BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029152
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 219 bits (558), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/155 (72%), Positives = 123/155 (79%), Gaps = 8/155 (5%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GGY +GA +SEGD+ NTTIFVGGLD +VTDEDL+QPFS++GEI SVKIPVGKGCG
Sbjct: 288 GGYMPSGA---FTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG 344
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDG 163
FVQF NR NAEEAL KLNGTVIGKQ+VRLSWGRNPANKQ R YGNQW YYGGQ Y+G
Sbjct: 345 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNG 404
Query: 164 YGYAIPPPNDPSMYAAAAAAYGAYPVYGSHQQQVS 198
YGY +P P DP MY AA YP+YG HQQQVS
Sbjct: 405 YGYMVPQP-DPRMYPAAP----YYPMYGGHQQQVS 434
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 111
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 112 NAEEALHKLNGTVIGKQSVRL 132
+A+ ++NG +++R+
Sbjct: 253 ERTKAMTEMNGVKCSSRAMRI 273
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIPVGK------GCGF 104
G Q+ + N TI+VG L + + L F+ + EI S+K+ K G GF
Sbjct: 91 GNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGF 150
Query: 105 VQFANRENAEEALHKLNGTVI--GKQSVRLSWG 135
V+F + + A++ L + NG + Q RL+W
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNWA 183
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 216 bits (549), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 110/155 (70%), Positives = 120/155 (77%), Gaps = 8/155 (5%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GGY NG + EGD NTTIFVGGLD +VTDEDL+QPF+++GEI SVKIPVGKGCG
Sbjct: 286 GGYMPNGTLTR---PEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG 342
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDG 163
FVQF NR NAEEAL KLNGTVIGKQ+VRLSWGRNPANKQ R YGNQW YYGGQ Y+G
Sbjct: 343 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNG 402
Query: 164 YGYAIPPPNDPSMYAAAAAAYGAYPVYGSHQQQVS 198
YGY +P P DP MY AA YP+YG HQQQVS
Sbjct: 403 YGYMVPQP-DPRMYPAAP----YYPMYGGHQQQVS 432
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 111
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 112 NAEEALHKLNGTVIGKQSVRL 132
+A+ ++NG +++R+
Sbjct: 251 ERTKAMTEMNGVKCSSRAMRI 271
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIPVGK------GCGF 104
G Q+ + N TI+VG L + + L F+ EI SVK+ K G GF
Sbjct: 89 GNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGF 148
Query: 105 VQFANRENAEEALHKLNGTVI--GKQSVRLSWG 135
V+F + + A++ L + NGT + Q RL+W
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWA 181
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 209 bits (533), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/159 (63%), Positives = 121/159 (76%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99
++L GGYASNGA G QS+GDSSNTTIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP G
Sbjct: 270 VILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAG 329
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQ 159
KGCGFVQF++R +A+EA+ KL+G +IGKQ+VRLSWGR+PANKQ R D G+QW+G Y G Q
Sbjct: 330 KGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQ 389
Query: 160 VYDGYGYAIPPPNDPSMYAAAAAAYGAYPVYGSHQQQVS 198
Y GYGY D MYA AA + YG+HQQ VS
Sbjct: 390 NYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQPVS 428
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC------GFVQFANRENAEEAL 117
N TI++G L + + L FSQ GE+ SVKI K GFV+F AE+ L
Sbjct: 83 NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVL 142
Query: 118 HKLNGTVI--GKQSVRLSWGRNPANKQFRADYGNQWS 152
NGT++ +Q RL+W ++ RA+ G+ +S
Sbjct: 143 QSYNGTMMPNTEQPFRLNWAGFSTGEK-RAETGSDFS 178
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENAEE 115
S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F +
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSR 234
Query: 116 ALHKLNGTVIGKQSVRL 132
A+ ++NG +++R+
Sbjct: 235 AMTEMNGVYCSSRAMRI 251
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 100/116 (86%), Gaps = 1/116 (0%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99
++L GG+ SNG+ G G QS+G+S+N TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVG
Sbjct: 296 VILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG 355
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAY 155
KGCGFVQFA+R++AE+A+ LNGTVIGK +VRLSWGR+P NKQ+R D G QW+G Y
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY 410
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 116
+ ++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 117 LHKLNGTVIGKQSVRL 132
L ++NG + +R+
Sbjct: 261 LTEMNGAYCSNRQMRV 276
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T++VG L + + L FS GE++SVK+ K G GFV+F +R AEE L
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 120 LNGTVI--GKQSVRLSW 134
+G+V+ Q R++W
Sbjct: 169 YSGSVMPNSDQPFRINW 185
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 113/151 (74%), Gaps = 10/151 (6%)
Query: 27 RNSSYCQFNIVFLLVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS 86
R ++Y Q N L L GG+ NG+ S+G+S+N+TIFVGGLD +VT+EDL QPFS
Sbjct: 294 RAAAYGQQNGSQALTLAGGHGGNGS-----MSDGESNNSTIFVGGLDADVTEEDLMQPFS 348
Query: 87 QYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRAD 146
+GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +VRLSWGR+P NKQ+R+D
