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=53.32 E-value=22 Score=34.14 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=32.2
Q ss_pred hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 87 LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 87 ~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
++..|+.|+. |++++. .+.+.++|+.+.+. ++|++|||..=|++
T Consensus 234 f~~~G~~~~~-~vDGhd-------~~~l~~al~~ak~~-~~P~~i~~~T~KGk 277 (617)
T TIGR00204 234 FEELGFNYIG-PVDGHD-------LLELIETLKNAKKL-KGPVFLHIQTKKGK 277 (617)
T ss_pred HHHcCCcEEc-ccCCCC-------HHHHHHHHHHHhcC-CCCEEEEEEecCCC
Confidence 5668888877 887763 46677788866443 67999999877766
No 123
>TIGR03586 PseI pseudaminic acid synthase.
Probab=53.16 E-value=1.1e+02 Score=27.13 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 111 EETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
.+.+..+++.+.+..+ .=+|.||.++
T Consensus 146 ~~Ei~~Av~~i~~~g~~~i~LlhC~s~ 172 (327)
T TIGR03586 146 LEEIQEAVEACREAGCKDLVLLKCTSS 172 (327)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 5667777777764322 3477788766
No 124
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.82 E-value=1.6e+02 Score=26.26 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=44.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCC--Cch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYP--DSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCK 134 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~--~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~ 134 (198)
++..++.|.+..+++-..... +.+ .+.+.+.|...+.++=.... ..++++.+.++.+.+.-+-|+-+||+
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~-----~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGI-----LDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCC-----CCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 345567898766664432211 112 23345678877655433221 34678888888887654578999998
Q ss_pred CCC
Q 029149 135 RGK 137 (198)
Q Consensus 135 aG~ 137 (198)
.-.
T Consensus 194 Nd~ 196 (365)
T TIGR02660 194 NDL 196 (365)
T ss_pred CCC
Confidence 755
No 125
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=52.78 E-value=56 Score=26.83 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
..+|.+.|.+.|+.-++........+..+..|.+...++++-. ..+++.++++.+.+.-+ --++|||.+..
T Consensus 27 a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 27 AKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVT-------DEDGVQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 3567788998766644432111122223344544444555432 25678878877765433 24999998754
No 126
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=52.67 E-value=29 Score=33.65 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=33.3
Q ss_pred HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCCCh
Q 029149 84 LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGKHR 139 (198)
Q Consensus 84 ~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~~R 139 (198)
.+.++..|..|+. |++++. .+.+.++|+.+.+.. ++|++|||..-|++
T Consensus 276 ~~~fe~fG~~~~g-~vDGHd-------~~~l~~al~~~k~~~~~~P~vI~~~T~KGk 324 (641)
T PLN02234 276 STLFEELGFHYVG-PVDGHN-------IDDLVSILETLKSTKTIGPVLIHVVTEKGR 324 (641)
T ss_pred HHHHHHcCCEEEe-eECCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEEecCC
Confidence 4556778887741 567652 566777888765433 58999999887766
No 127
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.14 E-value=73 Score=27.28 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=48.4
Q ss_pred HHHHHhcCCcEEEEcCCC-----C--CC-C---chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CC
Q 029149 60 FSFLKSLGLRSVIYLCPE-----P--YP-D---SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NH 127 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e-----~--~~-~---~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~ 127 (198)
++..++.|++..+++... . .+ + ...+.+.+.|...+.++=.... ..+.++.+.++.+.+.- +-
T Consensus 120 v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~-----~~P~~v~~lv~~l~~~~~~~ 194 (274)
T cd07938 120 AELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGV-----ATPAQVRRLLEAVLERFPDE 194 (274)
T ss_pred HHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCc-----cCHHHHHHHHHHHHHHCCCC
Confidence 456778899988776632 1 11 1 1223345678877555433221 24677888888876643 46
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q 029149 128 PLLIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 128 pVLVHC~aG~~RTG~v~a~yL 148 (198)
|+-+||+.-. |+.+|-.+
T Consensus 195 ~i~~H~Hnd~---GlA~AN~l 212 (274)
T cd07938 195 KLALHFHDTR---GQALANIL 212 (274)
T ss_pred eEEEEECCCC---ChHHHHHH
Confidence 8999998755 44444444
No 128
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=52.00 E-value=1.1e+02 Score=25.09 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=51.3
Q ss_pred HHHHHhcCCcEEEEcCCCCC-C-Cch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEc
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-P-DSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHC 133 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~-~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC 133 (198)
+...+++|++..+++-.... + ..+ .+.+.+.|+..+.++=.... ..++++.+.++.+.+.-+ .++-+||
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~-----~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGI-----MTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS------S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCC-----cCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 35667899999888866431 1 122 33344568888766533221 246788888888876434 7898998
Q ss_pred CCCCChHHHHHHHHHH--HCCCC
Q 029149 134 KRGKHRTGCLVGCLRK--LQKWC 154 (198)
Q Consensus 134 ~aG~~RTG~v~a~yL~--~~g~~ 154 (198)
+.-. |+.+|-++. ..|.+
T Consensus 189 Hnd~---Gla~An~laA~~aGa~ 208 (237)
T PF00682_consen 189 HNDL---GLAVANALAALEAGAD 208 (237)
T ss_dssp BBTT---S-HHHHHHHHHHTT-S
T ss_pred cCCc---cchhHHHHHHHHcCCC
Confidence 8754 555555554 25544
No 129
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=51.76 E-value=15 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=37.6
Q ss_pred EecCCCCcccH-HHHHhcCCcEEEEcCCCC---CCCchHHHhHhCCceEEEe
Q 029149 50 FRSGFPDSANF-SFLKSLGLRSVIYLCPEP---YPDSNLEFLKANGIQLFQF 97 (198)
Q Consensus 50 yrs~~p~~~~~-~~L~~~GIktVInLr~e~---~~~~~~~~~~~~gI~~~~l 97 (198)
.+.+..+..++ ++|++.+++.|||....- .+....++|++.||.|+.+
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 45666777777 678899999999998742 3345677889999999997
No 130
>PRK08862 short chain dehydrogenase; Provisional
Probab=50.83 E-value=57 Score=26.56 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=39.7
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC--CcEEEEcCCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN--HPLLIHCKRGK 137 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~--~pVLVHC~aG~ 137 (198)
..|.+.|.+-++.-|..+..+...+.++..+.+.+.+.++.. ..+++.++++.+.+.-+ =-++|||.++.
T Consensus 23 ~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~iD~li~nag~~ 94 (227)
T PRK08862 23 CHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDF-------SQESIRHLFDAIEQQFNRAPDVLVNNWTSS 94 (227)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCC-------CHHHHHHHHHHHHHHhCCCCCEEEECCccC
Confidence 467788998766555432111122223344545444555432 35778888887765423 24999998653
No 131
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=50.75 E-value=42 Score=26.74 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=38.1
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEee
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFG 98 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lp 98 (198)
||.+-.|-+.=...|...||+.||-..+.+. .....+.+++.||++.+++
T Consensus 104 LYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~~~~ 154 (168)
T PHA02588 104 MYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIEVIQIP 154 (168)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCEEEEeC
Confidence 8999999887677888899999998765322 1224567899999988764
No 132
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=50.08 E-value=37 Score=29.15 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=37.2
Q ss_pred eEecCCCCcccH-HHHHhcCCcEEEEcCCCC---CCCchHHHhHhCCceEEEee
Q 029149 49 IFRSGFPDSANF-SFLKSLGLRSVIYLCPEP---YPDSNLEFLKANGIQLFQFG 98 (198)
Q Consensus 49 Lyrs~~p~~~~~-~~L~~~GIktVInLr~e~---~~~~~~~~~~~~gI~~~~lp 98 (198)
.-.+|...++.+ ++|++.+|+.|||-+.-- .+..-.++|+..||.|+.+-
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 345666666665 578999999999998641 33445677899999999863
No 133
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.92 E-value=67 Score=25.83 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=38.4
Q ss_pred HHHHHhcCCcEEEE-cCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIY-LCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVIn-Lr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.|+. .|.........+.++..+-++..+..+-. +.+.+.++++.+.+.-+. -++|||.+.
T Consensus 21 a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 21 ALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVG-------DVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45677889886663 44332111122223344545555554432 246777777776553222 499999764
No 134
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=49.64 E-value=1e+02 Score=24.21 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=40.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHh-HhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFL-KANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~-~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
.+.|+++||++|+-+-..... .+.+.+ +..+++++...=+.. ...+.+... ...++|..+-|+.|-+
T Consensus 4 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~~i~~v~~rhE~~--------A~~mAdgya---r~sg~~gv~~~t~GpG 71 (162)
T cd07037 4 VEELKRLGVRDVVISPGSRSA-PLALAAAEHPEFRLHVRVDERS--------AAFFALGLA---KASGRPVAVVCTSGTA 71 (162)
T ss_pred HHHHHHCCCCEEEECCCcchH-HHHHHHHhCCCceEEeccChHH--------HHHHHHHHH---HhhCCCEEEEECCchH
Confidence 467899999999988776432 233333 335788764332211 111222221 2235565555666665
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-.+.+++-
T Consensus 72 ~~n~~~gl~~ 81 (162)
T cd07037 72 VANLLPAVVE 81 (162)
T ss_pred HHHHhHHHHH
Confidence 5555554444
No 135
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.53 E-value=79 Score=25.55 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
...|.+.|.+.++--|.+...+...+.+++.+-+...+..+-. +.+.+.++++.+.+.. +--++|||.+..
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 24 ALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT-------NEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 3567788997666555442111122222333434333333321 2456766776654432 235899998653
No 136
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=49.45 E-value=1.1e+02 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+++|++.|++|+ |--- +..||+..|+.
T Consensus 171 ~~KkVvmyCTGGI-RCEK-as~~m~~~GF~ 198 (308)
T COG1054 171 KDKKVVMYCTGGI-RCEK-ASAWMKENGFK 198 (308)
T ss_pred cCCcEEEEcCCce-eehh-hHHHHHHhcch
Confidence 4779999999999 7433 34455556653
No 137
>PRK07411 hypothetical protein; Validated
Probab=49.43 E-value=21 Score=32.29 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
..++|++||..|. |+.. ++.+|..+|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHcCCC
Confidence 3679999999988 8855 45566667875
No 138
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=48.88 E-value=32 Score=31.93 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=20.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.++|++++|.+|. ||..+ +.+|..+|++
T Consensus 448 ~~~~iivyC~~G~-rS~~a-a~~L~~~G~~ 475 (482)
T PRK01269 448 QSKTYLLYCDRGV-MSRLQ-ALYLREQGFS 475 (482)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHHcCCc
Confidence 4679999999998 76554 5555566764
No 139
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=48.79 E-value=31 Score=33.27 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=32.7
Q ss_pred HhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 86 FLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 86 ~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
++++.|+.|+ -|++++. .+.+...|+.+-+ .++||++|...=|++
T Consensus 238 lFeelGf~Yi-GPiDGHn-------i~~Li~~Lk~~kd-~~gPvllHv~T~KGK 282 (627)
T COG1154 238 LFEELGFNYI-GPIDGHN-------LEELIPTLKNAKD-LKGPVLLHVVTKKGK 282 (627)
T ss_pred hHHHhCCeeE-CCcCCCC-------HHHHHHHHHHHhc-CCCCEEEEEEecCCC
Confidence 5567788876 4677653 4556668887766 488999999887766
No 140
>PRK05867 short chain dehydrogenase; Provisional
Probab=48.74 E-value=64 Score=26.22 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=37.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
...|.+.|.+-|+.-|+.+..+...+.++..+-+...+..+-. ..+.+.++++.+.+.- +=-++|||.+.
T Consensus 26 a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 26 ALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVS-------QHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4567788998776655432111122222333434433444322 2567777887776542 23599999754
No 141
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=48.28 E-value=59 Score=28.53 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=30.4
Q ss_pred cHHHHHhcCCcEEEEcCCCC----------CCCchHHHhHhCCc-eEEEeecCCC
Q 029149 59 NFSFLKSLGLRSVIYLCPEP----------YPDSNLEFLKANGI-QLFQFGIDGC 102 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~----------~~~~~~~~~~~~gI-~~~~lpi~~~ 102 (198)
-++.|.+.|++.|+-+...- ..-..++.+++.|+ +|..+|..+.
T Consensus 246 ~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 246 VLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp HHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred HHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 57889999999998877631 22345788899999 8999998875
No 142
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=47.95 E-value=1.6e+02 Score=26.53 Aligned_cols=140 Identities=12% Similarity=0.079 Sum_probs=68.3
Q ss_pred CccccccccccCCCCCCCCCCCCCCC-CCcceecCCC-cc-ccccc----eEecCCCCcccHHHHHhcCCcEEEEcCCCC
Q 029149 6 CDGEIRTVREKSPAPINGTGENGSRD-GEELFVPPFN-FA-IVDNG----IFRSGFPDSANFSFLKSLGLRSVIYLCPEP 78 (198)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~n-f~-~V~~~----Lyrs~~p~~~~~~~L~~~GIktVInLr~e~ 78 (198)
+||.|..|-+....+-..++....-+ .+.++.|.+- .+ -+..+ .+. ..+.+..+..+-+.|++||+++-..+
T Consensus 23 ~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~-~~~~e~~~~e~l~~GvTTv~d~~g~~ 101 (389)
T TIGR01975 23 ANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPT-TRTPELTLSDITKGGVTTVVGLLGTD 101 (389)
T ss_pred ECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCc-cCCHHHHHHHHHhCCcEEEecCcccC
Confidence 57888888655433222222222334 6677777652 11 11111 110 01111123455678999999986431
Q ss_pred -C---CC---chHHHhHhCCceEEEeecC-------------------------------CCCCCCCCCCHHHHHHHHHH
Q 029149 79 -Y---PD---SNLEFLKANGIQLFQFGID-------------------------------GCKEPFVNIPEETIREALKV 120 (198)
Q Consensus 79 -~---~~---~~~~~~~~~gI~~~~lpi~-------------------------------~~~~p~~~~~~~~v~~~l~~ 120 (198)
. .. ...+.++..||+-+-..-. ++.. ...+.+.+.+..+.
T Consensus 102 ~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~~d~iiG~~~ia~sd~r~--~~~~~~~l~~~~~~ 179 (389)
T TIGR01975 102 GITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLLIDKVIGVGEIAISDHRS--AQPTVEHLTNMAAE 179 (389)
T ss_pred ccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheeeehhhcccceEEEccCcC--CCCCHHHHHHHHHH
Confidence 1 11 2244556778864443111 1000 01234445544433
Q ss_pred HHh---cCCCc--EEEEcCCCCChHHHHHHHHH
Q 029149 121 VLD---ERNHP--LLIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 121 i~~---~~~~p--VLVHC~aG~~RTG~v~a~yL 148 (198)
... -.++| |.||...|......+..++.
T Consensus 180 ~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~ 212 (389)
T TIGR01975 180 ARVGGLLGGKPGIVNFHVGDSKRALQPIYELVE 212 (389)
T ss_pred HHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHH
Confidence 221 12478 99999998876666666654
No 143
>PRK10318 hypothetical protein; Provisional
Probab=47.90 E-value=26 Score=26.67 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEcCCCCChHHH
Q 029149 112 ETIREALKVVLDE---RNHPLLIHCKRGKHRTGC 142 (198)
Q Consensus 112 ~~v~~~l~~i~~~---~~~pVLVHC~aG~~RTG~ 142 (198)
+...+|++.+..+ .++|-.|+|..|..++.-
T Consensus 71 ~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S~ 104 (121)
T PRK10318 71 DTAEQFIDKVASSSSISGKPYIVKCPGKSDENAQ 104 (121)
T ss_pred ccHHHHHHHHhhhcccCCCCeEEEcCCCCcccHH
Confidence 3456788888764 489999999999865543
No 144
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=46.41 E-value=1.5e+02 Score=27.69 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=46.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCC-------chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPD-------SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIH 132 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~-------~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVH 132 (198)
++..++.|....+.++-...+. ...+.+.+.|... +.+.|..- -..++.+.+.+..+.+..+-||-+|
T Consensus 138 i~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~--I~IkDtaG---~l~P~~v~~Lv~alk~~~~~pi~~H 212 (468)
T PRK12581 138 LRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADS--ICIKDMAG---ILTPKAAKELVSGIKAMTNLPLIVH 212 (468)
T ss_pred HHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCE--EEECCCCC---CcCHHHHHHHHHHHHhccCCeEEEE
Confidence 4556677776555554422111 1223345567765 44444321 1346777777777765446789999
Q ss_pred cCCCCChHHHHHHHHHH
Q 029149 133 CKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~ 149 (198)
|+.- .|+.+|-++.
T Consensus 213 ~Hnt---~GlA~An~la 226 (468)
T PRK12581 213 THAT---SGISQMTYLA 226 (468)
T ss_pred eCCC---CccHHHHHHH
Confidence 9874 4666666664
No 145
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=46.16 E-value=42 Score=30.02 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=46.6
Q ss_pred EEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHH
Q 029149 70 SVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGC 142 (198)
Q Consensus 70 tVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~ 142 (198)
..+-+.++.-.....+++.-.|+....+|++... .+..+.+++.++...++...|++|-+++|.--||.
T Consensus 141 ~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~----~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga 209 (373)
T PF00282_consen 141 KPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDG----RMDIEALEKALEKDIANGKTPFAVVATAGTTNTGA 209 (373)
T ss_dssp SEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTS----SB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSB
T ss_pred ccccccccccccHHHHhcceeeeEEEEecCCcch----hhhHHHhhhhhcccccccccceeeeccCCCccccc
Confidence 3333444433345778888899999999998743 34577888888877665456889999999977764
No 146
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.08 E-value=1.5e+02 Score=25.20 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=43.4
Q ss_pred HHHHhcCCcEEEEcCCCC--CCCch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 61 SFLKSLGLRSVIYLCPEP--YPDSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~--~~~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
...++.|++..+++-.-. .++.. .+.+...|...+. +.|... ...++++.+.+..+.+.-+-|+-+||+.
T Consensus 119 ~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G---~~~P~~v~~~~~~~~~~~~~~i~~H~Hn 193 (262)
T cd07948 119 EFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVG--IADTVG---IATPRQVYELVRTLRGVVSCDIEFHGHN 193 (262)
T ss_pred HHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEE--ECCcCC---CCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345678998888874321 11122 2334556777544 444321 1357788888888876545788888887
Q ss_pred CC
Q 029149 136 GK 137 (198)
Q Consensus 136 G~ 137 (198)
-.
T Consensus 194 ~~ 195 (262)
T cd07948 194 DT 195 (262)
T ss_pred CC
Confidence 55
No 147
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=45.17 E-value=54 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~ 153 (198)
.+.++.+.+..-=...++|.++|..|. |++..+.++..+.+.
T Consensus 219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~-~As~~~~al~~lg~~ 260 (285)
T COG2897 219 PEEIARLYADAGIDPDKEVIVYCGSGV-RASVTWLALAELGGP 260 (285)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcCCch-HHHHHHHHHHHhCCC
Confidence 455654543331134789999999988 665554444444333
No 148
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=44.73 E-value=44 Score=32.33 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 85 EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 85 ~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
+.+++.|.+|+ -|++++. .+.+.++|+.+-+..++|++|||..=+++
T Consensus 240 ~~f~a~G~~~~-~~vdGhd-------~~~l~~al~~ak~~~~~P~~I~~~T~kGk 286 (641)
T PRK12571 240 TLFEELGFTYV-GPIDGHD-------MEALLSVLRAARARADGPVLVHVVTEKGR 286 (641)
T ss_pred hHHHHcCCEEE-CccCCCC-------HHHHHHHHHHHHhCCCCCEEEEEEecCcc
Confidence 45577888885 1456542 56777788876543578999999877766
No 149
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=44.06 E-value=89 Score=25.36 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=48.0
Q ss_pred cHHHHHhcCCcEEEEcCC-CCCCCchHHHhHhCCceEEEeec-CCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 029149 59 NFSFLKSLGLRSVIYLCP-EPYPDSNLEFLKANGIQLFQFGI-DGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRG 136 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~-e~~~~~~~~~~~~~gI~~~~lpi-~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG 136 (198)
....|.++|++--+-+-. +...+...+++++.++..+++|- .|.. +...+++.+.+.....|+|.+..|
T Consensus 31 Ga~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~T---------D~e~Al~~~~~~~~~~i~i~Ga~G 101 (208)
T cd07995 31 GANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFT---------DFEKALKLALERGADEIVILGATG 101 (208)
T ss_pred HHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCCC---------HHHHHHHHHHHcCCCEEEEEccCC
Confidence 356677777754322222 12334566777888999999998 4432 355688888776567899999988
Q ss_pred CChH
Q 029149 137 KHRT 140 (198)
Q Consensus 137 ~~RT 140 (198)
. |-
T Consensus 102 g-R~ 104 (208)
T cd07995 102 G-RL 104 (208)
T ss_pred C-cH
Confidence 8 65
No 150
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=43.63 E-value=76 Score=24.09 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCC-CCChHHHHHHHHHHHCCCCH
Q 029149 111 EETIREALKVVLDERNHPLLIHCKR-GKHRTGCLVGCLRKLQKWCL 155 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~a-G~~RTG~v~a~yL~~~g~~~ 155 (198)
.+.+++.+..+-=..+.+|+|.|.. +.+..+..++..|...|.+.
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~ 125 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPD 125 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCC
Confidence 4566666655421246899999975 12233444444455667653
No 151
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.55 E-value=1.6e+02 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHhcCC---CcEEEEcCCC
Q 029149 110 PEETIREALKVVLDERN---HPLLIHCKRG 136 (198)
Q Consensus 110 ~~~~v~~~l~~i~~~~~---~pVLVHC~aG 136 (198)
+.+.+..+++.+.+..+ .=+|+||.++
T Consensus 144 tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 144 TLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 46778888888865422 2578899886
No 152
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=43.47 E-value=35 Score=27.68 Aligned_cols=40 Identities=0% Similarity=-0.011 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHH
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQR 164 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~ 164 (198)
.++=|.|+|..|||.|-+..+..++..|+-....+-+|.+
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlK 59 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLK 59 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEec
Confidence 3667999999999999999988887654433333333333
No 153
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=43.44 E-value=53 Score=28.60 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChHHHHH
Q 029149 128 PLLIHCKRGKHRTGCLV 144 (198)
Q Consensus 128 pVLVHC~aG~~RTG~v~ 144 (198)
-|.|-|++|++|+=.++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 38899999999985554
No 154
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=43.29 E-value=2e+02 Score=24.11 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=44.0
Q ss_pred HHHHhcCCcEEEEcCCCCC--CCchH---HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 61 SFLKSLGLRSVIYLCPEPY--PDSNL---EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~--~~~~~---~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
+..++.|+...+++-.... ++.+. +.+.+.|+..+.++=... ...++++.+.+..+.+.-+-|+-+||+.
T Consensus 117 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~l~~H~Hn 191 (259)
T cd07939 117 GRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG-----ILDPFTTYELIRRLRAATDLPLEFHAHN 191 (259)
T ss_pred HHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3567789987777654321 12222 233467887655443222 1347888888888776545689999987
Q ss_pred CC
Q 029149 136 GK 137 (198)
Q Consensus 136 G~ 137 (198)
-.
T Consensus 192 ~~ 193 (259)
T cd07939 192 DL 193 (259)
T ss_pred CC
Confidence 65
No 155
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=43.03 E-value=97 Score=29.81 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=34.9
Q ss_pred hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 029149 87 LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 87 ~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
+.+.|...+ .+.|..- -+.+..+.+.++.+.+.-+-||-+||+. .+|+.+|-++.
T Consensus 164 l~~~Gad~i--~i~Dt~G---~l~P~~~~~lv~~lk~~~~~pi~~H~Hn---t~GlA~An~la 218 (593)
T PRK14040 164 LEDMGVDSL--CIKDMAG---LLKPYAAYELVSRIKKRVDVPLHLHCHA---TTGLSTATLLK 218 (593)
T ss_pred HHHcCCCEE--EECCCCC---CcCHHHHHHHHHHHHHhcCCeEEEEECC---CCchHHHHHHH
Confidence 445677654 3444321 1346777777777766546899999987 45676777765
No 156
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=42.23 E-value=35 Score=29.78 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCcE--EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhcc
Q 029149 117 ALKVVLDERNHPL--LIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 117 ~l~~i~~~~~~pV--LVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~ 168 (198)
+|+.+.+..+.|+ +++..+|. =||.++|+.+.. |++.+++.+-|......
T Consensus 17 vL~~le~~~g~~i~~~fD~i~GT-StGgiIA~~la~-g~s~~e~~~~y~~~~~~ 68 (312)
T cd07212 17 MLIAIEKALGRPIRELFDWIAGT-STGGILALALLH-GKSLREARRLYLRMKDR 68 (312)
T ss_pred HHHHHHHHhCCCchhhccEEEee-ChHHHHHHHHHc-CCCHHHHHHHHHHhhhh
Confidence 3444433235675 58899999 566666666655 99999999988886543
No 157
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=42.21 E-value=1.1e+02 Score=26.49 Aligned_cols=72 Identities=24% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHhcCCcEEEEcCC-----CC--C-CCc---hHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-Cc
Q 029149 61 SFLKSLGLRSVIYLCP-----EP--Y-PDS---NLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HP 128 (198)
Q Consensus 61 ~~L~~~GIktVInLr~-----e~--~-~~~---~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~p 128 (198)
+..++.|++...++.. .. . ++. ..+.+.+.|...+.++=.... ..+.++.+.++.+.+.-+ -|
T Consensus 127 ~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~-----~~P~~v~~lv~~l~~~~~~~~ 201 (287)
T PRK05692 127 EAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGV-----GTPGQVRAVLEAVLAEFPAER 201 (287)
T ss_pred HHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCc-----cCHHHHHHHHHHHHHhCCCCe
Confidence 4556789887655442 11 1 112 233345678886555432221 246778888888766433 58
Q ss_pred EEEEcCCCC
Q 029149 129 LLIHCKRGK 137 (198)
Q Consensus 129 VLVHC~aG~ 137 (198)
+-+||+.-.
T Consensus 202 i~~H~Hn~~ 210 (287)
T PRK05692 202 LAGHFHDTY 210 (287)
T ss_pred EEEEecCCC
Confidence 899998755
No 158
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.68 E-value=1.2e+02 Score=26.14 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=47.4
Q ss_pred HHHHhcCCcEEEEcCCCC-----CCCch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEE
Q 029149 61 SFLKSLGLRSVIYLCPEP-----YPDSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLI 131 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~-----~~~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLV 131 (198)
+..+++|+...+++..-. .++.+ .+.+.+.|+..+.++=.... ..+.++.+.++.+.+.- +-|+-+
T Consensus 122 ~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~-----~~P~~v~~l~~~l~~~~~~~~i~~ 196 (280)
T cd07945 122 EYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGI-----LSPFETYTYISDMVKRYPNLHFDF 196 (280)
T ss_pred HHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCC-----CCHHHHHHHHHHHHhhCCCCeEEE
Confidence 455778998888886411 11122 33345678887655433221 24677888888876532 468899
Q ss_pred EcCCCCChHHHHHHHHH
Q 029149 132 HCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 132 HC~aG~~RTG~v~a~yL 148 (198)
||+.-. |+.+|-.+
T Consensus 197 H~Hnd~---Gla~AN~l 210 (280)
T cd07945 197 HAHNDY---DLAVANVL 210 (280)
T ss_pred EeCCCC---CHHHHHHH
Confidence 998755 44444444
No 159
>PRK12937 short chain dehydrogenase; Provisional
Probab=41.62 E-value=1.2e+02 Score=24.19 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=38.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYP-DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~-~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.++..++.... ....+.+...+-+...+.++-. ..+.+.++++.+.+.-+. -++|||.+.
T Consensus 22 a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 22 ARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVA-------DAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 356788899877766654210 1112223333444444444432 246777788777654332 489999764
No 160
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=41.53 E-value=73 Score=30.05 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=37.6
Q ss_pred chHHHhHhCCc---eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHH
Q 029149 82 SNLEFLKANGI---QLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGC 142 (198)
Q Consensus 82 ~~~~~~~~~gI---~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~ 142 (198)
...++++-.|+ +...+|++... .+..+.+++.++...+....|+.|-+.+|..-||.
T Consensus 221 S~~kaa~~lglg~~~v~~vp~d~~g----~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGa 280 (522)
T TIGR03799 221 SLGKAADVLGIGRDNLIAIKTDANN----RIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGN 280 (522)
T ss_pred HHHHHHHHcCCCcccEEEEEeCCCC----cCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCC
Confidence 45566677788 67778887543 34577788787766555456776666677655554
No 161
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.58 E-value=92 Score=29.88 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=44.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCC----Cch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 029149 60 FSFLKSLGLRSVIYLCPEPYP----DSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIH 132 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~----~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVH 132 (198)
++..++.|....+++.-...+ +.+ .+.+.+.|...+ .+.|..- -..+..+.+.+..+.+.-+-||-+|
T Consensus 124 i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I--~i~Dt~G---~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 124 IQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSI--CIKDMAG---ILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE--EECCCCC---CcCHHHHHHHHHHHHHhCCCceEEE
Confidence 345566676665544322110 111 223345676654 3443221 1246677777777766546789999
Q ss_pred cCCCCChHHHHHHHHHH
Q 029149 133 CKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 133 C~aG~~RTG~v~a~yL~ 149 (198)
|+.-. |+.+|-++.
T Consensus 199 ~Hnt~---Gla~An~la 212 (582)
T TIGR01108 199 SHATT---GMAEMALLK 212 (582)
T ss_pred ecCCC---CcHHHHHHH
Confidence 98744 565666664
No 162
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=40.18 E-value=2.3e+02 Score=24.06 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=44.1
Q ss_pred HHHHHhcCCcEEEEcCC--CC-CC-Cc---hHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 029149 60 FSFLKSLGLRSVIYLCP--EP-YP-DS---NLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIH 132 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~--e~-~~-~~---~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVH 132 (198)
++..+++|++..+++.- .. .. +. ..+.+.+.|...+.+. |..- ...++++.+.++.+.+.-+-|+-+|
T Consensus 124 i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 124 IKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK--DMAG---LLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCC---CCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 35667889887766632 11 11 11 2233456787776554 3211 1346788888888876545789999
Q ss_pred cCCCC
Q 029149 133 CKRGK 137 (198)
Q Consensus 133 C~aG~ 137 (198)
|+.-.
T Consensus 199 ~Hnd~ 203 (275)
T cd07937 199 THDTS 203 (275)
T ss_pred ecCCC
Confidence 98765
No 163
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.17 E-value=1.1e+02 Score=24.88 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=38.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++--|+....+...+.++..+.+...++.+-. +.+.+.++++.+.+.-+ =-++|||.+.
T Consensus 23 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 23 AKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVR-------DEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4567788997665544432111122222334444444554432 25677778877765422 2489999764
No 164
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=39.92 E-value=1e+02 Score=25.09 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
..|.+.|.+.++--|+.+..+...+.....+.+...++.+-. +.+.+.++++.+.+.. +--++|||.+.
T Consensus 30 ~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~-------d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 30 EALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVA-------DEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 456778986555444321101112222333434333444432 2467777777776542 23599999764
No 165
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=39.65 E-value=94 Score=23.55 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=29.6
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHC 133 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC 133 (198)
++...++..|+.+..+ ... +.+++.++++..++ .++|.+|++
T Consensus 112 d~~~~a~a~G~~~~~v--~~~-------~~~el~~al~~a~~-~~gp~vIeV 153 (153)
T PF02775_consen 112 DFAALAEAFGIKGARV--TTP-------DPEELEEALREALE-SGGPAVIEV 153 (153)
T ss_dssp GHHHHHHHTTSEEEEE--SCH-------SHHHHHHHHHHHHH-SSSEEEEEE
T ss_pred CHHHHHHHcCCcEEEE--ccC-------CHHHHHHHHHHHHh-CCCcEEEEc
Confidence 4567778889986533 221 14778888888875 489999985
No 166
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=39.58 E-value=1.7e+02 Score=26.43 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=42.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHh-HhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFL-KANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~-~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
++.|+++||++|+-+-.+... ++.+.+ +..+|+++...=+.. .....+... ...++|..+-|+.|-+
T Consensus 7 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~~i~~v~~~hE~~--------A~~mAdgya---r~tg~~gv~~~t~GpG 74 (432)
T TIGR00173 7 VEELVRLGVRHVVISPGSRST-PLALAAAEHPRLRVHVHIDERS--------AGFFALGLA---KASGRPVAVVCTSGTA 74 (432)
T ss_pred HHHHHHcCCCEEEECCCcccH-HHHHHHHhCCCcEEEEecCCcc--------HHHHHHHHH---hccCCCEEEEECCcch
Confidence 468999999999999877532 233444 335788865433221 111222221 2235566666666666
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 75 ~~N~l~gl~~ 84 (432)
T TIGR00173 75 VANLLPAVIE 84 (432)
T ss_pred HhhhhHHHHH
Confidence 5555555544
No 167
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=39.35 E-value=1.1e+02 Score=29.37 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=33.7
Q ss_pred hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 029149 87 LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 87 ~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
+.+.|...+. +.|..- ...++.+.+.++.+.+.-+-||-+||+.- +|+.+|-++.
T Consensus 163 l~~~Gad~I~--i~Dt~G---~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt---~Gla~An~la 217 (592)
T PRK09282 163 LEEMGCDSIC--IKDMAG---LLTPYAAYELVKALKEEVDLPVQLHSHCT---SGLAPMTYLK 217 (592)
T ss_pred HHHcCCCEEE--ECCcCC---CcCHHHHHHHHHHHHHhCCCeEEEEEcCC---CCcHHHHHHH
Confidence 3456776543 334221 12467777777777665457899999874 4666666664
No 168
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=39.13 E-value=1.3e+02 Score=24.19 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=36.7
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.|+..+.... .....+.++..+-+..-++.+-. +.+.+.++++.+.+.-+. -++|||.+.
T Consensus 19 a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 19 AVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA-------NEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccC-------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 35677789887765543211 11112222333334444444432 246677777776653233 389999864
No 169
>PRK08628 short chain dehydrogenase; Provisional
Probab=39.08 E-value=2e+02 Score=23.28 Aligned_cols=69 Identities=17% Similarity=0.037 Sum_probs=37.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++.-+++... ...+.+++.+-+...++.+-. ..+.+.+.++.+.+.-+ =-++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 24 SLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLT-------DDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 356778899887766654311 222222333433333443321 24567777777665322 2599999863
No 170
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=38.91 E-value=2.7e+02 Score=26.84 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=47.9
Q ss_pred cHHHHHhcCCcEEEE--cCCCCCC--Cc---hHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEE
Q 029149 59 NFSFLKSLGLRSVIY--LCPEPYP--DS---NLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLI 131 (198)
Q Consensus 59 ~~~~L~~~GIktVIn--Lr~e~~~--~~---~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLV 131 (198)
.++..++.|.....+ +...... +. ..+.+.+.|+.. +.+.|..- -+.+.++.+.+..+.+.-+-||-+
T Consensus 128 ~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~--I~IkDtaG---~l~P~~v~~lv~alk~~~~ipi~~ 202 (596)
T PRK14042 128 AIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDS--IAIKDMAG---LLTPTVTVELYAGLKQATGLPVHL 202 (596)
T ss_pred HHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE--EEeCCccc---CCCHHHHHHHHHHHHhhcCCEEEE
Confidence 345667788766555 4433211 11 223345677765 45555322 134677777777776654689999
Q ss_pred EcCCCCChHHHHHHHHHH
Q 029149 132 HCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 132 HC~aG~~RTG~v~a~yL~ 149 (198)
||+.-. |+..+.++.
T Consensus 203 H~Hnt~---Gla~an~la 217 (596)
T PRK14042 203 HSHSTS---GLASICHYE 217 (596)
T ss_pred EeCCCC---CcHHHHHHH
Confidence 998744 555566554
No 171
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=38.81 E-value=1.9e+02 Score=22.55 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=41.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
.+.|+++||++|+-+-..... ++.+.+.+ .+|+++...=+.. .....+... ...++|..+-|+.|-+
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~~i~~v~~rhE~~--------A~~mA~gya---r~tg~~~v~~~t~GpG 74 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSIN-GLMDALRREGKIEFIQVRHEEA--------AAFAASAEA---KLTGKLGVCLGSSGPG 74 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchH-HHHHHHhhcCCCeEEEeCCHHH--------HHHHHHHHH---HHhCCCEEEEECCCCc
Confidence 467899999999998876532 23333333 6788864322110 111111221 2234565555666666
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 75 ~~n~~~~l~~ 84 (164)
T cd07039 75 AIHLLNGLYD 84 (164)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 172
>PLN02790 transketolase
Probab=38.78 E-value=60 Score=31.46 Aligned_cols=51 Identities=18% Similarity=0.112 Sum_probs=34.4
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
...+.++..|++++.+ ++... +.+.+.++++.+.+..++|++|||..-+++
T Consensus 191 ~~~~~f~a~G~~~~~v--dgg~h-----d~~~l~~a~~~a~~~~~~P~lI~~~T~kG~ 241 (654)
T PLN02790 191 DVDKRYEALGWHTIWV--KNGNT-----DYDEIRAAIKEAKAVTDKPTLIKVTTTIGY 241 (654)
T ss_pred hHHHHHHHcCCeEEEE--CCCCC-----CHHHHHHHHHHHHhcCCCeEEEEEEEeecC
Confidence 3455678889999763 33110 246777788876553578999999876654
No 173
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=38.78 E-value=1.2e+02 Score=24.49 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
..|.+.|.+-++--|.+.......+.++..|.+...+..+-. ..+.+.++++.+.+.-+ --++|||.+..
T Consensus 28 ~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 28 EGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVT-------DHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 567778987555444332111122223344555544444432 25677777777655322 34899998653
No 174
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.69 E-value=1.7e+02 Score=23.77 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=38.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+-|+.-+.+. +...+..+..+-+...+.++-. ..+.+.++++.+.+.-+ =-++|||.+.
T Consensus 25 a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 25 AIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLI-------QQKDIDSIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3567788998776544321 1222333444545444444432 25678888877765422 3499999754
No 175
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=38.56 E-value=1.3e+02 Score=27.53 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=46.7
Q ss_pred eEecCCC--CcccHHHHHhcCCcEEEE------cC-----------CCCCCCchHHHhHhCCceEEEeecCCCCCCCCCC
Q 029149 49 IFRSGFP--DSANFSFLKSLGLRSVIY------LC-----------PEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNI 109 (198)
Q Consensus 49 Lyrs~~p--~~~~~~~L~~~GIktVIn------Lr-----------~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~ 109 (198)
+|.=|.+ ++.-++.|+++||+.|=+ +. ....++...+.+++.|++.+ |..+|++
T Consensus 71 vytlG~IIHNp~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~ii-----DATCP~V-- 143 (387)
T PRK13371 71 IWITNEIIHNPSVNQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIV-----DTTCPWV-- 143 (387)
T ss_pred eEEecCCcCCHHHHHHHHhCCCEEEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----ecCCccc--
Confidence 6666654 455678999999988832 21 11123345566677787775 5667764
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 029149 110 PEETIREALKVVLDERNHPLLIHCKRG 136 (198)
Q Consensus 110 ~~~~v~~~l~~i~~~~~~pVLVHC~aG 136 (198)
..+.+.++...+ .++.|++|=..+
T Consensus 144 --~kvh~~v~~~~~-~Gy~iIIiG~~~ 167 (387)
T PRK13371 144 --SKVWNTVEKHKK-KDFTSIIHGKYK 167 (387)
T ss_pred --hHHHHHHHHHHh-CCCEEEEEcCCC
Confidence 334444554443 477777775544
No 176
>PRK06139 short chain dehydrogenase; Provisional
Probab=37.90 E-value=94 Score=27.08 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~a 135 (198)
...|.+.|.+.|+--|.++..+...+.+++.|.+...++.+-. +.+++.++++.+.+.. +--++|||.+
T Consensus 24 a~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 24 AEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVT-------DADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-------CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3567788998776655543111223334455666555555432 2567887877776532 2359999964
No 177
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=37.31 E-value=1.5e+02 Score=23.85 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
..|.+.|.+.|+--+++.......+.++..+.+..-+..+-. ..+.+.++++.+.+..+ -.++|||.+.
T Consensus 18 ~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 18 ERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVS-------DKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 467788987555444321101112223344544443444432 25677777777765423 3599999864
No 178
>PRK08643 acetoin reductase; Validated
Probab=37.16 E-value=1.2e+02 Score=24.42 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=35.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.|+--|+.+........+.+.+-+..-+..+-. ..+.+.++++.+.+.-+ =-++|||.+.