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSD 407
Query: 147 YGNQWSGAYYGGQVYDGYGYAIPPPNDPSMY 177
GNQW+G Y GQ Y+ GYA D +MY
Sbjct: 408 SGNQWNGGYSRGQGYNN-GYA---NQDSNMY 434
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T++VG L + + L FS E++SVK+ K G GFV+F +R AEEAL
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 120 LNGTVI--GKQSVRLSW 134
+G + +Q RL+W
Sbjct: 180 FSGVTMPNAEQPFRLNW 196
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 116
+ +IFVG L P+V+D L + F+ +Y + K+ + KG GFV+F + A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 117 LHKLNGTVIGKQSVRL 132
+ ++NG + +R+
Sbjct: 272 MTEMNGAFCSSRQMRV 287
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
Q Q E D +NTTIFVGGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +A
Sbjct: 271 QATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASA 330
Query: 114 EEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPND 173
E+AL LNGT +G QS+RLSWGR+P++KQ GAYYG PP D
Sbjct: 331 EQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQD 390
Query: 174 PSMYAAAAAAYGAYPVYGSHQQ 195
P+MY YG YP Y ++QQ
Sbjct: 391 PNMY------YGNYPGYANYQQ 406
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENA 113
DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV+FA+
Sbjct: 172 DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQ 231
Query: 114 EEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGN 149
A+ ++NG + + +R+ + + P +A Y N
Sbjct: 232 LRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQN 269
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
++++G L + + L F GE+ S K+ K G GF++F + AE L
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 120 LNGTVIG--KQSVRLSWG 135
NGT++ +Q+ R++W
Sbjct: 145 YNGTLMPNVEQNFRMNWA 162
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 84/124 (67%), Gaps = 4/124 (3%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
QG E D +NTTIFVG +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR A
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACA 326
Query: 114 EEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYG---NQWSGAYYGGQVYDGYGYAIPP 170
E+AL LNGT +G QS+RLSWGR+P+NKQ + D Y Q Y+ YGYA PP
Sbjct: 327 EQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYA-PP 385
Query: 171 PNDP 174
P DP
Sbjct: 386 PQDP 389
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFV 105
G G + + + T+FVG L P+VTD L + F + Y + K+ KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 106 QFANRENAEEALHKLNGTVIGKQSVR 131
+FA+ A+ ++NG + +R
Sbjct: 221 RFADESEQIRAMTEMNGQYCSSRPMR 246
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
++++G L P + + L F GE + K+ K G GF++F N AE L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 120 LNGTVI--GKQSVRLSWGRNPANKQFRAD 146
NG + +Q+ RL+W + A ++ +A+
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAE 169
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 85/121 (70%), Gaps = 8/121 (6%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 118
+ D +NTTIFVGGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +AE AL
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALS 313
Query: 119 KLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWS-GAYYG--GQVYDGYGYAI-PPPNDP 174
LNGT +G QS+RLSWGR+P + +A QW+ G YYG Q GYGYA PP DP
Sbjct: 314 VLNGTQLGGQSIRLSWGRSPNKQSDQA----QWNGGGYYGYPPQPQGGYGYAAQPPTQDP 369
Query: 175 S 175
+
Sbjct: 370 N 370
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------ 98
+A GA + Q+EG + TIFVG L P VTD L F YG + K+ +
Sbjct: 137 WAQAGAGEKRFQTEG--PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGR 194
Query: 99 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132
KG GFV+FA+ A+ ++NG + +R+
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 53 GQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFV 105
G G Q+ G +S+ ++++G L + + + F+Q GE S K+ K G GF+
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 106 QFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPA-NKQFRAD 146
+F + AE L NG + +Q+ RL+W + A K+F+ +
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTE 150
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 3/115 (2%)
Query: 55 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAE 114
G ++ D +NTT+FVGGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+ + AE
Sbjct: 251 GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAE 310
Query: 115 EALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIP 169
EAL LNG +G +VRLSWGR+P+NKQ D + G Y GQ + YGY +P
Sbjct: 311 EALRMLNGVQLGGTTVRLSWGRSPSNKQ-SGDPSQFYYGGY--GQGQEQYGYTMP 362
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPVG------KGCGFVQFANRENA 113
DS + TIFVG L +VTD L + F + Y + K+ + KG GFV+F++
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 114 EEALHKLNGTVIGKQSVRL 132
A+ ++NG + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T+++G L + + L F+ GE+ S K+ K G GF++FA+ AE L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 120 LNGTVIGK---QSVRLSW 134
N I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNW 140
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 118
E D + TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+