T Consensus 19 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 19 AKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVS-------DRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3567788987655544432111122222333333333333322 24667777777765322 2489999854
No 179
>PTZ00089 transketolase; Provisional
Probab=37.02 E-value=74 Score=30.90 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=33.2
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
...+.++..|.+++. +.+++. +.+.+.++++.+.+..++|++|||..=+++
T Consensus 202 ~~~~~f~a~G~~~i~-v~dG~~------D~~~l~~a~~~a~~~~~~P~~I~~~T~kG~ 252 (661)
T PTZ00089 202 DVEKKYEAYGWHVIE-VDNGNT------DFDGLRKAIEEAKKSKGKPKLIIVKTTIGY 252 (661)
T ss_pred cHHHHHHhcCCcEEE-eCCCCC------CHHHHHHHHHHHHhcCCCcEEEEEEeeecC
Confidence 445667888998876 224430 145677788776554478999999865443
No 180
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=36.80 E-value=1.4e+02 Score=24.27 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=39.0
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.|+..+.+.. .....+.++..+-+..-++.+-. +.+.+.++++.+.+..+. -++|||.+.
T Consensus 24 a~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 24 AVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVT-------VESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35678899988887664421 11122223333444433444432 246677777777654333 389999764
No 181
>PRK06128 oxidoreductase; Provisional
Probab=36.40 E-value=1.6e+02 Score=24.80 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHHhcCCcEEEEcCCCCCC--CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYP--DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~--~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
..|.+.|.+.++.-+..+.. ....+.+++.|-+...++.+-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 73 ~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 73 IAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLK-------DEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 56778899887765443211 1122334445555554554432 25677777777665322 3499999864
No 182
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.38 E-value=95 Score=25.45 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=36.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
.+.|.+.|.+.|+--|+.+......+..+..+.....+.++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 27 a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 27 ALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLA-------HPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3567788996655544432111111222223333333444332 25677777777765322 3499999754
No 183
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=36.32 E-value=84 Score=29.98 Aligned_cols=46 Identities=33% Similarity=0.450 Sum_probs=32.6
Q ss_pred HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 85 EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 85 ~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
+.++..|+.++. +++++. .+.+.++++.+.+ .++|++|||..=+++
T Consensus 201 ~~~~a~G~~~~~-v~DG~D-------~~~l~~a~~~a~~-~~gP~~i~~~T~kG~ 246 (581)
T PRK12315 201 NLFKAMGLDYRY-VEDGND-------IESLIEAFKEVKD-IDHPIVLHIHTLKGK 246 (581)
T ss_pred HHHHhcCCeEEE-eeCCCC-------HHHHHHHHHHHHh-CCCCEEEEEEeecCC
Confidence 456788998875 446652 4667778877644 478999999877765
No 184
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=35.94 E-value=74 Score=23.76 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=30.6
Q ss_pred HHHHHH-CCCCHHHHHHHHHHhhccccCccHHHHHHHcCc
Q 029149 145 GCLRKL-QKWCLSSIFDEYQRFAAAKARLSDQRFIELFDI 183 (198)
Q Consensus 145 a~yL~~-~g~~~~~a~~e~~~~~~~~~~~~~~~fIe~~~~ 183 (198)
.++... .|++.+++++...+++...+..+...+|+.|..
T Consensus 46 Sl~~A~~~G~~~e~i~~~L~~~S~~~lP~~v~~~i~~w~~ 85 (129)
T PF13625_consen 46 SLWRAASAGLTAEEIIEFLERYSKNPLPQNVEQSIEDWAR 85 (129)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455554 899999999999998877655677888888765
No 185
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.79 E-value=1.5e+02 Score=26.45 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHHhcCCcEEEEcCC-----CCC---CC---chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-Cc
Q 029149 61 SFLKSLGLRSVIYLCP-----EPY---PD---SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HP 128 (198)
Q Consensus 61 ~~L~~~GIktVInLr~-----e~~---~~---~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~p 128 (198)
+..++.|++..+++.. +.. ++ ...+.+.+.|...+.++=.... ..+.++.+.++.+.+.-+ .|
T Consensus 169 ~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~-----a~P~~v~~lv~~l~~~~~~~~ 243 (347)
T PLN02746 169 LAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGV-----GTPGTVVPMLEAVMAVVPVDK 243 (347)
T ss_pred HHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCC-----cCHHHHHHHHHHHHHhCCCCe
Confidence 3456789888766642 111 11 1233355678887555422221 246778888888866434 47
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q 029149 129 LLIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 129 VLVHC~aG~~RTG~v~a~yL 148 (198)
+-+||+.-. |+.+|-.+
T Consensus 244 i~~H~Hnd~---GlA~AN~l 260 (347)
T PLN02746 244 LAVHFHDTY---GQALANIL 260 (347)
T ss_pred EEEEECCCC---ChHHHHHH
Confidence 889988644 44444443
No 186
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.78 E-value=2.1e+02 Score=23.17 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=36.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++..+... ...+.++..++.++..-+. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~~~~~---~~~~~l~~~~~~~~~~Dl~---------~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 24 AEAFLREGAKVAVLYNSAE---NEAKELREKGVFTIKCDVG---------NRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHCCCEEEEEeCCcH---HHHHHHHhCCCeEEEecCC---------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3567788987666444322 1122233335554333222 25677778877765433 2499999765
No 187
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=35.45 E-value=58 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=18.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHh
Q 029149 142 CLVGCLRKLQKWCLSSIFDEYQRF 165 (198)
Q Consensus 142 ~v~a~yL~~~g~~~~~a~~e~~~~ 165 (198)
-.+.-||...+|+++.|+..|-..
T Consensus 16 ~~A~~~L~~~~wdle~Av~~y~~~ 39 (43)
T PF14555_consen 16 DVAIQYLEANNWDLEAAVNAYFDD 39 (43)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 567788889999999999987653
No 188
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=35.36 E-value=1.6e+02 Score=23.80 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG~ 137 (198)
...|.+.|.+.|+--+.+.......+..+..+-+...+..+-. ..+.+.++++.+.+.-+. -++|||.+..
T Consensus 28 a~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 28 AITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT-------SEQELSALADFALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567788988766444332111112222333444443444322 256777777776654333 4999998753
No 189
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=35.09 E-value=56 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.570 Sum_probs=17.9
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCC
Q 029149 124 ERNHPLLIHCKRGKHRTGCLVGCLRKLQK 152 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~RTG~v~a~yL~~~g 152 (198)
....+|+++|..|. |+ ..++.+|...|
T Consensus 48 ~~~~~vv~~c~~~~-~a-~~~~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RS-ARAAKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hH-HHHHHHHHHhC
Confidence 35789999999975 55 34445554455
No 190
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=35.01 E-value=2.9e+02 Score=24.90 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=47.9
Q ss_pred HHHHhcCCc--EEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 61 SFLKSLGLR--SVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 61 ~~L~~~GIk--tVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
-+|++.|++ .|+-|..--... ..+.+.++++... +. +.++++.+.........-+|.++=-.|++
T Consensus 67 i~LR~~gi~~~~IlvL~g~~~~~-~~~~~~~~~l~~~---v~---------s~~ql~~l~~~~~~~~~l~vhLkiDTGM~ 133 (360)
T COG0787 67 IELREAGITGAPILVLEGFFPAE-ELELAAAYNLTPV---VN---------SLEQLEALKNAALKNKPLKVHLKIDTGMN 133 (360)
T ss_pred HHHHHcCCCCCCEEEEcCcCChh-hHHHHHHcCCeEE---EC---------CHHHHHHHHHhhhhcCceEEEEEECCCCC
Confidence 468899998 477775332222 2245666676653 22 35677644444333234578888999999
Q ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHH
Q 029149 139 RTGCLVGCLRKLQKWCLSSIFDEYQR 164 (198)
Q Consensus 139 RTG~v~a~yL~~~g~~~~~a~~e~~~ 164 (198)
|- |...+++..++..
T Consensus 134 Rl-----------G~~~~e~~~~~~~ 148 (360)
T COG0787 134 RL-----------GLRPEEAVALAID 148 (360)
T ss_pred cC-----------CCChHHHHHHHHH
Confidence 97 5555555555544
No 191
>PRK09389 (R)-citramalate synthase; Provisional
Probab=34.94 E-value=3.8e+02 Score=25.02 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHhcCCcEEEEcCCCCCC--Cch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYP--DSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~--~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
+.+++.|....+++-..... +.. .+.+.+.|...+.+|=.... ..+.++.+.++.+.+..+-|+-+||+.
T Consensus 121 ~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-----~~P~~~~~lv~~l~~~~~v~l~~H~HN 195 (488)
T PRK09389 121 EYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-----LTPEKTYELFKRLSELVKGPVSIHCHN 195 (488)
T ss_pred HHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-----cCHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 45678888877776543211 112 23345678888766644322 246778878887766556789999998
Q ss_pred CCChHHHHHHHHH
Q 029149 136 GKHRTGCLVGCLR 148 (198)
Q Consensus 136 G~~RTG~v~a~yL 148 (198)
-. |+.+|-.+
T Consensus 196 D~---GlAvANal 205 (488)
T PRK09389 196 DF---GLAVANTL 205 (488)
T ss_pred Cc---cHHHHHHH
Confidence 55 44444444
No 192
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.82 E-value=1.9e+02 Score=23.45 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
...|.+.|.+.++-.+.+.. +...+...+.+-+...++++-. +.+.+.++++.+.+.-+ =.++|||.+..
T Consensus 32 a~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 32 AVALAKAGADIIITTHGTNW-DETRRLIEKEGRKVTFVQVDLT-------KPESAEKVVKEALEEFGKIDILVNNAGTI 102 (258)
T ss_pred HHHHHHCCCEEEEEeCCcHH-HHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 35677889988777665321 1122233333433333444322 25667778877765432 36999998653
No 193
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=34.81 E-value=1.9e+02 Score=23.34 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=34.8
Q ss_pred hcCCcEEEEcCCCCCC---CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 029149 65 SLGLRSVIYLCPEPYP---DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGK 137 (198)
Q Consensus 65 ~~GIktVInLr~e~~~---~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~ 137 (198)
...+..||+-..-... ....+.++..|..+.. +++.+ +.+.+.++++...+ .++|.+|||..=+
T Consensus 125 ~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~-~vdG~-------d~~~l~~a~~~a~~-~~~P~~I~~~T~k 191 (195)
T cd02007 125 KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIG-PVDGH-------NIEALIKVLKEVKD-LKGPVLLHVVTKK 191 (195)
T ss_pred CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccc-eECCC-------CHHHHHHHHHHHHh-CCCCEEEEEEEec
Confidence 3445555554432211 1344445556665554 33332 24667778877654 4789998886544
No 194
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=34.70 E-value=1.9e+02 Score=23.18 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
..+|.+.|.+.++..+.... .+...+.++..+.+..-++++-. ..+.+.++++.+.+.-+. -++|||.+.
T Consensus 23 a~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 23 TVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVS-------KVEDANRLVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35677789887665443221 11122223334444433444432 246677787777654232 499999765
No 195
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.68 E-value=65 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH---HCCCC
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRK---LQKWC 154 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~---~~g~~ 154 (198)
...||+-|.+|.+ |++++--... .+|++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHHCCCc
Confidence 4579999999997 7776654443 26774
No 196
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=34.29 E-value=2e+02 Score=21.56 Aligned_cols=74 Identities=18% Similarity=0.352 Sum_probs=45.2
Q ss_pred cHHHHHhc-CCcEEEEcCC-CCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 029149 59 NFSFLKSL-GLRSVIYLCP-EPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRG 136 (198)
Q Consensus 59 ~~~~L~~~-GIktVInLr~-e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG 136 (198)
....|.++ |+.--+-.-. +...+...+++++.|.+.++.|-.+. ..+..+++.+.+.....|+|-+..|
T Consensus 25 Ga~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~---------TD~e~Al~~~~~~~~~~i~v~Ga~G 95 (123)
T PF04263_consen 25 GANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDY---------TDLEKALEYAIEQGPDEIIVLGALG 95 (123)
T ss_dssp HHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS----------HHHHHHHHHHHTTTSEEEEES-SS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccccccc---------CHHHHHHHHHHHCCCCEEEEEecCC
Confidence 45566677 7654222222 12334567778899999999995443 2456688888776677899988888
Q ss_pred CChHHH
Q 029149 137 KHRTGC 142 (198)
Q Consensus 137 ~~RTG~ 142 (198)
. |-==
T Consensus 96 g-R~DH 100 (123)
T PF04263_consen 96 G-RFDH 100 (123)
T ss_dssp S-SHHH
T ss_pred C-cHHH
Confidence 6 6533
No 197
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=34.26 E-value=1.6e+02 Score=26.21 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChHHHHHHHHHH
Q 029149 127 HPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 127 ~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
-...+.|-+|+ +.+.++-||-
T Consensus 234 prLalNcVGGk--sa~~iar~L~ 254 (354)
T KOG0025|consen 234 PRLALNCVGGK--SATEIARYLE 254 (354)
T ss_pred ceEEEeccCch--hHHHHHHHHh
Confidence 34889999986 5667777773
No 198
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=33.82 E-value=1.8e+02 Score=23.30 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=35.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
.+|.+.|.+.++--|............+..+.+...+..+-. ..+.+.++++.+.+.. +--++|||.+.
T Consensus 22 ~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 22 LALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT-------DEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 456677987655444322111111222333444433444322 2567777777765432 23489999864
No 199
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=33.54 E-value=2.4e+02 Score=28.69 Aligned_cols=141 Identities=15% Similarity=0.083 Sum_probs=74.4
Q ss_pred eEecCCCCccc---HHHHHhc-CCcE-EEEcCCCCCCCchHHHhHhCCc---------eEEEeecCCCCCCCCCCCHHHH
Q 029149 49 IFRSGFPDSAN---FSFLKSL-GLRS-VIYLCPEPYPDSNLEFLKANGI---------QLFQFGIDGCKEPFVNIPEETI 114 (198)
Q Consensus 49 Lyrs~~p~~~~---~~~L~~~-GIkt-VInLr~e~~~~~~~~~~~~~gI---------~~~~lpi~~~~~p~~~~~~~~v 114 (198)
|..||....+- -+.|++. ||+. |||+.+-.+-+...-.++.+++ .|+.--+.+...|.+.. .+.+
T Consensus 737 LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~-~D~~ 815 (896)
T PRK13012 737 LLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAA-TDYV 815 (896)
T ss_pred EEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEe-cchH
Confidence 56666544332 2467776 9975 9999886422111111122221 11111111111222211 1222
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHh--hcccc-CccHHHHHHHcCcccccccCC
Q 029149 115 REALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRF--AAAKA-RLSDQRFIELFDISSFKRLPM 191 (198)
Q Consensus 115 ~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~--~~~~~-~~~~~~fIe~~~~~~~~~~~~ 191 (198)
+..-+.+.+..+.++.+.+..|.+|||.--. ++...|++.+.|....... ..+.+ .....+-|+.|..+--+-+|.
T Consensus 816 ~aVae~l~~~~~~~~~~LGvD~FG~Sg~~~~-L~~~fGlda~~Iv~aal~~La~~g~~~~~~~~~a~~~~~~~~~~~~~~ 894 (896)
T PRK13012 816 RAVPEQIRAFVPARYVTLGTDGFGRSDTRAA-LRRFFEVDRHSIVLAALKALADDGEVERTVVAEAIERYGIDDDKTPPW 894 (896)
T ss_pred HHHHHHHHHhCCCCeEEEeeCCCCCCCCHHH-HHHHhCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCCCCC
Confidence 2222333333356888888999999998664 4456899988776544433 22222 246677789998887665554
No 200
>PRK08589 short chain dehydrogenase; Validated
Probab=33.32 E-value=1.6e+02 Score=24.24 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=38.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG~ 137 (198)
...|.+.|.+.|+.-|.+.. ....+.+++.+.+...++++-. ..+.+.++++.+.+.-+. -++|||.+..
T Consensus 23 a~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 23 AIALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDIS-------DEQQVKDFASEIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecC-------CHHHHHHHHHHHHHHcCCcCEEEECCCCC
Confidence 34677889887776554211 1122223334444444444432 246677777777654232 4999998643
No 201
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.17 E-value=2.7e+02 Score=22.79 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhC-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKAN-GIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~-gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~a 135 (198)
...|.+.|.+.|+.-|.....+...+..++. +-+...++++-. +.+.+.++++.+.+.-+ =-++|||.+
T Consensus 26 a~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 26 ARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVT-------SDEEITACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCC-------CHHHHHHHHHHHHHhCCCccEEEECcc
Confidence 4567788998766544322112233333322 333333444322 25778888888766422 359999975
No 202
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=33.13 E-value=56 Score=29.47 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 125 RNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.++||+++|.+|. |+ ..++.+|...|++
T Consensus 342 ~d~~iVvyC~~G~-rS-~~aa~~L~~~G~~ 369 (392)
T PRK07878 342 QDRTIVLYCKTGV-RS-AEALAALKKAGFS 369 (392)
T ss_pred CCCcEEEEcCCCh-HH-HHHHHHHHHcCCC
Confidence 4789999999987 76 4455566667765
No 203
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.06 E-value=3.6e+02 Score=24.13 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=44.7
Q ss_pred HHHHhcCCcEEEEcCCCC-C-CCc---hHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 61 SFLKSLGLRSVIYLCPEP-Y-PDS---NLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~-~-~~~---~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
+..++.|+...++.-... . ++. ..+.+.+.|...+.++=... ...+.++.+.++.+.+.-+-|+-+||+.
T Consensus 123 ~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~l~~H~Hn 197 (378)
T PRK11858 123 EYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVG-----ILDPFTMYELVKELVEAVDIPIEVHCHN 197 (378)
T ss_pred HHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC-----CCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456778998777643221 1 112 23334567888766653222 1346788888888766546789999997
Q ss_pred CC
Q 029149 136 GK 137 (198)
Q Consensus 136 G~ 137 (198)
-.
T Consensus 198 d~ 199 (378)
T PRK11858 198 DF 199 (378)
T ss_pred Cc
Confidence 55
No 204
>PRK07454 short chain dehydrogenase; Provisional
Probab=32.75 E-value=1.6e+02 Score=23.56 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++--|+........+.++..+-+...+..+-. +.+.+.++++.+.+.-+ --++|||.+.
T Consensus 23 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 23 ALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLS-------NPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4567778886544334322111122222232333333333322 24667777777765322 3499999754
No 205
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=31.99 E-value=1.1e+02 Score=26.74 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWC 154 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~ 154 (198)
.+.+.+.+..+-=....+|+|.|..|...++-+ +..|...|.+
T Consensus 88 ~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~-~~~L~~~G~~ 130 (320)
T PLN02723 88 EEAFAAAVSALGIENKDGVVVYDGKGIFSAARV-WWMFRVFGHE 130 (320)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHH-HHHHHHcCCC
Confidence 466666666552234679999998886443333 3344445554
No 206
>PRK05866 short chain dehydrogenase; Provisional
Probab=31.83 E-value=1.5e+02 Score=25.13 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=36.8
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
..|.+.|.+.++--|..+..+...+.+...+.....+..+-. +.+.+.++++.+.+.-+ --++|||.+..
T Consensus 58 ~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~-------d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 58 EQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLS-------DLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 457778987766555432111112222233444333444322 24667777777655433 35999998654
No 207
>PRK07791 short chain dehydrogenase; Provisional
Probab=31.80 E-value=2.1e+02 Score=23.97 Aligned_cols=69 Identities=12% Similarity=-0.010 Sum_probs=37.3
Q ss_pred HHHHhcCCcEEEEcCCCC------CCCchH---HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEE
Q 029149 61 SFLKSLGLRSVIYLCPEP------YPDSNL---EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLL 130 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~------~~~~~~---~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVL 130 (198)
..|.+.|.+.|+.-+... ..+... +.+++.+.+...++.+-. +.+.+.++++.+.+.- .-.++
T Consensus 24 ~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~-------~~~~v~~~~~~~~~~~g~id~l 96 (286)
T PRK07791 24 LAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIA-------DWDGAANLVDAAVETFGGLDVL 96 (286)
T ss_pred HHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCC-------CHHHHHHHHHHHHHhcCCCCEE
Confidence 467788988776544331 001111 222333544444444332 2567888888776542 23599
Q ss_pred EEcCCC
Q 029149 131 IHCKRG 136 (198)
Q Consensus 131 VHC~aG 136 (198)
|||.+.
T Consensus 97 v~nAG~ 102 (286)
T PRK07791 97 VNNAGI 102 (286)
T ss_pred EECCCC
Confidence 999653
No 208
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.78 E-value=1.3e+02 Score=24.25 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=36.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
...|.+.|.+.|+--|.........+.+.+.+-+...+.++-. ..+.+.++++.+.+.- +-.++|||.++.