Sbjct: 231 ESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQ 290
Query: 119 KLNGTVIGKQSVRLSWGRNPANKQF--RADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSM 176
++ G VIG+Q+VR+SW +NP + +AD NQW+G Y GQ YD Y Y DPS+
Sbjct: 291 RMQGQVIGQQAVRISWSKNPGQDGWVTQAD-PNQWNGYYGYGQGYDAYAYGA--TQDPSV 347
Query: 177 YAAAAAAYGAYPVYGSHQQQVS 198
YA Y YP G Q +S
Sbjct: 348 YAYGGYGYPQYPQQGEGTQDIS 369
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 23/130 (17%)
Query: 66 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 118
+IFVG L P+VTD L++ F Y + K+ KG GFV+FA A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 119 KLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYA 178
++NG + +R+S N + Y + A+ P PS A
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTK----------------AVYPVTVPSAVA 220
Query: 179 AAAAAYGAYP 188
A AY A P
Sbjct: 221 APVQAYVAPP 230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T+++G L V + L FSQ GE+ SVK+ K G GF++F + AE L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 120 LNGTVI--GKQSVRLSWG 135
NGT + + + RL+W
Sbjct: 85 YNGTQMPGTELTFRLNWA 102
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 59/78 (75%)
Query: 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 119
D++N+T+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF NR++AE A+++
Sbjct: 298 ADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ 357
Query: 120 LNGTVIGKQSVRLSWGRN 137
L G +G +RLSWGRN
Sbjct: 358 LQGYPLGNSRIRLSWGRN 375
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFAN 109
+S +S +IFVG L PNV + D+ F S+Y S KI V +G GFV+F +
Sbjct: 178 KSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Query: 110 RENAEEALHKLNGTVIGKQSVRL 132
+ + AL ++ G + G + +R+
Sbjct: 238 ENDQKSALAEMQGQICGDRPIRV 260
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG------FVQFANRENAEEALH 118
TT+++G L+P VT+ ++Q ++ G+ VK+ + G FV+FA+ A A+
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 119 KLNGTVIGKQSV-RLSWG 135
N + G + +L+W
Sbjct: 153 MNNKPIPGTNHLFKLNWA 170
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 88.2 bits (217), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF 107
SN P Q S D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ+
Sbjct: 281 SNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQY 339
Query: 108 ANRENAEEALHKLNGTVIGKQSVRLSWGRN 137
+ + AE+A++ + G ++G +RL+WG N
Sbjct: 340 SEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 49 NGAPGQGPQSEGDSSNT---TIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------ 98
N A G G Q S +IFVG L P D DL F S Y S KI V
Sbjct: 163 NWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGL 222
Query: 99 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRAD 146
+ GFV+F++ + + AL + G + + +R+S + AD
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAAD 270
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 47 ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG--- 103
+ + P Q G + T+++G L+P + ++Q ++ E +VK+ K
Sbjct: 67 SPSSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSET 126
Query: 104 -----FVQFANRENAEEALHKLNGTVI--GKQSVRLSWG 135
FVQF++ AE AL K N T+I + +L+W
Sbjct: 127 LISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWA 165
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ +R +AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 121 NGTVIGKQSVRLSWGR 136
G I VRLSWGR
Sbjct: 369 QGFPIANSRVRLSWGR 384
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 115
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 116 ALHKLNGTVIGKQSVRL 132
AL ++ G + +++++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 83.6 bits (205), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 121 NGTVIGKQSVRLSWGR 136
G ++G +RLSWGR
Sbjct: 416 QGFIVGGSPIRLSWGR 431
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 49 NGAPGQGPQSEGDSS-NTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---PV---GK 100
N A G QS S+ ++FVG L P T+ DL F +++ + +V++ P+ +
Sbjct: 175 NWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSR 234
Query: 101 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140
GFV+F + + AL +++G +++R+++ P N
Sbjct: 235 CFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYA-TPRN 273
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 117 LHKL-NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGG 158
+L N VI Q ++L+WGR ++ D NQ G + G
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQ----DGANQQGGVAHSG 318
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D S T+++GGLD VT++DLR F +GEI ++++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 121 -NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYG 157
N VI ++L WG+ A K + G Q A+ G
Sbjct: 284 ANKLVIKGVRLKLMWGKPQAPKPEEDEAGRQGHVAHGG 321
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 117 LHKL-NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYG 157
+L N V+ Q ++L+WGR K + Q S A+ G
Sbjct: 280 AEELSNRLVVNGQRLKLTWGRPQVPKPDQDGSNQQGSVAHSG 321
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N +I + + + WGR+ A +
Sbjct: 288 FNKLIINGRRLNVKWGRSQAAR 309
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 123
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 204 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 124 VIGKQSVRLSWGRNPAN--KQF-RADYGN--QWSGAYYGGQVYDGY---GYAIPP 170