T Consensus 25 ~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 96 (252)
T PRK07035 25 AKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIG-------EMEQIDALFAHIRERHGRLDILVNNAAAN 96 (252)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 4567788985444333221111122222334444444444332 2456776777665532 346999998753
No 209
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=31.63 E-value=27 Score=25.36 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=8.6
Q ss_pred CcEEEEcCCC
Q 029149 127 HPLLIHCKRG 136 (198)
Q Consensus 127 ~pVLVHC~aG 136 (198)
..|||||.=|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5799999876
No 210
>PRK06701 short chain dehydrogenase; Provisional
Probab=31.58 E-value=2.2e+02 Score=23.92 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.++--+.... .....+.++..+.+...++.+-. ..+.+.++++.+.+..++ -++|||.+.
T Consensus 63 a~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 63 AVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVS-------DEAFCKDAVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 35677789886655444321 11122223344545544554432 246677777776654333 489999865
No 211
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.54 E-value=1.4e+02 Score=24.61 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=37.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~a 135 (198)
...|.+.|.+.|+.-+.+...+...+..+..|- .+.++.+-. +.+++.++++.+.+.-+ =-++|||.+
T Consensus 25 a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~-------~~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (261)
T PRK08690 25 AKACREQGAELAFTYVVDKLEERVRKMAAELDS-ELVFRCDVA-------SDDEINQVFADLGKHWDGLDGLVHSIG 93 (261)
T ss_pred HHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC-ceEEECCCC-------CHHHHHHHHHHHHHHhCCCcEEEECCc
Confidence 356778999887764433211112222222232 223343322 35778888888766422 349999974
No 212
>PRK06123 short chain dehydrogenase; Provisional
Probab=31.28 E-value=1.7e+02 Score=23.43 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEEcCCCC-CCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCCC
Q 029149 61 SFLKSLGLRSVIYLCPEP-YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRGK 137 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~-~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG~ 137 (198)
..|.+.|.+.|+..+... ......+..++.+.+...++.+-. ..+.+.++++.+.+..+. -++|||.+..
T Consensus 20 ~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06123 20 LLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVA-------DEADVLRLFEAVDRELGRLDALVNNAGIL 91 (248)
T ss_pred HHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccC-------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 457778877655543321 111122223344444444444432 245677777766553233 3899998643
No 213
>PRK07677 short chain dehydrogenase; Provisional
Probab=31.22 E-value=1.8e+02 Score=23.48 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=35.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
..|.+.|.+.|+.-|.........+.++..+-....++++-. +.+.+.++++.+.+.-+ --++|||.++.
T Consensus 19 ~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 19 KRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVR-------NPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-------CHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 456778986555444432111111222222323333343332 25667777777654322 25999998653
No 214
>PRK12939 short chain dehydrogenase; Provisional
Probab=31.13 E-value=2.1e+02 Score=22.81 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
...|.+.|.+.++--+.++......+.++..+.+..-++++-. +.+.+.++++.+.+.- +--++|||.+..
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 24 AEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLA-------DPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567788987555433321111112222333333332333322 2466777777665532 235999998753
No 215
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=30.90 E-value=1.5e+02 Score=24.14 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
...|.+.|.+-++.-|.+.......+.+++.+ ....++.+-. +.+.+.++++.+.+.- +--++|||.+.
T Consensus 17 a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~-------d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 17 ARELLKKGARVVISSRNEENLEKALKELKEYG-EVYAVKADLS-------DKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 35677889876665444321111111122222 2222333321 2567888887776532 23499999764
No 216
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=30.85 E-value=1.5e+02 Score=22.67 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~ 153 (198)
.+.+.+.+..+ ..+.+|+|+|..|. ++..+ +..|...|.
T Consensus 36 ~~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~a-a~~L~~~G~ 74 (145)
T cd01535 36 RAQLAQALEKL--PAAERYVLTCGSSL-LARFA-AADLAALTV 74 (145)
T ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCh-HHHHH-HHHHHHcCC
Confidence 34455455443 24689999999874 55444 444444443
No 217
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=30.77 E-value=1.9e+02 Score=23.80 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
...|.+.|.+.++--|.++......+..+..+-+...+..+-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 27 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 27 AKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVL-------DKESLEQARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3567788987655444332111112222333444444444432 2456777777665532 33599999864
No 218
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=30.67 E-value=78 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=15.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 029149 128 PLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 128 pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
.|++.|.+|.+-+-++..-+..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~ 23 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRK 23 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5899999999765444554443
No 219
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=30.65 E-value=1.7e+02 Score=26.30 Aligned_cols=88 Identities=8% Similarity=0.054 Sum_probs=47.0
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCC--CC---CCCCCHHHHHHHHHHHHh
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCK--EP---FVNIPEETIREALKVVLD 123 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~--~p---~~~~~~~~v~~~l~~i~~ 123 (198)
+|.+..-+..++++..++||.+| ++-+...-....+.+.+..+ .+++...+.. .+ ...++.+++.++++.+.+
T Consensus 84 if~gp~K~~~~l~~a~~~Gv~~i-~vDS~~El~~i~~~~~~~~v-~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~ 161 (394)
T cd06831 84 IYTNPCKQASQIKYAAKVGVNIM-TCDNEIELKKIARNHPNAKL-LLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAKE 161 (394)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEE-EECCHHHHHHHHHhCCCCcE-EEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 67777778888988889999775 44443211111111111111 2233222211 11 113456777777777665
Q ss_pred cCCCcEEEEcCCCCC
Q 029149 124 ERNHPLLIHCKRGKH 138 (198)
Q Consensus 124 ~~~~pVLVHC~aG~~ 138 (198)
..-..+-+||+.|..
T Consensus 162 ~~l~~~Gih~HiGS~ 176 (394)
T cd06831 162 LDVQIVGVKFHVSSS 176 (394)
T ss_pred CCCeEEEEEEECCCC
Confidence 433567788887765
No 220
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=30.50 E-value=3e+02 Score=26.39 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=38.1
Q ss_pred EEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCH----HHHHHHHHHHHhcCC--C-cEEEEcCCCC
Q 029149 70 SVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPE----ETIREALKVVLDERN--H-PLLIHCKRGK 137 (198)
Q Consensus 70 tVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~----~~v~~~l~~i~~~~~--~-pVLVHC~aG~ 137 (198)
.|+||+++. .+.+++-+.|++.+-+....-+......+. +.+.++++.+.+..+ + -++=||.+|.
T Consensus 229 YIlDL~P~~---SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGt 300 (560)
T TIGR01839 229 YIFDLSPEK---SFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGL 300 (560)
T ss_pred heeecCCcc---hHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchH
Confidence 377777664 466777788998887766543221112222 245556666654322 2 3777998865
No 221
>PRK06114 short chain dehydrogenase; Provisional
Probab=30.45 E-value=2.8e+02 Score=22.39 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYP-DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~-~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
...|.+.|.+.|+.-+++... ....+.++..+-+...++.+-. +.+.+.++++.+.+.-+ --++|||.+..
T Consensus 25 a~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 25 AIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVT-------SKADLRAAVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 356778898777665543210 1122223333434444444432 24667777777655322 24999998643
No 222
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=30.28 E-value=1.8e+02 Score=24.69 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=35.6
Q ss_pred CCcccHHHHHhcCCcEE-EEcCCCCCCCchHHHhHhCCceEEEeec
Q 029149 55 PDSANFSFLKSLGLRSV-IYLCPEPYPDSNLEFLKANGIQLFQFGI 99 (198)
Q Consensus 55 p~~~~~~~L~~~GIktV-InLr~e~~~~~~~~~~~~~gI~~~~lpi 99 (198)
+++++++.+++.|-+.+ |++...-..+.-++.++..|++.+..|.
T Consensus 5 i~a~di~~~~~~g~~~~~i~~~~~iiTP~Ar~~a~~~g~~~~~~~~ 50 (233)
T PRK15457 5 ITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFTITECDE 50 (233)
T ss_pred eeHHHHHHHHhcCCeEEEEecCCcEECcchhhhHHhcCcEEEeccc
Confidence 45778999999998887 7766665444558888999999999877
No 223
>PRK06138 short chain dehydrogenase; Provisional
Probab=30.22 E-value=2.2e+02 Score=22.66 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHh--CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKA--NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~--~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
.+|.+.|.+.++--|..+ ...+..+. .+.+...++.+-. ..+.+.++++.+.+.-+ --++|||.+-
T Consensus 23 ~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 23 KLFAREGARVVVADRDAE---AAERVAAAIAAGGRAFARQGDVG-------SAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHCCCeEEEecCCHH---HHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 457778877655555532 11111111 2333333333322 25677778877765322 3499999874
No 224
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=30.20 E-value=2e+02 Score=24.95 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=39.2
Q ss_pred eEecCCC--CcccHHHHHhcCCcEEEEcCC------------CCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHH
Q 029149 49 IFRSGFP--DSANFSFLKSLGLRSVIYLCP------------EPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETI 114 (198)
Q Consensus 49 Lyrs~~p--~~~~~~~L~~~GIktVInLr~------------e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v 114 (198)
+|.=|.+ ++.-++.|++.||..+++--+ ...++...+.+++.|++.+ |..+|++ ..+
T Consensus 32 iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~gl~vi-----DaTCP~V----~kv 102 (280)
T TIGR00216 32 VYTLGPIVHNPQVVERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREELEKKGLEVI-----DATCPLV----TKV 102 (280)
T ss_pred eEEecCCccCHHHHHHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----eCCCccc----HHH
Confidence 5655553 455677888888744333211 1223345566677777764 4556653 233
Q ss_pred HHHHHHHHhcCCCcEEEEc
Q 029149 115 REALKVVLDERNHPLLIHC 133 (198)
Q Consensus 115 ~~~l~~i~~~~~~pVLVHC 133 (198)
...++.+.+ .++.|+++=
T Consensus 103 ~~~v~~~~~-~Gy~iiiiG 120 (280)
T TIGR00216 103 HNAVKKYAK-EGYHVILIG 120 (280)
T ss_pred HHHHHHHHh-CCCEEEEEe
Confidence 334444433 355555543
No 225
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.16 E-value=2.7e+02 Score=21.91 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEEcCCCC-CCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEP-YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~-~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
...|.+.|.+ |+-+.... ......+.++..+.+...+..+-. ..+.+.++++.+.+.- +--++|||.+..
T Consensus 22 ~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 93 (246)
T PRK05653 22 ALRLAADGAK-VVIYDSNEEAAEALAAELRAAGGEARVLVFDVS-------DEAAVRALIEAAVEAFGALDILVNNAGIT 93 (246)
T ss_pred HHHHHHCCCE-EEEEeCChhHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3567778988 45444332 111112223334544443333322 2456666776664432 235899998764
No 226
>PRK12743 oxidoreductase; Provisional
Probab=30.04 E-value=2.4e+02 Score=22.86 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG~ 137 (198)
...|.+.|.+.++..+.... .....+..+..|-+...+.++-. ..+.+.++++.+.+.-+. -++|||.+..
T Consensus 19 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 19 ALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLS-------DLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 35677889887776554321 11112223344544444444432 246777777777654232 4899997643
No 227
>smart00400 ZnF_CHCC zinc finger.
Probab=30.02 E-value=57 Score=20.66 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.6
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHH
Q 029149 130 LIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDE 161 (198)
Q Consensus 130 LVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e 161 (198)
..||.+. ++.|-++.++..+.|.+..+|++.
T Consensus 23 ~~~Cf~c-g~gGd~i~fv~~~~~~sf~eA~~~ 53 (55)
T smart00400 23 FFHCFGC-GAGGNVISFLMKYDKLSFVEAVKK 53 (55)
T ss_pred EEEEeCC-CCCCCHHHHHHHHHCcCHHHHHHH
Confidence 5789864 478888999999999999999874
No 228
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.97 E-value=2.9e+02 Score=22.60 Aligned_cols=69 Identities=9% Similarity=0.056 Sum_probs=36.4
Q ss_pred cHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCC
Q 029149 59 NFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKR 135 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~a 135 (198)
-...|.+.|.+-|+.-+.+.......+..++.+- .+.++++-. +.+++.++++.+.+.- .--++|||.+
T Consensus 28 ~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~-~~~~~~D~~-------~~~~v~~~~~~~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 28 CARAFRALGAELAVTYLNDKARPYVEPLAEELDA-PIFLPLDVR-------EPGQLEAVFARIAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhcc-ceEEecCcC-------CHHHHHHHHHHHHHHcCCCCEEEEcCc
Confidence 3456778899877765543211112222222221 122333321 2577888888876542 2359999974
No 229
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.92 E-value=2.1e+02 Score=22.74 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=36.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
..+|.+.|.+-|+--|+........+..+..+-+...+..+.. ..+.+.++++.+.+.. +=.++|||.+..
T Consensus 24 ~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 24 AIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS-------DYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 3567788996555444332111111222333433333444432 2466777777765432 234999998654
No 230
>PRK06182 short chain dehydrogenase; Validated
Probab=29.89 E-value=2.3e+02 Score=23.16 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.++.-|..+ ...+ ....++.++..-+.+ .+.+.++++.+.+..++ -++|||.+.
T Consensus 20 a~~l~~~G~~V~~~~r~~~---~l~~-~~~~~~~~~~~Dv~~---------~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 20 ARRLAAQGYTVYGAARRVD---KMED-LASLGVHPLSLDVTD---------EASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHCCCEEEEEeCCHH---HHHH-HHhCCCeEEEeeCCC---------HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3466778987666555432 1222 233466665443332 46677777777654333 499999754
No 231
>PRK06194 hypothetical protein; Provisional
Probab=29.89 E-value=2.4e+02 Score=23.15 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=36.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
...|.+.|.+.++--+..+......+.....+.+...+..+-. ..+++.++++.+.+..+ --++|||.+..
T Consensus 23 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 23 ARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVS-------DAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567788987554333321101111222233555544444432 24677777777655322 35999998764
No 232
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.57 E-value=2.1e+02 Score=23.21 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh--CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA--NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~--~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
...|.+.|.+.|+--|.++......+.++. .+.+...++.+-. ..+.+.++++.+.+.- +--++|||.+.
T Consensus 24 a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 24 ARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVT-------DAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCC-------CHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 356778898766544433211111111222 2333333444322 2466777887776542 23489999753
No 233
>PRK05876 short chain dehydrogenase; Provisional
Probab=29.02 E-value=1.7e+02 Score=24.38 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=36.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~a 135 (198)
...|.+.|.+.|+--+....-....+.++..+.+..-++.+-. ..+.+.++++.+.+.-+ --++|||.+
T Consensus 23 a~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 23 GTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVR-------HREEVTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3567788998766554432111111222334544443444322 25677778777655322 248999975
No 234
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=28.97 E-value=3e+02 Score=21.94 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
..+|.+.|.+.|+--|... +...+..++.+-+...++.+-. ..+.+.++++.+.+..+ --++|||.+..
T Consensus 22 a~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 22 AVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLS-------DIEAIKALVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567788986655444321 1222333344433333444332 24677778777665433 34899997654
No 235
>PRK07109 short chain dehydrogenase; Provisional
Probab=28.92 E-value=1.7e+02 Score=25.43 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=39.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++--|++.-.+...+.++..|.+...++.+-. +.+.+.++++.+.+.-+ --++|||.+.
T Consensus 25 a~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 25 ARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVA-------DAEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCC-------CHHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 3567788987666555432111122233445555555555432 25677777777655322 3499999764
No 236
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=28.67 E-value=4.1e+02 Score=23.37 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=50.9
Q ss_pred eEecCCCCc---ccHHHH----H-hcC----CcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCC-----CCCCH
Q 029149 49 IFRSGFPDS---ANFSFL----K-SLG----LRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPF-----VNIPE 111 (198)
Q Consensus 49 Lyrs~~p~~---~~~~~L----~-~~G----IktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~-----~~~~~ 111 (198)
.|.||.|+. .++..| + ..+ +..-+..+++.......+.+++.|+..+++.++...... ..-+.
T Consensus 56 ~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~ 135 (360)
T TIGR00539 56 FIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSA 135 (360)
T ss_pred EeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCH
Confidence 456677874 444332 2 222 233444555555555567778899999999998653211 01245
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCC
Q 029149 112 ETIREALKVVLDERNHPLLIHCKRGK 137 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~~pVLVHC~aG~ 137 (198)
+++.++++.+.+..-.+|-++=.-|.
T Consensus 136 ~~~~~ai~~l~~~G~~~v~~dli~Gl 161 (360)
T TIGR00539 136 KNIAPAIETALKSGIENISLDLMYGL 161 (360)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccCCC
Confidence 67777888776542234656555554
No 237
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.54 E-value=1.9e+02 Score=24.16 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~a 135 (198)
-..|.+.|.+.|+.-|.+...+...+..++.+-. ..++++-. +.+.+.++++.+.+.-+ --+||||.+
T Consensus 24 A~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~-------d~~~v~~~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 24 AKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVS-------KPEHFKSLAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCC-------CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 3467788998777655532111122222333332 22333322 25678888888765422 249999975
No 238
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=28.51 E-value=3.3e+02 Score=25.63 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
++.|+++||++|+-+-..... ++.+.+.+.+|+++.. .+.. ....+..... ...++|..+-|++|-+=
T Consensus 23 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~i~~--~hE~------~A~~~A~gya---r~tg~~gv~~~t~GPG~ 90 (571)
T PRK07710 23 IEALEKEGVEVIFGYPGGAVL-PLYDALYDCGIPHILT--RHEQ------GAIHAAEGYA---RISGKPGVVIATSGPGA 90 (571)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEe--CCHH------HHHHHHHHHH---HHhCCCeEEEECCCccH
Confidence 478999999999999876532 3444555678888643 2110 1111222222 22366777777778776
Q ss_pred HHHHHHHHH
Q 029149 140 TGCLVGCLR 148 (198)
Q Consensus 140 TG~v~a~yL 148 (198)
+-.+.+++-
T Consensus 91 ~N~~~gl~~ 99 (571)
T PRK07710 91 TNVVTGLAD 99 (571)
T ss_pred HHHHHHHHH
Confidence 666665554
No 239
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=28.34 E-value=1.5e+02 Score=22.71 Aligned_cols=75 Identities=17% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHh--cCCcEEEEcCCCCCC--CchHHH-hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 61 SFLKS--LGLRSVIYLCPEPYP--DSNLEF-LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 61 ~~L~~--~GIktVInLr~e~~~--~~~~~~-~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
..+.+ .|+.++|++-.+... .+..++ .++...+.+-+-++.-.. .+.+.++++.+. ..+||++ ++.
T Consensus 19 ~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d------~~~f~~~~~~a~--~~KPVv~-lk~ 89 (138)
T PF13607_consen 19 DWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGD------GRRFLEAARRAA--RRKPVVV-LKA 89 (138)
T ss_dssp HHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-------HHHHHHHHHHHC--CCS-EEE-EE-
T ss_pred HHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCC------HHHHHHHHHHHh--cCCCEEE-EeC
Confidence 44444 688999999987522 122222 345677888888887543 233444444433 2489988 777
Q ss_pred CCChHHHHH
Q 029149 136 GKHRTGCLV 144 (198)
Q Consensus 136 G~~RTG~v~ 144 (198)
|..-.|.-+
T Consensus 90 Grt~~g~~a 98 (138)
T PF13607_consen 90 GRTEAGARA 98 (138)
T ss_dssp ---------
T ss_pred CCchhhhhh
Confidence 764444333
No 240
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=28.28 E-value=1e+02 Score=26.99 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHH
Q 029149 111 EETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL 148 (198)
.+.+...+..-.=...+||.+-|..|..-.=+++++++
T Consensus 221 ~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r 258 (286)
T KOG1529|consen 221 AEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALER 258 (286)
T ss_pred HHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHh
Confidence 45566555443223478999999998854444444444
No 241
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=28.08 E-value=1.7e+02 Score=22.80 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHhcCCcEEEEcCCC-CCCC---chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcE--EEEc
Q 029149 60 FSFLKSLGLRSVIYLCPE-PYPD---SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPL--LIHC 133 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e-~~~~---~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pV--LVHC 133 (198)
...|.+.|-++||-+... .... ...+.++..|.+...+.++-. ..+++.++++.+.+. .+|| .|||
T Consensus 17 a~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~-------d~~~v~~~~~~~~~~-~~~i~gVih~ 88 (181)
T PF08659_consen 17 ARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVT-------DPEAVAAALAQLRQR-FGPIDGVIHA 88 (181)
T ss_dssp HHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TT-------SHHHHHHHHHTSHTT-SS-EEEEEE-
T ss_pred HHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCcc-------CHHHHHHHHHHHHhc-cCCcceeeee
Confidence 356778888887776655 2111 123345667888777777753 257788888776543 4676 9999
Q ss_pred CC
Q 029149 134 KR 135 (198)
Q Consensus 134 ~a 135 (198)
..
T Consensus 89 ag 90 (181)
T PF08659_consen 89 AG 90 (181)
T ss_dssp --
T ss_pred ee
Confidence 65
No 242
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.05 E-value=1.2e+02 Score=20.62 Aligned_cols=35 Identities=14% Similarity=-0.011 Sum_probs=24.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEE
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQ 96 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~ 96 (198)
..|++.|+++.+|++.......+.. +.+.|+.|+=
T Consensus 25 ~~Lr~~g~~v~~d~~~~~l~k~i~~-a~~~g~~~~i 59 (94)
T cd00861 25 AELQAAGVDVLLDDRNERPGVKFAD-ADLIGIPYRI 59 (94)
T ss_pred HHHHHCCCEEEEECCCCCcccchhH-HHhcCCCEEE
Confidence 4677889999999987654433433 4667777653
No 243
>PRK07890 short chain dehydrogenase; Provisional
Probab=27.91 E-value=1.9e+02 Score=23.23 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=35.4
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
..|.+.|.+.++--|+........+..+..+.++..+..+-. +.+.+.++++.+.+.-+. -++|||.+.
T Consensus 23 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 23 VRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDIT-------DEDQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCC-------CHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 467788986555444432111111222233444444444432 246677777776554333 499999854
No 244
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=27.76 E-value=2.5e+02 Score=22.58 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
...|.+.|.+-|+.-|.........+.++..+.+...++.+-. +.+.+.++++.+.+.- +--++|||.+..
T Consensus 26 a~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 97 (254)
T PRK08085 26 ATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVT-------HKQEVEAAIEHIEKDIGPIDVLINNAGIQ 97 (254)
T ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3567788987766555432111111222333444444444432 2467777777765532 235999998653
No 245
>PRK07062 short chain dehydrogenase; Provisional
Probab=27.38 E-value=2.6e+02 Score=22.63 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=36.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhC--CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKAN--GIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~--gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.|+.-|..+......+.+... +.+...++.+-. ..+.+.++++.+.+.-+ =-++|||.+.
T Consensus 25 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 25 VELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVL-------DEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3567788998766655432111111112221 334444444432 25677777777765322 2489999653
No 246
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=27.36 E-value=3.3e+02 Score=21.97 Aligned_cols=68 Identities=21% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRGK 137 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG~ 137 (198)
..|.+.|.+-|+--+.+. ....+.+++.+.+...+.++-. ..+.+.++++.+.+.-+. -++|||.+..
T Consensus 28 ~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~D~li~~Ag~~ 96 (253)
T PRK08993 28 LGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLR-------KIDGIPALLERAVAEFGHIDILVNNAGLI 96 (253)
T ss_pred HHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 467788987553212111 1122223334444444444432 256788888777654333 3999998653
No 247
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.17 E-value=51 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEcCCCC
Q 029149 111 EETIREALKVVLDE---RNHPLLIHCKRGK 137 (198)
Q Consensus 111 ~~~v~~~l~~i~~~---~~~pVLVHC~aG~ 137 (198)
++.|....+.+... .++.++|||....
T Consensus 78 DdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 78 DDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred hHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 34566666666553 3678999998755
No 248
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=27.16 E-value=2.5e+02 Score=20.38 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=49.2
Q ss_pred eEecCCCCccc------HHHHHhcCCcE-EEEcCCCCCC----------------CchHHHhHhCCc-eEEEeecCCCCC
Q 029149 49 IFRSGFPDSAN------FSFLKSLGLRS-VIYLCPEPYP----------------DSNLEFLKANGI-QLFQFGIDGCKE 104 (198)
Q Consensus 49 Lyrs~~p~~~~------~~~L~~~GIkt-VInLr~e~~~----------------~~~~~~~~~~gI-~~~~lpi~~~~~ 104 (198)
|+.++.|+.+. +..+.+.|.+. |+.++..+.. ....++++..|+ +++.+.+.|...
T Consensus 1 Lvi~aHpDDe~l~~gg~i~~~~~~g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~ 80 (128)
T PF02585_consen 1 LVIAAHPDDEELGCGGTIAKLAEAGHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQL 80 (128)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHTT-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSC
T ss_pred CEEEECCCchHHhhHHHHHHHHhcCCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCc
Confidence 46677787653 45666778866 5556553211 123455677899 888888887653
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 029149 105 PFVNIPEETIREALKVVLDE-RNHPLLIHCKRGK 137 (198)
Q Consensus 105 p~~~~~~~~v~~~l~~i~~~-~~~pVLVHC~aG~ 137 (198)
+. ...+.+.+.++.+++. ++.-|+.|-..|.
T Consensus 81 ~~--~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 81 PG--WSWEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp TC--HHHHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred cc--ccHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 31 1245566666666643 3455777777776
No 249
>PRK07774 short chain dehydrogenase; Provisional
Probab=27.01 E-value=2.5e+02 Score=22.43 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=34.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.|+--|.+.......+..++.+-....+..+-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 23 a~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 23 AEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS-------DPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3566778987665544432111111222222222323333321 24567767766654322 2599999975
No 250
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=26.92 E-value=2e+02 Score=22.50 Aligned_cols=45 Identities=24% Similarity=0.153 Sum_probs=26.8
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
++...++..|+.++.+.-.+ +.+.+.++++..++ .++|.+|++..
T Consensus 132 d~~~~a~a~G~~~~~v~~~~--------~l~~~~~al~~a~~-~~gp~lI~v~~ 176 (178)
T cd02008 132 DIEALVRAIGVKRVVVVDPY--------DLKAIREELKEALA-VPGVSVIIAKR 176 (178)
T ss_pred CHHHHHHHCCCCEEEecCcc--------CHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 35556677777776542221 13445456766654 47899998753
No 251
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.75 E-value=2.1e+02 Score=26.69 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=32.4
Q ss_pred hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 029149 87 LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 87 ~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
+.+.|+.. +.+.|..- -..+..+.+.+..+.+.-+-||-+||+.-. |+.+|-++.
T Consensus 162 l~~~Gad~--I~i~Dt~G---~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~---GlA~AN~la 216 (467)
T PRK14041 162 LVDMGVDS--ICIKDMAG---LLTPKRAYELVKALKKKFGVPVEVHSHCTT---GLASLAYLA 216 (467)
T ss_pred HHHcCCCE--EEECCccC---CcCHHHHHHHHHHHHHhcCCceEEEecCCC---CcHHHHHHH
Confidence 34566654 33444321 124677777777776654679999998644 555555553
No 252
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=26.73 E-value=2.7e+02 Score=26.06 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCcEEEEcCCCCCCCchHHHhHhCCc---eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 67 GLRSVIYLCPEPYPDSNLEFLKANGI---QLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 67 GIktVInLr~e~~~~~~~~~~~~~gI---~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
++...|-+++++-.....+.+.-.|+ ..+.++.+..+. +..+++++-+....++-..|.+|.|++|.-
T Consensus 194 ~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gk----m~~~dLe~kile~k~kg~~Pf~vnaTaGTT 264 (510)
T KOG0629|consen 194 ALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGK----MIPDDLEKKILEAKAKGGVPFFVNATAGTT 264 (510)
T ss_pred cCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCc----cchHHHHHHHHHHHhcCCCCeEEEecCCce
Confidence 46677777777644456666666664 334444443331 334555544433333323478888888763
No 253
>PRK06172 short chain dehydrogenase; Provisional
Probab=26.57 E-value=2.5e+02 Score=22.57 Aligned_cols=70 Identities=6% Similarity=0.041 Sum_probs=36.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
..+|.+.|.+.++--|.........+..+..+-+...+..+-. ..+.+.++++.+.+.-+. .++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 24 ALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVT-------RDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3567788987655555432111122223333433333333322 245677777766553233 599999864
No 254
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.40 E-value=80 Score=23.29 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=4.8
Q ss_pred HHHHHhcCC
Q 029149 60 FSFLKSLGL 68 (198)
Q Consensus 60 ~~~L~~~GI 68 (198)
++.|++.|.
T Consensus 71 ~~~L~~~~~ 79 (122)
T cd02071 71 IELLRELGA 79 (122)
T ss_pred HHHHHhcCC
Confidence 345555655
No 255
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=26.29 E-value=3.1e+02 Score=22.12 Aligned_cols=69 Identities=17% Similarity=0.077 Sum_probs=36.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.|+.-|.+.. ....+.+...+.+...+..+-. ..+.+.++++.+.+..+ --++|||.++
T Consensus 25 a~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 25 ALRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLE-------TYAGAQAAMAAAVEAFGRIDVLINNVGG 94 (260)
T ss_pred HHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCC-------CHHHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 35677889876665444211 1111222333444444444322 24667777777765422 2499999864
No 256
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=26.25 E-value=1.3e+02 Score=27.91 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCCC--------hHHHHHHHHHHHCCCCHHHHHHHHHHhhcccc--C-ccHHHHHHHcCcccccccCCCC
Q 029149 126 NHPLLIHCKRGKH--------RTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKA--R-LSDQRFIELFDISSFKRLPMSF 193 (198)
Q Consensus 126 ~~pVLVHC~aG~~--------RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~--~-~~~~~fIe~~~~~~~~~~~~~~ 193 (198)
..|.+.|+.-=.+ |.|.+....++.+|+.++.+.+-..+.++... . ...++.|+.|+.+.|.+-|.-|
T Consensus 223 ~~P~f~H~pli~~~~g~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~F~l~~~~~~~~~f 301 (445)
T PRK12558 223 KPPVFAHLSLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESFDLSSFSRAPAKF 301 (445)
T ss_pred CCCeEEEcccccCCCcccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHhCCHhhCCCccccC
Confidence 5688888864322 55666666777899999999886666666522 1 3668889999998888766655
No 257
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=26.22 E-value=2.7e+02 Score=20.44 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHhcCCcEEEEcCCCCCC-------CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 029149 61 SFLKSLGLRSVIYLCPEPYP-------DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHC 133 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~-------~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC 133 (198)
+.|.+.|.+.|.-+...... ..+.+++++.|+......+..... ...........++.. .|-.|=|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~-~pdaii~ 74 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDD------SEDAREAQLLWLRRL-RPDAIIC 74 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSS------HHHHHHHHHHHHHTC-SSSEEEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCc------chhHHHHHHHHHhcC-CCcEEEE
Confidence 57889999999999843211 246778889999865544443221 222222222233432 6666667
Q ss_pred CCCCChHHHHHHHHHHHCCC
Q 029149 134 KRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 134 ~aG~~RTG~v~a~yL~~~g~ 153 (198)
.. ++...-+..++...|+
T Consensus 75 ~~--~~~a~~~~~~l~~~g~ 92 (160)
T PF13377_consen 75 SN--DRLALGVLRALRELGI 92 (160)
T ss_dssp SS--HHHHHHHHHHHHHTTS
T ss_pred cC--HHHHHHHHHHHHHcCC
Confidence 44 3444444455555665
No 258
>PRK05650 short chain dehydrogenase; Provisional
Probab=26.14 E-value=2.2e+02 Score=23.32 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
...|.+.|.+.++--+.....+.....++..+-+...+..+-. ..+.+.++++.+.+.. +--++|||.+..
T Consensus 17 a~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 17 ALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVR-------DYSQLTALAQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567778988666555432111111222333444433444321 2456676776665432 235999997643
No 259
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=26.12 E-value=2.4e+02 Score=26.59 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=33.7
Q ss_pred hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEEEEcCCCCChHHHHHHHHHH
Q 029149 87 LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER--NHPLLIHCKRGKHRTGCLVGCLRK 149 (198)
Q Consensus 87 ~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~--~~pVLVHC~aG~~RTG~v~a~yL~ 149 (198)
+.+.|+.. +.+.|... -+.+..+.+.+..+.+.- .-||-+||+.-. |+.+|-++.
T Consensus 164 l~~~Gad~--I~IkDtaG---ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~---GlA~An~la 220 (499)
T PRK12330 164 LLDMGADS--ICIKDMAA---LLKPQPAYDIVKGIKEACGEDTRINLHCHSTT---GVTLVSLMK 220 (499)
T ss_pred HHHcCCCE--EEeCCCcc---CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC---CcHHHHHHH
Confidence 44567654 34444321 134677777787776643 578999998744 555666664
No 260
>PRK05993 short chain dehydrogenase; Provisional
Probab=26.11 E-value=3.4e+02 Score=22.40 Aligned_cols=62 Identities=24% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC--CcEEEEcCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN--HPLLIHCKR 135 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~--~pVLVHC~a 135 (198)
..|.+.|.+-|+--|..+ .. +.+...++.++.+-+.+ .+.+.++++.+.+... =-++|||.+
T Consensus 22 ~~l~~~G~~Vi~~~r~~~---~~-~~l~~~~~~~~~~Dl~d---------~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 22 RALQSDGWRVFATCRKEE---DV-AALEAEGLEAFQLDYAE---------PESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHHCCCEEEEEECCHH---HH-HHHHHCCceEEEccCCC---------HHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 567788987666555432 12 22344566665433322 4667777777655322 258999963
No 261
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=26.10 E-value=44 Score=25.08 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHH
Q 029149 114 IREALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQ 163 (198)
Q Consensus 114 v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~ 163 (198)
..++.+.+.+..++||+|.-.++.++||.-+--.-+...=..+++.++|.
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~ 58 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP 58 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC
Confidence 44455555555578999999999888887665555544445666666654
No 262
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=26.07 E-value=5.3e+02 Score=26.29 Aligned_cols=128 Identities=11% Similarity=0.061 Sum_probs=70.1
Q ss_pred HHHHh-cCCcE-EEEcCCCCCCCchHHHhHh---------CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcE
Q 029149 61 SFLKS-LGLRS-VIYLCPEPYPDSNLEFLKA---------NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPL 129 (198)
Q Consensus 61 ~~L~~-~GIkt-VInLr~e~~~~~~~~~~~~---------~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pV 129 (198)
+.|++ .||.. |||+.+-.+-+...-.+.. ....|+---......+.+..+ +.+...-+.+.+..+.|+
T Consensus 747 e~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~~gG~~Vtv~-D~~~aVae~la~~~p~~~ 825 (891)
T PRK09405 747 EILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKGAEGPVVAAT-DYMKLFAEQIRAFVPGDY 825 (891)
T ss_pred HHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcccCCcEEEec-chHHHHHHHHHHhCCCCE
Confidence 46777 79975 9999986432111111111 122232221222222222221 223323344434335689
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHh--hcccc-CccHHHHHHHcCcccccccC
Q 029149 130 LIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRF--AAAKA-RLSDQRFIELFDISSFKRLP 190 (198)
Q Consensus 130 LVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~--~~~~~-~~~~~~fIe~~~~~~~~~~~ 190 (198)
......|.+|+|.-.. ++...|++.+.|....... ..+.+ .....+-|+.|..+.-+-+|
T Consensus 826 ~~LGvD~FG~SGt~~~-L~~~fglda~~Iv~aal~~La~~g~~~~~~~~~a~~~~~~~~~~~~~ 888 (891)
T PRK09405 826 VVLGTDGFGRSDTREA-LRRFFEVDAEYVVVAALKALADEGEIDASVVAEAIKKYGIDPDKANP 888 (891)
T ss_pred EEEecCCCCCCCCHHH-HHHHhCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999998765 4456899998877644443 22222 23557777888887655554
No 263
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.02 E-value=3.2e+02 Score=21.60 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=34.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
...|.+.|.+-++--|+........+.+...+-+...+..+-. ..+.+.++++.+.+.-+ --++|||.+..
T Consensus 23 ~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 23 AVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVR-------DRAALKAAVAAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3567778986545444422111112222333333332333321 24667777776654322 34899998554
No 264
>PRK05855 short chain dehydrogenase; Validated
Probab=25.99 E-value=2e+02 Score=26.23 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~aG 136 (198)
...|.+.|.+.|+.-|+.+......+.++..|.+...++++-. +.+.+.++++.+.+..+. -++|||.+-
T Consensus 332 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-------~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 332 ALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVS-------DADAMEAFAEWVRAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 3567788998655544432111122223334444444444432 256777788777654332 499999754
No 265
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=25.97 E-value=2.7e+02 Score=23.50 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHHHhcCCcEEEE-cCCCCCCCchHHHhHhCCc--eEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-EEEEcCCC
Q 029149 61 SFLKSLGLRSVIY-LCPEPYPDSNLEFLKANGI--QLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHP-LLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVIn-Lr~e~~~~~~~~~~~~~gI--~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~p-VLVHC~aG 136 (198)
..|.+.|.+.+++ |+... -.+.+...+- .+..+..+-.+ .+.++..++.....-+.| |||.|. |
T Consensus 32 ~~la~~Garv~v~dl~~~~----A~ata~~L~g~~~h~aF~~DVS~-------a~~v~~~l~e~~k~~g~psvlVncA-G 99 (256)
T KOG1200|consen 32 QLLAKKGARVAVADLDSAA----AEATAGDLGGYGDHSAFSCDVSK-------AHDVQNTLEEMEKSLGTPSVLVNCA-G 99 (256)
T ss_pred HHHHhcCcEEEEeecchhh----HHHHHhhcCCCCccceeeeccCc-------HHHHHHHHHHHHHhcCCCcEEEEcC-c
Confidence 4677899998665 54432 2222333333 23223333221 355666677766554544 999994 6
Q ss_pred CChHHHH
Q 029149 137 KHRTGCL 143 (198)
Q Consensus 137 ~~RTG~v 143 (198)
+.|-+++
T Consensus 100 ItrD~~L 106 (256)
T KOG1200|consen 100 ITRDGLL 106 (256)
T ss_pred cccccce
Confidence 7687654
No 266
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=25.96 E-value=1.2e+02 Score=26.38 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=13.6
Q ss_pred EEEEcCCCCChHHHHH
Q 029149 129 LLIHCKRGKHRTGCLV 144 (198)
Q Consensus 129 VLVHC~aG~~RTG~v~ 144 (198)
|-|-|++|++||=.++
T Consensus 248 i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 248 IAIGCTGGQHRSVAIA 263 (288)
T ss_pred EEEecCCCcccHHHHH
Confidence 8999999999985554
No 267
>PRK07024 short chain dehydrogenase; Provisional
Probab=25.89 E-value=1.9e+02 Score=23.44 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=34.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA---NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~---~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVHC~a 135 (198)
...|.+.|.+.++--+..+ ...++.+. .+ +...+.++-. ..+.+.++++.+.+..+. -++|||.+
T Consensus 19 a~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~-~~~~~~~Dl~-------~~~~i~~~~~~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 19 AREYARQGATLGLVARRTD---ALQAFAARLPKAA-RVSVYAADVR-------DADALAAAAADFIAAHGLPDVVIANAG 87 (257)
T ss_pred HHHHHHCCCEEEEEeCCHH---HHHHHHHhcccCC-eeEEEEcCCC-------CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 3567778986555444321 12222222 22 3333333332 246777788777654333 59999976
Q ss_pred C
Q 029149 136 G 136 (198)
Q Consensus 136 G 136 (198)
.
T Consensus 88 ~ 88 (257)
T PRK07024 88 I 88 (257)
T ss_pred c
Confidence 4
No 268
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=25.73 E-value=4.8e+02 Score=23.20 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=44.8
Q ss_pred HHHHHhcCCcEEEEcCCCC-C-CCch---HHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 029149 60 FSFLKSLGLRSVIYLCPEP-Y-PDSN---LEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCK 134 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~-~-~~~~---~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~ 134 (198)
++..++.|++..+++-... . ++.+ .+.+.+.|...+.++=... ...++++.+.++.+.+..+-|+-+||+
T Consensus 118 i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G-----~~~P~~v~~li~~l~~~~~~~l~~H~H 192 (363)
T TIGR02090 118 VEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVG-----VLTPQKMEELIKKLKENVKLPISVHCH 192 (363)
T ss_pred HHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC-----ccCHHHHHHHHHHHhcccCceEEEEec
Confidence 3456788998777764322 1 1122 2334567887655543322 134778888888887654578899998
Q ss_pred CCC
Q 029149 135 RGK 137 (198)
Q Consensus 135 aG~ 137 (198)
.-.
T Consensus 193 nd~ 195 (363)
T TIGR02090 193 NDF 195 (363)
T ss_pred CCC
Confidence 755
No 269
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.57 E-value=3.4e+02 Score=25.42 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEe
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQF 97 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~l 97 (198)
++.|+++||++|.-+-..... ++.+.+.+ .+|+++..