I V+ WG+ + K F + DY QWS Y Q Y Y G+ +PP
Sbjct: 264 TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP 318
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 138
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 114
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 115 EALHKLNGTVIGKQSVRLSWGRNPANKQ 142
AL +NG I + V+++W P++++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 123
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 221 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 124 VIGKQSVRLSWGRNPAN--KQF-RADYGN--QWSGAYYGGQVYDGY---GYAIPP 170
I V+ WG+ + K F + DY QWS Y Q Y Y G+ +PP
Sbjct: 281 TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP 335
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 138
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--------PVGKGCG------- 103
E D T++VG L +VT+ + Q FSQ G S K+ V G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 104 ------FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
FV+F +A AL +NG I + V+++W P++++
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 107
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-------- 96
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 97 -PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-------- 96
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 97 -PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 55 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFV 105
G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV
Sbjct: 263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFV 322
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
F NR +AE AL LNG +I ++L WG+
Sbjct: 323 AFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D S T+++GGL+ +T++DLR F +GEI S+++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 121 -NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYG 157
N VI ++L WG+ A K + G Q A+ G
Sbjct: 284 ANKLVIKGIRLKLMWGKPQAPKPEDDEAGRQGHVAHGG 321
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKFIVNGRRLNVKWGRSQAAR 309
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
S+ +N T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+
Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYG---NQWSGAYYG 157
+NGT I V+ WG+ NP +Q + Y QW G +YG
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQW-GQWYG 314
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG--RNPANK 141
G +G + +R +W + PA K
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPK 190
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAEEA 116
D T++VG L +VT+ + Q FSQ G + K+ + FV+F +A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQ 142
L +NG I + V+++W P++++
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYGN---QWSGAYYG 157
+NGT I V+ WG+ NP +Q + Y QW G +YG
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQW-GQWYG 314
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNP 138
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAEEA 116
D T++VG L +VT+ + Q FSQ G + K+ + FV+F +A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQ 142
L +NG I + V+++W P++++
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96
L GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 101 LTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI 160
Query: 97 PV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQ 150
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N
Sbjct: 161 IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANG 220
Query: 151 WS-----GAYYGGQVY 161
W GA YG ++Y
Sbjct: 221 WKLSPVVGAVYGPELY 236
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96
L GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 93 LTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI 152
Query: 97 PV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQ 150
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N
Sbjct: 153 IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANG 212
Query: 151 WS-----GAYYGGQVY 161
W GA YG ++Y
Sbjct: 213 WKLSPVVGAVYGPELY 228
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-- 98
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 139 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 198
Query: 99 --GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-- 152
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W
Sbjct: 199 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLS 258
Query: 153 ---GAYYGGQVY 161
GA YG ++Y
Sbjct: 259 PVVGAVYGPELY 270
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-- 98
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 156 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 215
Query: 99 --GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-- 152
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W
Sbjct: 216 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLS 275
Query: 153 ---GAYYGGQVY 161
GA YG ++Y
Sbjct: 276 PVVGAVYGPELY 287
>sp|A4F5G6|RFOX2_XENLA RNA binding protein fox-1 homolog 2 OS=Xenopus laevis GN=rbfox2
PE=1 SV=1
Length = 411
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENA 113