T Consensus 20 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~ 57 (564)
T PRK08155 20 VRLLERQGIRIVTGIPGGAIL-PLYDALSQSTQIRHILA 57 (564)
T ss_pred HHHHHHcCCCEEEeCCCcccH-HHHHHHhccCCceEEEe
Confidence 468999999999999776532 23344433 47888753
No 270
>PRK06181 short chain dehydrogenase; Provisional
Probab=25.56 E-value=2.7e+02 Score=22.52 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 111 EETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
.+.+.++++.+.+.-+ --++|||.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 62 AEACERLIEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4667777777654322 35999997654
No 271
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=25.31 E-value=1.9e+02 Score=24.13 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=32.9
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
.+.+.++..|.+++. ++++ +.+.+.++++.+.+..++|++|+|..-+++
T Consensus 182 ~~~~~~~a~G~~~~~--v~G~-------d~~~l~~al~~a~~~~~~P~~I~~~t~kg~ 230 (255)
T cd02012 182 DLAKKFEAFGWNVIE--VDGH-------DVEEILAALEEAKKSKGKPTLIIAKTIKGK 230 (255)
T ss_pred hHHHHHHHcCCeEEE--ECCC-------CHHHHHHHHHHHHHcCCCCEEEEEEeeccc
Confidence 445666778888753 4432 246677788776654478999999876655
No 272
>PRK08278 short chain dehydrogenase; Provisional
Probab=24.92 E-value=3.5e+02 Score=22.25 Aligned_cols=69 Identities=14% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHHHhcCCcEEEEcCCCCCCC----chH---HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEE
Q 029149 61 SFLKSLGLRSVIYLCPEPYPD----SNL---EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNH-PLLIH 132 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~----~~~---~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~-pVLVH 132 (198)
..|.+.|.+.++--|...... ... +.++..+.+...+..+-. ..+++.++++.+.+.-+. -++||
T Consensus 24 ~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~ 96 (273)
T PRK08278 24 LRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVR-------DEDQVAAAVAKAVERFGGIDICVN 96 (273)
T ss_pred HHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCC-------CHHHHHHHHHHHHHHhCCCCEEEE
Confidence 457788988776655432111 111 222334444444444432 256777777776553233 49999
Q ss_pred cCCC
Q 029149 133 CKRG 136 (198)
Q Consensus 133 C~aG 136 (198)
|.+.
T Consensus 97 ~ag~ 100 (273)
T PRK08278 97 NASA 100 (273)
T ss_pred CCCC
Confidence 9864
No 273
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=24.92 E-value=1.6e+02 Score=21.85 Aligned_cols=71 Identities=23% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHhcCCcEEEEcCCC---CCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPE---PYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDE-RNHPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e---~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~-~~~pVLVHC~aG 136 (198)
..|.+.|-+.|+-+... +......+.++..+.+..-++.+.. +.+.++++++.+.+. .+=-++|||.+.
T Consensus 18 ~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 18 RALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLS-------DPESIRALIEEVIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETT-------SHHHHHHHHHHHHHHHSSESEEEEECSC
T ss_pred HHHHhcCceEEEEeeeccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccc
Confidence 34555666665554433 1111223334556666666665543 367888888888743 233499999877
Q ss_pred CC
Q 029149 137 KH 138 (198)
Q Consensus 137 ~~ 138 (198)
..
T Consensus 91 ~~ 92 (167)
T PF00106_consen 91 FS 92 (167)
T ss_dssp TT
T ss_pred cc
Confidence 63
No 274
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.88 E-value=5.5e+02 Score=24.25 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHhcCCcEEEEcCCCCC-C--C---chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC----CCcE
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-P--D---SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER----NHPL 129 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~--~---~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~----~~pV 129 (198)
+++.+++|...|.--.++.. . + ...+.+.+.|...+.++=.... ..+.++.+.++.+.+.- +-||
T Consensus 215 V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~-----~tP~~v~~lV~~l~~~~~~~~~i~I 289 (503)
T PLN03228 215 IRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGI-----NMPHEFGELVTYVKANTPGIDDIVF 289 (503)
T ss_pred HHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCC-----CCHHHHHHHHHHHHHHhccccCcee
Confidence 34667788864333333221 1 1 1223345678887665543321 24677777887775531 3568
Q ss_pred EEEcCCCCChHHHHHHHHH
Q 029149 130 LIHCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 130 LVHC~aG~~RTG~v~a~yL 148 (198)
-+||+.-. |+.+|-.+
T Consensus 290 ~~H~HND~---GlAvANsl 305 (503)
T PLN03228 290 SVHCHNDL---GLATANTI 305 (503)
T ss_pred EecccCCc---ChHHHHHH
Confidence 89998755 44444433
No 275
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=24.84 E-value=1.5e+02 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=14.4
Q ss_pred cHHHHHhcCCcEEEEcCCC
Q 029149 59 NFSFLKSLGLRSVIYLCPE 77 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e 77 (198)
.++.+.+.|+++|++....
T Consensus 37 ~~~~~~~~Gvttiv~~~~~ 55 (293)
T cd00530 37 ELKRFRAHGGRTIVDATPP 55 (293)
T ss_pred HHHHHHHcCCCeEEEcCCc
Confidence 3456677899999988864
No 276
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=24.83 E-value=1.8e+02 Score=23.81 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCC---CcEEEEcCCCCChHHHHHHHHHHH----CC-----CCHHHHHHHHHHh
Q 029149 114 IREALKVVLDERN---HPLLIHCKRGKHRTGCLVGCLRKL----QK-----WCLSSIFDEYQRF 165 (198)
Q Consensus 114 v~~~l~~i~~~~~---~pVLVHC~aG~~RTG~v~a~yL~~----~g-----~~~~~a~~e~~~~ 165 (198)
..++++.+.+..+ .|+++|...|.|.|=++-|++-.. .+ .+.++...+|...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~ 82 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA 82 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH
Confidence 3345666655433 489999999999999988887642 12 2556665555544
No 277
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.77 E-value=3.4e+02 Score=25.35 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=42.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhC-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKAN-GIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~-gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
++.|+++||++|+-+-..... ++.+.+.+. +|+++...=+.. .....+... ...++|..+-|+.|-+
T Consensus 15 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~rhE~~--------A~~~Adgya---r~tg~~gv~~~t~GpG 82 (557)
T PRK08199 15 VDALRANGVERVFCVPGESYL-AVLDALHDETDIRVIVCRQEGG--------AAMMAEAYG---KLTGRPGICFVTRGPG 82 (557)
T ss_pred HHHHHHcCCCEEEeCCCcchh-HHHHHhhccCCCcEEEeccHHH--------HHHHHHHHH---HhcCCCEEEEeCCCcc
Confidence 468899999999999776432 233444343 588864332211 111111111 2235566666777776
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 83 ~~N~~~gi~~ 92 (557)
T PRK08199 83 ATNASIGVHT 92 (557)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 278
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=24.76 E-value=4.5e+02 Score=24.49 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
++.|+++||++|+-+-..... ++.+.+.+.+|+++...=+.. ......... ...++|..+-|+.|-+=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~v~~~hE~~--------A~~~Adgya---r~sg~~gv~~~t~GpG~ 75 (548)
T PRK08978 8 VHALRAQGVDTVFGYPGGAIM-PVYDALYDGGVEHLLCRHEQG--------AAMAAIGYA---RATGKVGVCIATSGPGA 75 (548)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCeEEEeccHHH--------HHHHHHHHH---HHhCCCEEEEECCCCcH
Confidence 467899999999999876532 244444556888864421110 111222221 22356777777777776
Q ss_pred HHHHHHHHHH
Q 029149 140 TGCLVGCLRK 149 (198)
Q Consensus 140 TG~v~a~yL~ 149 (198)
+-++.+++-.
T Consensus 76 ~n~~~~l~~A 85 (548)
T PRK08978 76 TNLITGLADA 85 (548)
T ss_pred HHHHHHHHHH
Confidence 7666666553
No 279
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.66 E-value=2.5e+02 Score=23.27 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=38.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
-..|.+.|.+-++.-|.+.......+..++.|.. +.++.+-. +.+.+.++++.+.+.- .--+||||.+.
T Consensus 26 A~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~-~~~~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 26 AKQLAAQGAELAFTYQGEALGKRVKPLAESLGSD-FVLPCDVE-------DIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCc-eEEeCCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 3567889998887655432111122222333422 22333322 3577888888876542 33599999753
No 280
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.64 E-value=1.2e+02 Score=27.16 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCChH---HHHHHHHHH
Q 029149 125 RNHPLLIHCKRGKHRT---GCLVGCLRK 149 (198)
Q Consensus 125 ~~~pVLVHC~aG~~RT---G~v~a~yL~ 149 (198)
++..||.||.+|..+| |++.+.++.
T Consensus 147 ~g~~ILThc~sg~lat~~~gTal~~l~~ 174 (339)
T PRK06036 147 DGDTVLTHCNAGRLACVDWGTALGVIRS 174 (339)
T ss_pred CCCEEEEecCCccccccccchHHHHHHH
Confidence 3557999999998765 354444443
No 281
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=24.55 E-value=3.1e+02 Score=24.28 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=43.6
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCc-eEEEeecCCC------C------CCCCCCCHHHHH
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGI-QLFQFGIDGC------K------EPFVNIPEETIR 115 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI-~~~~lpi~~~------~------~p~~~~~~~~v~ 115 (198)
+|.+...+..+++++.+.|+ ++++-+.+.-..+.+.+++.+. .-+++.++.. + ..-..++.+++.
T Consensus 97 ~~~gp~k~~~~l~~a~~~gv--~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~~ 174 (398)
T TIGR03099 97 SFAGPGKTDAELRRALAAGV--LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVP 174 (398)
T ss_pred EEeCCCCCHHHHHHHHhCCC--EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCCCCCcCCCCHHHHH
Confidence 44444446667777777888 4455443211223333444442 2344444421 0 001134456677
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCC
Q 029149 116 EALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
++++.+.+..-.-+-+||+.|-+
T Consensus 175 ~~~~~~~~~~l~l~Glh~h~gs~ 197 (398)
T TIGR03099 175 AALAFIKAADLDFQGFHIFAGSQ 197 (398)
T ss_pred HHHHHHHhCCCeEEEEEeccccc
Confidence 77777655422345567777765
No 282
>PRK09134 short chain dehydrogenase; Provisional
Probab=24.44 E-value=3.2e+02 Score=22.07 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEcCCCC-CCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEP-YPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~-~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++-.+... ......+.+...+-+..-++.+-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 26 a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 26 ALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLA-------DEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 3567788987766555432 111112222223433333343322 24567767766654322 3499999864
No 283
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=24.42 E-value=2.7e+02 Score=24.22 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=42.3
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCc-eEEEeecCCCC-----------C-CCCCCCHHHHH
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGI-QLFQFGIDGCK-----------E-PFVNIPEETIR 115 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI-~~~~lpi~~~~-----------~-p~~~~~~~~v~ 115 (198)
+|.+...+.++++++.++|+ .++++-+...-..+.+.+++.|. .-+.+.+.... . .-..+..+++.
T Consensus 73 v~~gp~~~~~~l~~~~~~~~-~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~ 151 (368)
T cd06810 73 IFTGPAKSVSEIEAALASGV-DHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEAR 151 (368)
T ss_pred EEcCCCCCHHHHHHHHHCCC-CEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHH
Confidence 45555556677888888885 34444443211223333434332 22344443211 0 01134456676
Q ss_pred HHHHHHHhcCCCcEEEEcCCCC
Q 029149 116 EALKVVLDERNHPLLIHCKRGK 137 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG~ 137 (198)
+.++.+.+..-.-+-+||+.|-
T Consensus 152 ~~~~~~~~~~l~l~Gl~~H~gs 173 (368)
T cd06810 152 AALERAKELDLRLVGLHFHVGS 173 (368)
T ss_pred HHHHHHHhCCCcEEEEEEcCCc
Confidence 6776665432233556666664
No 284
>PRK00915 2-isopropylmalate synthase; Validated
Probab=24.30 E-value=6e+02 Score=23.85 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=44.9
Q ss_pred HHHHHhcCCcEEEEcCCCCC--CCc---hHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC----CcEE
Q 029149 60 FSFLKSLGLRSVIYLCPEPY--PDS---NLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN----HPLL 130 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~--~~~---~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~----~pVL 130 (198)
++.++++|.+..++.-.... ++. ..+.+.+.|...+.++=.... ..++++.+.++.+.+.-+ -|+-
T Consensus 126 v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-----~~P~~~~~~i~~l~~~~~~~~~v~l~ 200 (513)
T PRK00915 126 VKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGY-----TTPEEFGELIKTLRERVPNIDKAIIS 200 (513)
T ss_pred HHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC-----CCHHHHHHHHHHHHHhCCCcccceEE
Confidence 45677889987766643221 111 223345678887666543322 246778878887765423 5899
Q ss_pred EEcCCCC
Q 029149 131 IHCKRGK 137 (198)
Q Consensus 131 VHC~aG~ 137 (198)
+||+.-.
T Consensus 201 ~H~HND~ 207 (513)
T PRK00915 201 VHCHNDL 207 (513)
T ss_pred EEecCCC
Confidence 9999866
No 285
>PRK06949 short chain dehydrogenase; Provisional
Probab=24.21 E-value=2.7e+02 Score=22.31 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=33.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++--|..+..+...+..+..+-+..-+..+-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 26 a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 26 AQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVT-------DYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3567778986444444322101111112222223333333321 24667777776654322 2499999874
No 286
>PRK05693 short chain dehydrogenase; Provisional
Probab=24.18 E-value=4e+02 Score=21.77 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~a 135 (198)
...|.+.|.+-++--|... ..+.....++.++..-+.+ .+.+.++++.+.+..+ --++|||.+
T Consensus 18 a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~Dl~~---------~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 18 ADAFKAAGYEVWATARKAE----DVEALAAAGFTAVQLDVND---------GAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred HHHHHHCCCEEEEEeCCHH----HHHHHHHCCCeEEEeeCCC---------HHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3567788986554433321 1122234455554333322 4667777777755423 359999975
No 287
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.12 E-value=3.6e+02 Score=21.19 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.++-.+.... .....+..+..+-++..++.+-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 22 ~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 22 AERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVS-------DAESVERAVDEAKAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 34566779887565554321 11122223334445544554432 24667777777655322 2489999865
No 288
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=24.00 E-value=1.5e+02 Score=23.85 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCC
Q 029149 114 IREALKVVLDERNHPLLIHCKRG 136 (198)
Q Consensus 114 v~~~l~~i~~~~~~pVLVHC~aG 136 (198)
+..+++... ..+.||.+||..+
T Consensus 110 ~~~~~~~a~-e~~~pv~iH~~~~ 131 (251)
T cd01310 110 FRAQLELAK-ELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHH-HhCCCeEEEeeCc
Confidence 444444443 3488999999865
No 289
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=24.00 E-value=4.4e+02 Score=24.71 Aligned_cols=79 Identities=10% Similarity=0.170 Sum_probs=48.6
Q ss_pred eEecCCC--CcccHHHHHhcCCcEEEE------cCC---CC--------CCCchHHHhHhCCceEEEeecCCCCCCCCCC
Q 029149 49 IFRSGFP--DSANFSFLKSLGLRSVIY------LCP---EP--------YPDSNLEFLKANGIQLFQFGIDGCKEPFVNI 109 (198)
Q Consensus 49 Lyrs~~p--~~~~~~~L~~~GIktVIn------Lr~---e~--------~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~ 109 (198)
+|.-|.+ ++.-.+.|+++||+.|=+ +.. .+ .+....+.+++.|++.+ |..+|++
T Consensus 139 Iy~lgeIIHNp~Vv~~L~~~GV~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IV-----DaTCP~V-- 211 (460)
T PLN02821 139 LWITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIV-----DTTCPWV-- 211 (460)
T ss_pred eEEecCCccCHHHHHHHHHCCCEEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----ecCCcch--
Confidence 7777775 466678999999988842 211 11 12344566677787764 5667764
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 029149 110 PEETIREALKVVLDERNHPLLIHCKRGK 137 (198)
Q Consensus 110 ~~~~v~~~l~~i~~~~~~pVLVHC~aG~ 137 (198)
..+...++...+ .++-++||=..+-
T Consensus 212 --~KV~~~v~k~~k-~gy~iII~Gk~~H 236 (460)
T PLN02821 212 --SKVWNTVEKHKK-KDYTSVIHGKYAH 236 (460)
T ss_pred --HHHHHHHHHHHh-CCCEEEEECCCCC
Confidence 345545555443 4788888865543
No 290
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=23.84 E-value=5.2e+02 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCC---CcEEEEcCCCC
Q 029149 112 ETIREALKVVLDERN---HPLLIHCKRGK 137 (198)
Q Consensus 112 ~~v~~~l~~i~~~~~---~pVLVHC~aG~ 137 (198)
+.+.++++.+.+..+ --++=||.+|.
T Consensus 246 ~~i~~al~~v~~~~g~~kv~lvG~cmGGt 274 (532)
T TIGR01838 246 DGVIAALEVVEAITGEKQVNCVGYCIGGT 274 (532)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECcCcH
Confidence 456667777765322 23777999876
No 291
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=23.80 E-value=3.6e+02 Score=25.62 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
+..|+++||++|+-+-..... ++.+.+.+ .+|+++...=+.. .....+... ...++|-.+-|+.|-+
T Consensus 38 ~~~L~~~GV~~vFgipG~~~~-~l~dal~~~~~i~~v~~rhE~~--------A~~~Adgya---r~tg~~gv~~~t~GPG 105 (612)
T PRK07789 38 VRSLEELGVDVVFGIPGGAIL-PVYDPLFDSTKVRHVLVRHEQG--------AGHAAEGYA---QATGRVGVCMATSGPG 105 (612)
T ss_pred HHHHHHCCCCEEEEcCCcchH-HHHHHHhccCCceEEEeccHHH--------HHHHHHHHH---HHhCCCEEEEECCCcc
Confidence 478999999999998876532 23334433 4788876432210 111222222 2235566666777777
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 106 ~~N~l~gl~~ 115 (612)
T PRK07789 106 ATNLVTPIAD 115 (612)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 292
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=23.73 E-value=7.3e+02 Score=25.35 Aligned_cols=134 Identities=11% Similarity=0.043 Sum_probs=76.0
Q ss_pred eEecCCCCcccH---HHHHhc-CCcE-EEEcCCCCCCCchHHHhHhCC---------ceEEEeecCCCCCCCCCCCHHHH
Q 029149 49 IFRSGFPDSANF---SFLKSL-GLRS-VIYLCPEPYPDSNLEFLKANG---------IQLFQFGIDGCKEPFVNIPEETI 114 (198)
Q Consensus 49 Lyrs~~p~~~~~---~~L~~~-GIkt-VInLr~e~~~~~~~~~~~~~g---------I~~~~lpi~~~~~p~~~~~~~~v 114 (198)
|..||....+-+ +.|++. ||.. |||+.+-.+-+...-.+++.+ ..++.=.+.+...|.+..+ +-+
T Consensus 729 LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~-D~~ 807 (889)
T TIGR03186 729 LLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRAAERAQRLGDAERPPSPHVAQALGATQGPVIAAT-DYV 807 (889)
T ss_pred EEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHHHHHhCCcccccccccccHhhhhCCCCCCeeeec-chH
Confidence 555665444332 467764 9965 999998653211111133322 1132222333334443332 344
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHh--hcccc-CccHHHHHHHcCcc
Q 029149 115 REALKVVLDERNHPLLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRF--AAAKA-RLSDQRFIELFDIS 184 (198)
Q Consensus 115 ~~~l~~i~~~~~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~--~~~~~-~~~~~~fIe~~~~~ 184 (198)
+.+.+.+.+..+.|+......|.+|+|.-.. ++...|++.+.|....... ..+.+ .....+-|+.|..+
T Consensus 808 ~avae~i~~~~p~~~~~LG~D~FG~Sgtr~~-Lr~~fglda~~Iv~aal~~L~~~g~~~~~~~~~a~~~~~~~ 879 (889)
T TIGR03186 808 RAVPELIRAYVPRRYVTLGTDGFGRSDTRAA-LRAFFEVDRASIVIAALQALADDGLVARDVVRQAIARYGKA 879 (889)
T ss_pred HHHHHHHHhhCCCCEEEeccCCCCCcCCHHH-HHHHhCCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHcCCC
Confidence 4455555554467999999999999998644 4445788888876544443 22222 23567778888877
No 293
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=23.72 E-value=3.1e+02 Score=21.63 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=34.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHH---hHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEF---LKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKR 135 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~---~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~a 135 (198)
...|.+.|.+.|+..++.. ....+. ....+.+..-+..+-. ..+.+.++++.+.+..+ --++|||.+
T Consensus 17 a~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag 87 (242)
T TIGR01829 17 CQRLAKDGYRVAANCGPNE--ERAEAWLQEQGALGFDFRVVEGDVS-------SFESCKAAVAKVEAELGPIDVLVNNAG 87 (242)
T ss_pred HHHHHHCCCEEEEEeCCCH--HHHHHHHHHHHhhCCceEEEEecCC-------CHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 4567788998777666322 111111 1222323222333321 24567777776655322 348999975
Q ss_pred C
Q 029149 136 G 136 (198)
Q Consensus 136 G 136 (198)
.
T Consensus 88 ~ 88 (242)
T TIGR01829 88 I 88 (242)
T ss_pred C
Confidence 4
No 294
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=23.69 E-value=3e+02 Score=21.91 Aligned_cols=71 Identities=18% Similarity=0.066 Sum_probs=37.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYP-DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDE-RNHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~-~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~-~~~pVLVHC~aG~ 137 (198)
.++|.+.|.+.|+-.+..... ....+..+..+.+...+..+-. ..+.+.++++.+.+. .+--++|||.+..
T Consensus 20 a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 20 CQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVG-------DWDSTKAAFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred HHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 457788898766644322110 0111222334555444444432 246677777766553 2345999997543
No 295
>PRK07064 hypothetical protein; Provisional
Probab=23.66 E-value=4.3e+02 Score=24.51 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=40.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
++.|+++||++|.-+-..... ++.+.+.+ .+|+++...=+.. ...+..... ...++|-.+-|+.|-+
T Consensus 10 ~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~~i~~i~~~hE~~--------A~~~A~gya---r~tg~~~v~~~t~GpG 77 (544)
T PRK07064 10 AAFLEQCGVKTAFGVISIHNM-PILDAIGRRGKIRFVPARGEAG--------AVNMADAHA---RVSGGLGVALTSTGTG 77 (544)
T ss_pred HHHHHHcCCCEEEeCCCCcch-HHHHHHhccCCccEEeeccHHH--------HHHHHHHHH---HhcCCCeEEEeCCCCc
Confidence 468999999999988765322 24444433 4788864322110 111111221 1234555555666666
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 78 ~~N~~~~i~~ 87 (544)
T PRK07064 78 AGNAAGALVE 87 (544)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 296
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.61 E-value=1e+02 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=16.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceE
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQL 94 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~ 94 (198)
++.|++.|...|.-+.....+....+.+++.|+.-
T Consensus 74 ~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 74 RKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAE 108 (132)
T ss_pred HHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCE
Confidence 34566666543333333222223334456677743
No 297
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=23.50 E-value=2.6e+02 Score=23.31 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=27.7
Q ss_pred hHHHhHhCCceEEEe-ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 83 NLEFLKANGIQLFQF-GIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 83 ~~~~~~~~gI~~~~l-pi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
+.+.++..|+.++.. .+. ..+++.++++..++..++|.+|++..
T Consensus 158 ~~~iA~a~G~~~~~~~~v~---------~~~~l~~al~~al~~~~GP~lI~v~i 202 (237)
T cd02018 158 LVLIAATHGCVYVARLSPA---------LKKHFLKVVKEAISRTDGPTFIHAYT 202 (237)
T ss_pred HHHHHHHCCCCEEEEEccC---------CHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 445566667666542 222 24678888888875247898888753
No 298
>PRK07413 hypothetical protein; Validated
Probab=23.49 E-value=1e+02 Score=28.00 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~~g~ 153 (198)
++-|.|||..||+.|-.+.+..++..|.
T Consensus 200 ~g~i~VYTG~GKGKTTAAlGlAlRA~G~ 227 (382)
T PRK07413 200 SGGIEIYTGEGKGKSTSALGKALQAIGR 227 (382)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHhcC
Confidence 4569999999999999988888876433
No 299
>PRK06483 dihydromonapterin reductase; Provisional
Probab=23.33 E-value=3.8e+02 Score=21.23 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
..|.+.|.+.|+.-|... ...+..+..++.++ +.+-. +.+.+.++++.+.+.-+ --++|||.+.
T Consensus 20 ~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~--~~D~~-------~~~~~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 20 WHLLAQGQPVIVSYRTHY---PAIDGLRQAGAQCI--QADFS-------TNAGIMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHHHHCCCeEEEEeCCch---hHHHHHHHcCCEEE--EcCCC-------CHHHHHHHHHHHHhhCCCccEEEECCcc
Confidence 467788987766544432 12233344565443 33321 24667777777655322 3599999864
No 300
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=23.16 E-value=1.8e+02 Score=23.36 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=36.6
Q ss_pred ccc-eEecCCCC---------cccHHHHHhcCCcE-EEEcCCCCCCCchHHHhHhCCceEEEeecCC
Q 029149 46 DNG-IFRSGFPD---------SANFSFLKSLGLRS-VIYLCPEPYPDSNLEFLKANGIQLFQFGIDG 101 (198)
Q Consensus 46 ~~~-Lyrs~~p~---------~~~~~~L~~~GIkt-VInLr~e~~~~~~~~~~~~~gI~~~~lpi~~ 101 (198)
+++ ||-+.+=. ...+..|.+.||++ ||.=|... ....-+++.||++++..+.+
T Consensus 20 TDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~s~---ive~Ra~~LGI~~~~qG~~d 83 (170)
T COG1778 20 TDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRDSP---IVEKRAKDLGIKHLYQGISD 83 (170)
T ss_pred ecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCCCH---HHHHHHHHcCCceeeechHh
Confidence 455 66666532 23578999999987 66666543 35556788999999887765
No 301
>PRK07806 short chain dehydrogenase; Provisional
Probab=22.84 E-value=3.5e+02 Score=21.50 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=37.0
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPY-PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~-~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
..+|.+.|.+-++..|.... .....+..+..+.+...+..+-. ..+.+.++++.+.+.-+ -.++|||.++.
T Consensus 23 ~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 23 AKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLT-------DEESVAALMDTAREEFGGLDALVLNASGG 95 (248)
T ss_pred HHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 45677889876665554321 11112222333444443444322 25667777776654322 34899998653
No 302
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.84 E-value=3.7e+02 Score=25.23 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
++.|+++||++|+-+-..... ++.+.+.+ .+|+++...=+.. ...+.+... ...++|..+-|++|-+
T Consensus 11 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~~hE~~--------A~~mAdgya---r~tg~~gv~~~t~GpG 78 (574)
T PRK06882 11 VQSLRDEGVEYVFGYPGGSVL-DIYDAIHTLGGIEHVLVRHEQA--------AVHMADGYA---RSTGKVGCVLVTSGPG 78 (574)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHhhcCCCeEEEeccHHH--------HHHHHHHHH---HhhCCCeEEEECCCcc
Confidence 468999999999998766432 23334444 4788865422110 111111211 1234565566666666
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 79 ~~N~l~~i~~ 88 (574)
T PRK06882 79 ATNAITGIAT 88 (574)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 303
>PRK12828 short chain dehydrogenase; Provisional
Probab=22.79 E-value=3.4e+02 Score=21.24 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=35.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
...|.+.|.+.++--|.........+.....+.+++...+.+ .+++.++++.+.+.-+ --++|||.+..
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~---------~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 24 AAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVD---------PQAARRAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred HHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCC---------HHHHHHHHHHHHHHhCCcCEEEECCccc
Confidence 356677798755444433211111111233455554433322 4567777776655322 34889997654
No 304
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.75 E-value=3.9e+02 Score=25.02 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=25.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHh-HhCCceEEEee
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFL-KANGIQLFQFG 98 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~-~~~gI~~~~lp 98 (198)
+..|+++||++|+-+-..... ++.+.+ +..+|+++...
T Consensus 10 ~~~L~~~Gv~~vFgipG~~~~-~l~~~l~~~~~i~~v~~r 48 (563)
T PRK08527 10 CEALKEEGVKVVFGYPGGAIL-NIYDEIYKQNYFKHILTR 48 (563)
T ss_pred HHHHHHcCCCEEEECCCcchH-HHHHHHhccCCCeEEEec
Confidence 467999999999998776432 233333 33478886543
No 305
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=22.59 E-value=3.7e+02 Score=20.98 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=41.7
Q ss_pred eEecCCCCcccHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCc-eEEEeecCCC--CCCCCCCCHHHHHHHHHHHHhcC
Q 029149 49 IFRSGFPDSANFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGI-QLFQFGIDGC--KEPFVNIPEETIREALKVVLDER 125 (198)
Q Consensus 49 Lyrs~~p~~~~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI-~~~~lpi~~~--~~p~~~~~~~~v~~~l~~i~~~~ 125 (198)
+|.+...++.+++.+.+.|..+ +++-+...-..+.+.+++.|. --+++.++.. ... ..+..+++.++++.+.+..
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~-~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~~~~R-~G~~~~e~~~~~~~i~~~~ 140 (211)
T cd06808 63 LFLGPCKQVSELEDAAEQGVIV-VTVDSLEELEKLEEAALKAGPPARVLLRIDTGDENGK-FGVRPEELKALLERAKELP 140 (211)
T ss_pred EEcCCCCCHHHHHHHHHcCCCE-EEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhCC
Confidence 4555555677788777775433 344332211123333444343 2355666543 111 1234566777777765432
Q ss_pred C-CcEEEEcCCCC
Q 029149 126 N-HPLLIHCKRGK 137 (198)
Q Consensus 126 ~-~pVLVHC~aG~ 137 (198)
+ .-.-+|++.|.
T Consensus 141 ~l~l~Gl~~H~~~ 153 (211)
T cd06808 141 HLRLVGLHTHFGS 153 (211)
T ss_pred CCcEEEEEEecCC
Confidence 2 23445555544
No 306
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=22.57 E-value=1e+02 Score=26.42 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCcE--EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhh
Q 029149 117 ALKVVLDERNHPL--LIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFA 166 (198)
Q Consensus 117 ~l~~i~~~~~~pV--LVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~ 166 (198)
+|+.|.+..+.|+ +++..+|. =||.++|+++...|++.+++.+-|....
T Consensus 26 vL~~Le~~~~~~i~~~fDli~GT-StGgiiA~~la~~~~~~~e~~~~y~~~~ 76 (308)
T cd07211 26 ILRKIEKLTGKPIHELFDYICGV-STGAILAFLLGLKKMSLDECEELYRKLG 76 (308)
T ss_pred HHHHHHHHhCCCchhhcCEEEec-ChhHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4444443334554 46778887 6788888888778899999988876543
No 307
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=22.49 E-value=57 Score=28.82 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCChHHHH
Q 029149 114 IREALKVVLDERNHPLLIHCKRGKHRTGCL 143 (198)
Q Consensus 114 v~~~l~~i~~~~~~pVLVHC~aG~~RTG~v 143 (198)
+.++++.+. .-||-+||..|-|-+|+.
T Consensus 23 ve~AL~~L~---~~piSmHCWQGDDv~GFe 49 (419)
T COG4806 23 VEEALRQLD---RLPVSMHCWQGDDVSGFE 49 (419)
T ss_pred HHHHHHHHh---cCceeeeeecCCcccccc
Confidence 335565553 569999999999887753
No 308
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=22.34 E-value=6.7e+02 Score=23.68 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=46.9
Q ss_pred HHHHHhcCCcEEEEcCC--CCC---CCchH---HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEE
Q 029149 60 FSFLKSLGLRSVIYLCP--EPY---PDSNL---EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLI 131 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~--e~~---~~~~~---~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLV 131 (198)
++..+++|.+..++.-. +.. ++... +.+.+.|...+.+|=.... ..+.++.+.++.+.+.-+-|+-+
T Consensus 132 v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~-----~~P~~v~~li~~l~~~~~v~i~~ 206 (524)
T PRK12344 132 VAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGG-----TLPHEVAEIVAEVRAAPGVPLGI 206 (524)
T ss_pred HHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCC-----cCHHHHHHHHHHHHHhcCCeEEE
Confidence 34667889876664320 111 11122 3345678887765533221 24677887888776654679999
Q ss_pred EcCCCCChHHHHHHHHH
Q 029149 132 HCKRGKHRTGCLVGCLR 148 (198)
Q Consensus 132 HC~aG~~RTG~v~a~yL 148 (198)
||+.-. |+.+|-.+
T Consensus 207 H~HND~---GlA~ANsl 220 (524)
T PRK12344 207 HAHNDS---GCAVANSL 220 (524)
T ss_pred EECCCC---ChHHHHHH
Confidence 999866 44444444
No 309
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=22.34 E-value=1e+02 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHCCCCH
Q 029149 126 NHPLLIHCKRGKHRTGCLVGCLRKLQKWCL 155 (198)
Q Consensus 126 ~~pVLVHC~aG~~RTG~v~a~yL~~~g~~~ 155 (198)
.+-|.|+|..||+-|-..+++.++..|+-.
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~ 32 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGM 32 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT-
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCC
Confidence 567999999999999988888887644433
No 310
>PRK08617 acetolactate synthase; Reviewed
Probab=22.08 E-value=4.5e+02 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=26.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEee
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFG 98 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lp 98 (198)
++.|+++||++|+-+-..... ++.+.+.+.+|+++...
T Consensus 12 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~i~~i~~~ 49 (552)
T PRK08617 12 VDSLINQGVKYVFGIPGAKID-RVFDALEDSGPELIVTR 49 (552)
T ss_pred HHHHHHcCCCEEEeCCCccHH-HHHHHHhhCCCCEEEec
Confidence 467999999999999877532 23444455688886543
No 311
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.05 E-value=84 Score=27.29 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHHhcCCcEEEEcCCCC-CC--------CchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHH----HHHHhcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEP-YP--------DSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREAL----KVVLDERNH 127 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~-~~--------~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l----~~i~~~~~~ 127 (198)
...+++|-++.|...-.. .. +..++.|++.|++|+.+-.+|... .......++|+ -.-+++=++
T Consensus 124 ~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~s---d~gv~gaqqfIlE~vp~~i~kYGk 200 (275)
T PF12683_consen 124 WAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTS---DVGVAGAQQFILEDVPKWIKKYGK 200 (275)
T ss_dssp HHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SS---TCHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCC---CCCcHHHHHHHHHHHHHHHHHhCC
Confidence 355789999999885433 11 235678999999999996665321 11122222222 111222367
Q ss_pred cEEEEcCCCCCh
Q 029149 128 PLLIHCKRGKHR 139 (198)
Q Consensus 128 pVLVHC~aG~~R 139 (198)
-+.+.|+..-..
T Consensus 201 dtaff~TN~a~~ 212 (275)
T PF12683_consen 201 DTAFFCTNDAMT 212 (275)
T ss_dssp --EEEESSHHHH
T ss_pred ceeEEecCcccc
Confidence 799999987633
No 312
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=21.88 E-value=5.2e+02 Score=24.14 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhH-hCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLK-ANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~-~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
+..|+++||++|+-+-.+... .+.+.+. ..+|+++...=+.. .....+.. ....++|..+-|+.|-+
T Consensus 8 ~~~L~~~Gv~~vFgvpG~~~~-~l~~~l~~~~~i~~i~~~hE~~--------A~~~Adgy---ar~tg~~gv~~~t~GpG 75 (558)
T TIGR00118 8 IESLKDEGVKTVFGYPGGAIL-PIYDALYNDSGIEHILVRHEQG--------AAHAADGY---ARASGKVGVVLVTSGPG 75 (558)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHhhccCCceEEEeCcHHH--------HHHHHHHH---HHHhCCCEEEEECCCCc
Confidence 467999999999998776432 2333343 46788865432210 11111111 11235566666666666
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 76 ~~n~l~~i~~ 85 (558)
T TIGR00118 76 ATNLVTGIAT 85 (558)
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 313
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=21.88 E-value=3.6e+02 Score=21.42 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 029149 111 EETIREALKVVLDERN-HPLLIHCKRGK 137 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~-~pVLVHC~aG~ 137 (198)
.+.+.++++.+.+..+ --++|||.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 64 RDSVDTAVAAAEQALGPVDVLVNNAGWD 91 (250)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5667777776655322 35899999743
No 314
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=21.86 E-value=3.6e+02 Score=21.37 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=39.0
Q ss_pred cHHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHh--cCCCcEEEEcCCC
Q 029149 59 NFSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLD--ERNHPLLIHCKRG 136 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~--~~~~pVLVHC~aG 136 (198)
+...|++.| ..|+-|.+ .........++. ++.. -+++ .+++. .+..... ...-+|++..-.|
T Consensus 57 Ea~~lr~~g-~~il~l~~-~~~~~~~~~~~~-~~~~---~v~s---------~~~~~-~l~~~~~~~~~~~~v~l~vdtG 120 (218)
T PF01168_consen 57 EAEELREAG-APILVLGP-IPPEELEELVEY-NIIP---TVDS---------LEQLE-ALSKAAKKQGKPLKVHLKVDTG 120 (218)
T ss_dssp HHHHHHHTT-SEEEEESE-STGGGHHHHHHT-TEEE---EE-S---------HHHHH-HHHHHHHHHTSTEEEEEEBESS
T ss_pred HhhhHHhcC-CceEEEcC-CChhhHHHHhhC-cEEE---EEch---------hhHHH-HHHHHHHHcCCceEEEEeeccc
Confidence 445778888 88888877 222234444432 3333 2332 35554 4444443 3456799999999
Q ss_pred CChHH
Q 029149 137 KHRTG 141 (198)
Q Consensus 137 ~~RTG 141 (198)
.+|+|
T Consensus 121 ~~R~G 125 (218)
T PF01168_consen 121 MGRLG 125 (218)
T ss_dssp SSSSS
T ss_pred ccccC
Confidence 99974
No 315
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.82 E-value=1.5e+02 Score=28.17 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHhhcccc---CccHHHHHHHcCcccccccCCCC
Q 029149 139 RTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKA---RLSDQRFIELFDISSFKRLPMSF 193 (198)
Q Consensus 139 RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~~~---~~~~~~fIe~~~~~~~~~~~~~~ 193 (198)
|.|......++.+|+.++.+++-..+.++... ....++.|+.|+.+.|.+-|.-|
T Consensus 244 R~g~~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~F~~~~v~~s~~~F 301 (513)
T PRK14895 244 RHGALGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDWFNLDSLGKSPSKL 301 (513)
T ss_pred ccCchhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhhCCHHhCcCCcCcC
Confidence 56666666677789999888886665555421 24678889999988887766655
No 316
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.76 E-value=3.2e+02 Score=22.66 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=37.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
-..|.+.|.+.++.-|.+...+...+..++.+- ...++.+-. +.+.+.++++.+.+.-+ --++|||.+.
T Consensus 29 a~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 29 AKACRAAGAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVT-------DEASIDAVFETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCC-------CHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 456778999877765543211122233333332 122333321 35778888888765422 3599999754
No 317
>PRK08322 acetolactate synthase; Reviewed
Probab=21.74 E-value=4.9e+02 Score=24.13 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKHR 139 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~R 139 (198)
++.|+++||++|+-+-..... ++.+.+.+.+|+++...=+.. ...+.+... ...++|..+-|+.|-+=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~dal~~~~i~~i~~~hE~~--------A~~~A~gya---r~tg~~gv~~~t~GpG~ 75 (547)
T PRK08322 8 VKCLENEGVEYIFGIPGEENL-DLLEALRDSSIKLILTRHEQG--------AAFMAATYG---RLTGKAGVCLSTLGPGA 75 (547)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEeccHHH--------HHHHHHHHH---HhhCCCEEEEECCCccH
Confidence 467999999999998776532 244445567788864332210 111111211 22355666666666666
Q ss_pred HHHHHHHHH
Q 029149 140 TGCLVGCLR 148 (198)
Q Consensus 140 TG~v~a~yL 148 (198)
+-++.++.-
T Consensus 76 ~N~~~~i~~ 84 (547)
T PRK08322 76 TNLVTGVAY 84 (547)
T ss_pred hHHHHHHHH
Confidence 665555544
No 318
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.73 E-value=4.8e+02 Score=21.84 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHhcCCcEEEEcCCCCC-C-CchH---HHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC---CcEEEE
Q 029149 61 SFLKSLGLRSVIYLCPEPY-P-DSNL---EFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN---HPLLIH 132 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~-~-~~~~---~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~---~pVLVH 132 (198)
+..+++|++..++.-.... + +.+. +.+.+.|+..+. +.|... ...++++.+.++.+.+.-+ -|+-+|
T Consensus 121 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~--l~DT~G---~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 121 EYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTIN--IPDTVG---YLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred HHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEE--ECCCCC---CCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 4556789886666543321 1 1122 334556776644 444321 1357788888888866433 588899
Q ss_pred cCCCC
Q 029149 133 CKRGK 137 (198)
Q Consensus 133 C~aG~ 137 (198)
|+...