SE +S + V + D DLRQ F Q+G+I V+I KG GFV F +A
Sbjct: 166 SETKASPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADA 225
Query: 114 EEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIP 169
+ A KL+ TV+ + + + + R NK+ YGN W + G VY YA+P
Sbjct: 226 DRAREKLHSTVVEGRKIEVNNATARVMTNKKSVTPYGNGWKLSPVVGAVYGPELYAVP 283
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALH 118
++ ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 119 KLNGTVIGKQSVRLSWGRNPANKQFR 144
+L+G +I + + ++ + +++ R
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 122 GTVIGKQSV 130
G ++ + V
Sbjct: 186 GMLLNDKQV 194
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEAL 117
NT+++VG LD NVTD L F Q G + +V++ G G+V F N ++A A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 118 HKLNGTVIGKQSVRLSWG-RNPANKQFRADYGN 149
+LN + + +R+ + R+P+ + R+ GN
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVR--RSGAGN 125
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T ++V L + TD+DL+ F +YG+I S + KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 120 LNG 122
LNG
Sbjct: 275 LNG 277
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
Query: 55 GPQSEGDSS---NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CG--FV 105
G Q E D + +TT+++G + T+E L + FS+ GEI + + + K CG FV
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWSGAYYGGQVYDG 163
F +RE+ E+A+ ++GT++ + +R+ WG G QW GGQV D
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQE---------GRQWGRGRSGGQVRDE 131
Query: 164 YGYAIPP 170
Y P
Sbjct: 132 YRTDYDP 138
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKL 120
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 121 NGTVIGKQSVRLSWGRNPAN 140
NG + + +R+ +N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSN 87
>sp|A6NFN3|RFOX3_HUMAN RNA binding protein fox-1 homolog 3 OS=Homo sapiens GN=RBFOX3 PE=2
SV=4
Length = 312
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 78 DEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL- 132
D DLRQ F Q+G+I V+I KG GFV F +A+ A KLNGT++ + + +
Sbjct: 112 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVN 171
Query: 133 -SWGRNPANKQFRADYGNQWS-----GAYYGGQVYDGYGYAIP 169
+ R NK+ Y N W GA YG + Y G+ P
Sbjct: 172 NATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYP 214
>sp|O95104|SFR15_HUMAN Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4
PE=1 SV=3
Length = 1147
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-- 121
+TT++VG LD T +D+ ++G I S+ + +GC ++ +R++A AL KL+
Sbjct: 507 STTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG 566
Query: 122 GTVIGKQSVRLSWGRNPANKQFRADYGNQW 151
+ ++S++++W NK +ADY W
Sbjct: 567 NYKVNQKSIKIAWA---LNKGIKADYKQYW 593
>sp|Q9NWB1|RFOX1_HUMAN RNA binding protein fox-1 homolog 1 OS=Homo sapiens GN=RBFOX1 PE=1
SV=2
Length = 397
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GA 154
GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W GA
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA 217
Query: 155 YYGGQVYDG 163
Y + Y G
Sbjct: 218 VYSPEFYAG 226
>sp|Q95KI0|RFOX1_MACFA RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis
GN=RBFOX1 PE=2 SV=1
Length = 376
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 100 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 159
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GA 154
GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W GA
Sbjct: 160 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA 219
Query: 155 YYGGQVYDG 163
Y + Y G
Sbjct: 220 VYSPEFYAG 228
>sp|Q5NVN8|RFOX1_PONAB RNA binding protein fox-1 homolog 1 OS=Pongo abelii GN=RBFOX1 PE=2
SV=1
Length = 382
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GA 154
GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W GA
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA 217
Query: 155 YYGGQVYDG 163
Y + Y G
Sbjct: 218 VYSPEFYAG 226
>sp|Q642J5|RFOX1_DANRE RNA binding protein fox-1 homolog 1 OS=Danio rerio GN=rbfox1 PE=2
SV=1
Length = 373
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 78 DEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL- 132
D DLRQ F Q+G+I V+I KG GFV F + +A+ A KL+GTV+ + + +
Sbjct: 132 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESSADADRAREKLHGTVVEGRKIEVN 191
Query: 133 -SWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIP 169
+ R NK+ Y N W G VY YA+P
Sbjct: 192 NATARVMTNKKTVNPYANGWKLNPVVGAVYSPEFYAVP 229
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 119
T+F+G L N + + + F+++GE+ SV+IP KG G+VQF+N E+A++AL
Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 120 LNGTVIGKQSVRLSW 134
L G I + VRL +
Sbjct: 328 LQGEYIDNRPVRLDF 342
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHK 119
TIFVG L ++ DE L++ F G + ++ +G G+V F N+ AE+A+ +
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 120 LNGTVI 125
+ G I
Sbjct: 229 MQGKEI 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,347,605
Number of Sequences: 539616
Number of extensions: 3682353
Number of successful extensions: 10544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 522
Number of HSP's that attempted gapping in prelim test: 8652
Number of HSP's gapped (non-prelim): 1798
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)