T Consensus 196 ~Hn~~ 200 (268)
T cd07940 196 CHNDL 200 (268)
T ss_pred ecCCc
Confidence 98766
No 319
>PLN02449 ferrochelatase
Probab=21.69 E-value=3.9e+02 Score=25.15 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=32.1
Q ss_pred ccHHHHHhcCCcEEEEcCCC----C------CCCchHHHhHhCCc-eEEEeecCCC
Q 029149 58 ANFSFLKSLGLRSVIYLCPE----P------YPDSNLEFLKANGI-QLFQFGIDGC 102 (198)
Q Consensus 58 ~~~~~L~~~GIktVInLr~e----~------~~~~~~~~~~~~gI-~~~~lpi~~~ 102 (198)
+.++.|.+.|+|.|+=.... . ..-..++.+++.|+ .|..+|.-+.
T Consensus 342 d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~ 397 (485)
T PLN02449 342 ETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGC 397 (485)
T ss_pred HHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCC
Confidence 35678889999998776643 1 11245677888999 5888998765
No 320
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=21.64 E-value=3.4e+02 Score=26.25 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=47.1
Q ss_pred eEecCCC--CcccHHHHHhcCCcEEEEcCCC-----------CCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHH
Q 029149 49 IFRSGFP--DSANFSFLKSLGLRSVIYLCPE-----------PYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIR 115 (198)
Q Consensus 49 Lyrs~~p--~~~~~~~L~~~GIktVInLr~e-----------~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~ 115 (198)
+|.=|.+ ++.-++.|+++|+++|=++..- ..++...+.+++.|+..+ |.++|++ ..+.
T Consensus 33 i~~lg~ivHN~~vv~~l~~~Gv~~v~~~~~~~~~~~vii~aHG~~~~~~~~~~~~~~~vi-----DaTCP~V----~k~~ 103 (647)
T PRK00087 33 IYTLGPLIHNNQVVEKLKKKGIKPIEDIDELNEGDTIIIRSHGVPPEVLEELKDKGLKVI-----DATCPFV----KNIQ 103 (647)
T ss_pred EEEeCCCcCCHHHHHHHHHCCCEEeCCHhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE-----ECCCcCc----hHHH
Confidence 6666664 4666789999999988554421 123455666778888875 5566754 2344
Q ss_pred HHHHHHHhcCCCcEEEEcCCC
Q 029149 116 EALKVVLDERNHPLLIHCKRG 136 (198)
Q Consensus 116 ~~l~~i~~~~~~pVLVHC~aG 136 (198)
+.++.+.+ .++.|+++=..|
T Consensus 104 ~~~~~~~~-~g~~ivi~G~~~ 123 (647)
T PRK00087 104 KLAKKYYE-EGYQIVIVGDKN 123 (647)
T ss_pred HHHHHHHh-CCCEEEEEeCCC
Confidence 44444443 366666654443
No 321
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=21.60 E-value=74 Score=26.27 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=36.6
Q ss_pred ccCCccccccccccCCCCCCCCCCCCCCCCCcce-------ecCCCccccccceEecC
Q 029149 3 VNGCDGEIRTVREKSPAPINGTGENGSRDGEELF-------VPPFNFAIVDNGIFRSG 53 (198)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~~nf~~V~~~Lyrs~ 53 (198)
.+||-+|--++-+-+++|=|-|-+..+.+..... .+..+|..++++++.+.
T Consensus 17 l~GCs~~~a~~~sv~~a~~~tt~~v~~td~~~~a~~midSm~~~p~~~~ik~~i~v~~ 74 (200)
T COG3417 17 LSGCSSEPAPKESVKDAPENTTEPVDPTDLELIAQGMIDSMPSDPNFEHIKPNIAVEP 74 (200)
T ss_pred HhhcccCCCcchhcCcCcccccCCCCccchhhcchhhhhcccCCcchhhcCCCcceee
Confidence 5799999999999999999999888886655544 22345566666644433
No 322
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=21.51 E-value=3.3e+02 Score=20.37 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=27.9
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCK 134 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~ 134 (198)
++...++..|+++.++ .+ .+++.++++...+ .++|.+|+|.
T Consensus 127 d~~~~a~~~G~~~~~v--~~---------~~~l~~a~~~a~~-~~~p~~i~v~ 167 (168)
T cd00568 127 DFAALAEAYGAKGVRV--ED---------PEDLEAALAEALA-AGGPALIEVK 167 (168)
T ss_pred CHHHHHHHCCCeEEEE--CC---------HHHHHHHHHHHHh-CCCCEEEEEE
Confidence 4556667778877643 21 4667778877764 4889999884
No 323
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=21.41 E-value=1.5e+02 Score=26.28 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=31.3
Q ss_pred cHHHHHhcCCcEEEEcCCCC----------CCCchHHHhHhCC-ceEEEeecCCC
Q 029149 59 NFSFLKSLGLRSVIYLCPEP----------YPDSNLEFLKANG-IQLFQFGIDGC 102 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~e~----------~~~~~~~~~~~~g-I~~~~lpi~~~ 102 (198)
.++.|.+.|+|.||-....= .....++.+++.| .+|.++|+...
T Consensus 248 ~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~ 302 (320)
T COG0276 248 LLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLND 302 (320)
T ss_pred HHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCC
Confidence 46778888999988776531 1123566677777 89999999875
No 324
>PLN02608 L-ascorbate peroxidase
Probab=21.40 E-value=54 Score=28.65 Aligned_cols=16 Identities=44% Similarity=0.574 Sum_probs=12.1
Q ss_pred cccCCccccccccccC
Q 029149 2 KVNGCDGEIRTVREKS 17 (198)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (198)
+++||||.|+---|+.
T Consensus 50 ~~gGcDgSIll~~E~~ 65 (289)
T PLN02608 50 KTGGPNGSIRNEEEYS 65 (289)
T ss_pred CCCCCCeeeecccccC
Confidence 5899999998644544
No 325
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=21.40 E-value=82 Score=27.18 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=30.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHHhhcc
Q 029149 130 LIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAA 168 (198)
Q Consensus 130 LVHC~aG~~RTG~v~a~yL~~~g~~~~~a~~e~~~~~~~ 168 (198)
+++..+|. =||.++|+.|...+++.+++.+.|...+..
T Consensus 42 ~fDli~GT-StGgiiA~~l~~~~~t~~e~~~~y~~~~~~ 79 (309)
T cd07216 42 YFDLIGGT-STGGLIAIMLGRLRMTVDECIDAYTRLAKK 79 (309)
T ss_pred hcCeeeec-cHHHHHHHHhcccCCCHHHHHHHHHHHhHH
Confidence 47888888 678888887777899999999888875443
No 326
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=21.37 E-value=3.6e+02 Score=21.39 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
..+|.+.|.+-++--|.........+..+..+.+...+..+-. ..+.+.++++.+.+.. +--++|||.+.
T Consensus 18 ~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 18 ALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVT-------KEDEIADMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4567778986555444432111111112222333322333321 2456777776665432 23488999865
No 327
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.35 E-value=3.6e+02 Score=21.66 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=36.1
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 61 SFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
..|.+.|.+-|+--|..+......+.+++.+-+...++.+-. ..+++.++++.+.+.-+ --++|||.+.
T Consensus 29 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 29 RALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIA-------DEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 456778987666555432111122223334433333333322 24667777777755322 2489999764
No 328
>PRK12753 transketolase; Reviewed
Probab=21.14 E-value=1.8e+02 Score=28.31 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=31.9
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
...+.++..|.+++. +++++ +.+.+.++++...+..++|++|||..=++
T Consensus 200 ~~~~~f~a~Gw~~~~-~vDGh-------D~~~i~~a~~~a~~~~~~P~~I~~~T~kG 248 (663)
T PRK12753 200 DTAKRFEAYHWHVIH-EIDGH-------DPQAIKEAILEAQSVKDKPSLIICRTIIG 248 (663)
T ss_pred hHHHHHHHcCCeEEc-eeCCC-------CHHHHHHHHHHHHHCCCCeEEEEEEEeec
Confidence 344556778888863 23544 24677778876655457899999875443
No 329
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.12 E-value=2.8e+02 Score=22.29 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=34.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG~ 137 (198)
..+|.+.|.+.++--|+.. ...+..+. .+.+..-+..+-. ..+.+.++++.+.+.. +--++|||.+..
T Consensus 28 a~~L~~~g~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 28 AEAFAEAGARVHVCDVSEA---ALAATAARLPGAKVTATVADVA-------DPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHCCCEEEEEeCCHH---HHHHHHHHHhcCceEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4567788987544444332 12222111 1222222333321 2456777777665432 335999998765
No 330
>PLN02439 arginine decarboxylase
Probab=21.02 E-value=5.2e+02 Score=24.73 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=41.6
Q ss_pred hcCCcEEEEcCCCCCCCchHHHhHhCCce-EEEeec----CCCC--------CCCCCCCHHHHHHHHHHHHhcCCC--cE
Q 029149 65 SLGLRSVIYLCPEPYPDSNLEFLKANGIQ-LFQFGI----DGCK--------EPFVNIPEETIREALKVVLDERNH--PL 129 (198)
Q Consensus 65 ~~GIktVInLr~e~~~~~~~~~~~~~gI~-~~~lpi----~~~~--------~p~~~~~~~~v~~~l~~i~~~~~~--pV 129 (198)
++|++.+|++-+...-..+.+.+++.|+. -+-+.+ .+.. .....++.+++.++++.+.+.... =+
T Consensus 105 ~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~~~ei~~~i~~lk~~~~l~~L~ 184 (559)
T PLN02439 105 KLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTATEIVRVVRKLRKEGMLDCLQ 184 (559)
T ss_pred hCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHhCCCCCceE
Confidence 67899888886543222344445555542 222222 1110 111245667788788877654333 48
Q ss_pred EEEcCCCCC
Q 029149 130 LIHCKRGKH 138 (198)
Q Consensus 130 LVHC~aG~~ 138 (198)
++||+-|..
T Consensus 185 GLHfHiGSQ 193 (559)
T PLN02439 185 LLHFHIGSQ 193 (559)
T ss_pred EEEEeCCCC
Confidence 999999976
No 331
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.88 E-value=5.2e+02 Score=21.88 Aligned_cols=86 Identities=14% Similarity=-0.014 Sum_probs=45.5
Q ss_pred HHHHhcCCcEEEEcCCCCC-------CCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 029149 61 SFLKSLGLRSVIYLCPEPY-------PDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHC 133 (198)
Q Consensus 61 ~~L~~~GIktVInLr~e~~-------~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC 133 (198)
+.|.++|.+.|.-+..... ...+.++++++|+.+...-+.... .+.+.-.+.++.+++..+.|-.|-|
T Consensus 169 ~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ai~~ 243 (346)
T PRK10401 169 RMLLNNGHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGT-----PDMQGGEAAMVELLGRNLQLTAVFA 243 (346)
T ss_pred HHHHHCCCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCC-----CChHHHHHHHHHHHcCCCCCcEEEE
Confidence 5677889999887754321 124566777888754321111111 1123333455556654456778888
Q ss_pred CCCCChHHHHHHHHHHHCCC
Q 029149 134 KRGKHRTGCLVGCLRKLQKW 153 (198)
Q Consensus 134 ~aG~~RTG~v~a~yL~~~g~ 153 (198)
... ..+.-+.-++..+|+
T Consensus 244 ~nd--~~A~g~~~al~~~G~ 261 (346)
T PRK10401 244 YND--NMAAGALTALKDNGI 261 (346)
T ss_pred CCc--HHHHHHHHHHHHcCC
Confidence 754 444333334433444
No 332
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=20.72 E-value=57 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCCCChHHHHHHHHHHH--CCCCHHHH
Q 029149 134 KRGKHRTGCLVGCLRKL--QKWCLSSI 158 (198)
Q Consensus 134 ~aG~~RTG~v~a~yL~~--~g~~~~~a 158 (198)
-.|+||+|.+++.-..+ +|....++
T Consensus 8 V~GkDr~GIva~is~vLAe~~vNIldi 34 (90)
T COG3830 8 VIGKDRVGIVAAVSRVLAEHGVNILDI 34 (90)
T ss_pred EEcCCCCchhHHHHHHHHHcCCcEEEH
Confidence 36999999999888764 66654333
No 333
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.71 E-value=3.8e+02 Score=22.02 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDER-NHPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~-~~pVLVHC~aG 136 (198)
...|.+.|.+.++-.|.........+.....+.+...+..+-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 27 a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 27 AIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVT-------DPDSVKSFVAQAEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 4567788987655444322111111112233434333344322 2466777777665422 23599999864
No 334
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=20.43 E-value=1.6e+02 Score=20.26 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=12.9
Q ss_pred HHCCCCHHHHHHHHHHhh
Q 029149 149 KLQKWCLSSIFDEYQRFA 166 (198)
Q Consensus 149 ~~~g~~~~~a~~e~~~~~ 166 (198)
..+|+++++++++..+.+
T Consensus 66 ~~~gi~~~~v~~ev~~~N 83 (83)
T PF01503_consen 66 ASMGIDLDEVFDEVHRRN 83 (83)
T ss_dssp HHTT--HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcC
Confidence 358999999999987753
No 335
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=20.42 E-value=3.2e+02 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCC
Q 029149 111 EETIREALKVVLDERNHPLLIHCKR 135 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~pVLVHC~a 135 (198)
.+++.++++..++ .++|++|++.-
T Consensus 160 ~~el~~al~~a~~-~~gp~lIeV~v 183 (205)
T cd02003 160 IEELKAALAKAKA-SDRTTVIVIKT 183 (205)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 5778888888775 48899998864
No 336
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=20.39 E-value=2.6e+02 Score=28.49 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=32.9
Q ss_pred chHHHhHhCCceEEEe-----------------------ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 82 SNLEFLKANGIQLFQF-----------------------GIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~l-----------------------pi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
.+.+.|.++||.++.- |+-....+ ..+.+.++.++. +..++||++--..|-+
T Consensus 96 efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~----~~~~~ee~~~fa-~~~gyPvmiKA~~GGG 170 (1149)
T COG1038 96 EFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDG----PIETIEEALEFA-EEYGYPVMIKAAAGGG 170 (1149)
T ss_pred HHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCC----CcccHHHHHHHH-HhcCCcEEEEEccCCC
Confidence 4566788899998862 22222222 235566566655 4459999999887765
No 337
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.30 E-value=4.7e+02 Score=24.69 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=41.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHh-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKA-NGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGKH 138 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~-~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~~ 138 (198)
+..|+++||++|.-+-..... ++.+.+.+ .+|+++...=+.. .....+.. ....++|-.+-|+.|-+
T Consensus 28 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~rhE~~--------A~~~AdgY---ar~tg~~gv~~~t~GpG 95 (587)
T PRK06965 28 MKALAAEGVEFIWGYPGGAVL-YIYDELYKQDKIQHVLVRHEQA--------AVHAADGY---ARATGKVGVALVTSGPG 95 (587)
T ss_pred HHHHHHcCCCEEEecCCcchH-HHHHHHhhcCCCeEEEeCCHHH--------HHHHHHHH---HHHhCCCeEEEECCCcc
Confidence 468899999999998776532 23344433 5788865422110 11111111 11234565555666666
Q ss_pred hHHHHHHHHH
Q 029149 139 RTGCLVGCLR 148 (198)
Q Consensus 139 RTG~v~a~yL 148 (198)
=+-++.+++-
T Consensus 96 ~~N~l~gl~~ 105 (587)
T PRK06965 96 VTNAVTGIAT 105 (587)
T ss_pred HHHHHHHHHH
Confidence 5655555444
No 338
>PRK12827 short chain dehydrogenase; Provisional
Probab=20.30 E-value=4e+02 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCC-cEEEEcCCCC
Q 029149 111 EETIREALKVVLDERNH-PLLIHCKRGK 137 (198)
Q Consensus 111 ~~~v~~~l~~i~~~~~~-pVLVHC~aG~ 137 (198)
.+.+.+.++.+.+..++ -++|||.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 98 (249)
T PRK12827 71 FAATRAALDAGVEEFGRLDILVNNAGIA 98 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 46677777777654333 4999998654
No 339
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=20.23 E-value=3.6e+02 Score=21.81 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=44.3
Q ss_pred cHHHHHhcCCcEEEEcCC-CCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 029149 59 NFSFLKSLGLRSVIYLCP-EPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIHCKRGK 137 (198)
Q Consensus 59 ~~~~L~~~GIktVInLr~-e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVHC~aG~ 137 (198)
....|.++|++=-+-+-. +...+...+++++.+++.+..|-+-+. .+...+++.+.+.....|+|....|.
T Consensus 27 Ga~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~--------TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 27 GANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDT--------TDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred HHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCC--------CHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 456677777653222222 123345677788889888777655331 23556777777654557888877777
Q ss_pred ChH
Q 029149 138 HRT 140 (198)
Q Consensus 138 ~RT 140 (198)
|-
T Consensus 99 -R~ 100 (203)
T TIGR01378 99 -RL 100 (203)
T ss_pred -cH
Confidence 64
No 340
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=20.09 E-value=3.8e+02 Score=25.77 Aligned_cols=65 Identities=22% Similarity=0.415 Sum_probs=36.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhC-CceEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCcEEEEcCCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKAN-GIQLFQFGIDGCKEPFVNIPEETIREALKV-VLDERNHPLLIHCKRGK 137 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~-gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~-i~~~~~~pVLVHC~aG~ 137 (198)
++.|.++|++.|+ +++..-+-++.=.+..+ +|+. |+-++... .. ||.+ +....+.||.|=|++|.
T Consensus 15 ~eeL~r~GV~~vv-icPGSRSTPLala~~~~~~i~~-hv~~DERs-------ag----FfALGlAKas~rPVavi~TSGT 81 (566)
T COG1165 15 LEELARLGVRDVV-ICPGSRSTPLALAAAAHDAITV-HVHIDERS-------AG----FFALGLAKASKRPVAVICTSGT 81 (566)
T ss_pred HHHHHHcCCcEEE-ECCCCCCcHHHHHHHhcCCeEE-EEecccch-------HH----HHHHhhhhhcCCCEEEEEcCcc
Confidence 5788999999865 34432222343344444 4443 34444332 11 2222 22346889999998876
No 341
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=20.09 E-value=1.6e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 029149 127 HPLLIHCKRGKHRTGCLVGCLRKL 150 (198)
Q Consensus 127 ~pVLVHC~aG~~RTG~v~a~yL~~ 150 (198)
+=|.|+|..|++.|.++++..++.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999998888777753
No 342
>PRK06500 short chain dehydrogenase; Provisional
Probab=20.02 E-value=4.5e+02 Score=20.80 Aligned_cols=67 Identities=9% Similarity=-0.097 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 029149 60 FSFLKSLGLRSVIYLCPEPYPDSNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERN-HPLLIHCKRG 136 (198)
Q Consensus 60 ~~~L~~~GIktVInLr~e~~~~~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~-~pVLVHC~aG 136 (198)
...|.+.|.+.|+--|.++ ...+..+..+-+...+..+-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 23 a~~l~~~g~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 23 ARQFLAEGARVAITGRDPA---SLEAARAELGESALVIRADAG-------DVAAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHHHCCCEEEEecCCHH---HHHHHHHHhCCceEEEEecCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4567788987555433321 122233333434333333321 24556666666655323 2489999764
No 343
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.01 E-value=3.1e+02 Score=23.67 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=31.3
Q ss_pred chHHHhHhCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE----cCCCC
Q 029149 82 SNLEFLKANGIQLFQFGIDGCKEPFVNIPEETIREALKVVLDERNHPLLIH----CKRGK 137 (198)
Q Consensus 82 ~~~~~~~~~gI~~~~lpi~~~~~p~~~~~~~~v~~~l~~i~~~~~~pVLVH----C~aG~ 137 (198)
+....++..|+.|+...... ..+++.++++..++. ++|.+|+ |..+.
T Consensus 147 d~~~iA~a~G~~~Va~~~~~--------~~~~l~~~l~~Al~~-~Gps~I~v~~pC~~~n 197 (279)
T PRK11866 147 NPIALALAAGATFVARGFSG--------DVKHLKEIIKEAIKH-KGFSFIDVLSPCVTFN 197 (279)
T ss_pred CHHHHHHHCCCCEEEEEcCC--------CHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCC
Confidence 34466777888887654442 256788888887764 7786666 66663
Done!